Parkinson's

Population: 191 papers with a page, 98 of them with their authors' code.

Saturday, 26 September 2026 (1 paper)

[1] Code ↔ Paper doi: [paper, repository]

Beyond bacteria: a multi-omics view of the gut–brain axis in Parkinson’s disease

Journal: Frontiers in cellular and infection microbiology

Authors' code: hanhuiyeye/PD (no license), euniceokk/prisma (no license)

Status: code verified, 4 files readable, 4 matches

Friday, 25 September 2026 (1 paper)

[2] doi:10.1007/s00401-026-03082-7 [paper, data]

Deletion or immunotherapeutic blockade of FcγRIIb (CD32b) impairs α-Syn propagation in vivo.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

Friday, 18 September 2026 (1 paper)

[3] Code ↔ Paper doi:10.1523/eneuro.0283-26.2026 [paper, repository]

A Cortico-Basal Ganglia-Thalamic Network Model Linking Intermittent Postural Control to Sway-Related Beta-Band Oscillations.

Journal: eNeuro

Authors' code: nomura-taishin/cbgt-intermittent-postural-control (Apache-2.0)

Status: code verified, 12 files readable, 4 matches

Wednesday, 16 September 2026 (2 papers)

[4] Code ↔ Paper doi:10.1038/s41531-026-01531-4 [paper, repository]

Inconsistent subthalamic local field potential beta activity amid in- and antiphasic neuronal bursts.

Journal: NPJ Parkinson's disease

Authors' code: MaximilianScherer/2026_MS_beta_prevalence (no license), Zenodo 17951551 (CC-BY-4.0), Zenodo 17940236 (CC-BY-4.0)

Status: code verified, 72 files readable, 3 matches

[5] doi:10.1186/s40035-026-00577-x [paper, data]

Brain region-resolved pharmacodynamics of an antisense oligonucleotide targeting human SNCA 3'UTR in BAC-hSNCA rats.

Journal: Translational neurodegeneration

Status: data only, 3 datasets cited

Friday, 11 September 2026 (1 paper)

[6] Code ↔ Paper doi:10.1093/braincomms/fcag333 [paper, repository]

Development and application of a multi-task fusion model using susceptibility-weighted imaging-based substantia nigra and adjacent structures for prognostic prediction of subthalamic nucleus deep brain stimulation in Parkinson's disease.

Journal: Brain communications

Authors' code: ceasorcai/PD (no license)

Status: code verified, 3 files readable, 2 matches

Wednesday, 9 September 2026 (1 paper)

[7] doi:10.1007/s12640-026-00825-y [paper, data]

Atorvastatin Shows Limited Disease-Modifying Effects in an A53T α-Synuclein Mouse Model of Parkinson's Disease.

Journal: Neurotoxicity research

Status: data only, 1 dataset cited

Wednesday, 2 September 2026 (1 paper)

[8] Code ↔ Paper doi:10.1126/sciadv.aed2952 [paper, repository]

Activation of transposable elements is linked to a region- and cell type-specific interferon response in Parkinson's disease.

Journal: Science advances

Authors' code: Zenodo 7589548 (other-open), molecular-neurogenetics.github.io/truster (no license), Zenodo 17434560 (CC-BY-4.0), molecular-neurogenetics/pd_asap_garza2025 (MIT)

Status: code verified, 394 files readable, 17 matches

Tuesday, 1 September 2026 (4 papers)

[9] doi:10.3389/fnins.2026.1950353 [paper]

A neuron-distributed DEK integrates ac4C modification and neuroinflammation in pathogenesis of Parkinson disease: evidence from Mendelian randomization, multi-omics and <i>in vitro</i> validation.

Journal: Frontiers in neuroscience

Status: code on request

[10] Code ↔ Paper doi:10.1002/cns.71147 [paper, repository]

Unveiling the Distinctive Brain Functional Dynamics Between Parkinson's Disease and Progressive Supranuclear Palsy.

Journal: CNS neuroscience & therapeutics

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), Shijh123456/PD_PSP (no license)

Status: code verified, 70 files readable, 4 matches

[11] doi:10.1111/ejn.70666 [paper, data]

Resting State Functional Connectivity Among Cortical and Subcortical Grey Matter Structures Can Distinguish Fallers in Parkinson's Disease.

Journal: The European journal of neuroscience

Status: code on request, 2 datasets cited

[12] Code ↔ Paper doi:10.1093/brain/awag039 [paper, repository]

Mapping the causal chain from genetic risk variants to lipid dysmetabolism in Parkinson's disease.

Journal: Brain : a journal of neurology

Authors' code: ruthbpaula/PD_multiomics (no license)

Status: code verified, 6 files readable, 11 matches

Monday, 31 August 2026 (2 papers)

[13] Code ↔ Paper doi:10.1093/braincomms/fcag328 [paper, repository]

Subthalamic stimulation modulates working memory-related cortical dynamics in Parkinson's disease.

Journal: Brain communications

Authors' code: neuromti/stn-dbs-working-memory-eeg (MIT)

Status: code verified, 11 files readable, 7 matches

[14] Code ↔ Paper doi:10.3389/fnagi.2026.1931183 [paper, repository]

A validated workflow for paired total and small RNA sequencing from low-input submandibular gland biopsy specimens in <i>de novo</i> Parkinson's disease patients.

Journal: Frontiers in aging neuroscience

Authors' code: thelovelab/DESeq2 (no license)

Status: code verified, 52 files readable, 2 matches

Friday, 28 August 2026 (1 paper)

[15] doi:10.1093/braincomms/fcag329 [paper, data]

A meta-analysis of periodic and aperiodic electrophysiological features in Parkinson's disease.

Journal: Brain communications

Status: data only, 10 datasets cited

Thursday, 27 August 2026 (1 paper)

[16] Code ↔ Paper doi:10.1212/wnl.0000000000218472 [paper, repository]

Lesion-Level Subtypes of White Matter Hyperintensity Evolution Beyond Spatial Location.

Journal: Neurology

Authors' code: rglezgz/WMH-subtypes (no license)

Status: code verified, 8 files readable, 9 matches

Wednesday, 26 August 2026 (1 paper)

[17] doi:10.3389/fcimb.2026.1806356 [paper, data]

Global research trends in enteric nervous system and gut microbiota: a bibliometric analysis (2005-2025).

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

Monday, 24 August 2026 (1 paper)

[18] Code ↔ Paper doi:10.1073/pnas.2613593123 [paper, repository]

Calbindin stratifies midbrain dopaminergic neurons governing distinct aspects of locomotion.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: poulin-lab/Bolduc-et-al-2026_Calb1-paper (no license)

Status: code verified, 38 files readable, 6 matches

Friday, 21 August 2026 (1 paper)

[19] doi:10.1016/j.xcrm.2026.103001 [paper]

Cortical-to-pallidal beta cascade underlies network pathophysiology in Parkinson's disease.

Journal: Cell reports. Medicine

Status: code on request

Thursday, 20 August 2026 (1 paper)

[20] doi:10.1038/s41531-026-01537-y [paper]

Regional reduction of high-energy phosphorus metabolites characterizes the cerebellar subtype of multiple system atrophy.

Journal: NPJ Parkinson's disease

Status: code on request

Tuesday, 18 August 2026 (1 paper)

[21] Code ↔ Paper doi:10.1093/braincomms/fcag316 [paper, repository]

Structural, functional and neurochemical imaging mapping of non-motor symptoms in Parkinson's disease.

Journal: Brain communications

Authors' code: chiaracamastra/Coordinate-based-network-mapping (no license)

Status: empty repository, 1 file readable

Monday, 17 August 2026 (2 papers)

[22] doi:10.1002/advs.77175 [paper, data]

TAB2 Causes Neuronal Damage by Aggravating Microglia-Mediated Neuroinflammation in Parkinson's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[23] Code ↔ Paper doi:10.1371/journal.pcbi.1013942 [paper, repository]

Reconciling contradictory models of subthalamic nucleus contributions to basal ganglia beta oscillations.

Journal: PLoS computational biology

Authors' code: kanaptse/BG-Oscillation-Synergy-Suppression (no license)

Status: code verified, 18 files readable, 12 matches

Friday, 14 August 2026 (2 papers)

[24] Code ↔ Paper doi:10.64898/2026.08.12.26350419 [paper, repository]

Volitional deep brain stimulation following brain-computer interface training for Parkinson’s disease

Journal: medRxiv (preprint)

Authors' code: tepzhang/volitional_DBS (no license)

Status: code verified, 3 files readable, 2 matches

[25] doi:10.1038/s41467-026-76725-8 [paper, data]

TogoPhosTAC as a delivery-ready platform for targeted protein dephosphorylation.

Journal: Nature communications

Status: data only, 1 dataset cited

Thursday, 13 August 2026 (3 papers)

[26] doi:10.7554/elife.105386 [paper, data]

Parkinson's disease-associated <i>PINK1</i> loss disrupts ensheathing glia and causes dopaminergic neuron synapse loss.

Journal: eLife

Status: code on request, 1 dataset cited

[27] doi:10.1007/s11571-026-10526-z [paper]

A task-aligned multimodal machine learning framework for studying working memory dysfunction in Parkinson's disease.

Journal: Cognitive neurodynamics

Status: code on request

[28] Code ↔ Paper doi:10.3390/bioengineering13080917 [paper, repository]

Pilot Study Employing a Machine Learning Approach as a Potential Method for Predicting Parkinson's Disease Using Voice as a Digital Biomarker and the SHAP Approach for Feature Engineering.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: mehdi1366-com (no license)

Status: code verified

Tuesday, 11 August 2026 (3 papers)

[29] Code ↔ Paper doi:10.1016/j.ebiom.2026.106418 [paper, repository]

Corticostriatal glutamate mechanisms underlying beta synchrony and motor deficits via striatal NMDA receptors in Parkinson's disease.

Journal: EBioMedicine

Authors' code: ziruiwang0836/striatum-microcircuit (no license)

Status: code verified, 82 files readable

[30] Code ↔ Paper doi:10.1038/s41746-026-02946-2 [paper, repository]

Fully-automated sleep staging for Parkinson's disease and isolated REM sleep behavior disorder.

Journal: NPJ digital medicine

Authors' code: jesperstroem/U-Sleep-for-RBD-PD (no license)

Status: code verified, 48 files readable, 4 matches

[31] doi:10.3389/fnagi.2026.1788991 [paper, data]

Plasma multi-miRNA models classify Alzheimer's, Parkinson's, and Lewy body dementia.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

Monday, 10 August 2026 (3 papers)

[32] Code ↔ Paper doi:10.1073/pnas.2619797123 [paper, repository]

Selective loss of primary cilia and neurotrophic signaling in G51D α-synuclein mice highlights a common pathway to Parkinson's disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.5061/dryad.4xgxd25r0 (no license)

Status: code verified

[33] doi:10.1016/j.isci.2026.117185 [paper, data]

Impact of Amazonian dance on speech performance in people with Parkinson's disease.

Journal: iScience

Status: code on request, 2 datasets cited

[34] Code ↔ Paper doi:10.3389/fnmol.2026.1817096 [paper, repository]

EIF2S1-PELO co-expression architecture in human brain: pairing-family decomposition reveals constitutive transcriptional coupling and functional layer separation.

Journal: Frontiers in molecular neuroscience

Authors' code: nwharbert8-ui/eif2s1-translational-qc-hubsub (MIT), Zenodo 18626362 (MIT)

Status: code verified, 16 files readable, 20 matches

Sunday, 9 August 2026 (1 paper)

[35] doi:10.3390/ijms27167140 [paper, data]

Astrocytic HSP90AA1 Upregulation and Altered Synaptic Signaling in Parkinson's Disease: Transcriptomic Screening and In Vivo Validation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Thursday, 6 August 2026 (1 paper)

[36] doi:10.1038/s41467-026-76173-4 [paper, data]

α-Synuclein blocks endoplasmic reticulum co-translational protein translocation early in Parkinson's disease.

Journal: Nature communications

Status: data only, 1 dataset cited

Wednesday, 5 August 2026 (2 papers)

[37] Code ↔ Paper doi:10.1016/j.ebiom.2026.106400 [paper, repository]

Data-driven trajectories of atrophy explain clinical heterogeneity across Lewy body diseases.

Journal: EBioMedicine

Authors' code: ucl-usyd-transcend.github.io (no license)

Status: code verified

[38] doi:10.3389/fncel.2026.1901103 [paper]

Loss of epigenetic adaptation to a high-fat diet in alpha-synuclein transgenic mice.

Journal: Frontiers in cellular neuroscience

Status: data only

Tuesday, 4 August 2026 (1 paper)

[39] doi:10.1038/s41467-026-76183-2 [paper, data]

Vestibular nucleus stimulation for ameliorating locomotor dynamics in a Parkinsonian mouse model.

Journal: Nature communications

Status: code on request, 1 dataset cited

Monday, 3 August 2026 (1 paper)

[40] Code ↔ Paper doi:10.3389/fnins.2026.1803569 [paper, repository]

A user-friendly graphical user interface for paw touch classification in rodent cylinder testing.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 15750960 (CC-BY-4.0), tyjo22/a-user-friendly-gui-for-paw-touch-classification-in-rodent-cylinder-testing (no license)

Status: code verified, 2 files readable

Saturday, 1 August 2026 (5 papers)

[41] Code ↔ Paper doi:10.1093/brain/awaf466 [paper, repository]

Cortico-basal oscillations index naturalistic movements during deep brain stimulation.

Journal: Brain : a journal of neurology

Authors' code: openmind-consortium (no license)

Status: code verified

[42] doi:10.1002/cns.71043 [paper]

Multimodal Neuroimaging-Based Machine Learning Models Leveraging Cerebral Morphometry and Glymphatic Parameters Predict Short-Term Post-Programming STN-DBS Motor Response in Parkinson's Disease.

Journal: CNS neuroscience & therapeutics

Status: code on request

[43] doi:10.1111/nan.70097 [paper, data]

Transgenic A53T Mice Have Astrocytic α-Synuclein Aggregates in Dopamine and Striatal Regions.

Journal: Neuropathology and applied neurobiology

Status: data only, 2 datasets cited

[44] doi:10.1002/cns.71075 [paper, data]

Neuroprotective Role of E3 Ubiquitin Ligase TRIM2 in Parkinson's Disease: Attenuation of Oxidative Stress and Apoptosis via Promoting ELAVL1 Ubiquitination.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[45] Code ↔ Paper doi:10.1093/bioinformatics/btag553 [paper, repository]

Spatial-spectral fusion enables drug repositioning by capturing indirect and long-range associations in biological networks.

Journal: Bioinformatics (Oxford, England)

Authors' code: Juniper-cola/BIO_SSF (MIT)

Status: code verified, 14 files readable, 2 matches

Friday, 31 July 2026 (1 paper)

[46] doi:10.3390/metabo16080541 [paper, data]

Spatial Metabolomics and Single-Cell Virtual Knockout Screening Reveal Solanesol Improves Parkinson's Disease-like Pathology Based on Lipid Inflammation Mechanism.

Journal: Metabolites

Status: data only, 1 dataset cited

Wednesday, 29 July 2026 (1 paper)

[47] doi:10.3389/fnins.2026.1875642 [paper, data]

Convolutional neural networks in brain disease diagnosis: a unified review of Alzheimer's, Parkinson's, and brain tumor classification.

Journal: Frontiers in neuroscience

Status: data only, 7 datasets cited

Tuesday, 28 July 2026 (2 papers)

[48] doi:10.1038/s41531-026-01474-w [paper]

Oligomeric Alpha-Synuclein from neural-derived extracellular vesicles as possible biomarkers of non-motor symptoms in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[49] Code ↔ Paper doi:10.1038/s41467-026-75194-3 [paper, repository]

Leucine-rich repeat kinase 2 impairs the release sites of Parkinson's disease vulnerable dopamine axons.

Journal: Nature communications

Authors' code: curtain.proteo.info (no license), Zenodo 19930567 (CC-BY-4.0), Zenodo 20244434 (CC-BY-4.0), DombeckLab/lrrk2_photometry_analysis (MIT)

Status: code verified, 19 files readable, 7 matches

Saturday, 25 July 2026 (1 paper)

[50] doi:10.3390/antiox15080926 [paper, data]

NRF2 Deletion Results in Mobility Impairment in A53TSyn Model of Synucleinopathy.

Journal: Antioxidants (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 24 July 2026 (2 papers)

[51] doi:10.1371/journal.pone.0352503 [paper, data]

G-protein coupled receptor, signal and signal-transduction related transcript mapping in nigral volume and pigmented neurons reveals a potential deficit of nigral feedback signals associated with Parkinson's disease.

Journal: PloS one

Status: data only, 1 dataset cited

[52] Code ↔ Paper doi:10.3390/brainsci16080781 [paper, repository]

A Comparison of Machine Learning Models for Classification of Parkinson's Disease During a Working Memory and Sustained Attention Task.

Journal: Brain sciences

Authors' code: mercedesterry/EEG-and-Pupillary-Feature-Extraction-Toolbox (no license)

Status: dead link

Thursday, 23 July 2026 (2 papers)

[53] doi:10.1002/advs.76778 [paper, data]

A Blood-Derived Factor Rescues ALS: Platelet Factor 4 Activates OPTN-Dependent Autophagy to Clear SOD1 Aggregates Independently of PINK1.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 2 datasets cited

[54] doi:10.1186/s40035-026-00566-0 [paper, data]

Application of the Allen Human Brain Atlas in Alzheimer's disease and Parkinson's disease.

Journal: Translational neurodegeneration

Status: data only, 2 datasets cited

Tuesday, 21 July 2026 (2 papers)

[55] Code ↔ Paper doi:10.1038/s41467-026-74961-6 [paper, repository]

Spatial multi-omics identifies early synaptic pruning and context-specific dopaminergic vulnerability in synucleinopathies.

Journal: Nature communications

Authors' code: fstrueb/spatial_nigra (no license)

Status: code verified, 11 files readable, 9 matches

[56] Code ↔ Paper doi:10.1038/s41531-026-01466-w [paper, repository]

Dopamine-related alterations in functional brain network dynamic reconfiguration in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: GenLouvain/GenLouvain (BSD-2-Clause)

Status: code verified, 46 files readable, 2 matches

Saturday, 18 July 2026 (1 paper)

[57] Code ↔ Paper doi:10.1002/mrm.70514 [paper, repository]

Brain Clearance of Contrast Agent in Intravenous DCE-MRI Is Measurable and Cannot Be Explained by Clearance Across the BBB Alone.

Journal: Magnetic resonance in medicine

Authors' code: nimo-group/DCE-MRI-brain-clearance-2025 (no license)

Status: code verified, 6 files readable, 2 matches

Thursday, 16 July 2026 (3 papers)

[58] doi:10.1007/s10072-026-09234-7 [paper, data]

Creative thinking in Parkinson's disease: A systematic review and meta-analysis.

Journal: Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology

Status: data only, 1 dataset cited

[59] Code ↔ Paper doi:10.1371/journal.pone.0333158 [paper, repository]

Alpha-synuclein overexpression reduces neural activity within a basal ganglia vocal nucleus in a zebra finch model.

Journal: PloS one

Authors' code: supp:PMC13374917/pone.0333158.s010.zip (no license)

Status: code verified, 8 files readable, 3 matches

[60] doi:10.3390/antiox15070882 [paper, data]

<i>Lactobacillus reuteri</i> DSM 17938 and Its Supernatant Ameliorate Parkinson's Disease in Association with Modulation of Gut Microbiota and Its Tryptophan Metabolism.

Journal: Antioxidants (Basel, Switzerland)

Status: data only, 1 dataset cited

Wednesday, 15 July 2026 (1 paper)

[61] Code ↔ Paper doi:10.3389/frmbi.2026.1834726 [paper, repository]

Shotgun metagenomic analysis reveals taxonomic and functional alterations in the gut microbiome across prodromal and symptomatic Lewy body disease.

Journal: Frontiers in microbiomes

Authors' code: xiaowei-zhao-1111/LBD_Gut_Microbiome_2026 (no license)

Status: code verified, 9 files readable, 9 matches

Tuesday, 14 July 2026 (1 paper)

[62] doi:10.1002/ame2.70252 [paper, data]

Single-cell atlas of neuroglial dynamics in SNCA-A53T Parkinson's disease mouse model.

Journal: Animal models and experimental medicine

Status: data only, 1 dataset cited

Monday, 13 July 2026 (1 paper)

[63] Code ↔ Paper doi:10.1523/eneuro.0008-26.2026 [paper, repository]

Movement Disorder Patients with Depression Have Altered Corticostriatal Alpha-Beta Power Response to Reward and Loss.

Journal: eNeuro

Authors' code: qhelen/MD-Depression-Reward (no license)

Status: code verified, 9 files readable, 3 matches

Friday, 10 July 2026 (2 papers)

[64] Code ↔ Paper doi:10.1038/s41598-026-61801-2 [paper, repository]

Detection of early-stage Parkinson's disease using wearable sensors at multiple body locations and convolutional neural networks.

Journal: Scientific reports

Authors' code: Zenodo 20839352 (CC-BY-4.0), hyejin-choi1/early-pd-wearable-sensor-cnn (no license)

Status: code verified, 10 files readable, 7 matches

[65] doi:10.1186/s12951-026-04551-7 [paper, data]

The role of AI-assisted drug repurposing in neurological disorders: a systematic review of validation strategies, challenges and opportunities.

Journal: Journal of nanobiotechnology

Status: data only, 1 dataset cited

Thursday, 9 July 2026 (2 papers)

[66] doi:10.1038/s41591-026-04525-0 [paper]

Human embryonic stem cell-derived dopaminergic cells for Parkinson's disease: a phase 1/2 open-label trial.

Journal: Nature medicine

Status: code on request

[67] doi:10.3390/nu18142234 [paper, data]

Neuroprotective Effects of Lycopene in Parkinson's Disease Mice: Potential Modulation of DAT/SLC6A3-Mediated Dopaminergic Pathway.

Journal: Nutrients

Status: data only, 1 dataset cited

Wednesday, 8 July 2026 (1 paper)

[68] Code ↔ Paper doi:10.1007/s00401-026-03039-w [paper, repository]

Correlative ultrastructural mapping of Lewy pathology reveals regional diversity in Parkinson's and dementia with Lewy bodies.

Journal: Acta neuropathologica

Authors' code: LBEM-CH/mitoanalyzer (GPL-3.0)

Status: code verified, 5 files readable

Saturday, 4 July 2026 (1 paper)

[69] doi:10.3390/biology15131074 [paper]

The Distinct Electrophysiological Mechanisms in the Cortico-Striatal Circuit of LID Rats.

Journal: Biology

Status: code on request

Thursday, 2 July 2026 (5 papers)

[70] Code ↔ Paper doi:10.1038/s44319-026-00856-8 [paper, repository]

Lipid droplets promote aberrant liquid-liquid phase separation of alpha-synuclein impairing energy homeostasis.

Journal: EMBO reports

Authors' code: eleannakara/kara-lab (MIT), sunghoojung/segment-classify-pipeline (no license)

Status: code verified, 14 files readable, 10 matches

[71] doi:10.3389/fgene.2026.1865257 [paper, data]

Disease-predominant loci across Alzheimer's disease, Parkinson's disease and Lewy body dementia: evidence from the UK Biobank prospective cohort, conditional GWAS and colocalization.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[72] doi:10.3389/fnins.2026.1862571 [paper, data]

Integrated bulk, single-cell, and spatial transcriptomic analyses prioritize NOTCH1 as a candidate gene associated with neurovascular and immune-related alterations in Parkinson's disease.

Journal: Frontiers in neuroscience

Status: code on request, 1 dataset cited

[73] Code ↔ Paper doi:10.1016/j.prdoa.2026.100480 [paper, repository]

Multitype hand writing as a digital marker for Parkinson's disease.

Journal: Clinical parkinsonism & related disorders

Authors' code: mishmoth/Multitype-hand-writing-as-a-digital-marker-for-Parkinson-s-disease- (no license)

Status: empty repository

[74] Code ↔ Paper doi:10.3390/bioengineering13070773 [paper, repository]

From API to Action: A Multi-Model Comparison of OpenAI, Anthropic, Google, and Meta LLMs for Clinical Trial Data Extraction.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: ricyoung/ClinicalTrialLLM-Extractor (MIT)

Status: code verified, 12 files readable, 14 matches

Wednesday, 1 July 2026 (7 papers)

[75] doi:10.1093/brain/awaf432 [paper, data]

Global network and local vulnerabilities underlie brain atrophy across Parkinson's disease stages.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[76] doi:10.1186/s40708-026-00317-x [paper, data]

Parkinson's disease classification using optimized attention-based deep learning from EEG signals with interpretable sub-band topography.

Journal: Brain informatics

Status: code on request, 2 datasets cited

[77] Code ↔ Paper doi:10.1126/sciadv.adu9309 [paper, repository]

Variations of global brain asymmetry are associated with aging and related diseases.

Journal: Science advances

Authors' code: ThomasYeoLab/CBIG (MIT), Zenodo 15561190 (CC-BY-4.0)

Status: code verified, 2,000 files readable

[78] Code ↔ Paper doi:10.1038/s41531-026-01422-8 [paper, repository]

Lewy pathology largely absent in prefrontal cortices of Parkinson's disease patients undergoing deep brain stimulation.

Journal: NPJ Parkinson's disease

Authors' code: github.mountsinai.org/beckmann-lab/lbp_neuropath (no license)

Status: code found, not verified yet

[79] doi:10.1186/s12883-026-05109-8 [paper, data]

A preliminary analysis of the inflammatory protein landscape in the CSF of mid- to late-stage Parkinson's disease: associations with motor severity and subtypes.

Journal: BMC neurology

Status: data only, 1 dataset cited

[80] Code ↔ Paper doi:10.1002/alz.71649 [paper, repository]

Postmortem brain MRI reveals differential associations of subcortical and limbic volumes with cortical thinning and neurodegenerative pathologies.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Pulkit-Khandelwal/purple-mri (no license), Pulkit-Khandelwal/postmortem-subcortical-limbic-pathologies (no license)

Status: code verified, 74 files readable, 11 matches

[81] doi:10.1002/brb3.71563 [paper, data]

A Hybrid Random Forest-SARSA Framework for Resting-State EEG-Based Parkinson's Disease Detection With Temporal Decision Refinement.

Journal: Brain and behavior

Status: data only, 1 dataset cited

Tuesday, 30 June 2026 (1 paper)

[82] Code ↔ Paper doi:10.1371/journal.ppat.1014315 [paper, repository]

A single Citrobacter rodentium infection in Pink1 knockout and wild-type mice leads to regional blood-brain-barrier perturbation and limited microglial activation without dopamine neuron axon terminal loss.

Journal: PLoS pathogens

Authors' code: liu-yikang/sherm-rodentskullstrip (GPL-3.0), louis-erictrudeau/trudeau-lab (MIT)

Status: code verified, 21 files readable, 5 matches

Monday, 29 June 2026 (1 paper)

[83] Code ↔ Paper doi:10.1371/journal.pgen.1012170 [paper, repository]

Genome wide association study meta-analysis of neuropathologic lesions of Alzheimer's disease and related dementias in a multi-site autopsy cohort.

Journal: PLoS genetics

Authors' code: beecham-lab/ADRD-Neuropathology-Scripts (MIT)

Status: code verified, 61 files readable, 4 matches

Saturday, 27 June 2026 (1 paper)

[84] doi:10.1186/s12974-026-03910-3 [paper, data]

Hereditary spastic paraplegia (HSP) gene 11 (Spg11) attenuates lipid accumulation in myeloid cells and neuroinflammation in the midbrain without affecting α-synuclein pathology.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

Friday, 26 June 2026 (2 papers)

[85] Code ↔ Paper doi:10.1186/s13040-026-00574-w [paper, repository]

Interpretable machine learning for Parkinson's disease diagnosis, staging, and biological mechanism exploration: a multicenter analysis.

Journal: BioData mining

Authors' code: jy2137/PD-radiomics (no license)

Status: dead link

[86] doi:10.7717/peerj-cs.3860 [paper, data]

Systematic review of unveiling the potential of AI using machine learning and deep learning methods in neurodegenerative diseases.

Journal: PeerJ. Computer science

Status: data only, 1 dataset cited

Thursday, 25 June 2026 (2 papers)

[87] Code ↔ Paper doi:10.1371/journal.pone.0348957 [paper, repository]

Steps against the burden of Parkinson's disease (StepuP): Protocol of a randomized controlled trial elucidating the biomechanical and neurophysiological mechanisms of a speed dependent treadmill training intervention.

Journal: PloS one

Authors' code: juliuswelzel/stepup_setup (no license)

Status: code verified, 45 files readable, 2 matches

[88] Code ↔ Paper doi:10.1093/braincomms/fcag245 [paper, repository]

Reduced pre-movement subthalamic beta desynchronization marks motor deficit in Parkinson's disease.

Journal: Brain communications

Authors' code: slowriver322/pMI_BetaDesync_BrainCom (MIT)

Status: code verified, 11 files readable, 6 matches

Wednesday, 24 June 2026 (1 paper)

[89] doi:10.1007/s00401-026-03042-1 [paper]

Tau368 improves p-tau diagnostic accuracy for FTLD-tau from FTLD-TDP.

Journal: Acta neuropathologica

Status: code on request

Monday, 22 June 2026 (1 paper)

[90] Code ↔ Paper doi:10.1016/j.xgen.2026.101284 [paper, repository]

NERINE reveals rare variant associations in gene networks across phenotypes and implicates an SNCA-PRL-LRRK2 subnetwork in Parkinson's disease.

Journal: Cell genomics

Authors' code: snz20/NERINE (CC-BY-NC-ND-4.0), Zenodo 19209293 (CC-BY-4.0), snz20/RVTT (MIT), Zenodo 10627549 (CC-BY-4.0)

Status: code verified, 26 files readable, 11 matches

Friday, 19 June 2026 (1 paper)

[91] Code ↔ Paper doi:10.1038/s41531-026-01439-z [paper, repository]

DBSsync: combining intracranial and multimodal data to investigate new biomarkers in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: juliettevivien/DBSsync (MIT), neuromodulation/perceive (Apache-2.0)

Status: code verified, 112 files readable, 15 matches

Wednesday, 17 June 2026 (2 papers)

[92] doi:10.1038/s41380-026-03667-4 [paper, data]

Engineering functional ventral midbrain dopaminergic neurons in human organoids through WNT modulation and bioreactor culture.

Journal: Molecular psychiatry

Status: data only, 2 datasets cited

[93] doi:10.1186/s40035-026-00559-z [paper, data]

Targeting lysosomal pH restores mitochondrial quality control in GBA1-mutant Parkinson's disease.

Journal: Translational neurodegeneration

Status: data only, 2 datasets cited

Tuesday, 16 June 2026 (1 paper)

[94] doi:10.1016/j.isci.2026.116399 [paper]

Connexin 50 mediates disease-relevant alpha-synuclein oligomer propagation and neuroinflammation in neurodegenerative disease.

Journal: iScience

Status: code on request

Monday, 15 June 2026 (2 papers)

[95] Code ↔ Paper doi:10.1038/s41591-026-04432-4 [paper, repository]

Activity-dependent adaptive deep brain stimulation improves gait in Parkinson's disease.

Journal: Nature medicine

Authors' code: dbdq/neurodecode (gnu), Zenodo 19371521 (CC-BY-4.0)

Status: code verified, 78 files readable, 3 matches

[96] Code ↔ Paper doi:10.1038/s41591-026-04434-2 [paper, repository]

Adaptive deep brain stimulation for dynamic gait control in Parkinson's disease: a randomized feasibility trial.

Journal: Nature medicine

Authors' code: openmind-consortium/Analysis-rcs-data (no license), Weill-Neurohub-OPTiMaL/rcs-simulation (MIT), UCSF-wang-lab/gp-FaDBS (no license), openmind-consortium.github.io (no license)

Status: code verified, 191 files readable, 18 matches

Saturday, 13 June 2026 (1 paper)

[97] Code ↔ Paper doi:10.1186/s40478-026-02346-3 [paper, repository]

α-Synuclein overexpression increases the tropism of pre-formed fibrils and MSA-patient derived seeds towards oligodendroglia.

Journal: Acta neuropathologica communications

Authors' code: DBI-INFRA/pSynDetectQuPath (no license)

Status: empty repository, 1 file readable

Thursday, 11 June 2026 (2 papers)

[98] doi:10.1159/000553009 [paper, data]

State-of-the-Art Imaging and Localization Assessment in Post-Operative Deep Brain Stimulation for Parkinson's Disease: A Review.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[99] doi:10.1016/j.apsb.2026.06.016 [paper, data]

Rhynchophylline rewires DLAT lipoylation <i>via</i> conformational control to reverse mitochondrial bioenergetic collapse against dopaminergic neuronal injury.

Journal: Acta pharmaceutica Sinica. B

Status: data only, 2 datasets cited

Wednesday, 10 June 2026 (3 papers)

[100] Code ↔ Paper doi:10.1038/s41531-026-01428-2 [paper, repository]

The degenerome-a novel streamline-wise approach for white matter integrity in neurodegeneration.

Journal: NPJ Parkinson's disease

Authors' code: reisert/globaltracking (no license), reisert/degenerome (no license)

Status: code verified, 102 files readable

[101] Code ↔ Paper doi:10.1038/s44220-026-00669-7 [paper, repository]

Deviations in effective connectivity explain different hallucination subtypes in Parkinson's disease psychosis.

Journal: Nature. Mental health

Authors' code: VMiri/visual-MMN-DCM- (no license), OSF umd89 (no license)

Status: code verified, 8 files readable, 6 matches

[102] Code ↔ Paper doi:10.7759/cureus.110620 [paper, repository]

Top-Cited Articles on Dysphagia and Cognitive Impairment: A Scopus-Based Bibliometric Analysis of Publications Retrieved Through October 2025.

Journal: Cureus

Authors' code: taynaud/python-louvain (BSD-3-Clause)

Status: code verified, 8 files readable

Tuesday, 9 June 2026 (1 paper)

[103] doi:10.1016/j.ebiom.2026.106325 [paper, data]

The complement C3-microglial axis in depression of Parkinson's disease: from mechanism to therapeutic intervention.

Journal: EBioMedicine

Status: data only, 1 dataset cited

Monday, 8 June 2026 (3 papers)

[104] doi:10.1038/s41531-026-01420-w [paper, data]

Locus coeruleus α-synuclein overexpression induces prodromal Parkinsonian features in mice.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[105] Code ↔ Paper doi:10.1038/s41531-026-01412-w [paper, repository]

Network based statistics associates increased connectivity to REM sleep disorder and hallucinations in early DLB.

Journal: NPJ Parkinson's disease

Authors' code: elisabettavallarino/transfreq (BSD-3-Clause)

Status: code verified, 17 files readable, 1 match

[106] doi:10.1016/j.ibneur.2026.06.002 [paper, data]

Altered static and dynamic functional network connectivity in Parkinson's disease: A multisite functional magnetic resonance imaging study.

Journal: IBRO neuroscience reports

Status: data only, 1 dataset cited

Saturday, 6 June 2026 (1 paper)

[107] Code ↔ Paper doi:10.1038/s41531-026-01421-9 [paper, repository]

Cortico-pallidal beta dynamics underlie impaired turning in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: openmind-consortium/Analysis-rcs-data (no license)

Status: code verified, 157 files readable

Friday, 5 June 2026 (1 paper)

[108] doi:10.1038/s41746-026-02828-7 [paper]

Age, emotional burden and deep brain stimulation electrode location shape Parkinson's disease quality of life.

Journal: NPJ digital medicine

Status: code on request

Thursday, 4 June 2026 (1 paper)

[109] doi:10.1016/j.prdoa.2026.100458 [paper, data]

Timing of device-aided therapy initiation in Parkinson's disease: reference estimates for healthcare planning and biological heterogeneity.

Journal: Clinical parkinsonism & related disorders

Status: data only, 1 dataset cited

Wednesday, 3 June 2026 (4 papers)

[110] Code ↔ Paper doi:10.1038/s41531-026-01417-5 [paper, repository]

Correlation of thalamic functional organization disturbances and genetic architecture in motor subtypes of Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: OSF gwzhe (no license)

Status: code verified, 1 file readable

[111] doi:10.1126/sciadv.aea3316 [paper, data]

Charting the human-specific properties of gene expression networks in the infant prefrontal cortex.

Journal: Science advances

Status: data only, 1 dataset cited

[112] doi:10.1038/s41531-026-01391-y [paper, data]

Improving Parkinson's disease diagnosis by non-invasive detection of retinal biomarkers in MPTP monkeys using ERG and pupillometry.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[113] Code ↔ Paper doi:10.3389/fendo.2026.1828487 [paper, repository]

Castration-induced nigrostriatal deficits are linked to reduced TrkB and loss of mature spines in the dorsal striatum.

Journal: Frontiers in endocrinology

Authors' code: YttriLab/B-SOID (GPL-3.0)

Status: code verified, 124 files readable, 4 matches

Monday, 1 June 2026 (2 papers)

[114] Code ↔ Paper doi:10.1002/nbm.70301 [paper, repository]

Reducing Variability in Deep Gray Matter QSM Using Differential ROI Referencing: A Phantom and In Vivo Evaluation.

Journal: NMR in biomedicine

Authors' code: HUFS-AIIMST/Differential-ROI-referencing-QSM (no license)

Status: empty repository, 1 file readable

[115] doi:10.1186/s12929-026-01257-8 [paper, data]

Distinct and combined interferon-ɑ/β-receptor-1 loss in neurons and astrocytes disrupt brain energy metabolism and drive Parkinsonian dementia.

Journal: Journal of biomedical science

Status: data only, 2 datasets cited

Friday, 29 May 2026 (1 paper)

[116] Code ↔ Paper doi:10.1371/journal.pcbi.1014323 [paper, repository]

A prototype-augmented graph representation learning framework for identifying brain disorder-associated genes and facilitating drug repurposing.

Journal: PLoS computational biology

Authors' code: biomed-AI/MOGT (no license)

Status: code verified, 7 files readable, 4 matches

Thursday, 28 May 2026 (2 papers)

[117] Code ↔ Paper doi:10.1016/j.stemcr.2026.102930 [paper, repository]

ZFHX4 is necessary for dopaminergic neuron differentiation and controls cell cycle by regulating LIN28A.

Journal: Stem cell reports

Authors' code: sysbiolux/Valceschini_et_al_2025 (no license), uniluxembourg/fstm/dlsm/bioinfo/snakemake-rna_seqv0.2.3 (no license), macs3-project/MACS (BSD-3-Clause), hub.docker.com/layers/ginolhac (no license), sysbiolux/pd-rsnp_scarb2 (no license)

Status: code verified, 130 files readable, 5 matches

[118] doi:10.3389/fnagi.2026.1766698 [paper, data]

Intracerebroventricular infusion of exercise donor plasma exosomes induces molecular changes indicating exercise-like adaptations in basal ganglia cells of older male rats.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

Wednesday, 27 May 2026 (4 papers)

[119] Code ↔ Paper doi:10.1038/s41531-026-01414-8 [paper, repository]

Targeting based on patient-specific 7 Tesla MRI connectivity analysis improves deep brain stimulation for Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: dgobbi/vtk-dicom (BSD-3-Clause)

Status: code verified, 61 files readable, 5 matches

[120] Code ↔ Paper doi:10.1038/s41531-026-01408-6 [paper, repository]

A stacked multi-classifier for multi-modal data fusion in transcranial sonography-based Parkinson's disease assessment.

Journal: NPJ Parkinson's disease

Authors' code: HongyuKang0306/Fusion_Features_Assessment (no license)

Status: empty repository, 1 file readable

[121] Code ↔ Paper doi:10.1038/s41531-026-01384-x [paper, repository]

In-vivo iron mapping in patients with Parkinson's disease using deep learning-based susceptibility source separation MRI.

Journal: NPJ Parkinson's disease

Authors' code: SNU-LIST/chi-separation (no license)

Status: empty repository, 1 file readable

[122] doi:10.3390/biomimetics11060369 [paper, data]

Bio-Inspired Deep Learning for Parkinson's Disease Detection: A Comparative Study Based on Vocal Biomarkers and Archimedean Spiral Analysis.

Journal: Biomimetics (Basel, Switzerland)

Status: data only, 2 datasets cited

Tuesday, 26 May 2026 (3 papers)

[123] doi:10.1155/padi/8731032 [paper]

Identification of Gene Signatures and Molecular Mechanisms for Diagnosing Parkinson's Disease and Nonalcoholic Fatty Liver Disease Using Machine Learning.

Journal: Parkinson's disease

Status: data only

[124] Code ↔ Paper doi:10.1162/imag.a.1241 [paper, repository]

Multispectral 7 Tesla MRI as a potential predictor of dopamine transporter deficiency in Parkinson's disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: mert-o/dat_prediction (MIT)

Status: code verified, 15 files readable, 9 matches

[125] doi:10.3390/brainsci16060561 [paper]

Electrocorticography During Deep Brain Stimulation Surgery for Movement Disorders: Single-Center Experience.

Journal: Brain sciences

Status: code on request

Monday, 25 May 2026 (3 papers)

[126] doi:10.1038/s41531-026-01406-8 [paper]

Machine learning-based optimization of dual subthalamic nucleus and substantia nigra targeting in deep brain stimulation.

Journal: NPJ Parkinson's disease

Status: code on request

[127] Code ↔ Paper doi:10.1038/s41598-026-53876-8 [paper, repository]

A multi-domain graph-integrated neural framework for robust acoustic anomaly detection under adverse environmental conditions.

Journal: Scientific reports

Authors' code: sumit945/Anomaly-Detection (MIT)

Status: code verified, 23 files readable, 30 matches

[128] Code ↔ Paper doi:10.1002/mds.70355 [paper, repository]

Gray Matter Microstructure Measured Using Diffusion Imaging as a Biomarker of Severity in Lewy Body Diseases.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: AngelikaZa/GM_Microstructure (CC0-1.0)

Status: code verified, 12 files readable, 2 matches

Friday, 22 May 2026 (1 paper)

[129] doi:10.1186/s40478-026-02324-9 [paper, data]

Characterization of a distinct form of vimentin in the neurodegenerative brain.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

Tuesday, 19 May 2026 (2 papers)

[130] doi:10.1038/s41598-026-52880-2 [paper]

Cognitive effects of STN-DBS on mental rotation performance in Parkinson's disease.

Journal: Scientific reports

Status: code on request

[131] Code ↔ Paper doi:10.3389/fnagi.2026.1806505 [paper, repository]

ALDH1A1-dopaminergic gene co-expression in human substantia nigra: meta-analysis of disease-associated correlation changes across seven independent Parkinson's disease datasets.

Journal: Frontiers in aging neuroscience

Authors' code: nwharbert8-ui/ALDH1A1-PD-meta-analysis-Repo (MIT)

Status: code verified, 8 files readable, 12 matches

Monday, 18 May 2026 (1 paper)

[132] doi:10.1038/s44172-026-00688-3 [paper]

N2G calibrator: a cross-subject adversarial learning framework for neural signal-driven gait tracking in Parkinson's disease.

Journal: Communications engineering

Status: code on request

Friday, 15 May 2026 (1 paper)

[133] doi:10.1172/jci190954 [paper]

Modulation of WNT and FGF18 enhances yield and subtype identity of hPSC-derived midbrain dopamine neurons.

Journal: The Journal of clinical investigation

Status: data only

Wednesday, 13 May 2026 (1 paper)

[134] doi:10.3389/fnagi.2026.1823372 [paper, data]

Stereoselective effects of nicotine enantiomers on the gut-brain axis and neuroinflammation in a mouse model of Parkinson's disease.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

Tuesday, 12 May 2026 (3 papers)

[135] Code ↔ Paper doi:10.1016/j.ebiom.2026.106293 [paper, repository]

Dynamic neural states underpin motor symptom severity in Parkinson's disease: a longitudinal analysis of chronic cortico-subthalamic nucleus recordings.

Journal: EBioMedicine

Authors' code: saltwater-tensor/PD-neural-dynamics-motor-states (AGPL-3.0)

Status: code verified, 14 files readable, 9 matches

[136] doi:10.1038/s41531-026-01382-z [paper, data]

Preformed fibrils of α-synuclein rapidly activate LRRK2 on early endosomes, driving Rab5 phosphorylation and disrupting endolysosomal and synaptic function.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[137] doi:10.1038/s42003-026-10134-x [paper, data]

Early α-synuclein-mediated mitochondrial dysfunction in a human cell model of Parkinson's disease dementia.

Journal: Communications biology

Status: data only, 1 dataset cited

Sunday, 10 May 2026 (1 paper)

[138] doi:10.3390/ijms27104242 [paper, data]

Salidroside Protects Against Simazine-Induced Neurotoxicity by Activating <i>PINK1/Parkin</i> Mitophagy.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 8 May 2026 (1 paper)

[139] Code ↔ Paper doi:10.1038/s41531-026-01380-1 [paper, repository]

Identifying maximal beta power from directional subthalamic local field potentials in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: JKBehnke/monopolar_directional_beta (MIT)

Status: code verified, 3 files readable, 1 match

Thursday, 7 May 2026 (2 papers)

[140] Code ↔ Paper doi:10.1002/ana.78252 [paper, repository]

Diffusion MRI and α-Synuclein Seed Amplification Status in Parkinson's Disease.

Journal: Annals of neurology

Authors' code: stnava.github.io (no license)

Status: code verified

[141] Code ↔ Paper doi:10.1016/j.stemcr.2026.102920 [paper, repository]

Mitochondrial toxins cause widespread downregulation of pathways in X-linked dystonia-parkinsonism patient-derived neurons.

Journal: Stem cell reports

Authors' code: COMBINE-lab/Salmon (BSD-3-Clause), pachterlab/sleuth (GPL-3.0), datapplab/gage (no license)

Status: code verified, 154 files readable

Wednesday, 6 May 2026 (7 papers)

[142] Code ↔ Paper doi:10.1002/mds.70348 [paper, repository]

Electroencephalography-Based Clustering Reveals Robust Neurophysiological Subtypes in Parkinson's Disease.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: ronmon1994/eeg-preprocessing-toolkit (no license), danielvered/eeg-based-pd-subtyping (MIT)

Status: code verified, 20 files readable, 14 matches

[143] doi:10.1073/pnas.2537314123 [paper, data]

Incentive valence differentially engages open- and closed-loop basal ganglia circuits during movement initiation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[144] doi:10.1038/s41531-026-01362-3 [paper, data]

The epitranscriptomic m6A RNA modification modulates the synapse in ageing and in a mouse model of synucleinopathy.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[145] doi:10.1038/s41531-026-01345-4 [paper]

Individual cases of Parkinson's disease can be robustly classified using magnetoencephalography.

Journal: NPJ Parkinson's disease

Status: code on request

[146] Code ↔ Paper doi:10.1038/s43856-026-01606-6 [paper, repository]

Validation of remote multimodal AI screening for Parkinson disease across diverse settings.

Journal: Communications medicine

Authors' code: ROC-HCI/UFNet (MIT), Zenodo 18940836 (MIT), saiful1105020/park_communications_medicine (MIT), Zenodo 18940702 (MIT)

Status: code verified, 131 files readable, 18 matches

[147] doi:10.1186/s13062-026-00778-4 [paper, data]

Multi-omics analysis of deep brain stimulation associated with brain-gut axis modulation and symptom amelioration in a Parkinson's disease mouse model.

Journal: Biology direct

Status: data only, 1 dataset cited

[148] Code ↔ Paper doi:10.1038/s44387-026-00109-y [paper, repository]

SPARROW: subtyping Parkinson's disease with agentic reasoning and robust omics workflow.

Journal: NPJ artificial intelligence

Authors' code: DiegoMac17/sparrow-pd (no license)

Status: code verified, 17 files readable, 15 matches

Tuesday, 5 May 2026 (3 papers)

[149] Code ↔ Paper doi:10.1038/s41531-026-01360-5 [paper, repository]

Hippocampal atrophy in untreated de novo Parkinson's disease with obstructive sleep apnea.

Journal: NPJ Parkinson's disease

Authors' code: josefmana/pdosa (other)

Status: code verified, 28 files readable, 12 matches

[150] Code ↔ Paper doi:10.1038/s41598-026-50523-0 [paper, repository]

Mechanistic multiscale modeling identifies putative natural tri-target candidates of MAO-B, LRRK2 and A₂A for Parkinson's disease.

Journal: Scientific reports

Authors' code: khibech/Parkinson-s-Disease (no license)

Status: code verified, 3 files readable

[151] doi:10.1021/acsomega.5c10445 [paper, data]

Integration of Network Pharmacology, Molecular Docking, and Molecular Dynamics to Decipher the Multi-Target Mechanisms of Crocin I in Parkinson's Disease with In Vivo Validation.

Journal: ACS omega

Status: data only, 1 dataset cited

Saturday, 2 May 2026 (1 paper)

[152] Code ↔ Paper doi:10.1038/s41531-026-01372-1 [paper, repository]

Varying patterns of association between cortical large-scale networks and subthalamic nucleus activity in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: Kohliver/Subcortical-Cortical-Networks-in-PD (no license), Kohliver/Subcortical-Cortical-Networks-in-PD- (MIT), Zenodo 10401793 (CC-BY-4.0), Zenodo 6875060 (BSD-3-Clause)

Status: code verified, 110 files readable, 6 matches

Friday, 1 May 2026 (3 papers)

[153] doi:10.1002/brb3.71410 [paper]

Structural Volumetric Alterations in Parkinson's Disease With Mild Cognitive Impairment.

Journal: Brain and behavior

Status: code on request

[154] doi:10.1002/mds.70334 [paper]

A Brainstem Radiomics Framework to Distinguish Progressive Supranuclear Palsy from Parkinson's Disease.

Journal: Movement disorders : official journal of the Movement Disorder Society

Status: code on request

[155] doi:10.1002/cns.70912 [paper, data]

Novel Insights Into the Association Between Parkinson's Disease and Constipation: Role of SHMT2 as a Promising Biomarker.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

Wednesday, 29 April 2026 (2 papers)

[156] doi:10.1038/s41598-026-48605-0 [paper, data]

Modified graph neural network-oriented optimization model for the classification of PD.

Journal: Scientific reports

Status: data only, 1 dataset cited

[157] Code ↔ Paper doi:10.1038/s44400-026-00075-x [paper, repository]

Common pathogenic mechanisms in the hippocampus across neurodegenerative dementias: Alzheimer's disease, Down syndrome, and Parkinson's disease.

Journal: NPJ dementia

Authors' code: renealbertjohan/NPJ_dementia (no license)

Status: code verified, 11 files readable, 16 matches

Tuesday, 28 April 2026 (2 papers)

[158] doi:10.1038/s41531-026-01368-x [paper]

The pattern of fMRI activation with STN DBS reveals symptom-specific networks.

Journal: NPJ Parkinson's disease

Status: code on request

[159] Code ↔ Paper doi:10.3390/ijms27093934 [paper, repository]

Serum Neurofilament Light Chain and GFAP Levels Are Associated with Structural Brain Connectivity in Parkinson's Disease.

Journal: International journal of molecular sciences

Authors' code: surfer.nmr.mgh.harvard.edu (no license), tractoflow-documentation.readthedocs.io (no license)

Status: code verified

Monday, 27 April 2026 (2 papers)

[160] Code ↔ Paper doi:10.1016/j.nbd.2026.107403 [paper, repository]

Selective vulnerability of monoaminergic neurons and network spread of alpha-synuclein jointly explain pathology progression in Parkinson's disease models.

Journal: Neurobiology of disease

Authors' code: Raj-Lab-UCSF/Brainframe (MIT), Raj-Lab-UCSF/NexIS (MIT)

Status: code verified, 72 files readable

[161] doi:10.1016/j.jbc.2026.113076 [paper, data]

Structure-guided discovery of non-catechol dopamine D1 receptor ligands with biased agonism and antagonism.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

Saturday, 25 April 2026 (1 paper)

[162] doi:10.3390/s26092671 [paper, data]

Self-Explaining Neural Networks for Transparent Parkinson's Disease Screening.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 24 April 2026 (3 papers)

[163] doi:10.1073/pnas.2531597123 [paper, data]

Lactoperoxidase is a candidate for mediating neuromelanin formation in the human substantia nigra.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[164] Code ↔ Paper doi:10.26508/lsa.202503551 [paper, repository]

Convergent transcriptomic signature in iPSC-dopaminergic neurons of hereditary Parkinson's disease.

Journal: Life science alliance

Authors' code: cbio-lab/PARK2023 (MIT)

Status: empty repository, 2 files readable

[165] Code ↔ Paper doi:10.1038/s41531-026-01353-4 [paper, repository]

Disruption of the LRRK2 substrate RAB12 facilitates neurotransmission and causes hyperactivity in mice.

Journal: NPJ Parkinson's disease

Authors' code: JUMPSuite/JUMP (no license)

Status: code verified, 120 files readable, 2 matches

Thursday, 23 April 2026 (3 papers)

[166] Code ↔ Paper doi:10.1038/s41467-026-72161-w [paper, repository]

Temporal heterogeneity shapes diffusion dynamics in complex networks.

Journal: Nature communications

Authors' code: ejcorn/connectome_diffusion (MIT), naivefrog0817-chengluo/temporal_diffusion (no license)

Status: code verified, 53 files readable, 1 match

[167] Code ↔ Paper doi:10.1038/s41593-026-02260-w [paper, repository]

Early dopamine disruption in the entorhinal cortex of a knock-in model of Alzheimer's disease.

Journal: Nature neuroscience

Authors' code: igarashilab.org/resource (no license)

Status: code verified

[168] doi:10.1016/j.crmeth.2026.101418 [paper]

Single-molecule detection methods to study alpha-synuclein aggregation in postmortem Parkinson's disease brains.

Journal: Cell reports methods

Status: code on request

Wednesday, 22 April 2026 (1 paper)

[169] Code ↔ Paper doi:10.1093/braincomms/fcag136 [paper, repository]

Lower synaptic density in mood circuitry underlies depression in Parkinson's disease.

Journal: Brain communications

Authors' code: cayirsalih/Parkinsons-analysis (no license)

Status: code verified, 1 file readable, 1 match

Tuesday, 21 April 2026 (1 paper)

[170] Code ↔ Paper doi:10.1038/s41467-026-71502-z [paper, repository]

Neurons of the human subthalamic nucleus engage with local delta frequency processes during action cancellation.

Journal: Nature communications

Authors' code: adredish/MClust-Spike-Sorting-Toolbox (GPL-3.0), hangyabalazs/CellBase (no license), hangyabalazs/human-STN-delta (CC0-1.0), Zenodo 18679923 (CC0-1.0), kiralyb/human-STN-delta (CC0-1.0)

Status: code verified, 896 files readable, 39 matches

Monday, 20 April 2026 (2 papers)

[171] Code ↔ Paper doi:10.1038/s41531-026-01335-6 [paper, repository]

StimVision: smartphone video kinematics to optimize DBS programming in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: Flolan2/StimVision_data (no license)

Status: code verified, 5 files readable, 2 matches

[172] Code ↔ Paper doi:10.1038/s41531-026-01354-3 [paper, repository]

Neuromodulation-induced normalization of cortical metastable dynamics signatures in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: PSYMARKER/leida-python (MIT), chenfei-ye/WEIDA-DBS (no license)

Status: code verified, 39 files readable, 18 matches

Sunday, 19 April 2026 (1 paper)

[173] Code ↔ Paper doi:10.1038/s41598-026-47769-z [paper, repository]

A multimodal explainable artificial intelligence framework for interpretable Parkinson's disease prediction.

Journal: Scientific reports

Authors' code: Zenodo 18297490 (CC-BY-4.0)

Status: code verified

Friday, 17 April 2026 (1 paper)

[174] Code ↔ Paper doi:10.1002/ana.78206 [paper, repository]

Multimodal Image Guidance in Subthalamic Deep Brain Stimulation for Parkinson's Disease.

Journal: Annals of neurology

Authors' code: leaddbs/leaddbs (GPL-3.0)

Status: code verified, 2,000 files readable, 7 matches

Thursday, 16 April 2026 (1 paper)

[175] doi:10.1038/s41531-026-01355-2 [paper]

Regional gene expression and brain atrophy in dementia with Lewy bodies: an imaging transcriptomics study.

Journal: NPJ Parkinson's disease

Status: code on request

Wednesday, 15 April 2026 (2 papers)

[176] Code ↔ Paper doi:10.1038/s41467-026-71525-6 [paper, repository]

Single-nucleus brain transcriptomics reveals microglia dysfunction in multiple system atrophy.

Journal: Nature communications

Authors' code: rrydbirk/MSAvsPD (GPL-3.0), Zenodo 18610042 (GPL-3.0)

Status: code verified, 20 files readable, 26 matches

[177] Code ↔ Paper doi:10.1038/s41467-026-71351-w [paper, repository]

Variants in the proteasome regulator PSMF1 cause a phenotypic spectrum from parkinsonism to perinatal lethality.

Journal: Nature communications

Authors' code: icm-institute/corti-corvol/variants_tiers_gene (GPL-3.0)

Status: code verified, 9 files readable, 9 matches

Tuesday, 14 April 2026 (1 paper)

[178] Code ↔ Paper doi:10.1016/j.nbd.2026.107379 [paper, repository]

DYRK1A and Parkinson's disease, facts and hypotheses.

Journal: Neurobiology of disease

Authors' code: neurogenetics/GWAS_locus_browser (GPL-3.0)

Status: code verified, 65 files readable

Monday, 13 April 2026 (1 paper)

[179] doi:10.3389/frai.2026.1807209 [paper, data]

A quantum-classical dual-track deep learning network for explainable Parkinson's disease classification.

Journal: Frontiers in artificial intelligence

Status: data only, 1 dataset cited

Saturday, 11 April 2026 (1 paper)

[180] Code ↔ Paper doi:10.1038/s41531-026-01348-1 [paper, repository]

Pathology-Anchored Transcranial Sonography: A Cascaded Super-Resolution Deep Learning System for Early-Stage Parkinson's Disease Grading.

Journal: NPJ Parkinson's disease

Authors' code: DrZhaoys/Early-Stage-Parkinson-s-Disease-Grading (no license)

Status: code verified, 45 files readable, 3 matches

Thursday, 9 April 2026 (1 paper)

[181] doi:10.3389/frai.2026.1777236 [paper, data]

Design of a deep learning prediction model for Alzheimer's and Parkinson's Disease using MRI images.

Journal: Frontiers in artificial intelligence

Status: data only, 1 dataset cited

Wednesday, 8 April 2026 (2 papers)

[182] doi:10.1126/sciadv.ady2696 [paper, data]

Pulmonary neuroendocrine cell-derived exosomes regulate iron homeostasis and oxidative stress in lung neurons.

Journal: Science advances

Status: data only, 3 datasets cited

[183] doi:10.1038/s41531-026-01316-9 [paper]

Distinct finger-tapping feature in progressive supranuclear palsy correlates with motor function and brain atrophy.

Journal: NPJ Parkinson's disease

Status: code on request

Tuesday, 7 April 2026 (1 paper)

[184] Code ↔ Paper doi:10.1101/gr.281113.125 [paper, repository]

Single-nucleus multiomic profiling of the aging mouse substantia nigra reveals conserved gene alterations linked to Parkinson's disease.

Journal: Genome research

Authors' code: wkl1990/SN_aging (no license)

Status: code verified, 46 files readable, 12 matches

Monday, 6 April 2026 (1 paper)

[185] Code ↔ Paper doi:10.1038/s41597-026-07193-4 [paper, repository]

A single-nucleus RNA-seq dataset of the colon in Pink1-deficient and wild-type mice.

Journal: Scientific data

Authors' code: figshare 30702425 (CC-BY-4.0)

Status: code verified, 1 file readable, 7 matches

Friday, 3 April 2026 (3 papers)

[186] doi:10.1128/msphere.00908-25 [paper, data]

Integrated bioinformatics analysis of the shared molecular mechanisms between Parkinson's disease and COVID-19.

Journal: mSphere

Status: data only, 1 dataset cited

[187] doi:10.1038/s41419-025-08391-5 [paper, data]

TMBIM6 enhances dopaminergic neuron survival by modulating the IRE1a pathway in Parkinson's disease.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[188] Code ↔ Paper doi:10.1002/advs.75097 [paper, repository]

Remote Magnetomechanical Neuromodulation Uncovers Therapeutic Mechanisms for Alleviating Parkinsonian Symptoms in Freely Moving Mice.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: spikeinterface.readthedocs.io (no license), Zenodo 18886278 (CC-BY-4.0), Zenodo 18886279 (CC-BY-4.0)

Status: code verified

Thursday, 2 April 2026 (1 paper)

[189] doi:10.1007/s12031-026-02506-z [paper, data]

Striatal Dysregulation of Angpt2 and Circadian Gene Expression in a Rotenone Rat Model of Parkinson's Disease.

Journal: Journal of molecular neuroscience : MN

Status: data only, 1 dataset cited

Wednesday, 1 April 2026 (2 papers)

[190] Code ↔ Paper doi:10.1523/eneuro.0423-25.2026 [paper, repository]

Cortically Mediated Muscle Responses to Balance Perturbations Increase with Perturbation Magnitude in Older Adults with and without Parkinson's Disease.

Journal: eNeuro

Authors' code: Neuromechanics-Lab/HOA_PD_SRM (no license)

Status: code verified, 46 files readable, 5 matches

[191] Code ↔ Paper doi:10.1038/s41467-026-71317-y [paper, repository]

TNF alpha unmasks enteric malate aspartate shuttle dysfunction bridging Parkinson disease and intestinal inflammation.

Journal: Nature communications

Authors' code: data.mendeley.com/datasets/v8dknj466y (no license)

Status: code verified