Beyond neural oscillations: Stress-related aperiodic activity and aperiodic-oscillatory spectral covariation.
The 3 matches · 1 of them tie a paragraph to a whole file, not to given lines: a weak match, whose lines are not tinted
- [1] § STAR★Methods › Method details › Electroencephalography acquisition, preprocessing, spectral decomposition ↔ Scripts/aperiodic_preprocessing.py, lines 66–120 · score 0.98 · peak width limit, 12–30 Hz, 2–40 Hz, 8–12 Hz, peak height, power spectral density
- [2] § STAR★Methods › Quantification and statistical analysis ↔ Scripts/Stress.R, the whole file · a weak match · score 0.53 · perceived stress, Gaussian, identity, family, pairwise, GAM
- [3] § STAR★Methods › Quantification and statistical analysis ↔ Scripts/Covariation.R, lines 246–304 · score 0.52 · aperiodic oscillatory, family, GAM, covariates, slope, exponent
Paper
Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC
The paper is loaded when this pane is shown.
The authors' code
Python · 120 lines · 4.7 KB · MIT · 1 match
- #%%
- import glob
- import mne
- import pandas as pd
- import numpy as np
- from fooof import FOOOF
- from scipy.signal import welch
- workingpath = 'D:\\aperiod\\'
- segmentcode = [56, 63, 78]
- segment = ['baseline', 'training', 'stress']
- segmentlength = [5, 5, 5]
- roi_channels = ['Fp1', 'Fp2', 'Fz', 'F4', 'F3', 'F8', 'F7', 'Cz', 'C4', 'C3', 'T4', 'T3', 'Pz', 'P4', 'P3', 'P8', 'P7', 'O2', 'O1']
- subjectlist = []
- no_subject = len(glob.glob(workingpath + "eeg\\*.vhdr"))
- for i in range(0, no_subject):
- subjectlist.append(glob.glob(workingpath + "eeg\\*.vhdr")[i][-9:-5])
- subjectlist.sort()
- with open('fooof_results.txt', 'w') as f:
- f.write("Subject\tsegment\tROI\tOffset\tExponent\tR2\tMAE\tResidual_Delta\tResidual_Theta\tResidual_Alpha\tResidual_Beta\tDelta\tTheta\tAlpha\tBeta\t\n")
- for subject in subjectlist:
- filepathevent = workingpath + 'eeg\\' + str(subject) + '.vhdr'
- filepath = workingpath + 'eeg_clean\\' + str(subject) + '.edf'
- raw = mne.io.read_raw_brainvision(filepathevent, misc='auto', scale=1.0, preload=True, verbose=None)
- raw_clean = mne.io.read_raw_edf(filepath, preload=True, verbose=None, stim_channel='Status')
- raw_clean._data *= 1e6
- eventcoding = pd.read_csv((workingpath + 'master_eventsII.txt'), delimiter='\t', header=0)
- events = mne.find_events(raw, stim_channel="TRIGGER")
- tempeventdf = pd.DataFrame(events)
- tempeventdf = tempeventdf.loc[:, (tempeventdf != 0).any(axis=0)]
- tempeventdf = tempeventdf.loc[:, (tempeventdf != 47831).any(axis=0)]
- tempeventdf.columns = range(tempeventdf.shape[1])
- tempeventdf = tempeventdf.rename(columns={0: 'trigger_time', 1: 'Code'})
- tempeventdf = tempeventdf[tempeventdf['Code'] >= 50]
- eventdf = pd.merge(eventcoding, tempeventdf, on='Code', how='inner')
- for s in range(0, len(segment)):
- starttime = eventdf[eventdf['Code'] == segmentcode[s]]['trigger_time'].values[0]
- if segment[s] == 'baseline':
- starttime = starttime + (15 * 60 * 500)
- for roi in roi_channels:
- rawdata = raw_clean.get_data(roi)
- filterdata = rawdata[0]
- data = filterdata[starttime:starttime + (segmentlength[s] * 60 * 500)]
- freqs, psd = welch(
- data,
- fs=500,
- window='hann',
- nperseg=1000,
- noverlap=500,
- scaling='density',
- average='mean',
- detrend='constant'
- )
- df = pd.DataFrame({'Frequency_Hz': freqs, 'PSD': psd})
- df.to_csv('D:\\aperiod\\export_eeg_psd\\' + segment[s] + '\\' + subject + '_' + roi + '.csv', index=False)
- fm = FOOOF(
- peak_width_limits=[1, 6],
- max_n_peaks=6,
- min_peak_height=0.05,
- peak_threshold=1.5,
- aperiodic_mode='fixed'
- )
- fm.fit(freqs, psd, [2, 40])
- offset, exponent = fm.aperiodic_params_
- aperiodic_freqs = fm.freqs
- aperiodic_fit = fm._ap_fit
- df_aperiod = pd.DataFrame({'Frequency_Hz': aperiodic_freqs, 'PSD': aperiodic_fit})
- df_aperiod.to_csv('D:\\aperiod\\export_eeg_aperiod\\' + segment[s] + '\\' + subject + '_' + roi + '.csv', index=False)
- mask = freqs > 0
- freqs = freqs[mask]
- psd = psd[mask]
- aperiodic_fit_full = offset - exponent * np.log10(freqs)
- peak_only_psd = np.log10(psd) - aperiodic_fit_full
- with open('fooof_results.txt', 'a') as f:
- f.write(str(subject) + '\t')
- f.write(str(segment[s]) + '\t')
- f.write(str(roi) + '\t')
- f.write(str(offset) + '\t')
- f.write(str(exponent) + '\t')
- f.write(str(fm.r_squared_) + '\t')
- f.write(str(fm.error_) + '\t')
- bands = {
- 'delta': (1, 4),
- 'theta': (4, 8),
- 'alpha': (8, 12),
- 'beta': (12, 30)
- }
- for band_name, (fmin, fmax) in bands.items():
- mask = (freqs >= fmin) & (freqs < fmax)
- band_power = np.mean(peak_only_psd[mask])
- with open('fooof_results.txt', 'a') as f:
- f.write(str(band_power) + '\t')
- for band_name, (fmin, fmax) in bands.items():
- mask = (freqs >= fmin) & (freqs < fmax)
- band_power = np.mean(psd[mask])
- with open('fooof_results.txt', 'a') as f:
- f.write(str(band_power) + '\t')
- with open('fooof_results.txt', 'a') as f:
- f.write('\n')
aperiodic_preprocessing.py at commit 5b93e6d, under MIT · at the source
Overview
- Laboratory of Neuropsychology and Human Neuroscience, Department of Psychology, The University of Hong Kong, Hong Kong, China
- InnoCentre of Clinical Neuropsychology, The University of Hong Kong, Hong Kong, China
Abstract
The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.
Repositories
Its files are read in the Code ↔ Paper reader above, with 3 matches between paragraphs and lines of code.
alvinleekarfye/alvin-aperiodic-stressinduction-analysis-2026
5b93e6d5e2f4094afe1063ef2cc8f7e5250cfbeb, 6 July 2026Availability: 1 check, the latest on 27 September 2026: the link answers
- 27 September 2026: the link answers
16 files
- Scripts/
Alpha.R , R, 158 lines - Scripts/
Aperiod.R , R, 131 lines - Scripts/
Beta.R , R, 158 lines - Scripts/
CWB.R , R, 271 lines - Scripts/
Covariation.R , R, 357 lines, 1 match - Scripts/
Delta.R , R, 168 lines - Scripts/
MIST.R , R, 79 lines - Scripts/
Offset.R , R, 158 lines - Scripts/
PSD.R , R, 104 lines - Scripts/
R2.R , R, 129 lines - Scripts/
Stress.R , R, 48 lines, 1 match - Scripts/
Theta.R , R, 131 lines - Scripts/
aperiodic_preprocessing. , Python, 120 lines, 1 matchpy - Scripts/
eeg_cleaning.m , MATLAB, 24 lines - LICENSE, License, 21 lines
- README.md, Text, 11 lines
Zenodo 21207822
Availability: 1 check, the latest on 27 September 2026: the link answers (HTTP 200)
- 27 September 2026: the link answers (HTTP 200)
16 files
- Scripts/
Alpha.R , R, 158 lines - Scripts/
Aperiod.R , R, 131 lines - Scripts/
Beta.R , R, 158 lines - Scripts/
CWB.R , R, 271 lines - Scripts/
Covariation.R , R, 357 lines - Scripts/
Delta.R , R, 168 lines - Scripts/
MIST.R , R, 79 lines - Scripts/
Offset.R , R, 158 lines - Scripts/
PSD.R , R, 104 lines - Scripts/
R2.R , R, 129 lines - Scripts/
Stress.R , R, 48 lines - Scripts/
Theta.R , R, 131 lines - Scripts/
aperiodic_preprocessing. , Python, 120 linespy - Scripts/
eeg_cleaning.m , MATLAB, 24 lines - LICENSE, License, 21 lines
- README.md, Text, 11 lines
craddm/eegutils
2b2dbe123b1fabaac414aa0f62b8259194d40e5f, 10 February 2026Availability: 1 check, the latest on 27 September 2026: the link answers
- 27 September 2026: the link answers
128 files
- R/
RcppExports.R , R, 15 lines - R/
ar-faster.R , R, 508 lines - R/
ar_for_ica.R , R, 280 lines - R/
artefact_rejection.R , R, 295 lines - R/
artefact_viewer.R , R, 160 lines - R/
baseline_correction.R , R, 406 lines - R/
channel_management.R , R, 878 lines - R/
check_items.R , R, 89 lines - R/
class_handling.R , R, 416 lines - R/
current_source_density.R , R, 397 lines - R/
data.R , R, 16 lines - R/
data_averaging.R , R, 441 lines - R/
data_combine.R , R, 604 lines - R/
data_epoching.R , R, 205 lines - R/
data_modifiers.R , R, 393 lines - R/
data_selection.R , R, 634 lines - R/
data_viewers.R , R, 430 lines - R/
deprecated.R , R, 7 lines - R/
df_converters.R , R, 422 lines - R/
dplyr-extensions.R , R, 350 lines - R/
eegUtils-package.R , R, 8 lines - R/
epoch_images.R , R, 480 lines - R/
epoch_queries.R , R, 97 lines - R/
erp_scalp.R , R, 447 lines - R/
event_codes.R , R, 243 lines - R/
fieldtrip_structures.R , R, 174 lines - R/
file_bva_import.R , R, 229 lines - R/
file_export.R , R, 205 lines - R/
file_io.R , R, 1,056 lines - R/
filtering.R , R, 525 lines - R/
frequency_analysis.R , R, 335 lines - R/
frequency_plotting.R , R, 353 lines - R/
get_scalpmap.R , R, 394 lines - R/
ggplot2-extensions.R , R, 663 lines - R/
glm_fitting.R , R, 340 lines - R/
import_erplab.R , R, 83 lines - R/
parse_hdf5.R , R, 219 lines - R/
plot_butterfly.R , R, 342 lines - R/
plot_difference.R , R, 91 lines - R/
plot_gfp.R , R, 73 lines - R/
plot_timecourse.R , R, 572 lines - R/
print_functions.R , R, 222 lines - R/
run_ICA.R , R, 443 lines - R/
signal_decomposition.R , R, 227 lines - R/
stat_classes.R , R, 66 lines - R/
summarise_eeg.R , R, 149 lines - R/
summary_contour.R , R, 447 lines - R/
tfr_analysis.R , R, 963 lines - R/
topoplot.R , R, 629 lines - R/
utils.R , R, 114 lines - R/
view_ica.R , R, 360 lines - R/
zzz.R , R, 64 lines - README.rmd, R, 89 lines
- data-raw/
proc_elecs_internal.R , R, 16 lines - docs/
articles/ , JavaScript, 12 linesdata_structures_files/ header-attrs-2.6/ header-attrs.js - docs/
articles/ , JavaScript, 12 linesdata_structures_files/ header-attrs-2.7/ header-attrs.js - docs/
articles/ , JavaScript, 12 linesdata_structures_files/ header-attrs-2.9/ header-attrs.js - docs/
articles/ , JavaScript, 12 lineseegUtils_files/ header-attrs-2.6/ header-attrs.js - docs/
articles/ , JavaScript, 12 lineseegUtils_files/ header-attrs-2.7/ header-attrs.js - docs/
articles/ , JavaScript, 12 linesepoch-handling_files/ header-attrs-2.6/ header-attrs.js - docs/
articles/ , JavaScript, 12 linesepoch-handling_files/ header-attrs-2.7/ header-attrs.js - docs/
articles/ , JavaScript, 12 lineslinear_modelling/ linear_modelling_files/ header-attrs-2.6/ header-attrs.js - docs/
articles/ , JavaScript, 12 lineslinear_modelling/ linear_modelling_files/ header-attrs-2.7/ header-attrs.js - docs/
articles/ , JavaScript, 12 linestime-frequency-analysis_ files/ header-attrs-2.6/ header-attrs.js - docs/
articles/ , JavaScript, 12 linestime-frequency-analysis_ files/ header-attrs-2.7/ header-attrs.js - docs/
articles/ , JavaScript, 12 linestopoplot/ topoplot_files/ header-attrs-2.6/ header-attrs.js - docs/
articles/ , JavaScript, 12 linestopoplot/ topoplot_files/ header-attrs-2.7/ header-attrs.js - docs/
bootstrap-toc.js , JavaScript, 159 lines - docs/
dev/ , JavaScript, 12 linesarticles/ data_structures_files/ header-attrs-2.9/ header-attrs.js - docs/
dev/ , JavaScript, 12 linesarticles/ eegUtils_files/ header-attrs-2.9/ header-attrs.js - docs/
dev/ , JavaScript, 12 linesarticles/ epoch-handling_files/ header-attrs-2.9/ header-attrs.js - docs/
dev/ , JavaScript, 12 linesarticles/ linear_modelling/ linear_modelling_files/ header-attrs-2.9/ header-attrs.js - docs/
dev/ , JavaScript, 12 linesarticles/ time-frequency-analysis_ files/ header-attrs-2.10/ header-attrs.js - docs/
dev/ , JavaScript, 12 linesarticles/ time-frequency-analysis_ files/ header-attrs-2.9/ header-attrs.js - docs/
dev/ , JavaScript, 12 linesarticles/ topoplot/ topoplot_files/ header-attrs-2.9/ header-attrs.js - docs/
dev/ , JavaScript, 159 linesbootstrap-toc.js - docs/
dev/ , JavaScript, 7 linesdeps/ bootstrap-5.3.1/ bootstrap.bundle.min.js - docs/
dev/ , JavaScript, 5 linesdeps/ bootstrap-toc-1.0.1/ bootstrap-toc.min.js - docs/
dev/ , JavaScript, 7 linesdeps/ clipboard.js-2.0.11/ clipboard.min.js - docs/
dev/ , JavaScript, 7 linesdeps/ headroom-0.11.0/ headroom.min.js - docs/
dev/ , JavaScript, 7 linesdeps/ headroom-0.11.0/ jQuery.headroom.min.js - docs/
dev/ , JavaScript, 7,407 linesdeps/ jquery-3.6.0/ jquery-3.6.0.js - docs/
dev/ , JavaScript, 2 linesdeps/ jquery-3.6.0/ jquery-3.6.0.min.js - docs/
dev/ , JavaScript, 7 linesdeps/ search-1.0.0/ autocomplete.jquery.min. js - docs/
dev/ , JavaScript, 9 linesdeps/ search-1.0.0/ fuse.min.js - docs/
dev/ , JavaScript, 7 linesdeps/ search-1.0.0/ mark.min.js - docs/
dev/ , JavaScript, 85 linesdocsearch.js - docs/
dev/ , JavaScript, 14 lineskatex-auto.js - docs/
dev/ , JavaScript, 85 lineslightswitch.js - docs/
dev/ , JavaScript, 162 linespkgdown.js - docs/
docsearch.js , JavaScript, 85 lines - docs/
pkgdown.js , JavaScript, 108 lines - src/
RcppExports.cpp , C++, 62 lines - src/
base_mat.cpp , C++, 37 lines - src/
ica_test.cpp , C++, 17 lines - tests/
testthat.R , R, 3 lines - tests/
testthat/ , R, 64 linestest-ICA.R - tests/
testthat/ , R, 8 linestest-data_averaging.R - tests/
testthat/ , R, 139 linestest-data_combine.R - tests/
testthat/ , R, 51 linestest-dply.R - tests/
testthat/ , R, 48 linestest-eeg_combine.R - tests/
testthat/ , R, 20 linestest-epoch_images.R - tests/
testthat/ , R, 68 linestest-ggplot.R - tests/
testthat/ , R, 12 linestest-glm.R - tests/
testthat/ , R, 48 linestest-import-bdf.R - tests/
testthat/ , R, 7 linestest-parse_hdf5.R - tests/
testthat/ , R, 11 linestest-plot_gfp.R - tests/
testthat/ , R, 124 linestest-plotting_funs.R - tests/
testthat/ , R, 12 linestest-signal_decompositio n.R - tests/
testthat/ , R, 43 linestest-topoplot.R - tests/
testthat/ , R, 29 linestest-utils.R - tests/
testthat/ , R, 32 linestest_artefact_rejection. R - tests/
testthat/ , R, 13 linestest_baseline_correction .R - tests/
testthat/ , R, 17 linestest_channel_management. R - tests/
testthat/ , R, 11 linestest_downsample.R - tests/
testthat/ , R, 25 linestest_filtering.R - tests/
testthat/ , R, 58 linestest_frequency_analysis. R - tests/
testthat/ , R, 65 linestest_frequency_plotting. R - tests/
testthat/ , R, 24 linestest_referencing.R - tests/
testthat/ , R, 108 linestest_selections.R - vignettes/
data_structures.Rmd , R, 117 lines - vignettes/
eegUtils.Rmd , R, 176 lines - vignettes/
epoch-handling.Rmd , R, 106 lines - vignettes/
linear_modelling/ , R, 120 lineslinear_modelling.Rmd - vignettes/
time-frequency-analysis. , R, 69 linesRmd - vignettes/
topoplot/ , R, 115 linestopoplot.Rmd - LICENSE, License, 2 lines
- README.md, Text, 133 lines
The paper's code and data availability statement is in the Data section.
Tracing map
Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.
What the map holds:
- 3 repositories of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
- 154 scripts, each with its path and the digest of its content;
- 3 matches between paragraphs of the paper and lines of the code (method lexical-v1);
- neither the text of the paper nor the code itself.
Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.
Data
No dataset and no data link were found in the paper.
Code and data availability statement
The paper has a code and data availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:
- it points to the authors' code: alvinleekarfye/
alvin-aperiodic-stressin , Zenodo 21207822duction-analysis-2026 - it says that the data are available on request
- it says that the code is available on request
Read it in the paper: doi.org/10.1016/j.isci.2026.116936.
Versions
The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.
Version 1, 27 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 4 authors, 3 keywords, 2 funders, 64 references, 4 RRIDs.
Cite
This paper
Lee, K. F. A., Liang, L., Asharaf, S. T., & Lee, T. M. (2026). Beyond neural oscillations: Stress-related aperiodic activity and aperiodic-oscillatory spectral covariation. iScience, 29(8), 116936. https://
BibTeX
@article{lee2026beyond,
author = {Lee, Kar Fye Alvin and Liang, Li and Asharaf, Suhail T. and Lee, Tatia M.C.},
title = {{Beyond neural oscillations: Stress-related aperiodic activity and aperiodic-oscillatory spectral covariation}},
journal = {iScience},
year = {2026},
month = aug,
volume = {29},
number = {8},
pages = {116936},
publisher = {Elsevier},
issn = {2589-0042},
doi = {10.1016/
url = {https://
pmid = {42620688},
pmcid = {PMC13486866}
}
RIS
TY - JOUR
AU - Lee, Kar Fye Alvin
AU - Liang, Li
AU - Asharaf, Suhail T.
AU - Lee, Tatia M.C.
TI - Beyond neural oscillations: Stress-related aperiodic activity and aperiodic-oscillatory spectral covariation
T2 - iScience
J2 - iScience
PY - 2026
DA - 2026/
VL - 29
IS - 8
SP - 116936
SN - 2589-0042
PB - Elsevier
DO - 10.1016/
UR - https://
LA - en
ER -
CSL-JSON
{
"id": "10.1016/
"type": "article-journal",
"title": "Beyond neural oscillations: Stress-related aperiodic activity and aperiodic-oscillatory spectral covariation",
"container-title": "iScience",
"author": [
{
"family": "Lee",
"given": "Kar Fye Alvin"
},
{
"family": "Liang",
"given": "Li"
},
{
"family": "Asharaf",
"given": "Suhail T."
},
{
"family": "Lee",
"given": "Tatia M.C."
}
],
"container-title-short":
"volume": "29",
"issue": "8",
"page": "116936",
"DOI": "10.1016/
"PMID": "42620688",
"PMCID": "PMC13486866",
"ISSN": "2589-0042",
"publisher": "Elsevier",
"URL": "https://
"language": "en",
"issued": {
"date-parts": [
[
2026,
8,
10
]
]
}
}
The tracing map gets a citation of its own once an author has validated it and it has a DOI.
Similar papers
The papers with a page that share the most with this one: the tools found in their code, their categories, datasets, cited references and authors, the rarest counting most.
- [1] doi:10.1093/cercor/bhag113 [code]
- Long-term reliability and stability of parameterized resting state EEG: evidence from a five-year follow-up.Journal: Cerebral cortex (New York, N.Y. : 1991)In common: specparam (formerly FOOOF), emmeans, MNE-Python, 5 other tools, EEG, 4 references
- [2] doi:10.1111/psyp.70376 [code]
- Changes in Aperiodic (1/
f Slope) Activity During a Picture-Word Interference Task: Effects of Congruency and Sequence Manipulations. Journal: PsychophysiologyIn common: eegUtils, data.table, patchwork, 2 other tools, EEG, 5 references - [3] doi:10.1093/braincomms/fcag351 [code]
- Time-resolved aperiodic dynamics in event segmentation in attention-deficit/
hyperactivity disorder. Journal: Brain communicationsIn common: specparam (formerly FOOOF), EEGLAB, ggplot2, 4 other tools, EEG, 4 references - [4] doi:10.1162/imag.a.1169 [code]
- Diazepam alters the shape of alpha oscillations recorded from human cortex using EEG.Journal: Imaging neuroscience (Cambridge, Mass.)In common: specparam (formerly FOOOF), EEGLAB, emmeans, 6 other tools, EEG, 2 references
- [5] doi:10.1111/ejn.70255 [code]
- A Systematic Review of Aperiodic Neural Activity in Clinical InvestigationsJournal: n/aIn common: specparam (formerly FOOOF), pandas, NumPy, EEG, 7 references
- [6] doi:10.7554/elife.100605 [code]
- Age-related changes in ‘cortical’ 1/
f dynamics are linked to cardiac activity Journal: n/aIn common: specparam (formerly FOOOF), MNE-Python, pandas, 2 other tools, 6 references - [7] doi:10.1093/bioinformatics/btag592 [code]
- Network-based stratification of allele-specific expression reveals patient subgroups in Huntington's disease.Journal: Bioinformatics (Oxford, England)In common: mgcv, emmeans, Plotly, 7 other tools
- [8] doi:10.1038/s41467-026-74824-0 [code]
- Learning regularities in noise engages both neural predictive activity and representational changes.Journal: Nature communicationsIn common: mgcv, emmeans, MNE-Python, 5 other tools, 1 reference
- [9] doi:10.3390/bioengineering13030323 [code]
- Scale-Free Neurodynamics as Functional Fingerprint of Brain Regions.Journal: Bioengineering (Basel, Switzerland)In common: MNE-Python, pandas, SciPy, 1 other tool, 6 references
- [10] doi:10.1371/journal.pone.0355165 [code]
- Pupillary dynamics during hands-off L2 driving and transitions of control under high cognitive load.Journal: PloS oneIn common: mgcv, emmeans, Plotly, 4 other tools, 1 reference
Contribute
The authors of this paper can claim it, correct its record and validate its tracing map, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to OSCR's own machine, which answers it; your account page follows them.
Sign in with ORCID to claim this paper as one of its authors, correct its record or validate its tracing map: when the paper's metadata lists your ORCID iD, you are recognized at once. Maintainers of its code: sign in with GitHub, then claim the repository on your account page.
Claim this paper
Correct its record
Say what each link of this record is, remove the ones that are not the paper's, add the ones that are missing. The correction becomes a new version of the record, in its Versions section.
Validate its tracing map
You validate the map as this page shows it: 3 repositories of the authors' code, each at its verified commit and with its license, 154 scripts, and 3 matches between paragraphs and code (see the Code and Map sections). It then receives a DOI on Zenodo, with you (your ORCID iD) and OSCR as its creators; the code itself is not deposited.
The map's fingerprint: sha256:b475fe33838d11cc…
Add the badge to its README
The badge links the code to this page. Copy one of these into the README of the paper's code: only you decide where it goes, and nothing is changed for you.
Markdown
[, paste the snippet at the top, then “Commit changes…” and, to review it first, “Create a new branch and start a pull request”. You open the pull request; OSCR asks for no permission.
Request its removal
To ask OSCR to remove this record, the copies of its authors' scripts or its tracing map, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).
Discussion, reproductions, activity
Discussion: questions and error reports about this paper and its code, from signed-in readers and its authors. It opens with sign-in.
Reproductions: reports from readers who ran the authors' code: what they reproduced, with which environment, commit and data. It opens with sign-in.
Activity: what happens around this paper: new versions of its record, its map's validation, discussions and reproductions. It opens with sign-in.
