OSCR

Multi-level analysis of the gut-brain axis shows autism spectrum disorder-associated molecular and microbial profiles.

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mortonjt/asd_multiomics_analyses

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Zenodo 7877350

License: other-open
State: the link answers

flatironinstitute/q2-matchmaker

License: BSD-3-Clause
State: the link answers
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mortonjt/q2-differential

License: BSD-3-Clause
State: the link answers
Copies: kept by the registry: this license allows it
Tools found in the code: ArviZ, Biopython, Matplotlib, NetworkX, Numba, NumPy, pandas, scikit-learn, SciPy, seaborn, SHAP, Stan, statsmodels, UMAP, xarray

Overview

Authors: James T Morton, Dong-Min Jin, Robert H Mills, Yan Shao, Gibraan Rahman, Daniel McDonald, Qiyun Zhu, Metin Balaban, Yueyu Jiang, Kalen Cantrell, Antonio Gonzalez, Julie Carmel, Linoy Mia Frankiensztajn, Sandra Martin-Brevet, Kirsten Berding, Brittany D Needham, María Fernanda Zurita, Maude David, Olga V Averina, Alexey S Kovtun
and 23 other authorsAntonio Noto, Michele Mussap, Mingbang Wang, Daniel N Frank, Ellen Li, Wenhao Zhou, Vassilios Fanos, Valery N Danilenko, Dennis P Wall, Paúl Cárdenas, Manuel E Baldeón, Sébastien Jacquemont, Omry Koren, Evan Elliott, Ramnik J Xavier, Sarkis K Mazmanian, Rob Knight, Jack A Gilbert, Sharon M Donovan, Trevor D Lawley, Bob Carpenter, Richard Bonneau, Gaspar Taroncher-Oldenburg
Journal: Nature neuroscience
Published: 26 June 2023
Type: Research article
Status: code verified (how the code is found and verified)
DOI: 10.1038/s41593-023-01361-0
License: CC BY
Institutions: National Institutes of Health (United States), Simons Foundation (United States), Eunice Kennedy Shriver National Institute of Child Health and Human Development (United States), Flatiron Institute (United States), New York University (United States), Wellcome Sanger Institute (United Kingdom), University of California San Diego (United States), Arizona State University (United States), Bar-Ilan University (Israel), Centre Hospitalier Universitaire Vaudois (Switzerland), University of Lausanne (Switzerland), University of Illinois Urbana-Champaign (United States), University of Illinois System (United States), Indiana University School of Medicine (United States), Universidad San Francisco de Quito (Ecuador), Oregon State University (United States), Vavilov Institute of General Genetics (Russia), Skolkovo Institute of Science and Technology (Russia), University of Cagliari (Italy), Shenzhen University (China), Fudan University (China), Children's Hospital of Fudan University (China), University of Colorado Anschutz (United States), Stony Brook University (United States), Stanford University (United States), Universidad Internacional del Ecuador (Ecuador), Centre Hospitalier Universitaire Sainte-Justine (Canada), CHU Sainte-Justine Research Center (Canada), Université de Montréal (Canada), Broad Institute (United States), Massachusetts General Hospital (United States), California Institute of Technology (United States), Scripps Institution of Oceanography (United States)
Categories: genetics / omics (modality), human (organism), autism (population), cellular / molecular (subfield)

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