OSCR

Template-Based Label Propagation for Mouse Brain MRI Skull Stripping.

Overview

Authors: Rui Gong1, Andrii Gegliuk2, Daria Sharapova2, Bhanu Sharma2, Yoshifumi Abe3, Ken Nakae4, Shin Ishii1, Sho Yagishita2
ORCID iDs: Rui Gong, Bhanu Sharma
  1. Integrated Systems Biology Laboratory, Department of Systems Science, Graduate School of Informatics, Kyoto University, Kyoto, 606-8501 Japan
  2. Laboratory of Structural Physiology, Center for Disease Biology and Integrative Medicine, Faculty of Medicine, The University of Tokyo, Tokyo, 113-0033 Japan
  3. Division of Brain Sciences, Institute for Advanced Medical Research, Keio University School of Medicine, Tokyo, 160-8582 Japan
  4. Graduate School of Engineering, University of Fukui, Fukui, 910-8507 Japan
Institutions: The University of Tokyo (Japan); Keio University (Japan); University of Fukui (Japan); Kyoto University (Japan)
Journal: Neuroinformatics, volume 24, issue 2, article 27
Dates: received 17 March 2026; accepted 22 April 2026; published online 1 May 2026; in print 2026
Type: Research article · Language: English
License: CC BY-NC-ND
Identifiers: DOI 10.1007/s12021-026-09785-2 · PMID 42065835 · PMCID PMC13135007 · OpenAlex W7159652896
Open access: hybrid, a free copy (OpenAlex)
Status: data only
Categories: structural MRI / diffusion (modality), mouse (organism), methods / tools (subfield)
Methods: Machine learning
Keywords: Mouse brain MRI, Skull stripping, Label propagation, Deep learning segmentation
MeSH: Brain*, Deep Learning*, Imaging, Three-Dimensional*, Magnetic Resonance Imaging*, Animals, Datasets as Topic, Mice, Skull (* major topic)
Topic: Medical Image Segmentation Techniques (Computer Vision and Pattern Recognition, Computer Science), according to OpenAlex
Funding: Japan Agency for Medical Research and Development (JP23wm0625001)
Citations: not cited yet (Europe PMC); 27 references in the paper

Abstract

The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.

Code

The paper links to its data, not to its authors' code: see the Data section.

Code availability statement

The paper has a code availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:

  • no repository, dataset or request procedure was recognized in it

Read it in the paper: doi.org/10.1007/s12021-026-09785-2.

Tracing map

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Data

Datasets cited

Data availability statement

The paper has a data availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:

Read it in the paper: doi.org/10.1007/s12021-026-09785-2.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 2, 28 September 2026

  • Publisher: n/a → Springer Science+Business Media

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 8 authors, 4 keywords, 8 MeSH terms, 1 funder, 23 references.

Cite

This paper

Gong, R., Gegliuk, A., Sharapova, D., Sharma, B., Abe, Y., Nakae, K., Ishii, S., & Yagishita, S. (2026). Template-Based Label Propagation for Mouse Brain MRI Skull Stripping. Neuroinformatics, 24(2), 27. https://doi.org/10.1007/s12021-026-09785-2

BibTeX

@article{gong2026template,
author = {Gong, Rui and Gegliuk, Andrii and Sharapova, Daria and Sharma, Bhanu and Abe, Yoshifumi and Nakae, Ken and Ishii, Shin and Yagishita, Sho},
title = {{Template-Based Label Propagation for Mouse Brain MRI Skull Stripping}},
journal = {Neuroinformatics},
year = {2026},
month = may,
volume = {24},
number = {2},
pages = {27},
publisher = {Springer Science+Business Media},
issn = {1539-2791},
doi = {10.1007/s12021-026-09785-2},
url = {https://doi.org/10.1007/s12021-026-09785-2},
pmid = {42065835},
pmcid = {PMC13135007}
}

RIS

TY - JOUR
AU - Gong, Rui
AU - Gegliuk, Andrii
AU - Sharapova, Daria
AU - Sharma, Bhanu
AU - Abe, Yoshifumi
AU - Nakae, Ken
AU - Ishii, Shin
AU - Yagishita, Sho
TI - Template-Based Label Propagation for Mouse Brain MRI Skull Stripping
T2 - Neuroinformatics
J2 - Neuroinformatics
PY - 2026
DA - 2026/05/01
VL - 24
IS - 2
SP - 27
SN - 1539-2791
PB - Springer Science+Business Media
DO - 10.1007/s12021-026-09785-2
UR - https://doi.org/10.1007/s12021-026-09785-2
LA - en
ER -

CSL-JSON

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"language": "en",
"issued": {
"date-parts": [
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}

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