OSCR

Time-resolved morphological and transcriptomic characterization of early enteric neuron subtype emergence in chick.

Overview

Authors: Maëlys André1, Raphael Gury1, Maxime Lepetit2, Franck Boismoreau1, Muriel Bozon1, Jérémy Ganofsky1, Cassandre Heritier-Tellier2, Ingrid Plotton3, Rémi Duclaux-Loras4,5, Noël Peretti4, Guillaume Marcy2, Valérie Castellani1, Julien Falk1
  1. MeLis, CNRS UMR 5284, INSERM U1314, Université Lyon 1, Lyon 69008, France
  2. Bioinformatic Platform of the Labex Cortex, Université Lyon 1, Lyon 69008, France
  3. Centre hospitalier universitaire de Lyon, laboratoire de biochimie et biologie moléculaire, Université Lyon 1, Bron 69500, France
  4. CarMEN laboratory, INSERM U1060, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement 1397, 69495 Pierre Benite, France, Centre hospitalier universitaire de Lyon, Gastroenterology, Hepatology and Nutrition Unit, Université Lyon 1, Bron 69500, France
  5. Centre International de Recherche en Infectiologie, INSERM U1111, Lyon 69007, France
Dates: received 7 May 2025; accepted 21 May 2026; published online 6 July 2026; in print 14 July 2026
Type: Research article · Language: English
License: CC BY-NC-ND
Identifiers: DOI 10.1073/pnas.2511442123 · PMID 42406957 · PMCID PMC13367782 · OpenAlex W7167472512
Open access: hybrid, a free copy (OpenAlex)
Status: code verified
Categories: genetics / omics (modality), human (organism), mouse (organism), other (organism), developmental (subfield)
Methods: Statistics, Evoked potentials
Keywords: embryonic development, chick embryo, enteric nervous system, neural crest, axon guidance
MeSH: Enteric Nervous System*, Neurons*, Transcriptome*, Animals, Axon Guidance, Axons, Chick Embryo, Gene Expression Regulation, Developmental, Humans, Mice, Neurodevelopment (* major topic)
Topic: Congenital gastrointestinal and neural anomalies (Surgery, Medicine), according to OpenAlex
Funding: Agence Nationale de la Recherche (ANR) (ENTRAX ANR-23-CE16-0011-01, ANR-11-IDEX-0007)
Citations: cited by 1 paper (Europe PMC); 89 references in the paper

Abstract

The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.

Code

No file of the authors' code could be read here: it is described below, and read at its source.

forge.univ-lyon1.fr/melis/castellani_lab

License: none: the authors keep all their rights
State: the link answers, verified on 27 September 2026
Evidence: the link answers
Software Heritage: not checked
Found in: “Data, Materials, and Software Availability”
Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation
Availability: 1 check, the latest on 27 September 2026: the link answers (HTTP 200)
  • 27 September 2026: the link answers (HTTP 200)

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 0 scripts, each with its path and the digest of its content;
  • no match between paragraphs and code yet;
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

Datasets cited

Code and data availability statement

The paper has a code and data availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:

Read it in the paper: doi.org/10.1073/pnas.2511442123.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 13 authors, 5 keywords, 11 MeSH terms, 1 funder, 87 references.

Cite

This paper

André, M., Gury, R., Lepetit, M., Boismoreau, F., Bozon, M., Ganofsky, J., Heritier-Tellier, C., Plotton, I., Duclaux-Loras, R., Peretti, N., Marcy, G., Castellani, V., & Falk, J. (2026). Time-resolved morphological and transcriptomic characterization of early enteric neuron subtype emergence in chick. Proceedings of the National Academy of Sciences of the United States of America, 123(28), e2511442123. https://doi.org/10.1073/pnas.2511442123

BibTeX

@article{andre2026time,
author = {André, Maëlys and Gury, Raphael and Lepetit, Maxime and Boismoreau, Franck and Bozon, Muriel and Ganofsky, Jérémy and Heritier-Tellier, Cassandre and Plotton, Ingrid and Duclaux-Loras, Rémi and Peretti, Noël and Marcy, Guillaume and Castellani, Valérie and Falk, Julien},
title = {{Time-resolved morphological and transcriptomic characterization of early enteric neuron subtype emergence in chick}},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
year = {2026},
month = jul,
volume = {123},
number = {28},
pages = {e2511442123},
publisher = {National Academy of Sciences},
issn = {0027-8424},
doi = {10.1073/pnas.2511442123},
url = {https://doi.org/10.1073/pnas.2511442123},
pmid = {42406957},
pmcid = {PMC13367782}
}

RIS

TY - JOUR
AU - André, Maëlys
AU - Gury, Raphael
AU - Lepetit, Maxime
AU - Boismoreau, Franck
AU - Bozon, Muriel
AU - Ganofsky, Jérémy
AU - Heritier-Tellier, Cassandre
AU - Plotton, Ingrid
AU - Duclaux-Loras, Rémi
AU - Peretti, Noël
AU - Marcy, Guillaume
AU - Castellani, Valérie
AU - Falk, Julien
TI - Time-resolved morphological and transcriptomic characterization of early enteric neuron subtype emergence in chick
T2 - Proceedings of the National Academy of Sciences of the United States of America
J2 - Proc Natl Acad Sci U S A
PY - 2026
DA - 2026/07/06
VL - 123
IS - 28
SP - e2511442123
SN - 0027-8424
PB - National Academy of Sciences
DO - 10.1073/pnas.2511442123
UR - https://doi.org/10.1073/pnas.2511442123
LA - en
ER -

CSL-JSON

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