OSCR

Mutation of key signaling regulators of cerebrovascular development in vein of Galen malformations.

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samtools/samtools

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broadinstitute/gatk

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python.org/downloads

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dreichlab/eig

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Kahle-Lab/VOGM

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Tools found in the code: BCFtools, Biopython, data.table, ggplot2, h5py, PyTorch Lightning, limma, Monocle 3, NumPy, pandas, patchwork, pheatmap, PyMC, pysam, PyTorch, reshape2, reticulate, SAMtools, scikit-learn, SciPy, Seurat, SingleCellExperiment, tidyverse

Overview

Authors: Shujuan Zhao, Kedous Y. Mekbib, Martijn A. van der Ent, Garrett Allington, Andrew Prendergast, Jocelyn E. Chau, Hannah Smith, John Shohfi, Jack Ocken, Daniel Duran, Charuta G. Furey, Le Thi Hao, Phan Q. Duy, Benjamin C. Reeves, Junhui Zhang, Carol Nelson-Williams, Di Chen, Boyang Li, Timothy Nottoli, Suxia Bai
and 46 other authorsMyron Rolle, Xue Zeng, Weilai Dong, Po-Ying Fu, Yung-Chun Wang, Shrikant Mane, Paulina Piwowarczyk, Katie Pricola Fehnel, Alfred Pokmeng See, Bermans J. Iskandar, Beverly Aagaard-Kienitz, Quentin J. Moyer, Evan Dennis, Emre Kiziltug, Adam J. Kundishora, Tyrone DeSpenza Jr., Ana B. W. Greenberg, Seblewengel M. Kidanemariam, Andrew T. Hale, James M. Johnston, Eric M. Jackson, Phillip B. Storm, Shih-Shan Lang, William E. Butler, Bob S. Carter, Paul Chapman, Christopher J. Stapleton, Aman B. Patel, Georges Rodesch, Stanislas Smajda, Alejandro Berenstein, Tanyeri Barak, E. Zeynep Erson-Omay, Hongyu Zhao, Andres Moreno-De-Luca, Mark R. Proctor, Edward R. Smith, Darren B. Orbach, Seth L. Alper, Stefania Nicoli, Titus J. Boggon, Richard P. Lifton, Murat Gunel, Philip D. King, Sheng Chih Jin, Kristopher T. Kahle
Journal: Nature communications
Published: 17 November 2023
Type: Research article
Status: code verified (how the code is found and verified)
DOI: 10.1038/s41467-023-43062-z
License: CC BY
Institutions: Harvard University (United States), Washington University in St. Louis (United States), Massachusetts General Hospital (United States), Yale University (United States), University of Michigan (United States), Michigan Medicine (United States), University of Mississippi Medical Center (United States), Barrow Neurological Institute (United States), University of Virginia (United States), Rockefeller University (United States), Boston Children's Hospital (United States), University of Wisconsin–Madison (United States), University of Ottawa (Canada), University of Alabama (United States), University of Alabama at Birmingham (United States), UAB Medicine (United States), Johns Hopkins University (United States), Johns Hopkins Medicine (United States), Hospital of the University of Pennsylvania (United States), Children's Hospital of Philadelphia (United States), Hôpital Foch (France), Hôpital Rothschild (France), Fondation de Rothschild (France), Icahn School of Medicine at Mount Sinai (United States), Autism & Developmental Medicine Institute (United States), Beth Israel Deaconess Medical Center (United States), Center for Vascular Biology Research (United States), Broad Institute (United States)
Categories: genetics / omics (modality), human (organism), mouse (organism), stroke (population), cellular / molecular (subfield)

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   :alt: OSCR

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