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Intra-MRI Head Motion Tracking and Correction: A Quantitative In Vivo Evaluation Framework.

Code ↔ Paper

The paper beside its authors' code: matches between them have not been computed for this paper yet.

Paper

Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC

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The authors' code

Python · 18 lines · 425 B · MIT

  1. import sys
  3. if sys.version_info < (3, 10):
  4. def __recon_placeholder(*args, **kwargs):
  5. raise RuntimeError(
  6. "mocokit requires Python >= 3.10. Detected Python {}.{}. "
  7. "Please run your code/tests with a Python 3.10+ interpreter.".format(
  8. sys.version_info.major, sys.version_info.minor
  9. )
  10. )
  12. Recon = __recon_placeholder
  13. else:
  14. from .recon import Recon # type: ignore
  17. __all__ = ["Recon"]
  18. __version__ = "0.1.0"

__init__.py at commit 523a9a9, under MIT · at the source

Overview

Authors: Zakaria Zariry1,2, Franck Lamberton3,4, Robert Frost5,6, Thomas Gaass7, Thomas Troalen8, Holly Rayson1,2, Jakob M. Slipsager7, Nathalie Richard1,2, Andre van der Kouwe5,6, James Bonaiuto1,2, Bassem Hiba1,2
ORCID iDs: Zakaria Zariry, Franck Lamberton, Robert Frost, Thomas Troalen, Jakob M. Slipsager, Andre van der Kouwe, James Bonaiuto, Bassem Hiba
  1. CNRS, Institute of Cognitive Sciences Marc Jeannerod Bron France
  2. Université Claude Bernard, Lyon 1 Villeurbanne France
  3. Cermep, CNRS/UAR 3453 Lyon France
  4. SFR Santé Lyon‐Est, CNRS UAR3453, INSERM US7, Université Lyon 1 Lyon France
  5. Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital Charlestown Massachusetts USA
  6. Department of Radiology Harvard Medical School Boston Massachusetts USA
  7. TracInnovations Ballerup Denmark
  8. Siemens Healthcare SAS Courbevoie France
Institutions: Lyon 1 Université (France); Centre National de la Recherche Scientifique (France); Institut des Sciences Cognitives Marc Jeannerod (France); Institut des Sciences Cognitives (France); Inserm (France); Centre d'Exploration et de Recherche Médicale par Emission de Positons (France); Structure Fédérative de Recherche Santé Lyon Est (France); Harvard University (United States); Massachusetts General Hospital (United States); Athinoula A. Martinos Center for Biomedical Imaging (United States)
Journal: NMR in biomedicine, volume 39, issue 9, article e70368
Dates: received 11 February 2026; accepted 24 July 2026; published online 3 August 2026; in print September 2026
Type: Research article · Language: English
License: CC BY-NC-ND
Identifiers: DOI 10.1002/nbm.70368 · PMID 42548153 · PMCID PMC13434190 · OpenAlex W7172400152
Open access: hybrid, a free copy (OpenAlex)
Status: code verified
Categories: structural MRI / diffusion (modality), human (organism), methods / tools (subfield)
Methods: Preprocessing, Statistics, fMRI & imaging, Physiology & signal measures
Keywords: brain MRI, fat navigator, markerless optical system, motion artifacts, motion correction, movement tracking
MeSH: Head*, Head Movements*, Magnetic Resonance Imaging*, Adult, Artifacts, Brain, Female, Humans, Male, Motion, Motion Capture, Reproducibility of Results, Signal-To-Noise Ratio (* major topic)
Topic: Advanced MRI Techniques and Applications (Radiology, Nuclear Medicine and Imaging, Medicine), according to OpenAlex
Funding: European Research Council (ERC Consolidator Grant 864550); Labex Cortex (ANR‐11‐LABX‐0042); U.S. Department of Health & Human Services | NIH | National Institute of Biomedical Imaging and Bioengineering (NIBIB) (R21EB029641, R01EB035560); U.S. Department of Health & Human Services | NIH | Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) (R01HD110152)
Citations: not cited yet (Europe PMC); 45 references in the paper

Abstract

The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.

Repository

Its files are read in the Code ↔ Paper reader above.

zzariry/pyMocoKit

License: MIT
State: the link answers, verified on 26 September 2026
Evidence: files inventoried
Commit: 523a9a96c6d06ab7cebe7c85680f79f3db90a46d, 11 August 2026
Languages: Python (15)
Size: 25 files, 15 scripts
Software Heritage: not archived
Found in: “Data Availability Statement”
Holds: README, license file, CITATION.cff, environment (environment.yml, pyproject.toml, requirements-gpu.txt), tests, documentation
Not found: continuous integration
Tools: NumPy (10 files), SciPy (3 files), Matplotlib (2 files), PyTorch (2 files), CuPy (1 file), NiBabel (1 file), scikit-image (1 file)
Availability: 1 check, the latest on 26 September 2026: the link answers
  • 26 September 2026: the link answers
17 files
At the source: github.com/zzariry/pyMocoKit

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 15 scripts, each with its path and the digest of its content;
  • no match between paragraphs and code yet;
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

No dataset and no data link were found in the paper.

Code and data availability statement

The paper has a code and data availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:

  • it points to the authors' code: zzariry/pyMocoKit
  • it says that the data are available on request
  • it says that the code is available on request

Read it in the paper: doi.org/10.1002/nbm.70368.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 3, 28 September 2026

  • Publisher: n/a → Wiley

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 11 authors, 6 keywords, 13 MeSH terms, 4 funders, 40 references.

Cite

This paper

Zariry, Z., Lamberton, F., Frost, R., Gaass, T., Troalen, T., Rayson, H., Slipsager, J. M., Richard, N., van der Kouwe, A., Bonaiuto, J., & Hiba, B. (2026). Intra-MRI Head Motion Tracking and Correction: A Quantitative In Vivo Evaluation Framework. NMR in biomedicine, 39(9), e70368. https://doi.org/10.1002/nbm.70368

BibTeX

@article{zariry2026intra,
author = {Zariry, Zakaria and Lamberton, Franck and Frost, Robert and Gaass, Thomas and Troalen, Thomas and Rayson, Holly and Slipsager, Jakob M. and Richard, Nathalie and van der Kouwe, Andre and Bonaiuto, James and Hiba, Bassem},
title = {{Intra-MRI Head Motion Tracking and Correction: A Quantitative In Vivo Evaluation Framework}},
journal = {NMR in biomedicine},
year = {2026},
month = sep,
volume = {39},
number = {9},
pages = {e70368},
publisher = {Wiley},
issn = {0952-3480},
doi = {10.1002/nbm.70368},
url = {https://doi.org/10.1002/nbm.70368},
pmid = {42548153},
pmcid = {PMC13434190}
}

RIS

TY - JOUR
AU - Zariry, Zakaria
AU - Lamberton, Franck
AU - Frost, Robert
AU - Gaass, Thomas
AU - Troalen, Thomas
AU - Rayson, Holly
AU - Slipsager, Jakob M.
AU - Richard, Nathalie
AU - van der Kouwe, Andre
AU - Bonaiuto, James
AU - Hiba, Bassem
TI - Intra-MRI Head Motion Tracking and Correction: A Quantitative In Vivo Evaluation Framework
T2 - NMR in biomedicine
J2 - NMR Biomed
PY - 2026
DA - 2026/09/01
VL - 39
IS - 9
SP - e70368
SN - 0952-3480
PB - Wiley
DO - 10.1002/nbm.70368
UR - https://doi.org/10.1002/nbm.70368
LA - en
ER -

CSL-JSON

{
"id": "10.1002/nbm.70368",
"type": "article-journal",
"title": "Intra-MRI Head Motion Tracking and Correction: A Quantitative In Vivo Evaluation Framework",
"container-title": "NMR in biomedicine",
"author": [
{
"family": "Zariry",
"given": "Zakaria"
},
{
"family": "Lamberton",
"given": "Franck"
},
{
"family": "Frost",
"given": "Robert"
},
{
"family": "Gaass",
"given": "Thomas"
},
{
"family": "Troalen",
"given": "Thomas"
},
{
"family": "Rayson",
"given": "Holly"
},
{
"family": "Slipsager",
"given": "Jakob M."
},
{
"family": "Richard",
"given": "Nathalie"
},
{
"family": "van der Kouwe",
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},
{
"family": "Bonaiuto",
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}
],
"container-title-short": "NMR Biomed",
"volume": "39",
"issue": "9",
"page": "e70368",
"DOI": "10.1002/nbm.70368",
"PMID": "42548153",
"PMCID": "PMC13434190",
"ISSN": "0952-3480",
"publisher": "Wiley",
"URL": "https://doi.org/10.1002/nbm.70368",
"language": "en",
"issued": {
"date-parts": [
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]
}
}

The tracing map gets a citation of its own once an author has validated it and it has a DOI.

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