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Developmental manganese exposure, but not concurrent lead, alters social processing selectively in male mice.

Code ↔ Paper

The paper beside its authors' code: matches between them have not been computed for this paper yet.

Paper

Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC

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The authors' code

Shell · 10 lines · 295 B · MIT

  1. # usage:
  2. # extractSJfromGTF.sh in.gtf > out.sj
  3. #
  4. # assumes transcript_id in the 12th field of GTF
  5. #
  6. awk '$3=="exon" {print $12,$1,$4,$5,$7}' $1 |\
  7. sort -k1,1V -k2,2V -k3,3n |\
  8. awk 'BEGIN {OFS="\t"} {if (t==$1) {print $2,e1+1,$3-1,$5}; e1=$4;t=$1 }' |\
  9. sort -k1,1V -k2,2n -k3,3n -k4,4 | uniq

extractSJfromGTF.sh at commit b1edc12, under MIT · at the source

Overview

Authors: Anna Maria Tartaglione1, Oyku Dinckol1, Giorgia Macchioni1,2, Ettore Meccia3, Grete Francesca Privitera4, Byron Fuentes3, Eleonora Parlanti3, Anna Pino3, Alfredo Pulvirenti4, Laura Ricceri1, Gemma Calamandrei1
  1. Centre for Behavioral Sciences and Mental Health, Istituto Superiore di Sanità, Rome, Italy
  2. Department of Physiology and Pharmacology “Vittorio Erspamer”, Sapienza Università di Roma, Rome, Italy
  3. Department of Environment and Health, Istituto Superiore di Sanità, Rome, Italy
  4. Department of Clinical and Experimental Medicine, Bioinformatics Unit, University of Catania, Catania, Italy
Journal: iScience, volume 29, issue 6, article 116123
Dates: received 24 July 2025; accepted 10 April 2026; published online 4 June 2026
Type: Research article · Language: English
License: CC BY-NC-ND
Identifiers: DOI 10.1016/j.isci.2026.116123 · PMID 42305584 · PMCID PMC13265901 · OpenAlex W7163566809
Open access: gold, a free copy (OpenAlex)
Status: code verified
Categories: mouse (organism), developmental (subfield)
Methods: Statistics
Keywords: rodent behavior, environmental health, biological sciences, behavioral neuroscience
Topic: Heavy Metal Exposure and Toxicity (Health, Toxicology and Mutagenesis, Environmental Science), according to OpenAlex
Funding: Horizon 2020 Framework Programme; European Commission Marie Sklodowska-Curie Actions (766251); H2020 Marie Skłodowska-Curie Actions
Citations: not cited yet (Europe PMC); 102 references in the paper

Abstract

The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.

Repository

Its files are read in the Code ↔ Paper reader above.

alexdobin/STAR

License: MIT
State: the link answers, verified on 27 September 2026
Evidence: files inventoried
Commit: b1edc1208d91a53bf40ebae8669f71d50b994851, 25 January 2024
Languages: C++ (160), C/C++ (133), C (34), Shell (1), MATLAB (1)
Size: 389 files, 329 scripts
Software Heritage: not archived
Found in: the resources table
Holds: README, license file, environment (extras/docker/Dockerfile), continuous integration, documentation
Not found: CITATION.cff, tests
Availability: 1 check, the latest on 27 September 2026: the link answers
  • 27 September 2026: the link answers
331 files

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 329 scripts, each with its path and the digest of its content;
  • no match between paragraphs and code yet;
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

Datasets cited

Code and data availability statement

The paper has a code and data availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:

  • it points to a dataset: NCBI GEO GSE303190
  • it says that the data are available on request
  • it says that the code is available on request

Read it in the paper: doi.org/10.1016/j.isci.2026.116123.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 2, 28 September 2026

  • Authors: added Anna Maria Tartaglione (0000-0002-9761-8098); Laura Ricceri (0000-0001-9850-2284); removed Anna Maria Tartaglione; Laura Ricceri

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 11 authors, 4 keywords, 3 funders, 100 references.

Cite

This paper

Tartaglione, A. M., Dinckol, O., Macchioni, G., Meccia, E., Privitera, G. F., Fuentes, B., Parlanti, E., Pino, A., Pulvirenti, A., Ricceri, L., & Calamandrei, G. (2026). Developmental manganese exposure, but not concurrent lead, alters social processing selectively in male mice. iScience, 29(6), 116123. https://doi.org/10.1016/j.isci.2026.116123

BibTeX

@article{tartaglione2026developmental,
author = {Tartaglione, Anna Maria and Dinckol, Oyku and Macchioni, Giorgia and Meccia, Ettore and Privitera, Grete Francesca and Fuentes, Byron and Parlanti, Eleonora and Pino, Anna and Pulvirenti, Alfredo and Ricceri, Laura and Calamandrei, Gemma},
title = {{Developmental manganese exposure, but not concurrent lead, alters social processing selectively in male mice}},
journal = {iScience},
year = {2026},
month = jun,
volume = {29},
number = {6},
pages = {116123},
publisher = {Elsevier},
issn = {2589-0042},
doi = {10.1016/j.isci.2026.116123},
url = {https://doi.org/10.1016/j.isci.2026.116123},
pmid = {42305584},
pmcid = {PMC13265901}
}

RIS

TY - JOUR
AU - Tartaglione, Anna Maria
AU - Dinckol, Oyku
AU - Macchioni, Giorgia
AU - Meccia, Ettore
AU - Privitera, Grete Francesca
AU - Fuentes, Byron
AU - Parlanti, Eleonora
AU - Pino, Anna
AU - Pulvirenti, Alfredo
AU - Ricceri, Laura
AU - Calamandrei, Gemma
TI - Developmental manganese exposure, but not concurrent lead, alters social processing selectively in male mice
T2 - iScience
J2 - iScience
PY - 2026
DA - 2026/06/04
VL - 29
IS - 6
SP - 116123
SN - 2589-0042
PB - Elsevier
DO - 10.1016/j.isci.2026.116123
UR - https://doi.org/10.1016/j.isci.2026.116123
LA - en
ER -

CSL-JSON

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