The Foundational Data Initiative for Parkinson Disease: Enabling efficient translation from genetic maps to mechanism.

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FOUNDINPD

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FOUNDINPD/METH

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FOUNDINPD/ATACseq_bulk

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FOUNDINPD/HiC_Pipelines

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FOUNDINPD/bulk_RNASeq

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FOUNDINPD/exceRpt_smallRNAseq

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FOUNDINPD/FOUNDIN_scRNA

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FOUNDINPD/FOUNDIN_scATAC

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FOUNDINPD/SCRN_EQTL_v2

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Tools found in the code: BEDTools, caret, ComplexHeatmap, cowplot, data.table, ggplot2, glmnet, Harmony, Monocle 3, pandas, patchwork, reshape2, Seurat, tidyverse

OverviewAuthors: Elisangela Bressan, Xylena Reed, Vikas Bansal, Elizabeth Hutchins, Melanie M. Cobb, Michelle G. Webb, Eric Alsop, Francis P. Grenn, Anastasia Illarionova, Natalia Savytska, Ivo Violich, Stefanie Broeer, Noémia Fernandes, Ramiyapriya Sivakumar, Alexandra Beilina, Kimberley J. Billingsley, Joos Berghausen, Caroline B. Pantazis, Vanessa Pitz, Dhairya Pateland 23 other authorsKensuke Daida, Bessie Meechoovet, Rebecca Reiman, Amanda Courtright-Lim, Amber Logemann, Jerry Antone, Mariya Barch, Robert Kitchen, Yan Li, Clifton L. Dalgard, The American Genome Center, Patrizia Rizzu, Dena G. Hernandez, Brooke E. Hjelm, Mike Nalls, J. Raphael Gibbs, Steven Finkbeiner, Mark R. Cookson, Kendall Van Keuren-Jensen, David W. Craig, Andrew B. Singleton, Peter Heutink, Cornelis Blauwendraat
Journal: Cell genomics
Published: 6 February 2023
Type: Research article
Status: code verified (how the code is found and verified)
DOI: 10.1016/j.xgen.2023.100261
License: CC BY
Institutions: German Center for Neurodegenerative Diseases (Germany), National Institutes of Health (United States), National Institute of Neurological Disorders and Stroke (United States), National Institute on Aging (United States), Translational Genomics Research Institute (United States), Gladstone Institutes (United States), University of Southern California (United States), Massachusetts General Hospital (United States), Uniformed Services University of the Health Sciences (United States), Data Tecnica International (United States) (United States), University of California, San Francisco (United States)
Categories: genetics / omics (modality), human (organism), Parkinson's (population), cellular / molecular (subfield)

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