OSCR

Evolution of a central dopamine circuit underlies adaptation of a light-evoked sensorimotor response in the blind cavefish.

Code ↔ Paper

1 match between paragraphs of the paper and lines of its authors' code, computed by the harvester (lexical-v1). Click a colored paragraph or line to see its counterpart.

The 1 match
  1. [1] § MATERIALS AND METHODS › Live GCaMP light on and off response analysis ↔ mesmerize/viewer/main_window_pytemplate.py, lines 189–238 · score 0.56 · CaImAn, motion corrected, imported, max, stimulus, mapped

Paper

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The authors' code

Python · 240 lines · 15 KB · GPL-3.0 · 1 match

  1. # -*- coding: utf-8 -*-
  2. # Form implementation generated from reading ui file './main_window_pytemplate.ui'
  3. #
  4. # Created by: PyQt5 UI code generator 5.12
  5. #
  6. # WARNING! All changes made in this file will be lost!
  7. from PyQt5 import QtCore, QtGui, QtWidgets
  8. class Ui_MainWindow(object):
  9. def setupUi(self, MainWindow):
  10. MainWindow.setObjectName("MainWindow")
  11. MainWindow.resize(800, 600)
  12. self.centralwidget = QtWidgets.QWidget(MainWindow)
  13. self.centralwidget.setObjectName("centralwidget")
  14. MainWindow.setCentralWidget(self.centralwidget)
  15. self.menubar = QtWidgets.QMenuBar(MainWindow)
  16. self.menubar.setGeometry(QtCore.QRect(0, 0, 800, 30))
  17. self.menubar.setObjectName("menubar")
  18. self.menuFile = QtWidgets.QMenu(self.menubar)
  19. self.menuFile.setObjectName("menuFile")
  20. self.menuModules = QtWidgets.QMenu(self.menubar)
  21. self.menuModules.setObjectName("menuModules")
  22. self.menuLoad_images = QtWidgets.QMenu(self.menuModules)
  23. self.menuLoad_images.setObjectName("menuLoad_images")
  24. self.menuFemtonics = QtWidgets.QMenu(self.menuLoad_images)
  25. self.menuFemtonics.setObjectName("menuFemtonics")
  26. self.menuCaImAn_toolbox = QtWidgets.QMenu(self.menuModules)
  27. self.menuCaImAn_toolbox.setObjectName("menuCaImAn_toolbox")
  28. self.menuCustom_Modules = QtWidgets.QMenu(self.menubar)
  29. self.menuCustom_Modules.setObjectName("menuCustom_Modules")
  30. self.menuImage = QtWidgets.QMenu(self.menubar)
  31. self.menuImage.setObjectName("menuImage")
  32. self.menuProjections = QtWidgets.QMenu(self.menuImage)
  33. self.menuProjections.setObjectName("menuProjections")
  34. self.menuView = QtWidgets.QMenu(self.menubar)
  35. self.menuView.setObjectName("menuView")
  36. self.menuHelp = QtWidgets.QMenu(self.menubar)
  37. self.menuHelp.setObjectName("menuHelp")
  38. MainWindow.setMenuBar(self.menubar)
  39. self.statusbar = QtWidgets.QStatusBar(MainWindow)
  40. self.statusbar.setObjectName("statusbar")
  41. MainWindow.setStatusBar(self.statusbar)
  42. self.dockConsole = QtWidgets.QDockWidget(MainWindow)
  43. self.dockConsole.setFeatures(QtWidgets.QDockWidget.DockWidgetFloatable|QtWidgets.QDockWidget.DockWidgetMovable)
  44. self.dockConsole.setObjectName("dockConsole")
  45. self.dockWidgetContents = QtWidgets.QWidget()
  46. self.dockWidgetContents.setObjectName("dockWidgetContents")
  47. self.dockConsole.setWidget(self.dockWidgetContents)
  48. MainWindow.addDockWidget(QtCore.Qt.DockWidgetArea(8), self.dockConsole)
  49. self.actionOpen_work_environment = QtWidgets.QAction(MainWindow)
  50. self.actionOpen_work_environment.setObjectName("actionOpen_work_environment")
  51. self.actionSave_work_environment = QtWidgets.QAction(MainWindow)
  52. self.actionSave_work_environment.setObjectName("actionSave_work_environment")
  53. self.actionTiff_file = QtWidgets.QAction(MainWindow)
  54. self.actionTiff_file.setCheckable(False)
  55. self.actionTiff_file.setObjectName("actionTiff_file")
  56. self.actionMotion_Correction = QtWidgets.QAction(MainWindow)
  57. self.actionMotion_Correction.setCheckable(False)
  58. self.actionMotion_Correction.setObjectName("actionMotion_Correction")
  59. self.actionCNMF = QtWidgets.QAction(MainWindow)
  60. self.actionCNMF.setCheckable(False)
  61. self.actionCNMF.setObjectName("actionCNMF")
  62. self.actionROI_Manager = QtWidgets.QAction(MainWindow)
  63. self.actionROI_Manager.setCheckable(False)
  64. self.actionROI_Manager.setObjectName("actionROI_Manager")
  65. self.actionScript_Editor = QtWidgets.QAction(MainWindow)
  66. self.actionScript_Editor.setObjectName("actionScript_Editor")
  67. self.actionCNMF_E = QtWidgets.QAction(MainWindow)
  68. self.actionCNMF_E.setObjectName("actionCNMF_E")
  69. self.actionBatch_Manager = QtWidgets.QAction(MainWindow)
  70. self.actionBatch_Manager.setObjectName("actionBatch_Manager")
  71. self.actionDump_Work_Environment = QtWidgets.QAction(MainWindow)
  72. self.actionDump_Work_Environment.setObjectName("actionDump_Work_Environment")
  73. self.actionAdd_to_project = QtWidgets.QAction(MainWindow)
  74. self.actionAdd_to_project.setObjectName("actionAdd_to_project")
  75. self.actionResize = QtWidgets.QAction(MainWindow)
  76. self.actionResize.setObjectName("actionResize")
  77. self.actionCrop = QtWidgets.QAction(MainWindow)
  78. self.actionCrop.setObjectName("actionCrop")
  79. self.actionReset_Scale = QtWidgets.QAction(MainWindow)
  80. self.actionReset_Scale.setObjectName("actionReset_Scale")
  81. self.actionMeta_data = QtWidgets.QAction(MainWindow)
  82. self.actionMeta_data.setObjectName("actionMeta_data")
  83. self.actionMeasure = QtWidgets.QAction(MainWindow)
  84. self.actionMeasure.setObjectName("actionMeasure")
  85. self.actionStimulus_Mapping = QtWidgets.QAction(MainWindow)
  86. self.actionStimulus_Mapping.setObjectName("actionStimulus_Mapping")
  87. self.actionConsole = QtWidgets.QAction(MainWindow)
  88. self.actionConsole.setCheckable(True)
  89. self.actionConsole.setObjectName("actionConsole")
  90. self.actionWork_Environment_Info = QtWidgets.QAction(MainWindow)
  91. self.actionWork_Environment_Info.setObjectName("actionWork_Environment_Info")
  92. self.actionMean = QtWidgets.QAction(MainWindow)
  93. self.actionMean.setObjectName("actionMean")
  94. self.actionMax = QtWidgets.QAction(MainWindow)
  95. self.actionMax.setObjectName("actionMax")
  96. self.actionStandard_Deviation = QtWidgets.QAction(MainWindow)
  97. self.actionStandard_Deviation.setObjectName("actionStandard_Deviation")
  98. self.actionClose_all_projection_windows = QtWidgets.QAction(MainWindow)
  99. self.actionClose_all_projection_windows.setObjectName("actionClose_all_projection_windows")
  100. self.actionOpen_docs = QtWidgets.QAction(MainWindow)
  101. self.actionOpen_docs.setObjectName("actionOpen_docs")
  102. self.actionSuite2p_Importer = QtWidgets.QAction(MainWindow)
  103. self.actionSuite2p_Importer.setObjectName("actionSuite2p_Importer")
  104. self.actionCNMF_3D = QtWidgets.QAction(MainWindow)
  105. self.actionCNMF_3D.setObjectName("actionCNMF_3D")
  106. self.actionCaimanImportHDF5 = QtWidgets.QAction(MainWindow)
  107. self.actionCaimanImportHDF5.setObjectName("actionCaimanImportHDF5")
  108. self.actionVersion_0_2 = QtWidgets.QAction(MainWindow)
  109. font = QtGui.QFont()
  110. font.setBold(True)
  111. font.setWeight(75)
  112. self.actionVersion_0_2.setFont(font)
  113. self.actionVersion_0_2.setObjectName("actionVersion_0_2")
  114. self.actionCaimanDFOF = QtWidgets.QAction(MainWindow)
  115. self.actionCaimanDFOF.setObjectName("actionCaimanDFOF")
  116. self.actionReport_issue_bug = QtWidgets.QAction(MainWindow)
  117. self.actionReport_issue_bug.setObjectName("actionReport_issue_bug")
  118. self.actionQuestions_discussion = QtWidgets.QAction(MainWindow)
  119. self.actionQuestions_discussion.setObjectName("actionQuestions_discussion")
  120. self.action_mesc_importer = QtWidgets.QAction(MainWindow)
  121. self.action_mesc_importer.setObjectName("action_mesc_importer")
  122. self.action_mes_importer = QtWidgets.QAction(MainWindow)
  123. self.action_mes_importer.setObjectName("action_mes_importer")
  124. self.actionNuSeT_Segmentation = QtWidgets.QAction(MainWindow)
  125. self.actionNuSeT_Segmentation.setObjectName("actionNuSeT_Segmentation")
  126. self.actionInscopix_isxd = QtWidgets.QAction(MainWindow)
  127. self.actionInscopix_isxd.setObjectName("actionInscopix_isxd")
  128. self.menuFile.addAction(self.actionAdd_to_project)
  129. self.menuFile.addSeparator()
  130. self.menuFile.addAction(self.actionOpen_work_environment)
  131. self.menuFile.addAction(self.actionSave_work_environment)
  132. self.menuFile.addSeparator()
  133. self.menuFile.addAction(self.actionDump_Work_Environment)
  134. self.menuFemtonics.addAction(self.action_mesc_importer)
  135. self.menuFemtonics.addAction(self.action_mes_importer)
  136. self.menuLoad_images.addAction(self.actionTiff_file)
  137. self.menuLoad_images.addAction(self.menuFemtonics.menuAction())
  138. self.menuLoad_images.addAction(self.actionInscopix_isxd)
  139. self.menuCaImAn_toolbox.addAction(self.actionMotion_Correction)
  140. self.menuCaImAn_toolbox.addAction(self.actionCNMF)
  141. self.menuCaImAn_toolbox.addAction(self.actionCNMF_E)
  142. self.menuCaImAn_toolbox.addAction(self.actionCNMF_3D)
  143. self.menuCaImAn_toolbox.addAction(self.actionCaimanImportHDF5)
  144. self.menuCaImAn_toolbox.addAction(self.actionCaimanDFOF)
  145. self.menuModules.addAction(self.menuLoad_images.menuAction())
  146. self.menuModules.addAction(self.menuCaImAn_toolbox.menuAction())
  147. self.menuModules.addAction(self.actionROI_Manager)
  148. self.menuModules.addAction(self.actionNuSeT_Segmentation)
  149. self.menuModules.addAction(self.actionSuite2p_Importer)
  150. self.menuModules.addAction(self.actionStimulus_Mapping)
  151. self.menuModules.addAction(self.actionScript_Editor)
  152. self.menuModules.addSeparator()
  153. self.menuModules.addAction(self.actionBatch_Manager)
  154. self.menuModules.addSeparator()
  155. self.menuProjections.addAction(self.actionMean)
  156. self.menuProjections.addAction(self.actionMax)
  157. self.menuProjections.addAction(self.actionStandard_Deviation)
  158. self.menuProjections.addSeparator()
  159. self.menuProjections.addAction(self.actionClose_all_projection_windows)
  160. self.menuImage.addAction(self.actionReset_Scale)
  161. self.menuImage.addAction(self.actionResize)
  162. self.menuImage.addAction(self.actionCrop)
  163. self.menuImage.addSeparator()
  164. self.menuImage.addAction(self.actionMeasure)
  165. self.menuImage.addSeparator()
  166. self.menuImage.addAction(self.menuProjections.menuAction())
  167. self.menuView.addAction(self.actionWork_Environment_Info)
  168. self.menuView.addSeparator()
  169. self.menuView.addAction(self.actionConsole)
  170. self.menuHelp.addAction(self.actionOpen_docs)
  171. self.menuHelp.addSeparator()
  172. self.menuHelp.addAction(self.actionReport_issue_bug)
  173. self.menuHelp.addAction(self.actionQuestions_discussion)
  174. self.menubar.addAction(self.menuFile.menuAction())
  175. self.menubar.addAction(self.menuImage.menuAction())
  176. self.menubar.addAction(self.menuModules.menuAction())
  177. self.menubar.addAction(self.menuCustom_Modules.menuAction())
  178. self.menubar.addAction(self.menuView.menuAction())
  179. self.menubar.addAction(self.menuHelp.menuAction())
  180. self.retranslateUi(MainWindow)
  181. self.actionConsole.toggled['bool'].connect(self.dockConsole.setVisible)
  182. QtCore.QMetaObject.connectSlotsByName(MainWindow)
  183. def retranslateUi(self, MainWindow):
  184. _translate = QtCore.QCoreApplication.translate
  185. MainWindow.setWindowTitle(_translate("MainWindow", "MainWindow"))
  186. self.menuFile.setTitle(_translate("MainWindow", "&File"))
  187. self.menuModules.setTitle(_translate("MainWindow", "&Modules"))
  188. self.menuLoad_images.setTitle(_translate("MainWindow", "&Load images"))
  189. self.menuFemtonics.setTitle(_translate("MainWindow", "&Femtonics"))
  190. self.menuCaImAn_toolbox.setTitle(_translate("MainWindow", "&CaImAn toolbox"))
  191. self.menuCustom_Modules.setTitle(_translate("MainWindow", "&Plugins"))
  192. self.menuImage.setTitle(_translate("MainWindow", "&Image"))
  193. self.menuProjections.setTitle(_translate("MainWindow", "&Projections"))
  194. self.menuView.setTitle(_translate("MainWindow", "&View"))
  195. self.menuHelp.setTitle(_translate("MainWindow", "&Help"))
  196. self.dockConsole.setWindowTitle(_translate("MainWindow", "&Console: viewer"))
  197. self.actionOpen_work_environment.setText(_translate("MainWindow", "&Open work environment"))
  198. self.actionSave_work_environment.setText(_translate("MainWindow", "&Save work environment"))
  199. self.actionTiff_file.setText(_translate("MainWindow", "&Tiff file"))
  200. self.actionMotion_Correction.setText(_translate("MainWindow", "&Motion Correction"))
  201. self.actionCNMF.setText(_translate("MainWindow", "&CNMF"))
  202. self.actionROI_Manager.setText(_translate("MainWindow", "&ROI Manager"))
  203. self.actionROI_Manager.setShortcut(_translate("MainWindow", "Ctrl+R"))
  204. self.actionScript_Editor.setText(_translate("MainWindow", "Script &Editor"))
  205. self.actionCNMF_E.setText(_translate("MainWindow", "CNMF-&E"))
  206. self.actionBatch_Manager.setText(_translate("MainWindow", "&Batch Manager"))
  207. self.actionDump_Work_Environment.setText(_translate("MainWindow", "&Clear Work Environment"))
  208. self.actionAdd_to_project.setText(_translate("MainWindow", "&Add to project"))
  209. self.actionResize.setText(_translate("MainWindow", "Re&size"))
  210. self.actionCrop.setText(_translate("MainWindow", "&Crop"))
  211. self.actionReset_Scale.setText(_translate("MainWindow", "&Reset Scale"))
  212. self.actionMeta_data.setText(_translate("MainWindow", "&Meta data"))
  213. self.actionMeasure.setText(_translate("MainWindow", "&Measure Tool"))
  214. self.actionStimulus_Mapping.setText(_translate("MainWindow", "&Stimulus Mapping"))
  215. self.actionConsole.setText(_translate("MainWindow", "&Console"))
  216. self.actionWork_Environment_Info.setText(_translate("MainWindow", "&Work Environment Viewer"))
  217. self.actionMean.setText(_translate("MainWindow", "&Mean"))
  218. self.actionMax.setText(_translate("MainWindow", "Ma&x"))
  219. self.actionStandard_Deviation.setText(_translate("MainWindow", "&Standard Deviation"))
  220. self.actionClose_all_projection_windows.setText(_translate("MainWindow", "&Close all projection windows"))
  221. self.actionOpen_docs.setText(_translate("MainWindow", "&Open docs"))
  222. self.actionSuite2p_Importer.setText(_translate("MainWindow", "Suite&2p Importer"))
  223. self.actionCNMF_3D.setText(_translate("MainWindow", "CNMF &3D"))
  224. self.actionCaimanImportHDF5.setText(_translate("MainWindow", "&Import HDF5 result file"))
  225. self.actionVersion_0_2.setText(_translate("MainWindow", "&Version 0.2"))
  226. self.actionCaimanDFOF.setText(_translate("MainWindow", "&Detrend ΔF/F"))
  227. self.actionReport_issue_bug.setText(_translate("MainWindow", "&Report issue/bug"))
  228. self.actionQuestions_discussion.setText(_translate("MainWindow", "&Questions/discussion"))
  229. self.action_mesc_importer.setText(_translate("MainWindow", ".&mesc importer"))
  230. self.action_mes_importer.setText(_translate("MainWindow", ".mes &importer"))
  231. self.actionNuSeT_Segmentation.setText(_translate("MainWindow", "&NuSeT Segmentation"))
  232. self.actionInscopix_isxd.setText(_translate("MainWindow", "Inscopix isxd"))

main_window_pytemplate.py at commit 218cbbb, under GPL-3.0 · at the source

Overview

Authors: Robert A. Kozol1, Ally Canavan1, Bernadeth Tolentino1, Alex C. Keene2, Johanna E. Kowalko3, Erik R. Duboué1
  1. Wilkes Honors College, Florida Atlantic University, Jupiter, FL, USA
  2. Department of Biology, Texas A&M University, College Station, TX, USA
  3. Department of Biological Sciences, Lehigh University, Bethlehem, PA, USA
Institutions: Florida Atlantic University (United States); Texas A&M University (United States); Lehigh University (United States)
Journal: Science advances, volume 12, issue 21, article eadv3770
Dates: received 19 December 2024; accepted 17 April 2026; published online 22 May 2026; in print May 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1126/sciadv.adv3770 · PMID 42172323 · PMCID PMC13196759 · OpenAlex W7162072706
Open access: gold, a free copy (OpenAlex)
Status: code verified
Categories: other condition (population), systems (subfield)
Methods: Machine learning, Statistics, Single-unit activity, calcium imaging
MeSH: Adaptation, Physiological*, Biological Evolution*, Blindness*, Characidae*, Dopamine*, Animals, Brain, Light (* major topic)
Journal subjects: Neuroscience, Evolutionary Biology
Topic: Subterranean biodiversity and taxonomy (Paleontology, Earth and Planetary Sciences), according to OpenAlex
Funding: NIH (R15MH118625, R15MH132057, R01GM127872, R35GM138345, R15HD099022, R21NS122166, R24OD030214); HFSP (HFSP-RGP0062); BSF (BSF 2019262); NSF (iOS 1923372)
Citations: not cited yet (Europe PMC); 87 references in the paper

Abstract

Adaptive behaviors emerge in novel environments through functional changes in neural circuits. While relationships between circuit function and behavior are well studied, how evolution shapes circuits to drive behavioral adaptation is poorly understood. The Mexican cavefish, Astyanax mexicanus, provides a unique genetically tractable model, with above ground eyed surface fish and multiple blind cavefish populations that have evolved in darkness. These differences in environment and vision offer a way to examine how neural circuits evolve. We examine differences in detection and behavioral responses to the nonvisual effects of light in cave and surface A. mexicanus. Both populations exhibit photokinesis: Surface fish become hyperactive after darkness, and cavefish after illumination. Using whole-brain functional imaging aligned to an established Astyanax brain atlas, we identify the caudal posterior tuberculum as key to light- and dark-induced photokinesis. Pan-neuronal GCaMP imaging shows that dark-sensitive neurons in surface fish are light-sensitive in cavefish. Light sensing depends on dopamine signaling, suggesting that a conserved dopamine circuit mediates photokinesis and highlighting Astyanax as a model for sensory adaptation.

Reproduced under the paper's license (CC BY), from the paper cited above.

Repositories

Its files are read in the Code ↔ Paper reader above, with 1 match between paragraphs and lines of code.

doi:10.5061/dryad.02v6wwqg3

License: none: the authors keep all their rights
State: the link answers, verified on 28 September 2026
Evidence: the link answers
Software Heritage: not checked
Found in: “Data, code, and materials availability:”
Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation
Availability: 1 check, the latest on 28 September 2026: the link answers (HTTP 200)
  • 28 September 2026: the link answers (HTTP 200)

kushalkolar/MESmerize

License: GPL-3.0
State: the link answers, verified on 28 September 2026
Evidence: files inventoried
Commit: 218cbbb70ad852392b68d1c3cadd41a6962cfbd1, 26 November 2023
Languages: Python (457), Jupyter (2), Shell (1)
Size: 908 files, 460 scripts
Software Heritage: not archived
Found in: DataCite
Holds: README, license file, environment (requirements.txt, requirements_rtd.txt, requirements_win.txt, setup.py, docs/requirements.txt), tests, documentation, 2 notebooks
Not found: CITATION.cff, continuous integration
Tools: NumPy (147 files), pandas (48 files), SciPy (19 files), Matplotlib (15 files), tifffile (15 files), CaImAn (11 files), scikit-learn (8 files), OpenCV (7 files), seaborn (6 files), h5py (4 files), scikit-image (2 files), TensorFlow (2 files), Pillow (1 file)
Availability: 1 check, the latest on 28 September 2026: the link answers
  • 28 September 2026: the link answers
462 files

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 2 repositories of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 460 scripts, each with its path and the digest of its content;
  • 1 match between paragraphs of the paper and lines of the code (method lexical-v1);
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

No dataset and no data link were found in the paper.

Data, code, and materials availability

All data and code needed to evaluate and reproduce the results in the paper are present in the paper and/or the Supplementary Materials. All data, tables with statistical values, and custom codes are freely accessible and can be found in a Dryad repository, https://doi.org/10.5061/dryad.02v6wwqg3. All other data needed to evaluate the conclusions in this paper are present in the paper and/or the Supplementary Materials. This study did not generate new materials.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 28 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 6 authors, 8 MeSH terms, 4 funders, 82 references.

Cite

This paper

Kozol, R. A., Canavan, A., Tolentino, B., Keene, A. C., Kowalko, J. E., & Duboué, E. R. (2026). Evolution of a central dopamine circuit underlies adaptation of a light-evoked sensorimotor response in the blind cavefish. Science advances, 12(21), eadv3770. https://doi.org/10.1126/sciadv.adv3770

BibTeX

@article{kozol2026evolution,
author = {Kozol, Robert A. and Canavan, Ally and Tolentino, Bernadeth and Keene, Alex C. and Kowalko, Johanna E. and Duboué, Erik R.},
title = {{Evolution of a central dopamine circuit underlies adaptation of a light-evoked sensorimotor response in the blind cavefish}},
journal = {Science advances},
year = {2026},
month = may,
volume = {12},
number = {21},
pages = {eadv3770},
publisher = {American Association for the Advancement of Science},
issn = {2375-2548},
doi = {10.1126/sciadv.adv3770},
url = {https://doi.org/10.1126/sciadv.adv3770},
pmid = {42172323},
pmcid = {PMC13196759}
}

RIS

TY - JOUR
AU - Kozol, Robert A.
AU - Canavan, Ally
AU - Tolentino, Bernadeth
AU - Keene, Alex C.
AU - Kowalko, Johanna E.
AU - Duboué, Erik R.
TI - Evolution of a central dopamine circuit underlies adaptation of a light-evoked sensorimotor response in the blind cavefish
T2 - Science advances
J2 - Sci Adv
PY - 2026
DA - 2026/05/22
VL - 12
IS - 21
SP - eadv3770
SN - 2375-2548
PB - American Association for the Advancement of Science
DO - 10.1126/sciadv.adv3770
UR - https://doi.org/10.1126/sciadv.adv3770
LA - en
ER -

CSL-JSON

{
"id": "10.1126/sciadv.adv3770",
"type": "article-journal",
"title": "Evolution of a central dopamine circuit underlies adaptation of a light-evoked sensorimotor response in the blind cavefish",
"container-title": "Science advances",
"author": [
{
"family": "Kozol",
"given": "Robert A."
},
{
"family": "Canavan",
"given": "Ally"
},
{
"family": "Tolentino",
"given": "Bernadeth"
},
{
"family": "Keene",
"given": "Alex C."
},
{
"family": "Kowalko",
"given": "Johanna E."
},
{
"family": "Duboué",
"given": "Erik R."
}
],
"container-title-short": "Sci Adv",
"volume": "12",
"issue": "21",
"page": "eadv3770",
"DOI": "10.1126/sciadv.adv3770",
"PMID": "42172323",
"PMCID": "PMC13196759",
"ISSN": "2375-2548",
"publisher": "American Association for the Advancement of Science",
"URL": "https://doi.org/10.1126/sciadv.adv3770",
"language": "en",
"issued": {
"date-parts": [
[
2026,
5,
22
]
]
}
}

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The papers with a page that share the most with this one: the tools found in their code, their categories, datasets, cited references and authors, the rarest counting most.

[1] doi:10.1016/j.isci.2026.116206 [code]
Gut distension evokes rapid neural dynamics in vagal and hindbrain populations of larval zebrafish.
Journal: iScience
In common: CaImAn, tifffile, OpenCV, 8 other tools, systems, 1 reference
[2] doi:10.1038/s41592-026-03179-7 [code]
Voltage imaging of neurons distributed across entire brains of larval zebrafish.
Journal: Nature methods
In common: CaImAn, TensorFlow, OpenCV, 5 other tools, systems, 3 references
[3] doi:10.1016/j.xcrm.2026.102766 [code]
A longitudinal single-cell and spatial multiomic atlas of pediatric high-grade glioma.
Journal: Cell reports. Medicine
In common: tifffile, TensorFlow, OpenCV, 9 other tools, other condition
[4] doi:10.1016/j.xpro.2026.104659 [code]
Protocol for simultaneous in vivo two-photon imaging and locomotion quantification during olfactory stimulation and pharmacology in walking Drosophila.
Journal: STAR protocols
In common: CaImAn, tifffile, OpenCV, 7 other tools, 1 reference
[5] doi: [code]
Real-time closed-loop feedback system for mouse mesoscale cortical signal and movement control
Journal: eLife
In common: tifffile, TensorFlow, OpenCV, 9 other tools
[6] doi:10.1364/boe.605322 [code]
Generalized plaque digitization framework for multi-dimensional mesoscopic images.
Journal: Biomedical optics express
In common: tifffile, TensorFlow, OpenCV, 9 other tools
[7] doi:10.1038/s41467-026-76242-8 [code]
Whole-brain, all-optical interrogation of neuronal dynamics underlying gut and vascular interoception in zebrafish.
Journal: Nature communications
In common: tifffile, OpenCV, scikit-image, 6 other tools, systems, 2 references
[8] doi:10.3389/fnsys.2026.1822122 [code]
Convergence-divergence circuits for multimodal integration of innate and learned opponent valences.
Journal: Frontiers in systems neuroscience
In common: tifffile, TensorFlow, scikit-image, 8 other tools, systems
[9] doi:10.1016/j.patter.2026.101538 [code]
A multi-modal foundation model for brain disease diagnosis and medical imaging.
Journal: Patterns (New York, N.Y.)
In common: tifffile, TensorFlow, OpenCV, 8 other tools
[10] doi:10.7554/elife.109717 [code]
Retrosplenial cortex enables context-dependent goal-directed sensorimotor transformation.
Journal: eLife
In common: tifffile, OpenCV, scikit-image, 8 other tools, systems

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