The Brain, Body, and Behavior Dataset (BBBD): Multimodal Recordings during Educational Videos.
The 19 matches
- [1] § Methods › Signal acquisition › Recording and preprocessing of EEG ↔ data-reformatting/bids/raw/bbbd_123_raw_eeg.m, lines 192–238 · score 0.89 · notch filtered, low pass filtering, high pass filtered, ActiveTwo, EEG channels, raw EEG
- [2] § Methods › Signal acquisition › Recording and preprocessing of EEG ↔ data-reformatting/bids/raw/bbbd_45_raw_eeg.m, lines 227–274 · score 0.88 · notch filtered, low pass filtering, high pass filtered, ActiveTwo, EEG channels, raw EEG
- [3] § Background & Summary ↔ data-preprocessing/postprocessEyelinkData.m, lines 1–60 · score 0.78 · fixation rate, head position, gaze position, blink rate, saccade rate, horizontal
- [4] § Methods › Signal acquisition › Recording and preprocessing of ECG ↔ data-reformatting/bids/raw/bbbd_123_raw_eeg.m, lines 192–238 · score 0.73 · notch filtered, high pass filtered, ActiveTwo, cutoff, BioSemi, MATLAB
- [5] § Methods › Signal acquisition › Recording and preprocessing of ECG ↔ data-reformatting/bids/raw/bbbd_45_raw_eeg.m, lines 227–274 · score 0.71 · notch filtered, high pass filtered, ActiveTwo, cutoff, BioSemi, ECG
- [6] § Methods › Signal acquisition › Recording and preprocessing of gaze position, head position, and pupil size ↔ data-preprocessing/preprocessEyelinkData.m, lines 1–54 · score 0.69 · EyeLink, head movements, Gaze position, preprocessing, pupil
- [7] § Methods › Signal acquisition › Recording and preprocessing of gaze position, head position, and pupil size ↔ data-reformatting/bids/raw/bbbd_123_raw_eye_heart.m, lines 141–189 · score 0.62 · camera sensor pixels, millimeters, distance, Head, signals, eye
- [8] § Methods › Signal acquisition › Recording and preprocessing of gaze position, head position, and pupil size ↔ data-reformatting/bids/raw/bbbd_45_raw_eye_heart.m, lines 177–225 · score 0.62 · camera sensor pixels, millimeters, distance, Head, signals, eye
- [9] § Methods › Signal acquisition › Recording and preprocessing of gaze position, head position, and pupil size ↔ data-preprocessing/postprocessEyelinkData.m, lines 1–60 · score 0.61 · head movements, Gaze position, EyeLink, pupil, preprocessing
- [10] § Methods › Signal acquisition › Recording and preprocessing of respiration ↔ data-reformatting/bids/raw/bbbd_123_raw_eye_heart.m, lines 214–260 · score 0.60 · BioSemi, belt worn, Respiration signal, tension, chest
- [11] § Methods › Signal acquisition › Recording and preprocessing of respiration ↔ data-reformatting/bids/raw/bbbd_45_raw_eye_heart.m, lines 250–296 · score 0.60 · BioSemi, belt worn, Respiration signal, tension, chest
- [12] § Technical Validation › Gaze, saccades, blinks and fixations ↔ data-preprocessing/preprocessEyelinkData.m, lines 1–54 · score 0.59 · eye movement, gaze position, detection, saccade, blink
- [13] § Technical Validation › EEG ↔ figures-reproduction/figures-paper.ipynb, lines 32–158 · score 0.55 · power spectral density, occipital, frontal, EEG
- [14] § Methods › Procedure ↔ data-reformatting/bbbd_generate_bids_descriptors.m, lines 110–124 · score 0.54 · Institutional Review Boards, City University, approval, York
- [15] § Background & Summary ↔ data-reformatting/bids/derived/bbbd_45_derived_discrete.m, lines 1–132 · score 0.52 · breath peak, demographics, timestamps, fixations, saccades, blinks
- [16] § Technical Validation › EEG ↔ figures-reproduction/figures-paper.ipynb, lines 160–206 · score 0.52 · Power Spectral Density, SEM, log, band, alpha, EEG
- [17] § Methods › Signal acquisition › Recording and preprocessing of gaze position, head position, and pupil size ↔ data-preprocessing/preprocessEyelinkData.m, lines 105–146 · score 0.52 · finding outliers, IQR, median, artifacts, filter, Blinks
- [18] § Data Records › Data organization ↔ data-reformatting/bbbd_generate_bids_descriptors.m, lines 60–106 · score 0.50 · digit span scores, ASRS, phenotype, tsv, BIDS, reformatted
- [19] § Methods › Signal acquisition › Recording and preprocessing of EEG ↔ data-preprocessing/preprocessEEGdata.m, lines 199–276 · score 0.50 · neighboring electrodes, interquartile, Outliers, median, preprocessing
Paper
Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC
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The authors' code
MATLAB · 258 lines · 11 KB · no license · 3 matches
- function [data,metadata,idx_missing_data] = preprocessEyelinkData(data,timestamps,metadata,options)
- % [data,metadata,data_nan] = preprocessEyelinkData(data,timestamps,metadata,options)
- %
- % data (samples x modality) : eye link data matrix containing a column per measurement e.g. horizontal, vertical eye movements, pupil and head movements
- % timestamps (samples x 1) : column vector with timestamps for each sample
- %
- % metadata.blinks.timestamps_edf (#blinks x 2): contains a two column
- % vector with start and end sample numbers of each blink. This function takes that
- % as input and potentially adds more rows if it finds more blinks.
- %
- % options: this has grown conciderably, check calling function
- % mainPupilClean to see an overview.
- %
- % options.doVisualization = 1 % if you want to see something
- %
- % jmad/jenma 2022
- % jmad/jenma 2025 (updated)
- if ~isfield(options,'fs_eyeheadtracking')
- options.fs_eyeheadtracking = 1/(mean(diff(timestamps))/1000);
- fprintf('No sampking frequency specifief for data etting to %dHz\n',options.fs_eyeheadtracking)
- end
- fs = options.fs_eyeheadtracking;
- % eye tracking extension of blinks (we usually see the onset and offset of blinks detected by the eyelink 1000 to result unreliable detection of
- % gaze position and pupil size. We could maybe use saccade data to do this more reliably in the future
- buffer_eye_ms = options.buffer_eye_ms; % time on each side of a blink to nan out for eye tracking data (measured in ms)
- buffer_eye_samples = round((buffer_eye_ms/1000)*fs); % buffer in samples
- % pupil size extension of blink interpolation period
- buffer_pupil_ms = options.buffer_pupil_ms; % time on each side of a blink to nan out for pupil data (measured in ms)
- buffer_pupil_samples = round((buffer_pupil_ms/1000)*fs); % buffer in samples
- % for each EyeLink EDF files these indices might change. Please update according to your specific recording
- if size(data,2)>3
- idx_eyes = 1:2;
- idx_pupil = 3;
- idx_resolution = 4:5;
- idx_head = 6:8;
- end
- % this is to keep track of missing data in each of the modalities measured by the eyelink 1000
- idx_missing_data.all = false(size(timestamps));
- for iMissing = 1:size(metadata.missing_data.sampleidx_edf,1)
- idx_missing_data.all(metadata.missing_data.sampleidx_edf(iMissing,1):metadata.missing_data.sampleidx_edf(iMissing,2)) = true;
- end
- idx_missing_data.eye = idx_missing_data.all;
- idx_missing_data.pupil = idx_missing_data.all;
- mask_eye = idx_missing_data.all;
- mask_pupil = idx_missing_data.all;
- %% find blinks and set them to NaN
- if options.doBlinkRemoval
- fprintft('Removing blinks from eye tracker')
- for ii = 1:size(metadata.blinks.timestamps_edf,1)
- % Get start and end times of blink
- time_blink_start = metadata.blinks.timestamps_edf(ii,1);
- time_blink_end = metadata.blinks.timestamps_edf(ii,2);
- % Get index for start and end of blink
- [~,idx_blink_start] = min(abs(timestamps(:,1) - time_blink_start));
- [~,idx_blink_end] = min(abs(timestamps(:,1) - time_blink_end));
- % blink length (keep metadata about blinks)
- metadata.blinks.duration_samples(ii,1) = length(idx_blink_start:idx_blink_end);
- metadata.blinks.duration_time(ii,1) = length(idx_blink_start:idx_blink_end)/fs;
- % extend with buffer_samples on each side of blink (eye movements)
- idx_blink_eye_start = max(1,idx_blink_start-buffer_eye_samples);
- idx_blink_eye_end = min(length(data),idx_blink_end+buffer_eye_samples);
- % extend with buffer_samples on each side of blink (pupil size)
- idx_blink_pupil_start = max(1,idx_blink_start-buffer_pupil_samples);
- idx_blink_pupil_end = min(length(data),idx_blink_end+buffer_pupil_samples);
- % fill eye movemetns with nans
- mask_eye(idx_blink_eye_start:idx_blink_eye_end,1) = true;
- % fill pupil size with nans
- mask_pupil(idx_blink_pupil_start:idx_blink_pupil_end,1) = true;
- if rem(ii,50)==0
- fprintf('.')
- end
- end
- end
- fprintf('done\n')
- %% do closing operation on mask to remove small spurious outliers
- if options.imclose_pupil>0
- SE = strel("rectangle",[round(options.imclose_pupil*fs) 1]);
- mask_pupil = imclose(mask_pupil,SE);
- end
- % what is missing now?
- idx_missing_data.eye(:,end+1) = any(mask_eye,2);
- idx_missing_data.pupil(:,end+1) = any(mask_pupil,2);
- %% detect outliers in pupil signal (negative outliers are likely blinks,
- %% possitive outliers are likely imagine artefacts) and extend detected to the left and right
- if isfield(options, 'doBlinkArtefactRemoval') && options.doBlinkArtefactRemoval
- Nsamples = size(data,1);
- % only operate on valid samples
- idx_valid = ~isnan(data(:,idx_pupil));
- data_pupil_valid = data(idx_valid,idx_pupil);
- % find outliers
- k = 4; % really only extreem outliers
- d = data_pupil_valid - medfilt1(data_pupil_valid,round(fs*options.filter_length_mfd_pupil),'truncate'); % deviation from median
- mask_positive = d>k*iqr(d);
- mask_negative = d<-k*iqr(d);
- mask_blinks = false(Nsamples,1);
- mask_artifacts = false(Nsamples,1);
- clear data_pupil_valid
- % mark outlies as missing (in addition to what is already marked from the edf file)
- mask_blinks(idx_valid) = mask_negative;
- mask_artifacts(idx_valid) = mask_positive;
- % set even and odd index if either is set, so as to catch NaN from the upsampling
- if mod(find(mask_blinks,1),2)==0
- mask_blinks(1:2:end-1) = mask_blinks(1:2:end-1) | mask_blinks(2:2:end);
- mask_artifacts(1:2:end-1) = mask_artifacts(1:2:end-1) | mask_artifacts(2:2:end);
- else
- mask_blinks(2:2:end) = mask_blinks(1:2:end-1) | mask_blinks(2:2:end);
- mask_artifacts(2:2:end) = mask_artifacts(1:2:end-1) | mask_artifacts(2:2:end);
- end
- % finding start and stop of outlier data
- d_blinks = diff([0; mask_blinks(1:end-1); 0]); % add zero at begin/end in case that is also bad data
- metadata.blinks.timestamps_edf_additional = timestamps([find(d_blinks>0) find(d_blinks<0)]);
- d_artifacts = diff([0; mask_artifacts(1:end-1); 0]); % add zero at begin/end in case that is also bad data
- metadata.artifacts.timestamps_edf = timestamps([find(d_artifacts>0) find(d_artifacts<0)]);
- metadata.artifacts.duration_time = metadata.artifacts.timestamps_edf(:,2) - metadata.artifacts.timestamps_edf(:,1);
- timestamps_artifact_blinks = [metadata.blinks.timestamps_edf_additional; metadata.artifacts.timestamps_edf];
- %% remove the artifacts and blinks
- fprintft('Removing additional blinks/artifacts from eye tracker')
- for ii = 1:size(timestamps_artifact_blinks,1)
- % Get start and end times of blink
- time_blink_artifact_start = timestamps_artifact_blinks(ii,1);
- time_blink_artifact_end = timestamps_artifact_blinks(ii,2);
- % Get index for start and end of blink
- [~,idx_blink_artifact_start] = min(abs(timestamps(:,1) - time_blink_artifact_start));
- [~,idx_blink_artifact_end] = min(abs(timestamps(:,1) - time_blink_artifact_end));
- % fill pupil size with nans
- mask_pupil(idx_blink_artifact_start:idx_blink_artifact_end,2) = true;
- if rem(ii,50)==0
- fprintf('.')
- end
- end
- end
- %% combine all masks
- mask_eye = any(mask_eye,2);
- mask_pupil = any(mask_pupil,2);
- % what is missing now?
- idx_missing_data.eye(:,end+1) = any(mask_eye,2);
- idx_missing_data.pupil(:,end+1) = any(mask_pupil,2);
- %% replace missing data with NaNs
- data(mask_eye,idx_eyes) = NaN;
- data(mask_pupil,idx_pupil) = NaN;
- %% get timestamps of all the interpolated/missing data
- d_interpolated_pupil = diff([0; mask_pupil(1:end-1); 0]); % add zero at begin/end in case that is also bad data
- d_interpolated_eye = diff([0; mask_eye(1:end-1); 0]); % add zero at begin/end in case that is also bad data
- metadata.interpolated_eye.timestamps_edf = timestamps([find(d_interpolated_eye>0) find(d_interpolated_eye<0)]);
- metadata.interpolated_pupil.timestamps_edf = timestamps([find(d_interpolated_pupil>0) find(d_interpolated_pupil<0)]);
- %% fill in nans with linearly interpolated data
- if options.doBlinkInterpolation
- % take all the NaNs and use interpolation to fill in to values
- data(:,idx_eyes) = fillmissing(data(:,idx_eyes),options.interpolation_method,'EndValues','nearest');
- end
- if options.doBlinkInterpolation
- % take all the NaNs and use interpolation to fill in to values
- data(:,idx_pupil) = fillmissing(data(:,idx_pupil),options.interpolation_method,'EndValues','nearest');
- end
- % head
- data(:,idx_head) = fillmissing(data(:,idx_head),options.interpolation_method,'EndValues','nearest');
- if options.doVisualization
- datanames = {'eye_x','eye_y','pupil'};
- Ts = 1/options.fs_eyeheadtracking;
- Nsec = Ts*size(data,1);
- timeaxis = 0:Ts:Nsec-Ts;
- figure('Name','After blink correction','units','normalized','outerposition',[0 0 1 1])
- for iCord = 1:3
- subplot(3,1,iCord)
- plot(timeaxis,data(:,iCord),'k'), hold on
- if size(idx_missing_data.pupil,2)==3
- tmp = nan(size(data,1),1); tmp(idx_missing_data.pupil(:,3))=data(idx_missing_data.pupil(:,3),iCord); plot(timeaxis,tmp,'b'), hold on
- end
- tmp = nan(size(data,1),1); tmp(idx_missing_data.pupil(:,2))=data(idx_missing_data.pupil(:,2),iCord); plot(timeaxis,tmp,'r'), hold on
- tmp = nan(size(data,1),1); tmp(idx_missing_data.pupil(:,1))=data(idx_missing_data.pupil(:,1),iCord); plot(timeaxis,tmp,'g'), hold off
- xlim([min(timeaxis) max(timeaxis)])
- title(datanames{iCord})
- set(gca,'Position',get(gca,'Position') + [-0.11 -0.0 0.2 0.0])
- end
- figure
- plot(timeaxis,data(:,3),'k'), hold on
- end
- %% filter the eye tracking data to remove spurious blinks
- no_taps_eye = round(fs*options.filter_length_eye);
- if no_taps_eye>0
- data(:,idx_eyes) = medfilt1(data(:,idx_eyes)-data(1,idx_eyes),no_taps_eye)+data(1,idx_eyes);
- end
- %% filter the pupil data to remove spurious blinks
- no_taps_pupil = round(fs*options.filter_length_pupil);
- if no_taps_pupil>0
- data(:,idx_pupil) = medfilt1(data(:,idx_pupil)-data(1,idx_pupil),no_taps_eye)+data(1,idx_pupil);
- end
- %% filter the head movement data to remove spurious movement
- no_taps_head = round(fs*options.filter_length_head);
- if no_taps_head>0
- data(:,idx_head) = medfilt1(data(:,idx_head)-data(1,idx_head),no_taps_head)+data(1,idx_head);
- end
- %% remove initial sample offsets in data
- if data(1,1)~=mean(round(data(fs*0.1,1)))
- data(1:5,:) = NaN;
- data = fillmissing(data,'linear','EndValues','extrap');
- end
- fprintf('done\n')
- %% check if nan painting succeeded
- if any(isnan(data(:)))
- error('NaNs not cleaned')
- end
preprocessEyelinkData.m at commit 5109afa, no license · at the source
Overview
Abstract
The brain, body, and behavior dataset (BBBD) provides multimodal recordings from 178 participants across five experiments in which short educational videos were viewed. The dataset contains about 110 hours of electroencephalogram (EEG), electrooculogram (EOG), electrocardiogram (ECG), respiration, pupil size, gaze position, saccades, blinks, fixations, and head-motion signals, all time-aligned to the video and standardized in the Brain Imaging Data Structure (BIDS) format. Participants watched three to six videos (mean = 28 ± 5 min) under conditions that manipulated attention (attentive versus distracted), learning goals (incidental versus intentional), and motivation (monetary incentive). Demographic data, Adult ADHD Self-Report Scale (ASRS) scores, and digit-span working-memory assessments are included. Technical validation shows expected effects: higher alpha-band power during distraction, a posterior-to-anterior gradient in EEG power, increased blink rate, and reduced saccade rate when attention was diverted. Approximately 97 percent of the continuous signal data are newly released. BBBD enables investigation of how neural, ocular, and physiological dynamics relate to attention and learning during naturalistic video viewing.
Reproduced under the paper's license (CC BY), from the paper cited above.
Repository
Its files are read in the Code ↔ Paper reader above, with 19 matches between paragraphs and lines of code.
madjens/bbbd-dataset
5109afa0fd70c407b869108106f5808c6b0cc33c, 23 September 2026Availability: 1 check, the latest on 29 September 2026: the link answers
- 29 September 2026: the link answers
27 files
- data-download-scripts/
dowload-bbbd.py , Python, 40 lines - data-download-scripts/
download-bbbd.m , MATLAB, 38 lines - data-preprocessing/
postprocessEyelinkData.m , MATLAB, 146 lines, 2 matches - data-preprocessing/
preprocessECGdata.m , MATLAB, 199 lines - data-preprocessing/
preprocessEEGdata.m , MATLAB, 276 lines, 1 match - data-preprocessing/
preprocessEyelinkData.m , MATLAB, 258 lines, 3 matches - data-preprocessing/
preprocessRespirationDat , MATLAB, 116 linesa.m - data-reformatting/
bbbd_build_int_metadata. , MATLAB, 34 linesm - data-reformatting/
bbbd_generate_bids_descr , MATLAB, 362 lines, 2 matchesiptors.m - data-reformatting/
bbbd_generate_stimuli_qu , MATLAB, 30 linesestionnaire.m - data-reformatting/
bbbd_run_all.m , MATLAB, 129 lines - data-reformatting/
bids/ , MATLAB, 274 linesderived/ bbbd_123_derived_continu ous.m - data-reformatting/
bids/ , MATLAB, 232 linesderived/ bbbd_123_derived_discret e.m - data-reformatting/
bids/ , MATLAB, 352 linesderived/ bbbd_45_derived_continuo us.m - data-reformatting/
bids/ , MATLAB, 263 lines, 1 matchderived/ bbbd_45_derived_discrete .m - data-reformatting/
bids/ , MATLAB, 388 lines, 2 matchesraw/ bbbd_123_raw_eeg.m - data-reformatting/
bids/ , MATLAB, 381 lines, 2 matchesraw/ bbbd_123_raw_eye_heart.m - data-reformatting/
bids/ , MATLAB, 414 lines, 2 matchesraw/ bbbd_45_raw_eeg.m - data-reformatting/
bids/ , MATLAB, 407 lines, 2 matchesraw/ bbbd_45_raw_eye_heart.m - data-reformatting/
config.m , MATLAB, 14 lines - data-reformatting/
matrix/ , MATLAB, 99 linesbbbd_discrete_123.m - data-reformatting/
matrix/ , MATLAB, 107 linesbbbd_discrete_45.m - data-reformatting/
matrix/ , MATLAB, 200 linesbbbd_matrix_123.m - data-reformatting/
matrix/ , MATLAB, 199 linesbbbd_matrix_45.m - figures-reproduction/
figure-5b-topoplot.m , MATLAB, 207 lines - figures-reproduction/
figures-paper.ipynb , Jupyter, 854 lines, 2 matches - README.txt, Text, 6 lines
Code availability
We have released the code to reproduce the figures shown in this manuscript, convert the data into BIDS format and preprocess the raw signals in the following github repository: https://
Reproduced under the paper's license (CC BY), from the paper cited above.
Tracing map
Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.
What the map holds:
- 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
- 26 scripts, each with its path and the digest of its content;
- 19 matches between paragraphs of the paper and lines of the code (method lexical-v1);
- neither the text of the paper nor the code itself.
Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.
Data
Datasets cited
- github.com/
nemardatasets/ , at github.com; found in DataCitenm000147 - github.com/
nemardatasets/ , at github.com; found in DataCitenm000150 - zenodo:19241964, at Zenodo; found in “Data availability”
Data availability
The Brain, Body, and Behavior Dataset (BBBD) is publicly available through Zenodo30 (10.5281/
Reproduced under the paper's license (CC BY), from the paper cited above.
Versions
The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.
Version 1, 29 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 3 authors, 4 keywords, 14 MeSH terms, 1 funder, 45 references.
Cite
This paper
Madsen, J., Kuppa, N., & Parra, L. C. (2026). The Brain, Body, and Behavior Dataset (BBBD): Multimodal Recordings during Educational Videos. Scientific data, 13(1), 920. https://
BibTeX
@article{madsen2026brain
author = {Madsen, Jens and Kuppa, Nikhil and Parra, Lucas C.},
title = {{The Brain, Body, and Behavior Dataset (BBBD): Multimodal Recordings during Educational Videos}},
journal = {Scientific data},
year = {2026},
month = apr,
volume = {13},
number = {1},
pages = {920},
publisher = {Nature Publishing Group},
issn = {2052-4463},
doi = {10.1038/
url = {https://
pmid = {42014748},
pmcid = {PMC13284221}
}
RIS
TY - JOUR
AU - Madsen, Jens
AU - Kuppa, Nikhil
AU - Parra, Lucas C.
TI - The Brain, Body, and Behavior Dataset (BBBD): Multimodal Recordings during Educational Videos
T2 - Scientific data
J2 - Sci Data
PY - 2026
DA - 2026/
VL - 13
IS - 1
SP - 920
SN - 2052-4463
PB - Nature Publishing Group
DO - 10.1038/
UR - https://
LA - en
ER -
CSL-JSON
{
"id": "10.1038/
"type": "article-journal",
"title": "The Brain, Body, and Behavior Dataset (BBBD): Multimodal Recordings during Educational Videos",
"container-title": "Scientific data",
"author": [
{
"family": "Madsen",
"given": "Jens"
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{
"family": "Kuppa",
"given": "Nikhil"
},
{
"family": "Parra",
"given": "Lucas C."
}
],
"container-title-short":
"volume": "13",
"issue": "1",
"page": "920",
"DOI": "10.1038/
"PMID": "42014748",
"PMCID": "PMC13284221",
"ISSN": "2052-4463",
"publisher": "Nature Publishing Group",
"URL": "https://
"language": "en",
"issued": {
"date-parts": [
[
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]
}
}
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