Conservation of Neuron-Astrocyte Correlated Activity in Developing Sensory Pathways.
The 9 matches
- [1] § Methods › Method Details › Tamoxifen Injections ↔ SCwave_Tracking/tracking_framework.m, lines 214–280 · score 0.81 · mGluR3, GCaMP6s, mGluR5, CreER, Aldh1l1, tamoxifen
- [2] § Methods › Method Details › Image Processing › Two‐Photon Imaging ↔ DualAnalysisSC.m, lines 48–91 · score 0.78 · peak prominence, peak distance, peak width, msbackadj, findpeaks, trace
- [3] § Results › Retinal Waves Induce Coordinated Increases in Calcium Among SC Astrocytes ↔ SCwave_Tracking/tracking_framework.m, lines 214–280 · score 0.63 · GCaMP6s, CreER, Aldh1l1, tamoxifen, Day, brain
- [4] § Methods › Method Details › Image Processing › Two‐Photon Imaging ↔ twoP_SCIC_AnalysisROIs.m, lines 55–77 · score 0.62 · peak prominence, peak width, findpeaks, ROIs, median, threshold
- [5] § Methods › Method Details › Image Processing › Two‐Photon Imaging ↔ SCGrid_Rasterplots.m, lines 151–165 · score 0.60 · peak prominence, peak width, findpeaks, ROIs, threshold, frames
- [6] § Methods › Method Details › Image Processing › Two‐Photon Imaging ↔ twoP_SCIC_AnalysisROIs.m, lines 55–77 · score 0.58 · peak prominence, peak width, findpeaks, median, threshold, IC
- [7] § Methods › Method Details › Tamoxifen Injections ↔ grpSCAnalysis.m, lines 172–203 · score 0.57 · GCAMP6s, CreER, Aldh1l1, tamoxifen
- [8] § Results › Spatial and Temporal Coordination of Astrocyte and Neuronal Activity in the Developing SC ↔ grpSCAnalysis.m, lines 172–203 · score 0.55 · jRGECO1a, GCAMP6s, Aldh1l1, Thy1, neurons, SC
- [9] § Methods › Method Details › Image Processing › Widefield Tracking of Calcium Waves ↔ SCwave_Tracking/CINDA-master/CINDA-master/cs2mex.c, lines 1902–1998 · score 0.54 · cost circulation, formulates, tracking, trajectory, CINDA, edges
Paper
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The authors' code
MATLAB · 280 lines · 11 KB · no license · 2 matches
- %% Tracking of SC waves
- %Code was developed by Xuelong Mi in the lab of Guoqiang Yu and adapted by
- %Vered Kellner
- close all
- clearvars -except dataStruct
- f=1;
- %% setting
- startup; % initialize
- preset = 1; % default
- opts = util.parseParam(preset,1);
- cellAns=questdlg('Cell type?','','Neuron','Astrocyte','Neuron');
- useList={'Left','Right','Both'};
- useAns=listdlg('ListString',useList,'PromptString','Use?');
- %% large-impact paramters
- if strcmp(cellAns,'Astrocyte')
- opts.lenFilter = 20; % the minimum duration of signal wave. Will filter out short signal waves - was 3 for neurons
- opts.maxJump = 20; % allowed max jump (due to merging, some detection will not be found) - was 8 for neurons
- % opts.lenFilter = 10; % the minimum duration of signal wave. Will filter out short signal waves - was 3 for neurons
- % opts.maxJump = 10; % allowed max jump (due to merging, some detection will not be found) - was 8 for neurons
- % % % For example, if one signal wave appear at frame 1 and frame 5, then we at
- % least set this parameter to 4 to link them.
- opts.jumpProb = 0.9; % Set from 0 to 1. It's the false negative probability - was 0.5 for neurons
- % (the probablity I didn't detect the signal in one frame.) But due to the
- % merging, I set it to 0.5. Large this parameter, more easily to link
- % detections for large jump.
- %% other parameters
- opts.thrARScl = 0.2; % bottom-up to check detection, start from (opts.thrARScl x noise) was 3 for neurons, 0.2 for astro
- opts.smoXY = 5; % smooth parameter for select region was 1 for neurons
- opts.minCir = 0.05; % minimum circularity for one detection was 0.05
- opts.stepRatio = 0.1; % the step for bottom-up. Should be small if SNR is low. Now is 0.1 x noise one step
- opts.cut = 30; % parameter for calculating dF. If the F0 change strongly, should be small.
- opts.movAvgWin = 10; % parameter for calculating dF. If the F0 change strongly, should be small.
- opts.growIoU = 2; % parameter for calculating IoU. grow the region then judge IoU.
- else
- opts.lenFilter = 20; %was 20 for neurons
- opts.maxJump = 20;
- opts.jumpProb = 0.9;
- %% other parameters
- opts.thrARScl = 0.1; % bottom-up to check detection, start from (opts.thrARScl x noise) was 1 for neurons then 2 then 0.5
- opts.smoXY = 3; % smooth parameter for select region was 2 for neurons
- opts.minCir = 0.05; % minimum circularity for one detection - was 0.05
- opts.stepRatio = 0.1; % the step for bottom-up. Should be small if SNR is low. Now is 0.1 x noise one step
- opts.cut = 30; % parameter for calculating dF. If the F0 change strongly, should be small.
- opts.movAvgWin = 10; % parameter for calculating dF. If the F0 change strongly, should be small.
- opts.growIoU = 2; % parameter for calculating IoU. grow the region then judge IoU.
- end
- opts.minSize = 100; % minimum number of pixels for one detection in each frame
- opts.maxSize = 5000; % maximize number of pixels for one detection in each frame
- % linking parameters
- opts.IoULimit = 0.01; % IoU limitation for linking together
- opts.zThr = 0.2; % filter small-score - was 3 for neurons was 0.2 for dim was 0.5
- %% file path
- p0 = 'D:\Data\RAW WF data\'; % folder name
- f0 = uigetfile([p0,'*.czi']); % file name
- %% load data
- load('random_Seed');
- rng(s);
- [folder, name, ext] = fileparts(strcat(p0,'\',f0));
- path0 = [p0,name,'\'];
- % if ~exist(path0,'dir') && ~isempty(path0)
- % mkdir(path0);
- % end
- [datOrg,opts] = burst.prep1(p0,f0,[],opts); % read data
- %% 1. registration
- % datReg = ui.algo.registrate_CC(datOrg);
- %% 2. background
- [dFOrg] = burst.actTopTracking(datOrg,opts); % read data
- %% find movement times (from Travis / Vered)
- Y=datOrg;
- norms = [];
- regto = fft2(mean((Y),3));
- t = size(Y,3);
- parfor j = 1:t
- [output, Greg] = dftregistration(regto,fft2(Y(:,:,j)),1) %the last number will determine how sensitive this is
- norms(j) = norm([1 0 output(3); 0 1 output(4); 0 0 1],2);
- end
- hit = zeros(size(norms));
- for j = 1:t
- if norms(j) > 1
- %look 50 ahead
- if j>5 && j < t-30
- if sum(norms(j+1:j+30)-1) > 0
- hit(j-5:j+30) = 1;
- elseif hit(j-5) == 1
- % hit(i:i+5) = 1;
- % hit(i+6:i+56)=0;
- hit(j:j+1) = 1;
- hit(j+2:j+30)=0;
- else
- hit(j) = 0;
- end
- end
- end
- end
- figure; plot(norms-1); hold on; plot(hit)
- mvmInd=find(hit>0);
- %% 3. detection
- tic
- zScoreMap = burst.detect(dFOrg,opts);
- toc
- %% 4. linking
- tic
- [evtLst,~,evtLen] = burst.linking(zScoreMap,opts);
- toc
- %% 5. filter
- evtLen2=evtLen;
- evtLst2=evtLst;
- evtLst = evtLst(evtLen>opts.lenFilter);
- evtLen = evtLen(evtLen>opts.lenFilter);
- %% feature
- [H,W,T] = size(datOrg);
- movFea = cell(numel(evtLst),1);
- % determine if events are in left or right SC
- figure; imagesc(squeeze(mean(datOrg,3)))
- lh = imline(gca);
- [s] = round(lh.getPosition); x = s(1);
- % % Original scale dF, without stabilization (we use square root to stabilize
- % % data), and smooth filter to denoise.
- dF = imgaussfilt(dFOrg.*(2*datOrg-dFOrg)*opts.maxValueDat,3);
- for i = 1:numel(evtLst)
- vel = nan(1,T);
- % first row of dir: positive - north, negative - south
- % second row of dir: positive - east, negative - west
- dir = nan(2,T);
- [ih,iw,it] = ind2sub([H,W,T],evtLst{i});
- t0 = min(it);
- t1 = max(it);
- ts = unique(it); %active frames for this event
- centroid = nan(2,T);
- for j = 1:numel(ts)
- curIt = ts(j);
- curIh = ih(it==curIt);
- curIw = iw(it==curIt);
- curPix = sub2ind([H,W],curIh,curIw);
- weight = dFOrg(:,:,curIt);
- weight = weight(curPix);
- weight = weight/sum(weight);
- centroidX = weight'*curIh;
- centroidY = weight'*curIw;
- centroid(1,curIt) = H+1-centroidX;
- centroid(2,curIt) = centroidY;
- end
- vel(t0) = 0;
- dir(:,t0) = 0;
- pret = t0;
- t = t0+1;
- while(t<=t1)
- if(~isnan(centroid(1,t)))
- prePos = centroid(:,pret);
- curPos = centroid(:,t);
- move = curPos-prePos;
- dur = t-pret;
- vel(pret+1:t) = sqrt(sum(move.^2))/dur;
- dir(:,pret+1:t) = repmat(move/sqrt(sum(move.^2)),1,dur);
- pret = t;
- end
- t = t+1;
- end
- if useAns==1
- evtLoc='Left';
- elseif useAns==2
- evtLoc='Right';
- elseif useAns==3
- if nanmedian(centroid(2,:))>x
- evtLoc='Right';
- else
- evtLoc='Left';
- end
- end
- movFea{i}.centroid = centroid;
- movFea{i}.vel = vel;
- movFea{i}.dir = dir;
- movFea{i}.frms=ts; %active frames
- movFea{i}.Side=evtLoc; %left or right
- movFea{i}.amplitude = median(dF(evtLst{i}));
- end
- %% show
- tic
- ov = zeros(3*H,W,3,T);
- ov(1:H,:,1,:) = datOrg;
- ov(1:H,:,2,:) = datOrg;
- ov(1:H,:,3,:) = datOrg;
- ov(H+1:2*H,:,:,:) = double(plt.regionMapWithData_label(evtLst,movFea,datOrg*0.5,0.5))/255;
- ov(2*H+1:end,:,1,:) = dFOrg/max(dFOrg(:));
- ov(2*H+1:end,:,2,:) = ov(2*H+1:end,:,1,:);
- ov(2*H+1:end,:,3,:) = ov(2*H+1:end,:,1,:);
- zzshow(ov);
- toc
- %% manually filter out events - VK added Jan 2022
- %need to compare the above video with raw video, write down in notepad
- %which roi numbers to keep and input here
- userAns=inputdlg('Which events to keep?');
- keepInd=str2num(userAns{:});
- keepInd=unique(keepInd);
- %% create structure for each mouse
- dataStruct(f).Cell=cellAns;
- sensorList={'GCaMP3','GCaMP6s','RGECO','GCaMP6short'};
- sensorAns=listdlg('ListString',sensorList,'PromptString','Sensor:');
- dataStruct(f).Sensor=sensorList{sensorAns};
- promoterList={'GLAST-CreER','SNAP25','Aldh1l1-CreER','Thy1'};
- promoterAns=listdlg('ListString',promoterList,'PromptString','Promoter:');
- dataStruct(f).Promoter=promoterList{promoterAns};
- dataStruct(f).Name=name;
- ageList={'5','6','7','8','9','10','11','12','13','14','15'};
- ageAns=listdlg('ListString',ageList,'PromptString','Age (days):');
- dataStruct(f).Age=ageList{ageAns};
- sexList={'Male','Female','?'};
- sexAns=listdlg('ListString',sexList,'PromptString','Sex:');
- dataStruct(f).Sex=sexList{sexAns};
- tmxList={'None','Once','Twice','4HT twice'};
- tmxAns=listdlg('ListString',tmxList,'PromptString','Tamoxifen injection:');
- dataStruct(f).Tamoxifen=tmxList{tmxAns};
- manipList={'None','LY','Vehicle','MPEP','KOfull','KOhet','KOcontrol','Pre','LY+MPEP'};
- manipAns=listdlg('ListString',manipList,'PromptString','Manipulation:');
- dataStruct(f).Manipulation=manipList{manipAns};
- switch manipAns
- case 1
- dataStruct(f).ManipDetails='None';
- case 2
- lyList={'Pre','immediate','10min','30min','1hr','3hr','5.5hr'};
- lyAns=listdlg('ListString',lyList);
- dataStruct(f).ManipDetails=lyList{lyAns};
- case 3
- vehList={'Pre','24hr CTEP','Saline 30min','Saline immediate','Saline 3hr','ddH2O immediate','ddH2O 30min'};
- vehAns=listdlg('ListString',vehList);
- dataStruct(f).ManipDetails=vehList{vehAns};
- case 4
- mpepList={'Pre','immediate','10min','30 min','1-2hr','4-6hr','8-9hr','19-21hr','@5min','@3min','3x & @5min'};
- mpepAns=listdlg('ListString',mpepList);
- dataStruct(f).ManipDetails=mpepList{mpepAns};
- case 5
- KOList={'FMR1','FMR1cKO','IP3R2','mGluR5','Grm3KO','Grm3cKO','mGluR5+MPEP','mGluR5+LY','mGluR5+MPEP+LY','mGluR3+MPEP','mGluR3+LY','mGluR3+LY+MPEP'};
- KOAns=listdlg('ListString',KOList);
- dataStruct(f).ManipDetails=KOList{KOAns};
- case 6
- KOList={'FMR1','FMR1cKO','IP3R2','mGluR5','Grm3KO','Grm3cKO','mGluR5+MPEP','mGluR5+LY','mGluR5+MPEP+LY','mGluR3+MPEP','mGluR3+LY','mGluR3+LY+MPEP'};
- KOAns=listdlg('ListString',KOList);
- dataStruct(f).ManipDetails=KOList{KOAns};
- case 7
- KOList={'FMR1','FMR1cKO','IP3R2','mGluR5','Grm3KO','Grm3cKO','mGluR5+MPEP','mGluR5+LY','mGluR5+MPEP+LY','mGluR3+MPEP','mGluR3+LY','mGluR3+LY+MPEP'};
- KOAns=listdlg('ListString',KOList);
- dataStruct(f).ManipDetails=KOList{KOAns};
- case 8
- dataStruct(f).ManipDetails='None';
- case 9
- lyMPList={'Pre','immediate','10min','30min','1hr','3hr','5.5hr'};
- lyAns=listdlg('ListString',lyMPList);
- dataStruct(f).ManipDetails=lyMPList{lyAns};
- end
- cmntList={'Good','OK','Slightly cloudy','Pretty cloudy','Bad','1024x1024','No/low activity','Animal moving a lot','pinworms'};
- cmntAns=listdlg('ListString',cmntList,'PromptString','Brain state');
- dataStruct(f).comment=cmntList{cmntAns};
- % useList={'Left','Right','Both'};
- % useAns=listdlg('ListString',useList,'PromptString','Use?');
- dataStruct(f).use=useList{useAns};
- dataStruct(f).Events.Duration=evtLen(keepInd); %frames
- dataStruct(f).Events.Area=evtLst(keepInd); %pixels in 3D use [x,y,t]=ind2sub([H,W,T],evtlst{i}) to extract coordinates of pixel
- dataStruct(f).Events.WaveInfo=movFea(keepInd); %centroid, direction, velocity, active frames, side, amp
- dataStruct(f).Events.Frm=T;
- dataStruct(f).Events.MvmInd=mvmInd;
tracking_framework.m at commit cda515b, no license · at the source
Overview
- The Solomon H. Snyder Department of Neuroscience, Johns Hopkins University, Baltimore, Maryland, USA
- Department of Neurophysiology and Neuropharmacology, Center for Physiology and Pharmacology, Medical University of Vienna, Vienna, Austria
- Virginia Tech Research Center, Arlington, Virginia, USA
- Department of Neurogenetics, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany
- Department of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, Maryland, USA
- Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, Maryland, USA
- Department of Otolaryngology Head and Neck Surgery, Johns Hopkins University, Baltimore, Maryland, USA
Abstract
Neurons in developing sensory organs exhibit prolonged burst firing before the onset of sensory experience. This activity promotes neuronal survival and maturation in central sensory pathways. Within the auditory system, periodic bursts of synaptic glutamate release activate metabotropic glutamate receptors (mGluRs) on astrocytes, resulting in spatially and temporally correlated calcium transients; however, whether this phenomenon occurs in other sensory modalities is unknown. Using in vivo calcium imaging in the midbrain of awake mouse pups before eyelid opening, we show that retina wave‐induced burst firing of visual afferents induces correlated waves of astrocyte activity in the superior colliculus (SC), a visual processing region. Glutamate sensor imaging revealed that each neuronal burst resulted in glutamate transients at astrocyte membranes in both developing sensory regions. Calcium transients in SC astrocytes resulted from activation of astrocytic mGluR5 and mGluR3, similar to astrocyte events in the nearby inferior colliculus (IC), which are induced by neuronal burst firing in the cochlea. Astrocyte calcium increased with each neuronal wave in the SC, but only the largest neuronal events triggered astrocyte responses in the IC. Astrocyte transcriptomic analysis suggested differential expression of mGluR3 and mGluR5 between these sensory regions, in accordance with the greater dependence on mGluR5 in IC astrocytes. Despite differences in receptor contribution and temporal features of activity, astrocytes in these different regions exhibited similar overall calcium activity. Thus, neuronal burst firing in developing sensory organs provides a conserved mechanism to synchronize neuronal and astrocyte activity in the brain at a critical stage of development.
Reproduced under the paper's license (CC BY-NC), from the paper cited above.
Repository
Its files are read in the Code ↔ Paper reader above, with 9 matches between paragraphs and lines of code.
Bergles-lab/Kellner-et-al-2024-source-code
cda515bd38ac2c243d4b5b40060e9ed6de280c36, 14 April 2024Availability: 1 check, the latest on 28 September 2026: the link answers
- 28 September 2026: the link answers
338 files
- DualAnalysisSC.m, MATLAB, 226 lines, 1 match
- Helper codes/
bfmatlab/ , MATLAB, 54 linesbfCheckJavaMemory.m - Helper codes/
bfmatlab/ , MATLAB, 83 linesbfCheckJavaPath.m - Helper codes/
bfmatlab/ , MATLAB, 63 linesbfGetFileExtensions.m - Helper codes/
bfmatlab/ , MATLAB, 114 linesbfGetPlane.m - Helper codes/
bfmatlab/ , MATLAB, 85 linesbfGetReader.m - Helper codes/
bfmatlab/ , MATLAB, 45 linesbfInitLogging.m - Helper codes/
bfmatlab/ , MATLAB, 54 linesbfOpen3DVolume.m - Helper codes/
bfmatlab/ , MATLAB, 66 linesbfUpgradeCheck.m - Helper codes/
bfmatlab/ , MATLAB, 226 linesbfopen.m - Helper codes/
bfmatlab/ , MATLAB, 143 linesbfsave.m - Helper codes/
bfmatlab/ , MATLAB, 104 linescreateMinimalOMEXMLMetad ata.m - Helper codes/
bfmatlab/ , MATLAB, 3 linesprivate/ is_octave.m - Helper codes/
bleachCorrect.m , MATLAB, 29 lines - Helper codes/
efficient_subpixel_regis , MATLAB, 226 linestration/ dftregistration.m - Helper codes/
efficient_subpixel_regis , MATLAB, 143 linestration/ efficient_subpixel_regis tration.m - Helper codes/
getGrid.m , MATLAB, 20 lines - Helper codes/
loadTif.m , MATLAB, 30 lines - Helper codes/
normalizeImg.m , MATLAB, 22 lines - Helper codes/
plotSpikeRaster.m , MATLAB, 515 lines - SCGrid_Rasterplots.m, MATLAB, 196 lines, 1 match
- SCwave_Tracking/
CINDA-master/ , Python, 93 linesCINDA-master/ algo.py - SCwave_Tracking/
CINDA-master/ , C, 2,381 linesCINDA-master/ cs2funcs.c - SCwave_Tracking/
CINDA-master/ , C, 2,424 lines, 1 matchCINDA-master/ cs2mex.c - SCwave_Tracking/
CINDA-master/ , MATLAB, 92 linesCINDA-master/ mcc4mot.m - SCwave_Tracking/
CINDA-master/ , MATLAB, 16 linesCINDA-master/ sanity_check.m - SCwave_Tracking/
CINDA-master/ , Jupyter, 11 linesCINDA-master/ test.ipynb - SCwave_Tracking/
CINDA-master/ , MATLAB, 7 linesCINDA-master/ test.m - SCwave_Tracking/
src/ , MATLAB, 86 lines+burst/ actTop.m - SCwave_Tracking/
src/ , MATLAB, 75 lines+burst/ actTopTracking.m - SCwave_Tracking/
src/ , MATLAB, 18 lines+burst/ addToRisingMap.m - SCwave_Tracking/
src/ , MATLAB, 24 lines+burst/ arSimPrep.m - SCwave_Tracking/
src/ , MATLAB, 55 lines+burst/ detect.m - SCwave_Tracking/
src/ , MATLAB, 151 lines+burst/ detectGrowSp.m - SCwave_Tracking/
src/ , MATLAB, 106 lines+burst/ evtGrowLm.m - SCwave_Tracking/
src/ , MATLAB, 93 lines+burst/ evtGrowLm1.m - SCwave_Tracking/
src/ , MATLAB, 121 lines+burst/ evtNeibCorr.m - SCwave_Tracking/
src/ , MATLAB, 150 lines+burst/ evtTop.m - SCwave_Tracking/
src/ , MATLAB, 89 lines+burst/ evtTopEx.m - SCwave_Tracking/
src/ , MATLAB, 120 lines+burst/ extendVoxGrp.m - SCwave_Tracking/
src/ , MATLAB, 70 lines+burst/ filterAndFillSp.m - SCwave_Tracking/
src/ , MATLAB, 101 lines+burst/ getARSim.m - SCwave_Tracking/
src/ , MATLAB, 118 lines+burst/ getARSimZ.m - SCwave_Tracking/
src/ , MATLAB, 15 lines+burst/ getAr.m - SCwave_Tracking/
src/ , MATLAB, 34 lines+burst/ getDfBlk.m - SCwave_Tracking/
src/ , MATLAB, 64 lines+burst/ getDfBlk_linear_removeNa N2.m - SCwave_Tracking/
src/ , MATLAB, 48 lines+burst/ getLmAll.m - SCwave_Tracking/
src/ , MATLAB, 30 lines+burst/ getLocalMax3D.m - SCwave_Tracking/
src/ , MATLAB, 91 lines+burst/ getSpDelay.m - SCwave_Tracking/
src/ , MATLAB, 67 lines+burst/ getSuperEventRisingMapMu ltiThr.m - SCwave_Tracking/
src/ , MATLAB, 151 lines+burst/ getTimeWindow2a.m - SCwave_Tracking/
src/ , MATLAB, 99 lines+burst/ getTimeWindow2b.m - SCwave_Tracking/
src/ , MATLAB, 57 lines+burst/ getValidMap.m - SCwave_Tracking/
src/ , MATLAB, 183 lines+burst/ growSeed.m - SCwave_Tracking/
src/ , MATLAB, 52 lines+burst/ ksegments_orderstatistic s_fin.m - SCwave_Tracking/
src/ , MATLAB, 143 lines+burst/ linking.m - SCwave_Tracking/
src/ , MATLAB, 90 lines+burst/ mergeEvt.m - SCwave_Tracking/
src/ , MATLAB, 53 lines+burst/ mergeEvt_SkipSteps.m - SCwave_Tracking/
src/ , MATLAB, 34 lines+burst/ noiseEstimate.m - SCwave_Tracking/
src/ , MATLAB, 48 lines+burst/ prep1.m - SCwave_Tracking/
src/ , MATLAB, 171 lines+burst/ riseMap2evt.m - SCwave_Tracking/
src/ , MATLAB, 80 lines+burst/ se2evt.m - SCwave_Tracking/
src/ , MATLAB, 50 lines+burst/ seperateEvents.m - SCwave_Tracking/
src/ , MATLAB, 168 lines+burst/ sp2evtStp1.m - SCwave_Tracking/
src/ , MATLAB, 86 lines+burst/ spTop.m - SCwave_Tracking/
src/ , MATLAB, 165 lines+burst/ sv2se.m - SCwave_Tracking/
src/ , MATLAB, 74 lines+burst/ svNeib.m - SCwave_Tracking/
src/ , MATLAB, 47 lines+fea/ curvePolyDeTrend.m - SCwave_Tracking/
src/ , MATLAB, 131 lines+fea/ evt2lmkProp.m - SCwave_Tracking/
src/ , MATLAB, 268 lines+fea/ evt2lmkProp1.m - SCwave_Tracking/
src/ , MATLAB, 108 lines+fea/ evt2lmkProp1Wrap.m - SCwave_Tracking/
src/ , MATLAB, 43 lines+fea/ extendEventTimeRangeByCu rve.m - SCwave_Tracking/
src/ , MATLAB, 21 lines+fea/ filterEvt.m - SCwave_Tracking/
src/ , MATLAB, 41 lines+fea/ gatherRes.m - SCwave_Tracking/
src/ , MATLAB, 21 lines+fea/ getBasicFeatures.m - SCwave_Tracking/
src/ , MATLAB, 70 lines+fea/ getCurveStat.m - SCwave_Tracking/
src/ , MATLAB, 107 lines+fea/ getDistRegionBorderMIMO. m - SCwave_Tracking/
src/ , MATLAB, 115 lines+fea/ getEvtNetworkFeatures.m - SCwave_Tracking/
src/ , MATLAB, 131 lines+fea/ getFeatureQuick.m - SCwave_Tracking/
src/ , MATLAB, 58 lines+fea/ getFeaturesPropTop.m - SCwave_Tracking/
src/ , MATLAB, 197 lines+fea/ getFeaturesTop.m - SCwave_Tracking/
src/ , MATLAB, 20 lines+fea/ getLmk4Sides.m - SCwave_Tracking/
src/ , MATLAB, 198 lines+fea/ getPropagationCentroidQu ad.m - SCwave_Tracking/
src/ , MATLAB, 173 lines+fea/ getPropagationPixTracing .m - SCwave_Tracking/
src/ , MATLAB, 92 lines+fea/ getPvalCorr.m - SCwave_Tracking/
src/ , MATLAB, 131 lines+gtw/ anaGridPath.m - SCwave_Tracking/
src/ , MATLAB, 173 lines+gtw/ buildGTWGraph.m - SCwave_Tracking/
src/ , MATLAB, 268 lines+gtw/ buildGraph4Aosokin.m - SCwave_Tracking/
src/ , MATLAB, 179 lines+gtw/ buildPairTemplate.m - SCwave_Tracking/
src/ , MATLAB, 195 lines+gtw/ dfMov2sp.m - SCwave_Tracking/
src/ , MATLAB, 55 lines+gtw/ dfMov2spSingleThr.m - SCwave_Tracking/
src/ , MATLAB, 36 lines+gtw/ evtRecon.m - SCwave_Tracking/
src/ , MATLAB, 11 lines+gtw/ getDistMat.m - SCwave_Tracking/
src/ , MATLAB, 42 lines+gtw/ getGtwPath.m - SCwave_Tracking/
src/ , MATLAB, 23 lines+gtw/ getMovPixelMapMultiThr.m - SCwave_Tracking/
src/ , MATLAB, 22 lines+gtw/ gtw.m - SCwave_Tracking/
src/ , MATLAB, 28 lines+gtw/ imputeMov.m - SCwave_Tracking/
src/ , MATLAB, 26 lines+gtw/ initGtwParam.m - SCwave_Tracking/
src/ , MATLAB, 56 lines+gtw/ label2path4Aosokin.m - SCwave_Tracking/
src/ , MATLAB, 161 lines+gtw/ mov2spSNR.m - SCwave_Tracking/
src/ , MATLAB, 170 lines+gtw/ procMovie.m - SCwave_Tracking/
src/ , MATLAB, 103 lines+gtw/ sp2graph.m - SCwave_Tracking/
src/ , MATLAB, 227 lines+gtw/ spgtw.m - SCwave_Tracking/
src/ , MATLAB, 106 lines+gtw/ warpRef2Tst.m - SCwave_Tracking/
src/ , MATLAB, 59 lines+gtw/ warpTst2Ref.m - SCwave_Tracking/
src/ , MATLAB, 31 lines+img/ adjustBrightness.m - SCwave_Tracking/
src/ , MATLAB, 33 lines+img/ denoiseMovie.m - SCwave_Tracking/
src/ , MATLAB, 31 lines+img/ eventIndexMap2Loc.m - SCwave_Tracking/
src/ , MATLAB, 53 lines+img/ getEventBorder.m - SCwave_Tracking/
src/ , MATLAB, 43 lines+img/ getLocInfo.m - SCwave_Tracking/
src/ , MATLAB, 61 lines+img/ getRegBorder.m - SCwave_Tracking/
src/ , MATLAB, 23 lines+img/ imputeMov.m - SCwave_Tracking/
src/ , MATLAB, 23 lines+img/ imputeMovVec.m - SCwave_Tracking/
src/ , MATLAB, 11 lines+img/ indexGlobal2Local.m - SCwave_Tracking/
src/ , MATLAB, 41 lines+img/ label2rgb3d_new.m - SCwave_Tracking/
src/ , MATLAB, 15 lines+img/ locCell2Map.m - SCwave_Tracking/
src/ , MATLAB, 17 lines+img/ map2idx.m - SCwave_Tracking/
src/ , MATLAB, 8 lines+img/ pIdx2Rg.m - SCwave_Tracking/
src/ , MATLAB, 114 lines+img/ smoothMovie.m - SCwave_Tracking/
src/ , MATLAB, 49 lines+io/ loadVideo.m - SCwave_Tracking/
src/ , MATLAB, 50 lines+io/ readTiffSeq.m - SCwave_Tracking/
src/ , MATLAB, 11 lines+io/ saveRes.m - SCwave_Tracking/
src/ , MATLAB, 17 lines+io/ video2mat.m - SCwave_Tracking/
src/ , MATLAB, 50 lines+io/ writeTiffSeq.m - SCwave_Tracking/
src/ , MATLAB, 11 lines+plt/ drawArrow.m - SCwave_Tracking/
src/ , MATLAB, 64 lines+plt/ dtwPath.m - SCwave_Tracking/
src/ , MATLAB, 63 lines+plt/ dtwPathMulti.m - SCwave_Tracking/
src/ , MATLAB, 52 lines+plt/ graph.m - SCwave_Tracking/
src/ , MATLAB, 23 lines+plt/ growTrack.m - SCwave_Tracking/
src/ , MATLAB, 78 lines+plt/ regionMapWithData.m - SCwave_Tracking/
src/ , MATLAB, 94 lines+plt/ regionMapWithData_label. m - SCwave_Tracking/
src/ , MATLAB, 15 lines+plt/ superPixelsSelected.m - SCwave_Tracking/
src/ , MATLAB, 14 lines+stat/ genGaussianOrderTable.m - SCwave_Tracking/
src/ , MATLAB, 26 lines+stat/ get2DCorrTable.m - SCwave_Tracking/
src/ , MATLAB, 20 lines+stat/ getBiasMovAvgMin.m - SCwave_Tracking/
src/ , MATLAB, 51 lines+stat/ getCorrMap.m - SCwave_Tracking/
src/ , MATLAB, 111 lines+stat/ getCorrMapAvg16.m - SCwave_Tracking/
src/ , MATLAB, 66 lines+stat/ getCorrMapAvg8.m - SCwave_Tracking/
src/ , MATLAB, 65 lines+stat/ getCorrMapAvg8LowMem.m - SCwave_Tracking/
src/ , MATLAB, 58 lines+stat/ getCorrMapMax8.m - SCwave_Tracking/
src/ , MATLAB, 12 lines+stat/ getFisherTrans.m - SCwave_Tracking/
src/ , MATLAB, 246 lines+stat/ getRegionScore.m - SCwave_Tracking/
src/ , MATLAB, 87 lines+stat/ getRegionScoreHTRG.m - SCwave_Tracking/
src/ , MATLAB, 38 lines+stat/ getSpZ.m - SCwave_Tracking/
src/ , MATLAB, 85 lines+stat/ growRegionNHST.m - SCwave_Tracking/
src/ , MATLAB, 8 lines+ui/ +algo/ calCC.m - SCwave_Tracking/
src/ , MATLAB, 30 lines+ui/ +algo/ calRegionScore.m - SCwave_Tracking/
src/ , MATLAB, 47 lines+ui/ +algo/ costUpdate.m - SCwave_Tracking/
src/ , MATLAB, 34 lines+ui/ +algo/ covCalculate.m - SCwave_Tracking/
src/ , MATLAB, 40 lines+ui/ +algo/ estTraVar.m - SCwave_Tracking/
src/ , MATLAB, 8 lines+ui/ +algo/ fitModel.m - SCwave_Tracking/
src/ , MATLAB, 75 lines+ui/ +algo/ registrate_CC.m - SCwave_Tracking/
src/ , MATLAB, 42 lines+ui/ +algo/ searchBestShift.m - SCwave_Tracking/
src/ , MATLAB, 86 lines+ui/ +com/ addCon.m - SCwave_Tracking/
src/ , MATLAB, 85 lines+ui/ +com/ addConLayer.m - SCwave_Tracking/
src/ , MATLAB, 162 lines+ui/ +com/ addCon_dat.m - SCwave_Tracking/
src/ , MATLAB, 48 lines+ui/ +com/ addCon_proj.m - SCwave_Tracking/
src/ , MATLAB, 51 lines+ui/ +com/ addCon_tools.m - SCwave_Tracking/
src/ , MATLAB, 97 lines+ui/ +com/ addCon_wkfl.m - SCwave_Tracking/
src/ , MATLAB, 67 lines+ui/ +com/ addDetect.m - SCwave_Tracking/
src/ , MATLAB, 123 lines+ui/ +com/ addDetectTab.m - SCwave_Tracking/
src/ , MATLAB, 66 lines+ui/ +detect/ actRun.m - SCwave_Tracking/
src/ , MATLAB, 50 lines+ui/ +detect/ evtReRun.m - SCwave_Tracking/
src/ , MATLAB, 65 lines+ui/ +detect/ evtRun.m - SCwave_Tracking/
src/ , MATLAB, 22 lines+ui/ +detect/ feaRun.m - SCwave_Tracking/
src/ , MATLAB, 46 lines+ui/ +detect/ filterInit.m - SCwave_Tracking/
src/ , MATLAB, 41 lines+ui/ +detect/ filterUpdt.m - SCwave_Tracking/
src/ , MATLAB, 95 lines+ui/ +detect/ flow.m - SCwave_Tracking/
src/ , MATLAB, 37 lines+ui/ +detect/ flow2.m - SCwave_Tracking/
src/ , MATLAB, 78 lines+ui/ +detect/ getFeatureTable.m - SCwave_Tracking/
src/ , MATLAB, 22 lines+ui/ +detect/ getPolyInfo.m - SCwave_Tracking/
src/ , MATLAB, 38 lines+ui/ +detect/ loadOpt.m - SCwave_Tracking/
src/ , MATLAB, 57 lines+ui/ +detect/ mergeRun.m - SCwave_Tracking/
src/ , MATLAB, 60 lines+ui/ +detect/ phaseRun.m - SCwave_Tracking/
src/ , MATLAB, 23 lines+ui/ +detect/ postRun.m - SCwave_Tracking/
src/ , MATLAB, 65 lines+ui/ +detect/ saveExpDbg.m - SCwave_Tracking/
src/ , MATLAB, 41 lines+ui/ +detect/ saveOpt.m - SCwave_Tracking/
src/ , MATLAB, 73 lines+ui/ +detect/ updtFeature.m - SCwave_Tracking/
src/ , MATLAB, 119 lines+ui/ +detect/ updtFeatureRegionLandmar kNetworkShow.m - SCwave_Tracking/
src/ , MATLAB, 50 lines+ui/ +detect/ zsRun.m - SCwave_Tracking/
src/ , MATLAB, 24 lines+ui/ +evt/ addOne.m - SCwave_Tracking/
src/ , MATLAB, 64 lines+ui/ +evt/ curveRefresh.m - SCwave_Tracking/
src/ , MATLAB, 16 lines+ui/ +evt/ evtMngrDeleteSel.m - SCwave_Tracking/
src/ , MATLAB, 37 lines+ui/ +evt/ evtMngrRefresh.m - SCwave_Tracking/
src/ , MATLAB, 9 lines+ui/ +evt/ evtMngrSelAll.m - SCwave_Tracking/
src/ , MATLAB, 39 lines+ui/ +evt/ evtMngrSelectOne.m - SCwave_Tracking/
src/ , MATLAB, 14 lines+ui/ +evt/ evtMngrShowCurve.m - SCwave_Tracking/
src/ , MATLAB, 18 lines+ui/ +evt/ saveCurveFig.m - SCwave_Tracking/
src/ , MATLAB, 49 lines+ui/ +evt/ saveWaves.m - SCwave_Tracking/
src/ , MATLAB, 38 lines+ui/ +evt/ showDetails.m - SCwave_Tracking/
src/ , MATLAB, 106 lines+ui/ +mov/ addPatchLineText.m - SCwave_Tracking/
src/ , MATLAB, 53 lines+ui/ +mov/ clearBuilderMask.m - SCwave_Tracking/
src/ , MATLAB, 64 lines+ui/ +mov/ dragReg.m - SCwave_Tracking/
src/ , MATLAB, 64 lines+ui/ +mov/ drawReg.m - SCwave_Tracking/
src/ , MATLAB, 69 lines+ui/ +mov/ drawReg2.m - SCwave_Tracking/
src/ , MATLAB, 183 lines+ui/ +mov/ featurePlot.m - SCwave_Tracking/
src/ , MATLAB, 10 lines+ui/ +mov/ jumpTo.m - SCwave_Tracking/
src/ , MATLAB, 28 lines+ui/ +mov/ movAddAll.m - SCwave_Tracking/
src/ , MATLAB, 154 lines+ui/ +mov/ movClick.m - SCwave_Tracking/
src/ , MATLAB, 78 lines+ui/ +mov/ movClick2.m - SCwave_Tracking/
src/ , MATLAB, 21 lines+ui/ +mov/ movGauss.m - SCwave_Tracking/
src/ , MATLAB, 23 lines+ui/ +mov/ movPan.m - SCwave_Tracking/
src/ , MATLAB, 25 lines+ui/ +mov/ movSideBySide.m - SCwave_Tracking/
src/ , MATLAB, 21 lines+ui/ +mov/ movViewSel.m - SCwave_Tracking/
src/ , MATLAB, 25 lines+ui/ +mov/ movZoom.m - SCwave_Tracking/
src/ , MATLAB, 31 lines+ui/ +mov/ mypostcallback.m - SCwave_Tracking/
src/ , MATLAB, 5 lines+ui/ +mov/ pauseMov.m - SCwave_Tracking/
src/ , MATLAB, 25 lines+ui/ +mov/ playMov.m - SCwave_Tracking/
src/ , MATLAB, 48 lines+ui/ +mov/ regionSL.m - SCwave_Tracking/
src/ , MATLAB, 96 lines+ui/ +mov/ showRisingMap.m - SCwave_Tracking/
src/ , MATLAB, 11 lines+ui/ +mov/ stepOne.m - SCwave_Tracking/
src/ , MATLAB, 99 lines+ui/ +mov/ updtCursorFunMov.m - SCwave_Tracking/
src/ , MATLAB, 43 lines+ui/ +mov/ updtCursorFunMov2.m - SCwave_Tracking/
src/ , MATLAB, 16 lines+ui/ +mov/ updtMovInfo.m - SCwave_Tracking/
src/ , MATLAB, 34 lines+ui/ +msk/ addCon_datMsk.m - SCwave_Tracking/
src/ , MATLAB, 43 lines+ui/ +msk/ addCon_toolsMsk.m - SCwave_Tracking/
src/ , MATLAB, 73 lines+ui/ +msk/ addCon_wkflMsk.m - SCwave_Tracking/
src/ , MATLAB, 25 lines+ui/ +msk/ adjMov.m - SCwave_Tracking/
src/ , MATLAB, 30 lines+ui/ +msk/ mskBuilderOpen.m - SCwave_Tracking/
src/ , MATLAB, 82 lines+ui/ +msk/ mskLstViewer.m - SCwave_Tracking/
src/ , MATLAB, 115 lines+ui/ +msk/ readMsk.m - SCwave_Tracking/
src/ , MATLAB, 273 lines+ui/ +msk/ saveMsk.m - SCwave_Tracking/
src/ , MATLAB, 24 lines+ui/ +msk/ updtMskSld.m - SCwave_Tracking/
src/ , MATLAB, 69 lines+ui/ +msk/ viewImgMsk.m - SCwave_Tracking/
src/ , MATLAB, 45 lines+ui/ +over/ addBd.m - SCwave_Tracking/
src/ , MATLAB, 48 lines+ui/ +over/ addOv.m - SCwave_Tracking/
src/ , MATLAB, 61 lines+ui/ +over/ adjMov.m - SCwave_Tracking/
src/ , MATLAB, 149 lines+ui/ +over/ chgOv.m - SCwave_Tracking/
src/ , MATLAB, 50 lines+ui/ +over/ getColMap.m - SCwave_Tracking/
src/ , MATLAB, 51 lines+ui/ +over/ getColorCode.m - SCwave_Tracking/
src/ , MATLAB, 74 lines+ui/ +over/ getOv.m - SCwave_Tracking/
src/ , MATLAB, 24 lines+ui/ +over/ getVal.m - SCwave_Tracking/
src/ , MATLAB, 42 lines+ui/ +over/ reMapCol.m - SCwave_Tracking/
src/ , MATLAB, 21 lines+ui/ +over/ updateOvFtMenu.m - SCwave_Tracking/
src/ , MATLAB, 36 lines+ui/ +over/ updtColMap.m - SCwave_Tracking/
src/ , MATLAB, 31 lines+ui/ +over/ updtEvtOvShowLst.m - SCwave_Tracking/
src/ , MATLAB, 5 lines+ui/ +proj/ back2welcome.m - SCwave_Tracking/
src/ , MATLAB, 18 lines+ui/ +proj/ closeMe.m - SCwave_Tracking/
src/ , MATLAB, 79 lines+ui/ +proj/ csv2struct.m - SCwave_Tracking/
src/ , MATLAB, 6 lines+ui/ +proj/ exportVar2Base.m - SCwave_Tracking/
src/ , MATLAB, 27 lines+ui/ +proj/ getInputFile.m - SCwave_Tracking/
src/ , MATLAB, 24 lines+ui/ +proj/ getOutputFolder.m - SCwave_Tracking/
src/ , MATLAB, 35 lines+ui/ +proj/ initStates.m - SCwave_Tracking/
src/ , MATLAB, 15 lines+ui/ +proj/ loadExp.m - SCwave_Tracking/
src/ , MATLAB, 4 lines+ui/ +proj/ newProj.m - SCwave_Tracking/
src/ , MATLAB, 170 lines+ui/ +proj/ prep.m - SCwave_Tracking/
src/ , MATLAB, 132 lines+ui/ +proj/ prepInitUI.m - SCwave_Tracking/
src/ , MATLAB, 50 lines+ui/ +proj/ prepInitUIStruct.m - SCwave_Tracking/
src/ , MATLAB, 226 lines+ui/ +proj/ saveExp.m - SCwave_Tracking/
src/ , MATLAB, 98 lines+ui/ +proj/ struct2csv.m - SCwave_Tracking/
src/ , MATLAB, 31 lines+ui/ +proj/ updtPreset.m - SCwave_Tracking/
src/ , MATLAB, 9 lines+ui/ +proj/ welcome.m - SCwave_Tracking/
src/ , MATLAB, 158 lines+ui/ movStep.m - SCwave_Tracking/
src/ , MATLAB, 31 lines+util/ evalParam.m - SCwave_Tracking/
src/ , MATLAB, 58 lines+util/ filterFields.m - SCwave_Tracking/
src/ , MATLAB, 18 lines+util/ overrideParam.m - SCwave_Tracking/
src/ , MATLAB, 43 lines+util/ parseParam.m - SCwave_Tracking/
src/ , MATLAB, 43 lines+util/ parseParam_for_batch.m - SCwave_Tracking/
src/ , MATLAB, 48 lines+util/ parseProfile.m - SCwave_Tracking/
src/ , MATLAB, 141 linesmisc/ zzshow.m - SCwave_Tracking/
startup.m , MATLAB, 2 lines - SCwave_Tracking/
tools/ , MATLAB, 9 lines+aoBK/ build_graphCutMex.m - SCwave_Tracking/
tools/ , MATLAB, 31 lines+aoBK/ example_graphCutMex.m - SCwave_Tracking/
tools/ , C++, 165 lines+aoBK/ graphCutMex.cpp - SCwave_Tracking/
tools/ , C/C++, 9 lines+aoBK/ graphCutMex.h - SCwave_Tracking/
tools/ , MATLAB, 31 lines+aoBK/ graphCutMex.m - SCwave_Tracking/
tools/ , C/C++, 297 lines+aoBK/ maxflow-v3.03.src/ block.h - SCwave_Tracking/
tools/ , C++, 135 lines+aoBK/ maxflow-v3.03.src/ graph.cpp - SCwave_Tracking/
tools/ , C/C++, 514 lines+aoBK/ maxflow-v3.03.src/ graph.h - SCwave_Tracking/
tools/ , C++, 695 lines+aoBK/ maxflow-v3.03.src/ maxflow.cpp - SCwave_Tracking/
tools/ , MATLAB, 14 lines+aoIBFS/ build_graphCutMex.m - SCwave_Tracking/
tools/ , MATLAB, 35 lines+aoIBFS/ example_graphCutMex.m - SCwave_Tracking/
tools/ , C++, 166 lines+aoIBFS/ graphCutMex.cpp - SCwave_Tracking/
tools/ , MATLAB, 30 lines+aoIBFS/ graphCutMex.m - SCwave_Tracking/
tools/ , C++, 939 lines+aoIBFS/ ibfs/ ibfs.cpp - SCwave_Tracking/
tools/ , C/C++, 202 lines+aoIBFS/ ibfs/ ibfs.h - SCwave_Tracking/
tools/ , MATLAB, 528 linesBrewerMap/ brewermap.m - SCwave_Tracking/
tools/ , MATLAB, 345 linesBrewerMap/ brewermap_view.m - SCwave_Tracking/
tools/ , MATLAB, 139 lineslayout/ +uiextras/ BoxPanel.m - SCwave_Tracking/
tools/ , MATLAB, 93 lineslayout/ +uiextras/ CardPanel.m - SCwave_Tracking/
tools/ , MATLAB, 30 lineslayout/ +uiextras/ Empty.m - SCwave_Tracking/
tools/ , MATLAB, 143 lineslayout/ +uiextras/ Grid.m - SCwave_Tracking/
tools/ , MATLAB, 161 lineslayout/ +uiextras/ GridFlex.m - SCwave_Tracking/
tools/ , MATLAB, 114 lineslayout/ +uiextras/ HBox.m - SCwave_Tracking/
tools/ , MATLAB, 123 lineslayout/ +uiextras/ HBoxFlex.m - SCwave_Tracking/
tools/ , MATLAB, 46 lineslayout/ +uiextras/ HButtonBox.m - SCwave_Tracking/
tools/ , MATLAB, 106 lineslayout/ +uiextras/ Panel.m - SCwave_Tracking/
tools/ , MATLAB, 224 lineslayout/ +uiextras/ TabPanel.m - SCwave_Tracking/
tools/ , MATLAB, 114 lineslayout/ +uiextras/ VBox.m - SCwave_Tracking/
tools/ , MATLAB, 123 lineslayout/ +uiextras/ VBoxFlex.m - SCwave_Tracking/
tools/ , MATLAB, 46 lineslayout/ +uiextras/ VButtonBox.m - SCwave_Tracking/
tools/ , MATLAB, 15 lineslayout/ +uiextras/ get.m - SCwave_Tracking/
tools/ , MATLAB, 15 lineslayout/ +uiextras/ set.m - SCwave_Tracking/
tools/ , MATLAB, 15 lineslayout/ +uiextras/ unset.m - SCwave_Tracking/
tools/ , MATLAB, 297 lineslayout/ +uix/ +mixin/ Container.m - SCwave_Tracking/
tools/ , MATLAB, 71 lineslayout/ +uix/ +mixin/ Flex.m - SCwave_Tracking/
tools/ , MATLAB, 188 lineslayout/ +uix/ +mixin/ Panel.m - SCwave_Tracking/
tools/ , MATLAB, 45 lineslayout/ +uix/ Box.m - SCwave_Tracking/
tools/ , MATLAB, 647 lineslayout/ +uix/ BoxPanel.m - SCwave_Tracking/
tools/ , MATLAB, 96 lineslayout/ +uix/ ButtonBox.m - SCwave_Tracking/
tools/ , MATLAB, 60 lineslayout/ +uix/ CardPanel.m - SCwave_Tracking/
tools/ , MATLAB, 28 lineslayout/ +uix/ ChildEvent.m - SCwave_Tracking/
tools/ , MATLAB, 220 lineslayout/ +uix/ ChildObserver.m - SCwave_Tracking/
tools/ , MATLAB, 9 lineslayout/ +uix/ Container.m - SCwave_Tracking/
tools/ , MATLAB, 346 lineslayout/ +uix/ Divider.m - SCwave_Tracking/
tools/ , MATLAB, 102 lineslayout/ +uix/ Empty.m - SCwave_Tracking/
tools/ , MATLAB, 26 lineslayout/ +uix/ FigureData.m - SCwave_Tracking/
tools/ , MATLAB, 98 lineslayout/ +uix/ FigureObserver.m - SCwave_Tracking/
tools/ , MATLAB, 317 lineslayout/ +uix/ Grid.m - SCwave_Tracking/
tools/ , MATLAB, 466 lineslayout/ +uix/ GridFlex.m - SCwave_Tracking/
tools/ , MATLAB, 190 lineslayout/ +uix/ HBox.m - SCwave_Tracking/
tools/ , MATLAB, 348 lineslayout/ +uix/ HBoxFlex.m - SCwave_Tracking/
tools/ , MATLAB, 96 lineslayout/ +uix/ HButtonBox.m - SCwave_Tracking/
tools/ , MATLAB, 94 lineslayout/ +uix/ Node.m - SCwave_Tracking/
tools/ , MATLAB, 59 lineslayout/ +uix/ Panel.m - SCwave_Tracking/
tools/ , MATLAB, 153 lineslayout/ +uix/ PointerManager.m - SCwave_Tracking/
tools/ , MATLAB, 662 lineslayout/ +uix/ ScrollingPanel.m - SCwave_Tracking/
tools/ , MATLAB, 31 lineslayout/ +uix/ SelectionData.m - SCwave_Tracking/
tools/ , MATLAB, 947 lineslayout/ +uix/ TabPanel.m - SCwave_Tracking/
tools/ , MATLAB, 546 lineslayout/ +uix/ Text.m - SCwave_Tracking/
tools/ , MATLAB, 190 lineslayout/ +uix/ VBox.m - SCwave_Tracking/
tools/ , MATLAB, 348 lineslayout/ +uix/ VBoxFlex.m - SCwave_Tracking/
tools/ , MATLAB, 94 lineslayout/ +uix/ VButtonBox.m - SCwave_Tracking/
tools/ , MATLAB, 47 lineslayout/ +uix/ calcPixelSizes.m - SCwave_Tracking/
tools/ , MATLAB, 102 lineslayout/ +uix/ loadIcon.m - SCwave_Tracking/
tools/ , MATLAB, 17 lineslayout/ +uix/ set.m - SCwave_Tracking/
tools/ , MATLAB, 29 lineslayout/ +uix/ setPosition.m - SCwave_Tracking/
tools/ , MATLAB, 229 lineslayout/ +uix/ tracking.m - SCwave_Tracking/
tools/ , MATLAB, 28 lineslayout/ Contents.m - SCwave_Tracking/
tools/ , MATLAB, 18 lineslayout/ layoutRoot.m - SCwave_Tracking/
tools/ , Java, 17 linesuicomponent/ HyperlinkListenerImp.jav a - SCwave_Tracking/
tools/ , MATLAB, 68 linesuicomponent/ createScreenshot.m - SCwave_Tracking/
tools/ , MATLAB, 775 linesuicomponent/ uicomponent.m - SCwave_Tracking/
tracking_framework.m , MATLAB, 280 lines, 2 matches - grpDualSC.m, MATLAB, 390 lines
- grpSCAnalysis.m, MATLAB, 673 lines, 2 matches
- grpTwoP_SCIC_ROIs.m, MATLAB, 286 lines
- twoP_SCIC_AnalysisROIs.m
, MATLAB, 119 lines, 2 matches
The paper's code and data availability statement is in the Data section.
Tracing map
Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.
What the map holds:
- 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
- 338 scripts, each with its path and the digest of its content;
- 9 matches between paragraphs of the paper and lines of the code (method lexical-v1);
- neither the text of the paper nor the code itself.
Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.
Data
Datasets cited
- geo:GSE224407, at NCBI GEO; found in the text, “Analysis of snRNAseq Data”
Data Availability Statement
The data that support the findings of this study are available from the corresponding author upon reasonable request.
Reproduced under the paper's license (CC BY-NC), from the paper cited above.
Data Availability Statement
The data that support the findings of this study are available from the corresponding author upon reasonable request. All original code has been deposited on github (https://
The data that support the findings of this study are available from the corresponding author upon reasonable request.
Reproduced under the paper's license (CC BY-NC), from the paper cited above.
Versions
The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.
Version 2, 28 September 2026
- Publisher: n/a → Wiley
Version 1, 28 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 9 authors, 7 keywords, 14 MeSH terms, 5 funders, 74 references.
Cite
This paper
Kellner, V., Parker, P., Heo, D., Mi, X., Coen, M., Yu, G., Saher, G., Goff, L. A., & Bergles, D. E. (2026). Conservation of Neuron-Astrocyte Correlated Activity in Developing Sensory Pathways. Glia, 74(5), e70141. https://
BibTeX
@article{kellner2026cons
author = {Kellner, Vered and Parker, Patrick and Heo, Dongeun and Mi, Xuelong and Coen, Mikhail and Yu, Guoqiang and Saher, Gesine and Goff, Loyal A and Bergles, Dwight E},
title = {{Conservation of Neuron-Astrocyte Correlated Activity in Developing Sensory Pathways}},
journal = {Glia},
year = {2026},
month = may,
volume = {74},
number = {5},
pages = {e70141},
publisher = {Wiley},
issn = {0894-1491},
doi = {10.1002/
url = {https://
pmid = {41889203},
pmcid = {PMC13022517}
}
RIS
TY - JOUR
AU - Kellner, Vered
AU - Parker, Patrick
AU - Heo, Dongeun
AU - Mi, Xuelong
AU - Coen, Mikhail
AU - Yu, Guoqiang
AU - Saher, Gesine
AU - Goff, Loyal A
AU - Bergles, Dwight E
TI - Conservation of Neuron-Astrocyte Correlated Activity in Developing Sensory Pathways
T2 - Glia
J2 - Glia
PY - 2026
DA - 2026/
VL - 74
IS - 5
SP - e70141
SN - 0894-1491
PB - Wiley
DO - 10.1002/
UR - https://
LA - en
ER -
CSL-JSON
{
"id": "10.1002/
"type": "article-journal",
"title": "Conservation of Neuron-Astrocyte Correlated Activity in Developing Sensory Pathways",
"container-title": "Glia",
"author": [
{
"family": "Kellner",
"given": "Vered"
},
{
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"given": "Patrick"
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{
"family": "Heo",
"given": "Dongeun"
},
{
"family": "Mi",
"given": "Xuelong"
},
{
"family": "Coen",
"given": "Mikhail"
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{
"family": "Yu",
"given": "Guoqiang"
},
{
"family": "Saher",
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},
{
"family": "Goff",
"given": "Loyal A"
},
{
"family": "Bergles",
"given": "Dwight E"
}
],
"container-title-short":
"volume": "74",
"issue": "5",
"page": "e70141",
"DOI": "10.1002/
"PMID": "41889203",
"PMCID": "PMC13022517",
"ISSN": "0894-1491",
"publisher": "Wiley",
"URL": "https://
"language": "en",
"issued": {
"date-parts": [
[
2026,
5,
1
]
]
}
}
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