Childhood white matter organization predicts adolescent internalizing problems among youth with and without ADHD.
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- ---
- title: "JHU_ADHD_analysis"
- author: "Mervyn Singh"
- date: "27/07/2026"
- output:
- word_document: default
- pdf_document: default
- ---
- ```{r setup, include=FALSE}
- knitr::opts_chunk$set(echo = TRUE)
- ```
- # DATA SET-UP
- ## Load required packages into your working environment
- ```{r, include=FALSE, echo=FALSE}
- rm(list = (ls()))
- packages <- c("tidyverse","ggplot2","psych","broom","lme4","lmerTest","gridExtra","ggpubr","emmeans","corrplot","cowplot","mediation","ggsignif","jmvReadWrite","sjstats")
- if (length(setdiff(packages, rownames(installed.packages()))) > 0) {
- install.packages(setdiff(packages, rownames(installed.packages())))
- }
- lapply(packages, library, character.only = TRUE)
- ```
- # AGE DISTRIBUTION PLOT
- ```{r}
- # load data
- agedat = read.csv("agedat.csv")
- str(agedat)
- ```
- ```{r}
- # reformat vars
- agedat = agedat %>% mutate_at(c(1,4:5), as.factor)
- ```
- ```{r}
- # convert data to long format
- long <- agedat %>% gather(wave,AGE,-ID1,-SEX,-GROUP) %>%
- mutate(wave = gsub("AGE_","",wave))
- # prepare data for plotting
- df_plot <- long %>% mutate(AGE = round(as.numeric(AGE),2)) %>% arrange(AGE) %>%
- mutate(ID1 = factor(ID1, unique(ID1)))
- ```
- ```{r}
- # plot age distribution
- plot_age <- ggplot(df_plot, aes(y=ID1, x=AGE, group=ID1, colour=GROUP,shape=SEX))+
- geom_line(size=.6,alpha=0.6) +
- ylab("Participants") + #Specify titles for y-axis...
- xlab("Age") + #x-axis...
- geom_point(size=2) +
- scale_color_manual(values=custom_colors) +
- theme_bw() +
- theme(axis.line = element_line(colour = "black"),
- axis.text.y = element_blank(),
- axis.ticks.y = element_blank(),
- legend.position="none",
- panel.grid.major = element_blank(),
- panel.grid.minor = element_blank(),
- panel.border = element_blank(),
- panel.background = element_blank()) + theme(legend.position="right") +
- theme(text = element_text(size = 20))
- plot_age
- ```
- ```{r}
- # save
- ggsave("age_distribution_JHU.png", plot_age)
- ```
- \nextpage
- # BRAIN-BEHAVIORAL ASSOCIATIONS
- ## Load datafile into working environment
- ```{r, include=FALSE, echo=FALSE}
- dat = read.csv("data_13_12.csv")
- ```
- ## View dataframe structure
- ```{r, include=FALSE, echo=FALSE}
- str(dat)
- ```
- ## format variables
- ```{r, include=FALSE, echo=FALSE}
- # categorical vars
- dat = dat %>% mutate_at(c(4,7),as.factor)
- # Recode factors
- levels(dat$GROUP) = list(TD_Controls = "0", ADHD = "1")
- levels(dat$SEX) = list(female = "0", male = "1")
- custom_colors <- c("ADHD" = "#F8766D", "TD_Controls" = "#00BFC4")
- # continuous vars
- dat = dat %>% mutate_at(c(1:3,5:6,8:55),as.numeric)
- # re-check data structure
- str(dat)
- ```
- \nextpage
- # BASC PARENT REPORT ANALYSIS
- ## Association between T1 residualised FBA METRICS and T2 residualised BASC PARENT-REPORT DEP scores (controlling for AGE & TCV)
- ```{r}
- # UNCINATE FASCICULUS
- # Scatterplot of Right UF FC (controlling for Age and TCV) with BASC Depression scores : Parent report (split into groups)
- p1 = dat %>%
- drop_na(GROUP) %>%
- ggplot(aes(x=UF_R_DEP_BASCP_R, y=T2_BASCP_DEP_R, color=GROUP)) +
- geom_point() +
- scale_colour_manual(values=custom_colors) +
- geom_smooth(method=lm, se=F) +
- xlab("Right UF FC") +
- ylab("BASC-P Depression (T2)") +
- theme_bw() +
- theme_minimal() +
- theme(axis.line = element_line(colour = "black"),
- legend.position="none",
- panel.grid.major = element_blank(),
- panel.grid.minor = element_blank(),
- panel.border = element_blank(),
- panel.background = element_blank()) +
- theme(legend.position="right") +
- theme(legend.position="right") +
- theme(text = element_text(size = 20)) +
- stat_cor(
- aes(label = paste(..r.label.., ..p.label.., sep = "~`,`~")),
- method = "pearson",
- r.accuracy = 0.001,
- p.accuracy = 0.001,
- label.x.npc = "left",
- label.y.npc = "top",
- size = 6
- )
- p1
- ```
- ```{r}
- # Scatterplot of Left UF FC (controlling for Age and TCV) with BASC Depression scores : Parent report (split into groups)
- p2 = dat %>%
- drop_na(GROUP) %>%
- ggplot(aes(x=UF_L_DEP_BASCP_R, y=T2_BASCP_DEP_R, color=GROUP)) +
- geom_point() +
- scale_colour_manual(values=custom_colors) +
- geom_smooth(method=lm, se=F) +
- xlab("Left UF FC") +
- ylab("BASC-P Depression (T2)") +
- theme_bw() +
- theme_minimal() +
- theme(axis.line = element_line(colour = "black"),
- legend.position="none",
- panel.grid.major = element_blank(),
- panel.grid.minor = element_blank(),
- panel.border = element_blank(),
- panel.background = element_blank()) +
- theme(legend.position="right") +
- theme(legend.position="right") +
- theme(text = element_text(size = 20)) +
- stat_cor(
- aes(label = paste(..r.label.., ..p.label.., sep = "~`,`~")),
- method = "pearson",
- r.accuracy = 0.001,
- p.accuracy = 0.001,
- label.x.npc = "left",
- label.y.npc = "top",
- size = 6
- )
- p2
- ```
- ```{r}
- # join both plots
- jp1 = ggpubr::ggarrange(p1,p2,common.legend = TRUE, legend = "bottom")
- jp1
- # save image
- ggsave("UF_FBA_parent_report_scatterplot.png", jp1,width = 10, height = 5, dpi = 300, units = "in", device='png')
- ```
- ```{r}
- # INFERIOR LONGITUIDNAL FASCICULUS
- # Scatterplot of Right ILF FC (controlling for Age and TCV) with BASC Depression scores : Parent report (split into groups)
- p3 = dat %>%
- drop_na(GROUP) %>%
- ggplot(aes(x=ILF_R_DEP_BASCP_R, y=T2_BASCP_DEP_R, color=GROUP)) +
- geom_point() +
- scale_colour_manual(values=custom_colors) +
- geom_smooth(method=lm, se=F) +
- xlab("Right ILF FC") +
- ylab("BASC-P Depression (T2)") +
- theme_bw() +
- theme_minimal() +
- theme(axis.line = element_line(colour = "black"),
- legend.position="none",
- panel.grid.major = element_blank(),
- panel.grid.minor = element_blank(),
- panel.border = element_blank(),
- panel.background = element_blank()) +
- theme(legend.position="right") +
- theme(legend.position="right") +
- theme(text = element_text(size = 20)) +
- stat_cor(
- aes(label = paste(..r.label.., ..p.label.., sep = "~`,`~")),
- method = "pearson",
- r.accuracy = 0.001,
- p.accuracy = 0.001,
- label.x.npc = "left",
- label.y.npc = "top",
- size = 6
- )
- p3
- ```
- ```{r}
- # Scatterplot of Left ILF FC (controlling for Age and TCV) with BASC Depression scores : Parent report (split into groups)
- p4 = dat %>%
- drop_na(GROUP) %>%
- ggplot(aes(x=ILF_L_DEP_BASCP_R, y=T2_BASCP_DEP_R, color=GROUP)) +
- geom_point() +
- scale_colour_manual(values=custom_colors) +
- geom_smooth(method=lm, se=F) +
- xlab("Left ILF FC") +
- ylab("BASC-P Depression (T2)") +
- theme_bw() +
- theme_minimal() +
- theme(axis.line = element_line(colour = "black"),
- legend.position="none",
- panel.grid.major = element_blank(),
- panel.grid.minor = element_blank(),
- panel.border = element_blank(),
- panel.background = element_blank()) +
- theme(legend.position="right") +
- theme(legend.position="right") +
- theme(text = element_text(size = 20)) +
- stat_cor(
- aes(label = paste(..r.label.., ..p.label.., sep = "~`,`~")),
- method = "pearson",
- r.accuracy = 0.001,
- p.accuracy = 0.001,
- label.x.npc = "left",
- label.y.npc = "top",
- size = 6
- )
- p4
- ```
- ```{r}
- # join both plots
- jp2 = ggpubr::ggarrange(p3,p4,common.legend = TRUE, legend = "bottom")
- jp2
- # save image
- ggsave("ILF_FBA_parent_report_scatterplot.png", jp2,width = 10, height = 5, dpi = 300, units = "in", device='png')
- ```
- ## Covarying for CBCL Depression scores at T1
- ```{r}
- # UNCINATE FASCICULUS
- # Scatterplot of Right UF FC (controlling for Age and TCV) with BASC Depression scores : Parent report (split into groups)
- p5 = dat %>%
- drop_na(GROUP) %>%
- ggplot(aes(x=UF_R_DEP_BASCP_CBCL_R, y=T2_BASCP_DEP_CBCL_R, color=GROUP)) +
- geom_point() +
- scale_colour_manual(values=custom_colors) +
- geom_smooth(method=lm, se=F) +
- xlab(" Right UF FC") +
- ylab("BASC-P Depression (T2)") +
- labs(caption = "covarying for CBCL scores at T1") +
- theme_bw() +
- theme_minimal() +
- theme(axis.line = element_line(colour = "black"),
- legend.position="none",
- panel.grid.major = element_blank(),
- panel.grid.minor = element_blank(),
- panel.border = element_blank(),
- panel.background = element_blank()) +
- theme(legend.position="bottom") + theme(text = element_text(size = 20))+
- stat_cor(
- aes(label = paste(..r.label.., ..p.label.., sep = "~`,`~")),
- method = "pearson",
- r.accuracy = 0.001,
- p.accuracy = 0.001,
- label.x.npc = "left",
- label.y.npc = "top",
- size = 6
- )
- p5
- ```
- ```{r}
- # Scatterplot of Left UF FC (controlling for Age and TCV) with BASC Depression scores : Parent report (split into groups)
- p6 = dat %>%
- drop_na(GROUP) %>%
- ggplot(aes(x=UF_L_DEP_BASCP_CBCL_R, y=T2_BASCP_DEP_CBCL_R, color=GROUP)) +
- geom_point() +
- scale_colour_manual(values=custom_colors) +
- geom_smooth(method=lm, se=F) +
- xlab("Left UF FC") +
- ylab("BASC-P Depression (T2)") +
- labs(caption = "covarying for CBCL scores at T1") +
- theme_bw() +
- theme_minimal() +
- theme(axis.line = element_line(colour = "black"),
- legend.position="none",
- panel.grid.major = element_blank(),
- panel.grid.minor = element_blank(),
- panel.border = element_blank(),
- panel.background = element_blank()) +
- theme(legend.position="right") +
- theme(legend.position="right") +
- theme(legend.position="bottom") + theme(text = element_text(size = 20))+
- stat_cor(
- aes(label = paste(..r.label.., ..p.label.., sep = "~`,`~")),
- method = "pearson",
- r.accuracy = 0.001,
- p.accuracy = 0.001,
- label.x.npc = "left",
- label.y.npc = "top",
- size = 6
- )
- p6
- ```
- ```{r}
- # join both plots
- jp3 = ggpubr::ggarrange(p5,p6,labels = c("A", "B"),common.legend = TRUE, legend = "bottom")
- jp3
- # save image
- ggsave("UF_FBA_parent_report_CBCL_scatterplot.png",height = 5, dpi = 300, units = "in", device='png')
- ```
- \nextpage
- # BASC CHILD REPORT ANALYSIS
- ## Association between T1 residualised FBA METRICS and T2 residualised BASC CHILD-REPORT DEP scores (controlling for AGE & TCV)
- ```{r}
- # UNCINATE FASCICULUS
- # Scatterplot of Right UF FC (controlling for Age and TCV) with BASC Depression scores : Child report (split into groups)
- c1 = dat %>%
- drop_na(GROUP) %>%
- ggplot(aes(x=UF_R_DEP_BASSC_R, y=T2_BASCC_DEP_R, color=GROUP)) +
- geom_point() +
- scale_colour_manual(values=custom_colors) +
- geom_smooth(method=lm, se=F) +
- xlab("Right UF FC") +
- ylab("BASC-C Depression (T2)") +
- theme_bw() +
- theme_minimal() +
- theme(axis.line = element_line(colour = "black"),
- legend.position="none",
- panel.grid.major = element_blank(),
- panel.grid.minor = element_blank(),
- panel.border = element_blank(),
- panel.background = element_blank()) +
- theme(legend.position="right") +
- theme(legend.position="right") + theme(text = element_text(size = 20))+
- stat_cor(
- aes(label = paste(..r.label.., ..p.label.., sep = "~`,`~")),
- method = "pearson",
- r.accuracy = 0.001,
- p.accuracy = 0.001,
- label.x.npc = "left",
- label.y.npc = "top",
- size = 6
- )
- c1
- ```
- ```{r}
- # Scatterplot of Left UF FC (controlling for Age and TCV) with BASC Depression scores : Child report (split into groups)
- c2 = dat %>%
- drop_na(GROUP) %>%
- ggplot(aes(x=UF_L_DEP_BASCC_R, y=T2_BASCC_DEP_R, color=GROUP)) +
- geom_point() +
- scale_colour_manual(values=custom_colors) +
- geom_smooth(method=lm, se=F) +
- xlab("Left UF FC") +
- ylab("BASC-C Depression (T2)") +
- theme_bw() +
- theme_minimal() +
- theme(axis.line = element_line(colour = "black"),
- legend.position="none",
- panel.grid.major = element_blank(),
- panel.grid.minor = element_blank(),
- panel.border = element_blank(),
- panel.background = element_blank()) +
- theme(legend.position="right") +
- theme(legend.position="right") + theme(text = element_text(size = 20))+
- stat_cor(
- aes(label = paste(..r.label.., ..p.label.., sep = "~`,`~")),
- method = "pearson",
- r.accuracy = 0.001,
- p.accuracy = 0.001,
- label.x.npc = "left",
- label.y.npc = "top",
- size = 6
- )
- c2
- ```
- ```{r}
- # join both plots
- jc1 = ggpubr::ggarrange(c1,c2, common.legend = TRUE, legend = "bottom", nrow = 1)
- jc1
- # save image
- ggsave("UF_FBA_child_report_DEP_scatterplot.png", jc1,width = 10, height = 5, dpi = 300, units = "in", device='png')
- ```
- ```{r}
- # Scatterplot of Left UF FC (controlling for Age and TCV) with BASC Anxiety scores : Child report (split into groups)
- c3 = dat %>%
- drop_na(GROUP) %>%
- ggplot(aes(x=UF_L_ANX_BASSC_R, y=T2_BASCC_ANX_R, color=GROUP)) +
- geom_point() +
- scale_colour_manual(values=custom_colors) +
- geom_smooth(method=lm, se=F) +
- xlab("Left UF FC") +
- ylab("BASC-C Anxiety (T2)") +
- theme_bw() +
- theme_minimal() +
- theme(axis.line = element_line(colour = "black"),
- legend.position="none",
- panel.grid.major = element_blank(),
- panel.grid.minor = element_blank(),
- panel.border = element_blank(),
- panel.background = element_blank()) +
- theme(legend.position="bottom") +
- theme(legend.position="bottom") + theme(text = element_text(size = 20))+
- stat_cor(
- aes(label = paste(..r.label.., ..p.label.., sep = "~`,`~")),
- method = "pearson",
- r.accuracy = 0.001,
- p.accuracy = 0.001,
- label.x.npc = "left",
- label.y.npc = "top",
- size = 6
- )
- c3
- # save image
- ggsave("UF_FBA_child_report_ANX_scatterplot.png", c3,width = 10, height = 5, dpi = 300, units = "in", device='png')
- ```
- ## Covarying for CBCL Depression scores at T1
- ```{r}
- # UNCINATE FASCICULUS
- # Scatterplot of Left UF FC (controlling for Age and TCV) with BASC Depression scores : Child report (split into groups)
- c4 = dat %>%
- drop_na(GROUP) %>%
- ggplot(aes(x=UF_L_DEP_BASCC_CBCL_R, y=T2_BASCC_DEP_CBCL_R, color=GROUP)) +
- geom_point() +
- scale_colour_manual(values=custom_colors) +
- geom_smooth(method=lm, se=F) +
- xlab("Left UF FC") +
- ylab("BASC-C Depression (T2)") +
- labs(caption = "covarying for CBCL scores at T1") +
- theme_bw() +
- theme_minimal() +
- theme(axis.line = element_line(colour = "black"),
- legend.position="none",
- panel.grid.major = element_blank(),
- panel.grid.minor = element_blank(),
- panel.border = element_blank(),
- panel.background = element_blank()) +
- theme(legend.position="right") +
- theme(legend.position="right")+
- theme(legend.position="bottom") + theme(text = element_text(size = 20))+
- stat_cor(
- aes(label = paste(..r.label.., ..p.label.., sep = "~`,`~")),
- method = "pearson",
- r.accuracy = 0.001,
- p.accuracy = 0.001,
- label.x.npc = "left",
- label.y.npc = "top",
- size = 6
- )
- c4
- # save image
- ggsave("UF_FBA_child_report_CBCL_scatterplot.png", c4)
- ```
JHU_analysis_FBA_Associations_27July2026.Rmd at commit c1bdb5a, no license · at the source
Overview
- School of Psychology, Deakin University, Burwood, Australia
- Center for Neurodevelopmental and Imaging Research, Kennedy Krieger Institute, Baltimore, MD, USA
- Department of Neuropsychology, Kennedy Krieger Institute, Baltimore, MD, USA
- Department of Psychiatry and Behavioral Sciences, Johns Hopkins University School of Medicine, Baltimore, MD, USA
- National Institute on Drug Abuse, Department of Health and Human Services, Rockville, MD, USA
- Murdoch Children's Research Institute, Melbourne, Australia
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA
Abstract
This study investigated whether childhood white matter organization in those with and without ADHD predicted the emergence of internalizing problems in adolescence. Further, we aimed to determine whether (i) this longitudinal effect was mediated by motor skill level, and/
Reproduced under the paper's license (CC BY), from the paper cited above.
Repository
Its files are read in the Code ↔ Paper reader above.
chydeDeakin/Hyde_et_al_2026
c1bdb5a7bce37b4503537c1d94a46bf9a854ea46, 27 July 2026Availability: 1 check, the latest on 26 September 2026: the link answers
- 26 September 2026: the link answers
1 file
- JHU_analysis_FBA_Associa
tions_27July2026.Rmd , R, 504 lines
Tracing map
Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.
What the map holds:
- 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
- 1 script, each with its path and the digest of its content;
- no match between paragraphs and code yet;
- neither the text of the paper nor the code itself.
Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.
Data
No dataset and no data link were found in the paper.
Data availability
Data will be made available on request.
Reproduced under the paper's license (CC BY), from the paper cited above.
Versions
The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.
Version 1, 27 September 2026: the first record
Recorded: type, language, journal, volume, pages, dates, 8 authors, 6 keywords, 12 MeSH terms, 3 funders, 42 references.
Cite
This paper
Hyde, C., Fuelscher, I., Rosch, K., Seymour, K., Crocetti, D., Silk, T., Singh, M., & Mostofsky, S. (2026). Childhood white matter organization predicts adolescent internalizing problems among youth with and without ADHD. NeuroImage. Clinical, 51, 104053. https://
BibTeX
@article{hyde2026childho
author = {Hyde, C. and Fuelscher, I. and Rosch, K.S. and Seymour, K.E. and Crocetti, D. and Silk, T. and Singh, M. and Mostofsky, S.H.},
title = {{Childhood white matter organization predicts adolescent internalizing problems among youth with and without ADHD}},
journal = {NeuroImage. Clinical},
year = {2026},
month = sep,
volume = {51},
pages = {104053},
publisher = {Elsevier},
issn = {2213-1582},
doi = {10.1016/
url = {https://
pmid = {42691943},
pmcid = {PMC13571588}
}
RIS
TY - JOUR
AU - Hyde, C.
AU - Fuelscher, I.
AU - Rosch, K.S.
AU - Seymour, K.E.
AU - Crocetti, D.
AU - Silk, T.
AU - Singh, M.
AU - Mostofsky, S.H.
TI - Childhood white matter organization predicts adolescent internalizing problems among youth with and without ADHD
T2 - NeuroImage. Clinical
J2 - Neuroimage Clin
PY - 2026
DA - 2026/
VL - 51
SP - 104053
SN - 2213-1582
PB - Elsevier
DO - 10.1016/
UR - https://
LA - en
ER -
CSL-JSON
{
"id": "10.1016/
"type": "article-journal",
"title": "Childhood white matter organization predicts adolescent internalizing problems among youth with and without ADHD",
"container-title": "NeuroImage. Clinical",
"author": [
{
"family": "Hyde",
"given": "C."
},
{
"family": "Fuelscher",
"given": "I."
},
{
"family": "Rosch",
"given": "K.S."
},
{
"family": "Seymour",
"given": "K.E."
},
{
"family": "Crocetti",
"given": "D."
},
{
"family": "Silk",
"given": "T."
},
{
"family": "Singh",
"given": "M."
},
{
"family": "Mostofsky",
"given": "S.H."
}
],
"container-title-short":
"volume": "51",
"page": "104053",
"DOI": "10.1016/
"PMID": "42691943",
"PMCID": "PMC13571588",
"ISSN": "2213-1582",
"publisher": "Elsevier",
"URL": "https://
"language": "en",
"issued": {
"date-parts": [
[
2026,
9,
1
]
]
}
}
The tracing map gets a citation of its own once an author has validated it and it has a DOI.
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