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Invasive neurophysiology and whole brain connectomics for neural decoding in patients with brain implants.

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Code

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neuromodulation/py_neuromodulation

License: MIT
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timonmerk/AcrossCohortMovementDecoding

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timonmerk/TRD_pynm

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timonmerk/rns_pynm_optimal_detection_params

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neuromodulation/AcrossPatientDecodingModel

License: MIT
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Zenodo 10794369

License: CC-BY-4.0
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Zenodo 8360751

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neuromodulation/pyparrm

License: MIT
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Tools found in the code: GIfTI library for MATLAB, imbalanced-learn, Matplotlib, MNE-Python, MNE-BIDS, MNE-Connectivity, NiBabel, Numba, NumPy, pandas, PyBIDS, scikit-image, scikit-learn, SciPy, seaborn, specparam (formerly FOOOF), SPM, statsmodels, XGBoost

Overview

Authors: Timon Merk, Richard M Köhler, Toni M Brotons, Samed Rouven Vossberg, Victoria Peterson, Laura Freire Lyra, Jojo Vanhoecke, Meera Chikermane, Thomas S Binns, Ningfei Li, Ashley Walton, Clemens Neudorfer, Alan Bush, Nathan Sisterson, Johannes Busch, Roxanne Lofredi, Jeroen Habets, Julius Huebl, Guanyu Zhu, Zixiao Yin
and 11 other authorsBaotian Zhao, Angela Merkl, Malek Bajbouj, Patricia Krause, Katharina Faust, Gerd-Helge Schneider, Andreas Horn, Jianguo Zhang, Andrea A Kühn, R Mark Richardson, Wolf-Julian Neumann
Journal: Nature biomedical engineering
Published: 24 September 2025
Type: Research article
Status: code verified (how the code is found and verified)
DOI: 10.1038/s41551-025-01467-9
License: CC BY-NC-ND
Institutions: Baylor College of Medicine (United States), Stiftung Charité (Germany), Rice University (United States), Charité – Universitätsmedizin Berlin (Germany), Harvard University (United States), Consejo Nacional de Investigaciones Científicas y Técnicas (Argentina), Universidad Nacional del Litoral (Argentina), Massachusetts General Hospital (United States), Einstein Center for Neurosciences Berlin (Germany), Capital Medical University (China), Beijing Tian Tan Hospital (China), MSB Medical School Berlin (Germany), Brigham and Women's Hospital (United States), University Hospital Cologne (Germany)
Categories: structural MRI / diffusion (modality), human (organism), Parkinson's (population), epilepsy (population), depression (population), clinical / translational (subfield)

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