Evolution of a central dopamine circuit underlies adaptation of a light-evoked sensorimotor response in the blind cavefish.
The 1 match
- [1] § MATERIALS AND METHODS › Live GCaMP light on and off response analysis ↔ mesmerize/viewer/main_window_pytemplate.py, lines 189–238 · score 0.56 · CaImAn, motion corrected, imported, max, stimulus, mapped
Paper
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The authors' code
Python · 240 lines · 15 KB · GPL-3.0 · 1 match
- # -*- coding: utf-8 -*-
- # Form implementation generated from reading ui file './main_window_pytemplate.ui'
- #
- # Created by: PyQt5 UI code generator 5.12
- #
- # WARNING! All changes made in this file will be lost!
- from PyQt5 import QtCore, QtGui, QtWidgets
- class Ui_MainWindow(object):
- def setupUi(self, MainWindow):
- MainWindow.setObjectName("MainWindow")
- MainWindow.resize(800, 600)
- self.centralwidget = QtWidgets.QWidget(MainWindow)
- self.centralwidget.setObjectName("centralwidget")
- MainWindow.setCentralWidget(self.centralwidget)
- self.menubar = QtWidgets.QMenuBar(MainWindow)
- self.menubar.setGeometry(QtCore.QRect(0, 0, 800, 30))
- self.menubar.setObjectName("menubar")
- self.menuFile = QtWidgets.QMenu(self.menubar)
- self.menuFile.setObjectName("menuFile")
- self.menuModules = QtWidgets.QMenu(self.menubar)
- self.menuModules.setObjectName("menuModules")
- self.menuLoad_images = QtWidgets.QMenu(self.menuModules)
- self.menuLoad_images.setObjectName("menuLoad_images")
- self.menuFemtonics = QtWidgets.QMenu(self.menuLoad_images)
- self.menuFemtonics.setObjectName("menuFemtonics")
- self.menuCaImAn_toolbox = QtWidgets.QMenu(self.menuModules)
- self.menuCaImAn_toolbox.setObjectName("menuCaImAn_toolbox")
- self.menuCustom_Modules = QtWidgets.QMenu(self.menubar)
- self.menuCustom_Modules.setObjectName("menuCustom_Modules")
- self.menuImage = QtWidgets.QMenu(self.menubar)
- self.menuImage.setObjectName("menuImage")
- self.menuProjections = QtWidgets.QMenu(self.menuImage)
- self.menuProjections.setObjectName("menuProjections")
- self.menuView = QtWidgets.QMenu(self.menubar)
- self.menuView.setObjectName("menuView")
- self.menuHelp = QtWidgets.QMenu(self.menubar)
- self.menuHelp.setObjectName("menuHelp")
- MainWindow.setMenuBar(self.menubar)
- self.statusbar = QtWidgets.QStatusBar(MainWindow)
- self.statusbar.setObjectName("statusbar")
- MainWindow.setStatusBar(self.statusbar)
- self.dockConsole = QtWidgets.QDockWidget(MainWindow)
- self.dockConsole.setFeatures(QtWidgets.QDockWidget.DockWidgetFloatable|QtWidgets.QDockWidget.DockWidgetMovable)
- self.dockConsole.setObjectName("dockConsole")
- self.dockWidgetContents = QtWidgets.QWidget()
- self.dockWidgetContents.setObjectName("dockWidgetContents")
- self.dockConsole.setWidget(self.dockWidgetContents)
- MainWindow.addDockWidget(QtCore.Qt.DockWidgetArea(8), self.dockConsole)
- self.actionOpen_work_environment = QtWidgets.QAction(MainWindow)
- self.actionOpen_work_environment.setObjectName("actionOpen_work_environment")
- self.actionSave_work_environment = QtWidgets.QAction(MainWindow)
- self.actionSave_work_environment.setObjectName("actionSave_work_environment")
- self.actionTiff_file = QtWidgets.QAction(MainWindow)
- self.actionTiff_file.setCheckable(False)
- self.actionTiff_file.setObjectName("actionTiff_file")
- self.actionMotion_Correction = QtWidgets.QAction(MainWindow)
- self.actionMotion_Correction.setCheckable(False)
- self.actionMotion_Correction.setObjectName("actionMotion_Correction")
- self.actionCNMF = QtWidgets.QAction(MainWindow)
- self.actionCNMF.setCheckable(False)
- self.actionCNMF.setObjectName("actionCNMF")
- self.actionROI_Manager = QtWidgets.QAction(MainWindow)
- self.actionROI_Manager.setCheckable(False)
- self.actionROI_Manager.setObjectName("actionROI_Manager")
- self.actionScript_Editor = QtWidgets.QAction(MainWindow)
- self.actionScript_Editor.setObjectName("actionScript_Editor")
- self.actionCNMF_E = QtWidgets.QAction(MainWindow)
- self.actionCNMF_E.setObjectName("actionCNMF_E")
- self.actionBatch_Manager = QtWidgets.QAction(MainWindow)
- self.actionBatch_Manager.setObjectName("actionBatch_Manager")
- self.actionDump_Work_Environment = QtWidgets.QAction(MainWindow)
- self.actionDump_Work_Environment.setObjectName("actionDump_Work_Environment")
- self.actionAdd_to_project = QtWidgets.QAction(MainWindow)
- self.actionAdd_to_project.setObjectName("actionAdd_to_project")
- self.actionResize = QtWidgets.QAction(MainWindow)
- self.actionResize.setObjectName("actionResize")
- self.actionCrop = QtWidgets.QAction(MainWindow)
- self.actionCrop.setObjectName("actionCrop")
- self.actionReset_Scale = QtWidgets.QAction(MainWindow)
- self.actionReset_Scale.setObjectName("actionReset_Scale")
- self.actionMeta_data = QtWidgets.QAction(MainWindow)
- self.actionMeta_data.setObjectName("actionMeta_data")
- self.actionMeasure = QtWidgets.QAction(MainWindow)
- self.actionMeasure.setObjectName("actionMeasure")
- self.actionStimulus_Mapping = QtWidgets.QAction(MainWindow)
- self.actionStimulus_Mapping.setObjectName("actionStimulus_Mapping")
- self.actionConsole = QtWidgets.QAction(MainWindow)
- self.actionConsole.setCheckable(True)
- self.actionConsole.setObjectName("actionConsole")
- self.actionWork_Environment_Info = QtWidgets.QAction(MainWindow)
- self.actionWork_Environment_Info.setObjectName("actionWork_Environment_Info")
- self.actionMean = QtWidgets.QAction(MainWindow)
- self.actionMean.setObjectName("actionMean")
- self.actionMax = QtWidgets.QAction(MainWindow)
- self.actionMax.setObjectName("actionMax")
- self.actionStandard_Deviation = QtWidgets.QAction(MainWindow)
- self.actionStandard_Deviation.setObjectName("actionStandard_Deviation")
- self.actionClose_all_projection_windows = QtWidgets.QAction(MainWindow)
- self.actionClose_all_projection_windows.setObjectName("actionClose_all_projection_windows")
- self.actionOpen_docs = QtWidgets.QAction(MainWindow)
- self.actionOpen_docs.setObjectName("actionOpen_docs")
- self.actionSuite2p_Importer = QtWidgets.QAction(MainWindow)
- self.actionSuite2p_Importer.setObjectName("actionSuite2p_Importer")
- self.actionCNMF_3D = QtWidgets.QAction(MainWindow)
- self.actionCNMF_3D.setObjectName("actionCNMF_3D")
- self.actionCaimanImportHDF5 = QtWidgets.QAction(MainWindow)
- self.actionCaimanImportHDF5.setObjectName("actionCaimanImportHDF5")
- self.actionVersion_0_2 = QtWidgets.QAction(MainWindow)
- font = QtGui.QFont()
- font.setBold(True)
- font.setWeight(75)
- self.actionVersion_0_2.setFont(font)
- self.actionVersion_0_2.setObjectName("actionVersion_0_2")
- self.actionCaimanDFOF = QtWidgets.QAction(MainWindow)
- self.actionCaimanDFOF.setObjectName("actionCaimanDFOF")
- self.actionReport_issue_bug = QtWidgets.QAction(MainWindow)
- self.actionReport_issue_bug.setObjectName("actionReport_issue_bug")
- self.actionQuestions_discussion = QtWidgets.QAction(MainWindow)
- self.actionQuestions_discussion.setObjectName("actionQuestions_discussion")
- self.action_mesc_importer = QtWidgets.QAction(MainWindow)
- self.action_mesc_importer.setObjectName("action_mesc_importer")
- self.action_mes_importer = QtWidgets.QAction(MainWindow)
- self.action_mes_importer.setObjectName("action_mes_importer")
- self.actionNuSeT_Segmentation = QtWidgets.QAction(MainWindow)
- self.actionNuSeT_Segmentation.setObjectName("actionNuSeT_Segmentation")
- self.actionInscopix_isxd = QtWidgets.QAction(MainWindow)
- self.actionInscopix_isxd.setObjectName("actionInscopix_isxd")
- self.menuFile.addAction(self.actionAdd_to_project)
- self.menuFile.addSeparator()
- self.menuFile.addAction(self.actionOpen_work_environment)
- self.menuFile.addAction(self.actionSave_work_environment)
- self.menuFile.addSeparator()
- self.menuFile.addAction(self.actionDump_Work_Environment)
- self.menuFemtonics.addAction(self.action_mesc_importer)
- self.menuFemtonics.addAction(self.action_mes_importer)
- self.menuLoad_images.addAction(self.actionTiff_file)
- self.menuLoad_images.addAction(self.menuFemtonics.menuAction())
- self.menuLoad_images.addAction(self.actionInscopix_isxd)
- self.menuCaImAn_toolbox.addAction(self.actionMotion_Correction)
- self.menuCaImAn_toolbox.addAction(self.actionCNMF)
- self.menuCaImAn_toolbox.addAction(self.actionCNMF_E)
- self.menuCaImAn_toolbox.addAction(self.actionCNMF_3D)
- self.menuCaImAn_toolbox.addAction(self.actionCaimanImportHDF5)
- self.menuCaImAn_toolbox.addAction(self.actionCaimanDFOF)
- self.menuModules.addAction(self.menuLoad_images.menuAction())
- self.menuModules.addAction(self.menuCaImAn_toolbox.menuAction())
- self.menuModules.addAction(self.actionROI_Manager)
- self.menuModules.addAction(self.actionNuSeT_Segmentation)
- self.menuModules.addAction(self.actionSuite2p_Importer)
- self.menuModules.addAction(self.actionStimulus_Mapping)
- self.menuModules.addAction(self.actionScript_Editor)
- self.menuModules.addSeparator()
- self.menuModules.addAction(self.actionBatch_Manager)
- self.menuModules.addSeparator()
- self.menuProjections.addAction(self.actionMean)
- self.menuProjections.addAction(self.actionMax)
- self.menuProjections.addAction(self.actionStandard_Deviation)
- self.menuProjections.addSeparator()
- self.menuProjections.addAction(self.actionClose_all_projection_windows)
- self.menuImage.addAction(self.actionReset_Scale)
- self.menuImage.addAction(self.actionResize)
- self.menuImage.addAction(self.actionCrop)
- self.menuImage.addSeparator()
- self.menuImage.addAction(self.actionMeasure)
- self.menuImage.addSeparator()
- self.menuImage.addAction(self.menuProjections.menuAction())
- self.menuView.addAction(self.actionWork_Environment_Info)
- self.menuView.addSeparator()
- self.menuView.addAction(self.actionConsole)
- self.menuHelp.addAction(self.actionOpen_docs)
- self.menuHelp.addSeparator()
- self.menuHelp.addAction(self.actionReport_issue_bug)
- self.menuHelp.addAction(self.actionQuestions_discussion)
- self.menubar.addAction(self.menuFile.menuAction())
- self.menubar.addAction(self.menuImage.menuAction())
- self.menubar.addAction(self.menuModules.menuAction())
- self.menubar.addAction(self.menuCustom_Modules.menuAction())
- self.menubar.addAction(self.menuView.menuAction())
- self.menubar.addAction(self.menuHelp.menuAction())
- self.retranslateUi(MainWindow)
- self.actionConsole.toggled['bool'].connect(self.dockConsole.setVisible)
- QtCore.QMetaObject.connectSlotsByName(MainWindow)
- def retranslateUi(self, MainWindow):
- _translate = QtCore.QCoreApplication.translate
- MainWindow.setWindowTitle(_translate("MainWindow", "MainWindow"))
- self.menuFile.setTitle(_translate("MainWindow", "&File"))
- self.menuModules.setTitle(_translate("MainWindow", "&Modules"))
- self.menuLoad_images.setTitle(_translate("MainWindow", "&Load images"))
- self.menuFemtonics.setTitle(_translate("MainWindow", "&Femtonics"))
- self.menuCaImAn_toolbox.setTitle(_translate("MainWindow", "&CaImAn toolbox"))
- self.menuCustom_Modules.setTitle(_translate("MainWindow", "&Plugins"))
- self.menuImage.setTitle(_translate("MainWindow", "&Image"))
- self.menuProjections.setTitle(_translate("MainWindow", "&Projections"))
- self.menuView.setTitle(_translate("MainWindow", "&View"))
- self.menuHelp.setTitle(_translate("MainWindow", "&Help"))
- self.dockConsole.setWindowTitle(_translate("MainWindow", "&Console: viewer"))
- self.actionOpen_work_environment.setText(_translate("MainWindow", "&Open work environment"))
- self.actionSave_work_environment.setText(_translate("MainWindow", "&Save work environment"))
- self.actionTiff_file.setText(_translate("MainWindow", "&Tiff file"))
- self.actionMotion_Correction.setText(_translate("MainWindow", "&Motion Correction"))
- self.actionCNMF.setText(_translate("MainWindow", "&CNMF"))
- self.actionROI_Manager.setText(_translate("MainWindow", "&ROI Manager"))
- self.actionROI_Manager.setShortcut(_translate("MainWindow", "Ctrl+R"))
- self.actionScript_Editor.setText(_translate("MainWindow", "Script &Editor"))
- self.actionCNMF_E.setText(_translate("MainWindow", "CNMF-&E"))
- self.actionBatch_Manager.setText(_translate("MainWindow", "&Batch Manager"))
- self.actionDump_Work_Environment.setText(_translate("MainWindow", "&Clear Work Environment"))
- self.actionAdd_to_project.setText(_translate("MainWindow", "&Add to project"))
- self.actionResize.setText(_translate("MainWindow", "Re&size"))
- self.actionCrop.setText(_translate("MainWindow", "&Crop"))
- self.actionReset_Scale.setText(_translate("MainWindow", "&Reset Scale"))
- self.actionMeta_data.setText(_translate("MainWindow", "&Meta data"))
- self.actionMeasure.setText(_translate("MainWindow", "&Measure Tool"))
- self.actionStimulus_Mapping.setText(_translate("MainWindow", "&Stimulus Mapping"))
- self.actionConsole.setText(_translate("MainWindow", "&Console"))
- self.actionWork_Environment_Info.setText(_translate("MainWindow", "&Work Environment Viewer"))
- self.actionMean.setText(_translate("MainWindow", "&Mean"))
- self.actionMax.setText(_translate("MainWindow", "Ma&x"))
- self.actionStandard_Deviation.setText(_translate("MainWindow", "&Standard Deviation"))
- self.actionClose_all_projection_windows.setText(_translate("MainWindow", "&Close all projection windows"))
- self.actionOpen_docs.setText(_translate("MainWindow", "&Open docs"))
- self.actionSuite2p_Importer.setText(_translate("MainWindow", "Suite&2p Importer"))
- self.actionCNMF_3D.setText(_translate("MainWindow", "CNMF &3D"))
- self.actionCaimanImportHDF5.setText(_translate("MainWindow", "&Import HDF5 result file"))
- self.actionVersion_0_2.setText(_translate("MainWindow", "&Version 0.2"))
- self.actionCaimanDFOF.setText(_translate("MainWindow", "&Detrend ΔF/F"))
- self.actionReport_issue_bug.setText(_translate("MainWindow", "&Report issue/bug"))
- self.actionQuestions_discussion.setText(_translate("MainWindow", "&Questions/discussion"))
- self.action_mesc_importer.setText(_translate("MainWindow", ".&mesc importer"))
- self.action_mes_importer.setText(_translate("MainWindow", ".mes &importer"))
- self.actionNuSeT_Segmentation.setText(_translate("MainWindow", "&NuSeT Segmentation"))
- self.actionInscopix_isxd.setText(_translate("MainWindow", "Inscopix isxd"))
main_window_pytemplate.py at commit 218cbbb, under GPL-3.0 · at the source
Overview
- Wilkes Honors College, Florida Atlantic University, Jupiter, FL, USA
- Department of Biology, Texas A&M University, College Station, TX, USA
- Department of Biological Sciences, Lehigh University, Bethlehem, PA, USA
Abstract
Adaptive behaviors emerge in novel environments through functional changes in neural circuits. While relationships between circuit function and behavior are well studied, how evolution shapes circuits to drive behavioral adaptation is poorly understood. The Mexican cavefish, Astyanax mexicanus, provides a unique genetically tractable model, with above ground eyed surface fish and multiple blind cavefish populations that have evolved in darkness. These differences in environment and vision offer a way to examine how neural circuits evolve. We examine differences in detection and behavioral responses to the nonvisual effects of light in cave and surface A. mexicanus. Both populations exhibit photokinesis: Surface fish become hyperactive after darkness, and cavefish after illumination. Using whole-brain functional imaging aligned to an established Astyanax brain atlas, we identify the caudal posterior tuberculum as key to light- and dark-induced photokinesis. Pan-neuronal GCaMP imaging shows that dark-sensitive neurons in surface fish are light-sensitive in cavefish. Light sensing depends on dopamine signaling, suggesting that a conserved dopamine circuit mediates photokinesis and highlighting Astyanax as a model for sensory adaptation.
Reproduced under the paper's license (CC BY), from the paper cited above.
Repositories
Its files are read in the Code ↔ Paper reader above, with 1 match between paragraphs and lines of code.
doi:10.5061/dryad.02v6wwqg3
Availability: 1 check, the latest on 28 September 2026: the link answers (HTTP 200)
- 28 September 2026: the link answers (HTTP 200)
kushalkolar/MESmerize
218cbbb70ad852392b68d1c3cadd41a6962cfbd1, 26 November 2023Availability: 1 check, the latest on 28 September 2026: the link answers
- 28 September 2026: the link answers
462 files
- docs/
source/ , Python, 210 linesconf.py - docs/
source/ , Jupyter, 170 linesuser_guides/ flowchart/ notebook_example.ipynb - mesmerize/
__init__.py , Python, 7 lines - mesmerize/
__main__.py , Python, 177 lines - mesmerize/
analysis/ , Python, 6 lines__init__.py - mesmerize/
analysis/ , Python, 102 linesbatch_manager_reader.py - mesmerize/
analysis/ , Python, 85 linesclustering_metrics.py - mesmerize/
analysis/ , Python, 145 linescompute_peak_features.py - mesmerize/
analysis/ , Python, 726 linesdata_types.py - mesmerize/
analysis/ , Python, 85 linesflowchart.py - mesmerize/
analysis/ , Python, 97 lineshistory_widget.py - mesmerize/
analysis/ , Python, 9 linesmath/ __init__.py - mesmerize/
analysis/ , Python, 262 linesmath/ cross_correlation.py - mesmerize/
analysis/ , Python, 188 linesmath/ drfft_dtw.py - mesmerize/
analysis/ , Python, 34 linesmath/ emd.py - mesmerize/
analysis/ , Python, 71 linesmath/ sosd.py - mesmerize/
analysis/ , Python, 294 linesmath/ tvregdiff.py - mesmerize/
analysis/ , Python, 166 linesmeta_clustering.py - mesmerize/
analysis/ , Python, 2 linespipeline/ __init__.py - mesmerize/
analysis/ , Python, 45 linespipeline/ containers.py - mesmerize/
analysis/ , Python, 4 linespipeline/ node_library/ __init__.py - mesmerize/
analysis/ , Python, 65 linespipeline/ node_library/ cluster.py - mesmerize/
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analysis/ , Python, 35 linespipeline/ node_library/ signal.py - mesmerize/
analysis/ , Python, 29 linespipeline/ node_library/ stats.py - mesmerize/
analysis/ , Python, 1 linepytemplates/ __init__.py - mesmerize/
analysis/ , Python, 67 linespytemplates/ mainwindow_pytemplate.py - mesmerize/
analysis/ , Python, 288 linespytemplates/ old/ PeakEditor_pytemplate.py - mesmerize/
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analysis/ , Python, 28 linespytemplates/ old/ beeswarm_plots_pytemplat e.py - mesmerize/
analysis/ , Python, 137 linespytemplates/ old/ pca_window_pytemplate.py - mesmerize/
analysis/ , Python, 190 linespytemplates/ old/ stats_gui_pytemplate.py - mesmerize/
analysis/ , Python, 52 linespytemplates/ old/ stats_peak_plots_pytempl ate.py - mesmerize/
analysis/ , Python, 52 linespytemplates/ old/ stim_plots_pytemplate.py - mesmerize/
analysis/ , Python, 62 linespytemplates/ plot_window_pytemplate.p y - mesmerize/
analysis/ , Python, 50 linesregister_sessions.py - mesmerize/
analysis/ , Python, 20 linessequences.py - mesmerize/
analysis/ , Python, 52 linessimple_plot_window.py - mesmerize/
analysis/ , Python, 164 linesstimulus_extraction.py - mesmerize/
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common/ , Python, 155 lines__init__.py - mesmerize/
common/ , Python, 240 linesconfiguration.py - mesmerize/
common/ , Python, 1 linehelp_info.py - mesmerize/
common/ , Python, 43 linesmisc_functions.py - mesmerize/
common/ , Python, 90 linesprocess_utils.py - mesmerize/
common/ , Python, 257 linesproject_config_window.py - mesmerize/
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common/ , Python, 263 linespytemplates/ project_config_pytemplat e.py - mesmerize/
common/ , Python, 142 linespytemplates/ system_config_pytemplate .py - mesmerize/
common/ , Python, 272 linespytemplates/ welcome_window_pytemplat e.py - mesmerize/
common/ , Python, 242 linesqdialogs.py - mesmerize/
common/ , Python, 105 linesstart.py - mesmerize/
common/ , Python, 141 linessystem_config_window.py - mesmerize/
common/ , Python, 414 linesutils.py - mesmerize/
common/ , Python, 319 lineswelcome_window.py - mesmerize/
common/ , Python, 100 lineswindow_manager.py - mesmerize/
misc_widgets/ , Python, 1 line__init__.py - mesmerize/
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plotting/ , Python, 9 linesvariants/ __init__.py - mesmerize/
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plotting/ , Python, 1 linewidgets/ space_map/ __init__.py - mesmerize/
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plotting/ , Python, 1 linewidgets/ stimulus_tuning/ __init__.py - mesmerize/
plotting/ , Python, 140 lineswidgets/ stimulus_tuning/ control_widget.py - mesmerize/
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plotting/ , Python, 1 linewidgets/ traceplot/ traceeplot_mpl.py - mesmerize/
plotting/ , Python, 1 linewidgets/ traceplot/ traceplot_pg.py - mesmerize/
project_manager/ , Python, 2 lines__init__.py - mesmerize/
project_manager/ , Python, 1 lineproject_browser/ __init__.py - mesmerize/
project_manager/ , Python, 264 linesproject_browser/ column_widget.py - mesmerize/
project_manager/ , Python, 59 linesproject_browser/ dataframe_columns_widget .py - mesmerize/
project_manager/ , Python, 136 linesproject_browser/ main_widget.py - mesmerize/
project_manager/ , Python, 169 linesproject_browser/ project_browser_window.p y - mesmerize/
project_manager/ , Python, 1 lineproject_browser/ pytemplates/ __init__.py - mesmerize/
project_manager/ , Python, 63 linesproject_browser/ pytemplates/ column_pytemplate.py - mesmerize/
project_manager/ , Python, 125 linesproject_browser/ pytemplates/ mainwindow_pytemplate.py - mesmerize/
project_manager/ , Python, 286 linesproject_browser/ tab_area_widget.py - mesmerize/
project_manager/ , Python, 220 linesproject_manager.py - mesmerize/
pyqtgraphCore/ , Python, 550 linesGraphicsScene/ GraphicsScene.py - mesmerize/
pyqtgraphCore/ , Python, 1 lineGraphicsScene/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 144 linesGraphicsScene/ exportDialog.py - mesmerize/
pyqtgraphCore/ , Python, 77 linesGraphicsScene/ exportDialogTemplate_pyq t.py - mesmerize/
pyqtgraphCore/ , Python, 64 linesGraphicsScene/ exportDialogTemplate_pyq t5.py - mesmerize/
pyqtgraphCore/ , Python, 63 linesGraphicsScene/ exportDialogTemplate_pys ide.py - mesmerize/
pyqtgraphCore/ , Python, 380 linesGraphicsScene/ mouseEvents.py - mesmerize/
pyqtgraphCore/ , Python, 56 linesPlotData.py - mesmerize/
pyqtgraphCore/ , Python, 155 linesPoint.py - mesmerize/
pyqtgraphCore/ , Python, 241 linesQt.py - mesmerize/
pyqtgraphCore/ , Python, 260 linesSRTTransform.py - mesmerize/
pyqtgraphCore/ , Python, 315 linesSRTTransform3D.py - mesmerize/
pyqtgraphCore/ , Python, 119 linesSignalProxy.py - mesmerize/
pyqtgraphCore/ , Python, 41 linesThreadsafeTimer.py - mesmerize/
pyqtgraphCore/ , Python, 35 linesTransform3D.py - mesmerize/
pyqtgraphCore/ , Python, 87 linesVector.py - mesmerize/
pyqtgraphCore/ , Python, 288 linesWidgetGroup.py - mesmerize/
pyqtgraphCore/ , Python, 330 linesWidgetGroup_OLD.py - mesmerize/
pyqtgraphCore/ , Python, 456 lines__init__.py - mesmerize/
pyqtgraphCore/ , Python, 604 linescanvas/ Canvas.py - mesmerize/
pyqtgraphCore/ , Python, 512 linescanvas/ CanvasItem.py - mesmerize/
pyqtgraphCore/ , Python, 76 linescanvas/ CanvasManager.py - mesmerize/
pyqtgraphCore/ , Python, 92 linescanvas/ CanvasTemplate_pyqt.py - mesmerize/
pyqtgraphCore/ , Python, 96 linescanvas/ CanvasTemplate_pyqt5.py - mesmerize/
pyqtgraphCore/ , Python, 95 linescanvas/ CanvasTemplate_pyside.py - mesmerize/
pyqtgraphCore/ , Python, 69 linescanvas/ TransformGuiTemplate_pyq t.py - mesmerize/
pyqtgraphCore/ , Python, 56 linescanvas/ TransformGuiTemplate_pyq t5.py - mesmerize/
pyqtgraphCore/ , Python, 55 linescanvas/ TransformGuiTemplate_pys ide.py - mesmerize/
pyqtgraphCore/ , Python, 3 linescanvas/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 254 linescolormap.py - mesmerize/
pyqtgraphCore/ , Python, 218 linesconfigfile.py - mesmerize/
pyqtgraphCore/ , Python, 65 linesconsole/ CmdInput.py - mesmerize/
pyqtgraphCore/ , Python, 398 linesconsole/ Console.py - mesmerize/
pyqtgraphCore/ , Python, 1 lineconsole/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 127 linesconsole/ template_pyqt.py - mesmerize/
pyqtgraphCore/ , Python, 119 linesconsole/ template_pyqt5.py - mesmerize/
pyqtgraphCore/ , Python, 107 linesconsole/ template_pyqt5_bak.py - mesmerize/
pyqtgraphCore/ , Python, 106 linesconsole/ template_pyside.py - mesmerize/
pyqtgraphCore/ , Python, 1,188 linesdebug.py - mesmerize/
pyqtgraphCore/ , Python, 277 linesdockarea/ Container.py - mesmerize/
pyqtgraphCore/ , Python, 361 linesdockarea/ Dock.py - mesmerize/
pyqtgraphCore/ , Python, 333 linesdockarea/ DockArea.py - mesmerize/
pyqtgraphCore/ , Python, 128 linesdockarea/ DockDrop.py - mesmerize/
pyqtgraphCore/ , Python, 2 linesdockarea/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 106 linesexceptionHandling.py - mesmerize/
pyqtgraphCore/ , Python, 83 linesexporters/ CSVExporter.py - mesmerize/
pyqtgraphCore/ , Python, 139 linesexporters/ Exporter.py - mesmerize/
pyqtgraphCore/ , Python, 58 linesexporters/ HDF5Exporter.py - mesmerize/
pyqtgraphCore/ , Python, 102 linesexporters/ ImageExporter.py - mesmerize/
pyqtgraphCore/ , Python, 128 linesexporters/ Matplotlib.py - mesmerize/
pyqtgraphCore/ , Python, 68 linesexporters/ PrintExporter.py - mesmerize/
pyqtgraphCore/ , Python, 442 linesexporters/ SVGExporter.py - mesmerize/
pyqtgraphCore/ , Python, 11 linesexporters/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 1 lineexporters/ tests/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 57 linesexporters/ tests/ test_csv.py - mesmerize/
pyqtgraphCore/ , Python, 77 linesexporters/ tests/ test_svg.py - mesmerize/
pyqtgraphCore/ , Python, 946 linesflowchart/ Flowchart.py - mesmerize/
pyqtgraphCore/ , Python, 80 linesflowchart/ FlowchartCtrlTemplate_py qt.py - mesmerize/
pyqtgraphCore/ , Python, 75 linesflowchart/ FlowchartCtrlTemplate_py qt5.py - mesmerize/
pyqtgraphCore/ , Python, 67 linesflowchart/ FlowchartCtrlTemplate_py qt5_backup.py - mesmerize/
pyqtgraphCore/ , Python, 66 linesflowchart/ FlowchartCtrlTemplate_py side.py - mesmerize/
pyqtgraphCore/ , Python, 41 linesflowchart/ FlowchartGraphicsView.py - mesmerize/
pyqtgraphCore/ , Python, 68 linesflowchart/ FlowchartTemplate_pyqt.p y - mesmerize/
pyqtgraphCore/ , Python, 55 linesflowchart/ FlowchartTemplate_pyqt5. py - mesmerize/
pyqtgraphCore/ , Python, 54 linesflowchart/ FlowchartTemplate_pyside .py - mesmerize/
pyqtgraphCore/ , Python, 653 linesflowchart/ Node.py - mesmerize/
pyqtgraphCore/ , Python, 87 linesflowchart/ NodeLibrary.py - mesmerize/
pyqtgraphCore/ , Python, 567 linesflowchart/ Terminal.py - mesmerize/
pyqtgraphCore/ , Python, 4 linesflowchart/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 123 linesflowchart/ library/ Biology.py - mesmerize/
pyqtgraphCore/ , Python, 142 linesflowchart/ library/ Clustering.py - mesmerize/
pyqtgraphCore/ , Python, 570 linesflowchart/ library/ Data.py - mesmerize/
pyqtgraphCore/ , Python, 325 linesflowchart/ library/ Display.py - mesmerize/
pyqtgraphCore/ , Python, 211 linesflowchart/ library/ Hierarchical.py - mesmerize/
pyqtgraphCore/ , Python, 413 linesflowchart/ library/ Math.py - mesmerize/
pyqtgraphCore/ , Python, 55 linesflowchart/ library/ Metrics.py - mesmerize/
pyqtgraphCore/ , Python, 73 linesflowchart/ library/ Neighbors.py - mesmerize/
pyqtgraphCore/ , Python, 684 linesflowchart/ library/ Signal.py - mesmerize/
pyqtgraphCore/ , Python, 89 linesflowchart/ library/ Statistics.py - mesmerize/
pyqtgraphCore/ , Python, 301 linesflowchart/ library/ Transform.py - mesmerize/
pyqtgraphCore/ , Python, 24 linesflowchart/ library/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 331 linesflowchart/ library/ common.py - mesmerize/
pyqtgraphCore/ , Python, 74 linesflowchart/ library/ original_nodes/ Operators.py - mesmerize/
pyqtgraphCore/ , Python, 357 linesflowchart/ library/ original_nodes/ functions.py - mesmerize/
pyqtgraphCore/ , Python, 52 linesfrozenSupport.py - mesmerize/
pyqtgraphCore/ , Python, 2,324 linesfunctions.py - mesmerize/
pyqtgraphCore/ , Python, 126 linesgraphicsItems/ ArrowItem.py - mesmerize/
pyqtgraphCore/ , Python, 1,076 linesgraphicsItems/ AxisItem.py - mesmerize/
pyqtgraphCore/ , Python, 168 linesgraphicsItems/ BarGraphItem.py - mesmerize/
pyqtgraphCore/ , Python, 58 linesgraphicsItems/ ButtonItem.py - mesmerize/
pyqtgraphCore/ , Python, 122 linesgraphicsItems/ CurvePoint.py - mesmerize/
pyqtgraphCore/ , Python, 149 linesgraphicsItems/ ErrorBarItem.py - mesmerize/
pyqtgraphCore/ , Python, 83 linesgraphicsItems/ FillBetweenItem.py - mesmerize/
pyqtgraphCore/ , Python, 941 linesgraphicsItems/ GradientEditorItem.py - mesmerize/
pyqtgraphCore/ , Python, 114 linesgraphicsItems/ GradientLegend.py - mesmerize/
pyqtgraphCore/ , Python, 147 linesgraphicsItems/ GraphItem.py - mesmerize/
pyqtgraphCore/ , Python, 581 linesgraphicsItems/ GraphicsItem.py - mesmerize/
pyqtgraphCore/ , Python, 171 linesgraphicsItems/ GraphicsLayout.py - mesmerize/
pyqtgraphCore/ , Python, 39 linesgraphicsItems/ GraphicsObject.py - mesmerize/
pyqtgraphCore/ , Python, 59 linesgraphicsItems/ GraphicsWidget.py - mesmerize/
pyqtgraphCore/ , Python, 110 linesgraphicsItems/ GraphicsWidgetAnchor.py - mesmerize/
pyqtgraphCore/ , Python, 120 linesgraphicsItems/ GridItem.py - mesmerize/
pyqtgraphCore/ , Python, 215 linesgraphicsItems/ HistogramLUTItem.py - mesmerize/
pyqtgraphCore/ , Python, 611 linesgraphicsItems/ ImageItem.py - mesmerize/
pyqtgraphCore/ , Python, 470 linesgraphicsItems/ InfiniteLine.py - mesmerize/
pyqtgraphCore/ , Python, 111 linesgraphicsItems/ IsocurveItem.py - mesmerize/
pyqtgraphCore/ , Python, 23 linesgraphicsItems/ ItemGroup.py - mesmerize/
pyqtgraphCore/ , Python, 142 linesgraphicsItems/ LabelItem.py - mesmerize/
pyqtgraphCore/ , Python, 174 linesgraphicsItems/ LegendItem.py - mesmerize/
pyqtgraphCore/ , Python, 290 linesgraphicsItems/ LinearRegionItem.py - mesmerize/
pyqtgraphCore/ , Python, 62 linesgraphicsItems/ MultiPlotItem.py - mesmerize/
pyqtgraphCore/ , Python, 606 linesgraphicsItems/ PlotCurveItem.py - mesmerize/
pyqtgraphCore/ , Python, 871 linesgraphicsItems/ PlotDataItem.py - mesmerize/
pyqtgraphCore/ , Python, 1,230 linesgraphicsItems/ PlotItem/ PlotItem.py - mesmerize/
pyqtgraphCore/ , Python, 1 linegraphicsItems/ PlotItem/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 182 linesgraphicsItems/ PlotItem/ plotConfigTemplate_pyqt. py - mesmerize/
pyqtgraphCore/ , Python, 169 linesgraphicsItems/ PlotItem/ plotConfigTemplate_pyqt5 .py - mesmerize/
pyqtgraphCore/ , Python, 168 linesgraphicsItems/ PlotItem/ plotConfigTemplate_pysid e.py - mesmerize/
pyqtgraphCore/ , Python, 2,336 linesgraphicsItems/ ROI.py - mesmerize/
pyqtgraphCore/ , Python, 71 linesgraphicsItems/ ScaleBar.py - mesmerize/
pyqtgraphCore/ , Python, 1,026 linesgraphicsItems/ ScatterPlotItem.py - mesmerize/
pyqtgraphCore/ , Python, 203 linesgraphicsItems/ TextItem.py - mesmerize/
pyqtgraphCore/ , Python, 124 linesgraphicsItems/ UIGraphicsItem.py - mesmerize/
pyqtgraphCore/ , Python, 99 linesgraphicsItems/ VTickGroup.py - mesmerize/
pyqtgraphCore/ , Python, 1,769 linesgraphicsItems/ ViewBox/ ViewBox.py - mesmerize/
pyqtgraphCore/ , Python, 269 linesgraphicsItems/ ViewBox/ ViewBoxMenu.py - mesmerize/
pyqtgraphCore/ , Python, 1 linegraphicsItems/ ViewBox/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 102 linesgraphicsItems/ ViewBox/ axisCtrlTemplate_pyqt.py - mesmerize/
pyqtgraphCore/ , Python, 89 linesgraphicsItems/ ViewBox/ axisCtrlTemplate_pyqt5.p y - mesmerize/
pyqtgraphCore/ , Python, 88 linesgraphicsItems/ ViewBox/ axisCtrlTemplate_pyside. py - mesmerize/
pyqtgraphCore/ , Python, 21 linesgraphicsItems/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 83 linesgraphicsWindows.py - mesmerize/
pyqtgraphCore/ , Python, 713 linesimageview/ ImageView.py - mesmerize/
pyqtgraphCore/ , Python, 154 linesimageview/ ImageViewTemplate_pyside .py - mesmerize/
pyqtgraphCore/ , Python, 123 linesimageview/ ImageView_pytemplate.py - mesmerize/
pyqtgraphCore/ , Python, 6 linesimageview/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 1,509 linesmetaarray/ MetaArray.py - mesmerize/
pyqtgraphCore/ , Python, 1 linemetaarray/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 24 linesmultiprocess/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 28 linesmultiprocess/ bootstrap.py - mesmerize/
pyqtgraphCore/ , Python, 332 linesmultiprocess/ parallelizer.py - mesmerize/
pyqtgraphCore/ , Python, 477 linesmultiprocess/ processes.py - mesmerize/
pyqtgraphCore/ , Python, 1,126 linesmultiprocess/ remoteproxy.py - mesmerize/
pyqtgraphCore/ , Python, 22 linesnumpy_fix.py - mesmerize/
pyqtgraphCore/ , Python, 300 linesopengl/ GLGraphicsItem.py - mesmerize/
pyqtgraphCore/ , Python, 471 linesopengl/ GLViewWidget.py - mesmerize/
pyqtgraphCore/ , Python, 506 linesopengl/ MeshData.py - mesmerize/
pyqtgraphCore/ , Python, 22 linesopengl/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 16 linesopengl/ glInfo.py - mesmerize/
pyqtgraphCore/ , Python, 64 linesopengl/ items/ GLAxisItem.py - mesmerize/
pyqtgraphCore/ , Python, 29 linesopengl/ items/ GLBarGraphItem.py - mesmerize/
pyqtgraphCore/ , Python, 88 linesopengl/ items/ GLBoxItem.py - mesmerize/
pyqtgraphCore/ , Python, 78 linesopengl/ items/ GLGridItem.py - mesmerize/
pyqtgraphCore/ , Python, 99 linesopengl/ items/ GLImageItem.py - mesmerize/
pyqtgraphCore/ , Python, 112 linesopengl/ items/ GLLinePlotItem.py - mesmerize/
pyqtgraphCore/ , Python, 227 linesopengl/ items/ GLMeshItem.py - mesmerize/
pyqtgraphCore/ , Python, 183 linesopengl/ items/ GLScatterPlotItem.py - mesmerize/
pyqtgraphCore/ , Python, 138 linesopengl/ items/ GLSurfacePlotItem.py - mesmerize/
pyqtgraphCore/ , Python, 230 linesopengl/ items/ GLVolumeItem.py - mesmerize/
pyqtgraphCore/ , Python, 1 lineopengl/ items/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 402 linesopengl/ shaders.py - mesmerize/
pyqtgraphCore/ , Python, 127 linesordereddict.py - mesmerize/
pyqtgraphCore/ , Python, 767 linesparametertree/ Parameter.py - mesmerize/
pyqtgraphCore/ , Python, 171 linesparametertree/ ParameterItem.py - mesmerize/
pyqtgraphCore/ , Python, 127 linesparametertree/ ParameterSystem.py - mesmerize/
pyqtgraphCore/ , Python, 154 linesparametertree/ ParameterTree.py - mesmerize/
pyqtgraphCore/ , Python, 381 linesparametertree/ SystemSolver.py - mesmerize/
pyqtgraphCore/ , Python, 5 linesparametertree/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 651 linesparametertree/ parameterTypes.py - mesmerize/
pyqtgraphCore/ , Python, 477 linespgcollections.py - mesmerize/
pyqtgraphCore/ , Python, 27 linespixmaps/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 19 linespixmaps/ compile.py - mesmerize/
pyqtgraphCore/ , Python, 1 linepixmaps/ pixmapData_2.py - mesmerize/
pyqtgraphCore/ , Python, 1 linepixmaps/ pixmapData_3.py - mesmerize/
pyqtgraphCore/ , Python, 29 linesptime.py - mesmerize/
pyqtgraphCore/ , Python, 58 linespython2_3.py - mesmerize/
pyqtgraphCore/ , Python, 516 linesreload.py - mesmerize/
pyqtgraphCore/ , Python, 2 linestests/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 634 linestests/ image_testing.py - mesmerize/
pyqtgraphCore/ , Python, 42 linestests/ test_exit_crash.py - mesmerize/
pyqtgraphCore/ , Python, 301 linestests/ test_functions.py - mesmerize/
pyqtgraphCore/ , Python, 25 linestests/ test_qt.py - mesmerize/
pyqtgraphCore/ , Python, 88 linestests/ test_ref_cycles.py - mesmerize/
pyqtgraphCore/ , Python, 39 linestests/ test_srttransform3d.py - mesmerize/
pyqtgraphCore/ , Python, 160 linestests/ test_stability.py - mesmerize/
pyqtgraphCore/ , Python, 55 linestests/ ui_testing.py - mesmerize/
pyqtgraphCore/ , Python, 64 linesunits.py - mesmerize/
pyqtgraphCore/ , Python, 1 lineutil/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 1 lineutil/ colorama/ __init__.py - mesmerize/
pyqtgraphCore/ , Python, 137 linesutil/ colorama/ win32.py - mesmerize/
pyqtgraphCore/ , Python, 120 linesutil/ colorama/ winterm.py - mesmerize/
pyqtgraphCore/ , Python, 102 linesutil/ cprint.py - mesmerize/
pyqtgraphCore/ , Python, 50 linesutil/ garbage_collector.py - mesmerize/
pyqtgraphCore/ , Python, 121 linesutil/ lru_cache.py - mesmerize/
pyqtgraphCore/ , Python, 94 linesutil/ mutex.py - mesmerize/
pyqtgraphCore/ , Python, 64 linesutil/ pil_fix.py - mesmerize/
pyqtgraphCore/ , Python, 24 lineswidgets/ BusyCursor.py - mesmerize/
pyqtgraphCore/ , Python, 93 lineswidgets/ CheckTable.py - mesmerize/
pyqtgraphCore/ , Python, 91 lineswidgets/ ColorButton.py - mesmerize/
pyqtgraphCore/ , Python, 249 lineswidgets/ ColorMapWidget.py - mesmerize/
pyqtgraphCore/ , Python, 266 lineswidgets/ ComboBox.py - mesmerize/
pyqtgraphCore/ , Python, 218 lineswidgets/ ComboBox_backup.py - mesmerize/
pyqtgraphCore/ , Python, 150 lineswidgets/ DataFilterWidget.py - mesmerize/
pyqtgraphCore/ , Python, 83 lineswidgets/ DataTreeWidget.py - mesmerize/
pyqtgraphCore/ , Python, 163 lineswidgets/ FeedbackButton.py - mesmerize/
pyqtgraphCore/ , Python, 14 lineswidgets/ FileDialog.py - mesmerize/
pyqtgraphCore/ , Python, 74 lineswidgets/ GradientWidget.py - mesmerize/
pyqtgraphCore/ , Python, 30 lineswidgets/ GraphicsLayoutWidget.py - mesmerize/
pyqtgraphCore/ , Python, 404 lineswidgets/ GraphicsView.py - mesmerize/
pyqtgraphCore/ , Python, 33 lineswidgets/ HistogramLUTWidget.py - mesmerize/
pyqtgraphCore/ , Python, 95 lineswidgets/ JoystickButton.py - mesmerize/
pyqtgraphCore/ , Python, 20 lineswidgets/ KwargPlainTextEdit.py - mesmerize/
pyqtgraphCore/ , Python, 101 lineswidgets/ LayoutWidget.py - mesmerize/
pyqtgraphCore/ , Python, 27 lineswidgets/ LineEdit.py - mesmerize/
pyqtgraphCore/ , Python, 47 lineswidgets/ ListWidget.py - mesmerize/
pyqtgraphCore/ , Python, 48 lineswidgets/ MatplotlibWidget.py - mesmerize/
pyqtgraphCore/ , Python, 78 lineswidgets/ MultiPlotWidget.py - mesmerize/
pyqtgraphCore/ , Python, 50 lineswidgets/ PathButton.py - mesmerize/
pyqtgraphCore/ , Python, 99 lineswidgets/ PlotWidget.py - mesmerize/
pyqtgraphCore/ , Python, 112 lineswidgets/ ProgressDialog.py - mesmerize/
pyqtgraphCore/ , Python, 143 lineswidgets/ RawImageWidget.py - mesmerize/
pyqtgraphCore/ , Python, 273 lineswidgets/ RemoteGraphicsView.py - mesmerize/
pyqtgraphCore/ , Python, 218 lineswidgets/ ScatterPlotWidget.py - mesmerize/
pyqtgraphCore/ , Python, 500 lineswidgets/ SpinBox.py - mesmerize/
pyqtgraphCore/ , Python, 498 lineswidgets/ TableWidget.py - mesmerize/
pyqtgraphCore/ , Python, 288 lineswidgets/ TreeWidget.py - mesmerize/
pyqtgraphCore/ , Python, 73 lineswidgets/ ValueLabel.py - mesmerize/
pyqtgraphCore/ , Python, 99 lineswidgets/ VerticalLabel.py - mesmerize/
pyqtgraphCore/ , Python, 21 lineswidgets/ __init__.py - mesmerize/
scripts/ , Python, 4 lines__init__.py - mesmerize/
scripts/ , Python, 21 linescreate_lite_project.py - mesmerize/
viewer/ , Python, 1 line__init__.py - mesmerize/
viewer/ , Python, 2 linescore/ __init__.py - mesmerize/
viewer/ , Python, 220 linescore/ add_to_project.py - mesmerize/
viewer/ , Python, 70 linescore/ add_to_project_dialog_py template.py - mesmerize/
viewer/ , Python, 37 linescore/ background_tiff_compress or.py - mesmerize/
viewer/ , Python, 123 linescore/ common.py - mesmerize/
viewer/ , Python, 89 linescore/ data_types.py - mesmerize/
viewer/ , Python, 79 linescore/ link_viewers.py - mesmerize/
viewer/ , Python, 56 linescore/ link_viewers_dialog_pyte mplate.py - mesmerize/
viewer/ , Python, 191 linescore/ mesfile.py - mesmerize/
viewer/ , Python, 44 linescore/ misc_funcs.py - mesmerize/
viewer/ , Python, 206 linescore/ organize_metadata.py - mesmerize/
viewer/ , Python, 666 linescore/ viewer_work_environment. py - mesmerize/
viewer/ , Python, 126 linesexport.py - mesmerize/
viewer/ , Python, 122 linesexporter_pytemplate.py - mesmerize/
viewer/ , Python, 1 lineimage_menu/ __init__.py - mesmerize/
viewer/ , Python, 33 linesimage_menu/ image_projections.py - mesmerize/
viewer/ , Python, 162 linesimage_menu/ main.py - mesmerize/
viewer/ , Python, 142 linesimage_menu/ resize.py - mesmerize/
viewer/ , Python, 1 lineimage_menu/ view_info.py - mesmerize/
viewer/ , Python, 3 linesimage_utils/ __init__.py - mesmerize/
viewer/ , Python, 111 linesimage_utils/ auto_crop.py - mesmerize/
viewer/ , Python, 50 linesimage_utils/ common.py - mesmerize/
viewer/ , Python, 560 linesmain_window.py - mesmerize/
viewer/ , Python, 240 lines, 1 matchmain_window_pytemplate.p y - mesmerize/
viewer/ , Python, 39 linesmodules/ __init__.py - mesmerize/
viewer/ , Python, 74 linesmodules/ _inscopix_importer.py - mesmerize/
viewer/ , Python, 870 linesmodules/ batch_manager.py - mesmerize/
viewer/ , Python, 342 linesmodules/ batch_run_modules/ CNMF.py - mesmerize/
viewer/ , Python, 367 linesmodules/ batch_run_modules/ CNMFE.py - mesmerize/
viewer/ , Python, 240 linesmodules/ batch_run_modules/ CNMF_3D.py - mesmerize/
viewer/ , Python, 11 linesmodules/ batch_run_modules/ __init__.py - mesmerize/
viewer/ , Python, 336 linesmodules/ batch_run_modules/ caiman_motion_correction .py - mesmerize/
viewer/ , Python, 179 linesmodules/ caiman_dfof.py - mesmerize/
viewer/ , Python, 92 linesmodules/ caiman_importer.py - mesmerize/
viewer/ , Python, 282 linesmodules/ caiman_motion_correction .py - mesmerize/
viewer/ , Python, 212 linesmodules/ cnmf.py - mesmerize/
viewer/ , Python, 215 linesmodules/ cnmf_3d.py - mesmerize/
viewer/ , Python, 259 linesmodules/ cnmfe.py - mesmerize/
viewer/ , Python, 11 linesmodules/ custom_modules/ __init__.py - mesmerize/
viewer/ , Python, 18 linesmodules/ custom_modules/ example_module.py - mesmerize/
viewer/ , Python, 118 linesmodules/ exporter.py - mesmerize/
viewer/ , Python, 424 linesmodules/ femtonics_mesc.py - mesmerize/
viewer/ , Python, 103 linesmodules/ inscopix_importer.py - mesmerize/
viewer/ , Python, 182 linesmodules/ mesfile_io.py - mesmerize/
viewer/ , Python, 1,342 linesmodules/ nuset_segment.py - mesmerize/
viewer/ , Python, 1 linemodules/ pytemplates/ __init__.py - mesmerize/
viewer/ , Python, 292 linesmodules/ pytemplates/ batch_manager_pytemplate .py - mesmerize/
viewer/ , Python, 58 linesmodules/ pytemplates/ caiman_importer_pytempla te.py - mesmerize/
viewer/ , Python, 325 linesmodules/ pytemplates/ caiman_motion_correction _pytemplate.py - mesmerize/
viewer/ , Python, 252 linesmodules/ pytemplates/ cnmf_3d_pytemplate.py - mesmerize/
viewer/ , Python, 428 linesmodules/ pytemplates/ cnmf_pytemplate.py - mesmerize/
viewer/ , Python, 481 linesmodules/ pytemplates/ cnmfe_pytemplate.py - mesmerize/
viewer/ , Python, 136 linesmodules/ pytemplates/ exporter_pytemplate.py - mesmerize/
viewer/ , Python, 153 linesmodules/ pytemplates/ femtonics_mesc_template. py - mesmerize/
viewer/ , Python, 48 linesmodules/ pytemplates/ mesfile_io_pytemplate.py - mesmerize/
viewer/ , Python, 206 linesmodules/ pytemplates/ roi_manager_pytemplate.p y - mesmerize/
viewer/ , Python, 69 linesmodules/ pytemplates/ script_editor_pytemplate .py - mesmerize/
viewer/ , Python, 92 linesmodules/ pytemplates/ suite2p_pytemplate.py - mesmerize/
viewer/ , Python, 169 linesmodules/ pytemplates/ tiff_io_pytemplate.py - mesmerize/
viewer/ , Python, 275 linesmodules/ roi_manager.py - mesmerize/
viewer/ , Python, 1 linemodules/ roi_manager_modules/ __init__.py - mesmerize/
viewer/ , Python, 1,062 linesmodules/ roi_manager_modules/ managers.py - mesmerize/
viewer/ , Python, 4 linesmodules/ roi_manager_modules/ read_imagej/ __init__.py - mesmerize/
viewer/ , Python, 400 linesmodules/ roi_manager_modules/ read_imagej/ _read_roi.py - mesmerize/
viewer/ , Python, 1 linemodules/ roi_manager_modules/ read_imagej/ _version.py - mesmerize/
viewer/ , Python, 79 linesmodules/ roi_manager_modules/ read_imagej/ test/ test_read_roi.py - mesmerize/
viewer/ , Python, 425 linesmodules/ roi_manager_modules/ roi_list.py - mesmerize/
viewer/ , Python, 32 linesmodules/ roi_manager_modules/ roi_tag_line_edit.py - mesmerize/
viewer/ , Python, 831 linesmodules/ roi_manager_modules/ roi_types.py - mesmerize/
viewer/ , Python, 105 linesmodules/ script_editor.py - mesmerize/
viewer/ , Python, 1 linemodules/ script_editor_modules/ __init__.py - mesmerize/
viewer/ , Python, 83 linesmodules/ script_editor_modules/ syntax_editor.py - mesmerize/
viewer/ , Python, 1 linemodules/ stimmap_modules/ __init__.py - mesmerize/
viewer/ , Python, 51 linesmodules/ stimmap_modules/ main_widget_pytemplate.p y - mesmerize/
viewer/ , Python, 112 linesmodules/ stimmap_modules/ page.py - mesmerize/
viewer/ , Python, 82 linesmodules/ stimmap_modules/ row.py - mesmerize/
viewer/ , Python, 54 linesmodules/ stimmap_modules/ tab_page_pytemplate.py - mesmerize/
viewer/ , Python, 211 linesmodules/ stimulus_mapping.py - mesmerize/
viewer/ , Python, 137 linesmodules/ stimulus_mapping_mesfile .py - mesmerize/
viewer/ , Python, 192 linesmodules/ suite2p.py - mesmerize/
viewer/ , Python, 216 linesmodules/ tiff_io.py - notebooks/
demo_batch_ingestion.ipy , Jupyter, 315 linesnb - setup.py, Python, 93 lines
- test_pip_install.sh, Shell, 9 lines
- tests/
__init__.py , Python, 1 line - tests/
analysis/ , Python, 11 linesstimulus_extraction.py - tests/
batch_manager.py , Python, 37 lines - tests/
cross_correlation.py , Python, 20 lines - tests/
heatmap_tracer.py , Python, 23 lines - tests/
kshapes.py , Python, 17 lines - tests/
nuset_test.py , Python, 35 lines - tests/
peak_editor.py , Python, 1 line - tests/
plots/ , Python, 4 lineslda.py - tests/
plots/ , Python, 10 linesscatter.py - tests/
proportions.py , Python, 38 lines - tests/
rfft_irfft_residuals.py , Python, 21 lines - tests/
stimulus_tuning_curves.p , Python, 22 linesy - tests/
viewer.py , Python, 62 lines - tests/
welcome_window.py , Python, 60 lines - LICENSE, License, 674 lines
- README.md, Text, 31 lines
The paper's code and data availability statement is in the Data section.
Tracing map
Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.
What the map holds:
- 2 repositories of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
- 460 scripts, each with its path and the digest of its content;
- 1 match between paragraphs of the paper and lines of the code (method lexical-v1);
- neither the text of the paper nor the code itself.
Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.
Data
No dataset and no data link were found in the paper.
Data, code, and materials availability
All data and code needed to evaluate and reproduce the results in the paper are present in the paper and/
Reproduced under the paper's license (CC BY), from the paper cited above.
Versions
The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.
Version 1, 28 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 6 authors, 8 MeSH terms, 4 funders, 82 references.
Cite
This paper
Kozol, R. A., Canavan, A., Tolentino, B., Keene, A. C., Kowalko, J. E., & Duboué, E. R. (2026). Evolution of a central dopamine circuit underlies adaptation of a light-evoked sensorimotor response in the blind cavefish. Science advances, 12(21), eadv3770. https://
BibTeX
@article{kozol2026evolut
author = {Kozol, Robert A. and Canavan, Ally and Tolentino, Bernadeth and Keene, Alex C. and Kowalko, Johanna E. and Duboué, Erik R.},
title = {{Evolution of a central dopamine circuit underlies adaptation of a light-evoked sensorimotor response in the blind cavefish}},
journal = {Science advances},
year = {2026},
month = may,
volume = {12},
number = {21},
pages = {eadv3770},
publisher = {American Association for the Advancement of Science},
issn = {2375-2548},
doi = {10.1126/
url = {https://
pmid = {42172323},
pmcid = {PMC13196759}
}
RIS
TY - JOUR
AU - Kozol, Robert A.
AU - Canavan, Ally
AU - Tolentino, Bernadeth
AU - Keene, Alex C.
AU - Kowalko, Johanna E.
AU - Duboué, Erik R.
TI - Evolution of a central dopamine circuit underlies adaptation of a light-evoked sensorimotor response in the blind cavefish
T2 - Science advances
J2 - Sci Adv
PY - 2026
DA - 2026/
VL - 12
IS - 21
SP - eadv3770
SN - 2375-2548
PB - American Association for the Advancement of Science
DO - 10.1126/
UR - https://
LA - en
ER -
CSL-JSON
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"page": "eadv3770",
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"PMID": "42172323",
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"ISSN": "2375-2548",
"publisher": "American Association for the Advancement of Science",
"URL": "https://
"language": "en",
"issued": {
"date-parts": [
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}
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