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Directional guidance to orient Schwann cell alignment in nerve regeneration requires Plexin-B1.

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Paper

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The authors' code

Python · 1 line · 25 B · no license

  1. __all__ = ["ngs_helper"]

__init__.py at commit 5df2fb1, no license · at the source

Overview

  1. Department of Orthopedics, The Second Affiliated Hospital of Xi’an Jiaotong University, Xi’an, China
  2. Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA
  3. Department of Orthopedics, Tongji Hospital, Tongji University School of Medicine, Shanghai, China
  4. Department of Orthopedics, Xi’an International Medical Center Hospital, Xi’an, China
  5. Department of Neurosurgery, Icahn School of Medicine at Mount Sinai, New York, NY, USA
Journal: Science advances, volume 12, issue 17, article eadw4136
Dates: received 31 January 2025; accepted 23 March 2026; published online 24 April 2026; in print April 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1126/sciadv.adw4136 · PMID 42030397 · PMCID PMC13108569 · OpenAlex W7155557285
Open access: gold, a free copy (OpenAlex)
Status: code verified
Categories: mouse (organism), cellular / molecular (subfield)
Methods: Statistics, Preprocessing, fMRI & imaging, Smoothing, state filtering, decompositions
MeSH: Nerve Regeneration*, Nerve Tissue Proteins*, Receptors, Cell Surface*, Schwann Cells*, Animals, Axons, Macrophages, Mice (* major topic)
Topic: Axon Guidance and Neuronal Signaling (Cellular and Molecular Neuroscience, Neuroscience), according to OpenAlex
Funding: NINDS NIH HHS (R01 NS127442); New York State Department of Health (DOH01-C39068GG, DOH01-C38330GG); National Institutes of Health (RF1AG077828)
Citations: not cited yet (Europe PMC); 70 references in the paper

Abstract

Directional cues are essential for orienting cells during tissue morphogenesis and repair. In peripheral nerve regeneration, Schwann cells (SCs) align longitudinally in the nerve bridge to guide axonal pathfinding, but the mechanisms are not fully understood. We show here that after nerve injury, activated SCs up-regulate the guidance receptor Plexin-B1, enabling membrane plasticity required for SC polarization and longitudinal alignment along the axons. Aligned axon-SC provides positional cues to orient macrophages and extracellular matrix. Loss of Plexin-B1 disrupts SC morphological transformation, contact inhibition of locomotion between SCs, and axon-SC alignment, leading to SC misorientation, excessive inflammation, and delayed axon regeneration and functional recovery. These findings identify Plexin-B1 as a key orchestrator to orient SCs by regulating both SC-SC and axon-SC interactions during nerve repair. Elucidating the mechanisms of spatial guidance in nerve repair after injury has potential implications for therapeutic strategies to enhance neural regeneration.

Reproduced under the paper's license (CC BY), from the paper cited above.

Repository

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shenlab-sinai/NGS-Data-Charmer

License: none: the authors keep all their rights
State: the link answers, verified on 30 September 2026
Evidence: files inventoried
Commit: 5df2fb1a99b59e35ad415f07c06d6cc5a5ef26ab, 24 January 2024
Languages: Python (3), Shell (2)
Size: 21 files, 5 scripts
Software Heritage: not archived
Found in: the text, “RNA-seq analysis”
Holds: README, environment (environment.yaml)
Not found: license file, CITATION.cff, tests, continuous integration, documentation
Tools: Snakemake (2 files), Biopython (1 file), pandas (1 file)
Availability: 1 check, the latest on 30 September 2026: the link answers
  • 30 September 2026: the link answers
6 files

The paper's code and data availability statement is in the Data section.

Tracing map

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What the map holds:

  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 5 scripts, each with its path and the digest of its content;
  • no match between paragraphs and code yet;
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

Datasets cited

Data, code, and materials availability

All data and code needed to evaluate and reproduce the results in the paper are present in the paper and/or the Supplementary Materials. The RNA-seq data have been deposited at the NCBI Gene Expression Omnibus (GEO) database under accession number GSE288890 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288890). There are no new materials generated in the study.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

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Version 1, 30 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 10 authors, 8 MeSH terms, 3 funders, 68 references.

Cite

This paper

Li, J., Ni, H., Halawani, D., Estill, M., Ramakrishnan, A., Alves, C. J., Shen, L., He, X., Friedel, R. H., & Zou, H. (2026). Directional guidance to orient Schwann cell alignment in nerve regeneration requires Plexin-B1. Science advances, 12(17), eadw4136. https://doi.org/10.1126/sciadv.adw4136

BibTeX

@article{li2026directional,
author = {Li, Jiaxi and Ni, Haofei and Halawani, Dalia and Estill, Molly and Ramakrishnan, Aarthi and Alves, Chrystian Junqueira and Shen, Li and He, Xijing and Friedel, Roland H and Zou, Hongyan},
title = {{Directional guidance to orient Schwann cell alignment in nerve regeneration requires Plexin-B1}},
journal = {Science advances},
year = {2026},
month = apr,
volume = {12},
number = {17},
pages = {eadw4136},
publisher = {American Association for the Advancement of Science},
issn = {2375-2548},
doi = {10.1126/sciadv.adw4136},
url = {https://doi.org/10.1126/sciadv.adw4136},
pmid = {42030397},
pmcid = {PMC13108569}
}

RIS

TY - JOUR
AU - Li, Jiaxi
AU - Ni, Haofei
AU - Halawani, Dalia
AU - Estill, Molly
AU - Ramakrishnan, Aarthi
AU - Alves, Chrystian Junqueira
AU - Shen, Li
AU - He, Xijing
AU - Friedel, Roland H
AU - Zou, Hongyan
TI - Directional guidance to orient Schwann cell alignment in nerve regeneration requires Plexin-B1
T2 - Science advances
J2 - Sci Adv
PY - 2026
DA - 2026/04/24
VL - 12
IS - 17
SP - eadw4136
SN - 2375-2548
PB - American Association for the Advancement of Science
DO - 10.1126/sciadv.adw4136
UR - https://doi.org/10.1126/sciadv.adw4136
LA - en
ER -

CSL-JSON

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