Evolutionary signatures in deep white matter architecture: A comparative study of humans and chimpanzees.

Code ↔ Paper

7 matches between paragraphs of the paper and lines of its authors' code, computed by the harvester (lexical-v1). Click a colored paragraph or line to see its counterpart.

The 7 matches

[1] § Material and Methods › Chimpanzee cohort and analysis ↔ dmri/src/library/gkg-dmri-tractography/RegularizedDeterministicTractographyAlgorithm.h, lines 1–64 · score 0.78 · regularized deterministic tractography, aperture angle, GFA threshold, streamline, algorithm, voxel
[2] § Material and Methods › Chimpanzee cohort and analysis ↔ dmri/src/library/gkg-dmri-tractography/RegularizedDeterministicTractographyAlgorithm_i.h, lines 428–509 · score 0.75 · regularized deterministic tractography, aperture angle, orientation distribution functions, GFA, algorithm, ODF
[3] § Material and Methods › Human cohort and analysis › Fiber clustering ↔ dmri/src/plugin/gkg-dmri-plugin-functors/DwiIntraSubjectFiberClustering/DwiIntraSubjectFiberClusteringCommand.h, lines 1–72 · score 0.62 · connectivity matrix, fiber length, parcels, watershed, clustering, density
[4] § Material and Methods › Comparison of human and chimpanzee DWMBs › Morphological analysis using isomaps ↔ pcpm/distance/libpointmatcher.py, lines 260–318 · score 0.58 · affine transformation matrices, point cloud
[5] § Material and Methods › Human cohort and analysis › Fiber clustering ↔ dmri/src/plugin/gkg-dmri-plugin-functors/DwiIntraSubjectFiberClustering/DwiIntraSubjectFiberClusteringCommand.h, lines 1–72 · score 0.54 · fiber length ranges, right hemispheres, cerebellum, density, clustering, mask
[6] § Material and Methods › Human cohort and analysis ↔ mri-reconstruction/src/library/gkg-mri-reconstruction-io/GehcSignaPFileHeader.h, lines 934–993 · score 0.52 · spin echo, TE, pulsed, MRI
[7] § Material and Methods › Human cohort and analysis › Fiber clustering ↔ dmri/src/library/gkg-dmri-bundle-measure/BundleAffinityMatrix.h, lines 43–102 · score 0.52 · affinity matrix, centroids, distances, fiber, bundle

Paper

Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC

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The paper is loaded by your browser, with JavaScript: read it at doi.org or on Europe PMC.

The authors' code

C/C++ header · 128 lines · 5.1 KB · other · 2 matches

#ifndef _gkg_dmri_plugin_functors_DwiIntraSubjectFiberClustering_DwiIntraSubjectFiberClusteringCommand_h_
#define _gkg_dmri_plugin_functors_DwiIntraSubjectFiberClustering_DwiIntraSubjectFiberClusteringCommand_h_
#include <gkg-communication-command/Command.h>
#include <gkg-core-pattern/Creator.h>
#include <gkg-processing-coordinates/Vector3d.h>
#include <string>
#include <vector>
namespace gkg
{
class DwiIntraSubjectFiberClusteringCommand :
public Command,
public Creator2Arg< DwiIntraSubjectFiberClusteringCommand,
Command,
int32_t,
char** >,
public Creator1Arg< DwiIntraSubjectFiberClusteringCommand,
Command,
const Dictionary& >
{
public:
DwiIntraSubjectFiberClusteringCommand( int32_t argc,
char* argv[],
bool loadPlugin = false,
bool removeFirst = true );
DwiIntraSubjectFiberClusteringCommand(
const std::vector< std::string >& fileNameInputBundleMaps,
const std::string& fileNameBrainSubDivisionMask,
const std::string& fileNameTransform3dBrainSubDivisionMaskToBundle,
const std::string& outputDirectoryName,
float fiberResamplingStep,
int16_t rightHemisphereLabel,
int16_t leftHemisphereLabel,
int16_t cerebellumLabel,
int16_t corpusCallosumLabel,
int16_t discardedLabel,
float hemisphereThreshold,
float corpusCallosumThreshold,
float cerebellumThreshold,
float lowerLength,
float upperLength,
int32_t fiberLengthRangeCount,
const Vector3d< double >& parcellationResolution,
const int32_t& parcellationFiberCountThreshold,
const int32_t& parcelVoxelCount,
const int32_t& parcellationKMeansIterationCount,
const float& parcellationRatioOfDistanceVariance,
const float& connectivityMatrixThresholdRatio,
const int32_t& averageClusterSize,
const int32_t& isolatedClusterMinimumSize,
const int32_t& minimumClusterSize,
const float& minimumParcelSizeRatio,
const float& minimumPercentageOfFiberLengthBelongingToCluster,
bool performWatershed,
const int32_t& minimumFiberCountInCluster,
const float& extremityLength,
const float& extremityDensityMapThreshold,
bool intermediate,
const std::string& outputVolumeFormat,
const std::string& outputBundleFormat,
bool ascii,
bool verbose );
DwiIntraSubjectFiberClusteringCommand( const Dictionary& parameters );
virtual ~DwiIntraSubjectFiberClusteringCommand();
static std::string getStaticName();
protected:
friend class Creator2Arg< DwiIntraSubjectFiberClusteringCommand, Command,
int32_t, char** >;
friend class Creator1Arg< DwiIntraSubjectFiberClusteringCommand, Command,
const Dictionary& >;
void parse();
void execute(
const std::vector< std::string >& fileNameInputBundleMaps,
const std::string& fileNameBrainSubDivisionMask,
const std::string& fileNameTransform3dBrainSubDivisionMaskToBundle,
const std::string& outputDirectoryName,
float fiberResamplingStep,
int16_t rightHemisphereLabel,
int16_t leftHemisphereLabel,
int16_t cerebellumLabel,
int16_t corpusCallosumLabel,
int16_t discardedLabel,
float hemisphereThreshold,
float corpusCallosumThreshold,
float cerebellumThreshold,
float lowerLength,
float upperLength,
int32_t fiberLengthRangeCount,
const Vector3d< double >& parcellationResolution,
const int32_t& parcellationFiberCountThreshold,
const int32_t& parcelVoxelCount,
const int32_t& parcellationKMeansIterationCount,
const float& parcellationRatioOfDistanceVariance,
const float& connectivityMatrixThresholdRatio,
const int32_t& averageClusterSize,
const int32_t& isolatedClusterMinimumSize,
const int32_t& minimumClusterSize,
const float& minimumParcelSizeRatio,
const float& minimumPercentageOfFiberLengthBelongingToCluster,
bool performWatershed,
const int32_t& minimumFiberCountInCluster,
const float& extremityLength,
const float& extremityDensityMapThreshold,
bool intermediate,
const std::string& outputVolumeFormat,
const std::string& outputBundleFormat,
bool ascii,
bool verbose );
};
}
#endif

DwiIntraSubjectFiberClusteringCommand.h at commit d1669f8, under other · at the source

Overview

Authors: Maëlig Chauvel^1,2, Ivy Uszynski¹, Marco Pascucci¹, Yann Leprince³, Bastien Herlin¹, Denis Rivière¹, Jean-François Mangin¹, William D Hopkins⁴, Cyril Poupon¹

ORCID iDs: Maëlig Chauvel, Yann Leprince

Institutions: Centre National de la Recherche Scientifique (France); Commissariat à l'Énergie Atomique et aux Énergies Alternatives (France); CEA Paris-Saclay (France); Max Planck Institute for Human Cognitive and Brain Sciences (Germany); Building large instruments for neuroimaging: from population imaging to ultra-high magnetic fields (France); Inserm (France); Université Paris-Saclay (France); The University of Texas MD Anderson Cancer Center (United States)

Journal: Imaging neuroscience (Cambridge, Mass.), volume 4, article IMAG.a.1154

Dates: received 5 August 2025; accepted 19 January 2026; published online 11 March 2026

Type: Research article · Language: English

License: CC BY

Identifiers: DOI 10.1162/imag.a.1154 · PMID 41836920 · PMCID PMC12980544 · OpenAlex W7128622658

Open access: diamond, a free copy (OpenAlex)

Status: code verified

Categories: human (organism), non-human primate (organism), cognitive (subfield)

Methods: Statistics, Smoothing, state filtering, decompositions, Machine learning, fMRI & imaging

Keywords: white matter, chimpanzee, fiber clustering, isomap, neuro-evolution

Topic: Advanced Neuroimaging Techniques and Applications (Radiology, Nuclear Medicine and Imaging, Medicine), according to OpenAlex

Citations: cited by 1 paper (Europe PMC); 83 references in the paper

Abstract

Despite near-identical genetics, humans and chimpanzees display striking cognitive differences, thought to emerge from overall brain size variation and subtle divergences in brain connectivity. We present a comparative analysis of deep white matter bundle (DWMB) morphology in 39 in vivo chimpanzees and 39 humans, using diffusion MRI and a novel isomap-based shape analysis pipeline. After mapping DWMBs into a shared anatomical space via sulcus-informed diffeomorphic registration, we identified robust species-specific differences across key frontal tracts. We focused on four frontal tracts due to their roles in fronto-parietal and fronto-temporal connectivity supporting language, executive function, and socio-emotional processing, with the arcuate fasciculus serving as an internal control given its well-established species differences. Notably, the arcuate fasciculus in humans exhibited greater curvature, volume, and temporal extension—traits absent in chimpanzees and consistent with its role in language. The uncinate and inferior fronto-occipital fasciculus revealed distinct cross-species expansions and lateralization was observed for the frontal aslants and inferior fronto-occipital fasciculus in chimpanzees. These results provide the first high-dimensional morphological mapping of DWMBs across species, uncovering evolutionary adaptations in frontal connectivity and lateralization that likely underlie human-specific cognitive abilities.

Reproduced under the paper's license (CC BY), from the paper cited above.

Repositories

Its files are read in the Code ↔ Paper reader above, with 7 matches between paragraphs and lines of code.

framagit.org/cpoupon/gkg

License: other

State: the link answers, verified on 27 September 2026

Evidence: files inventoried

Commit: d1669f8d9da159e1372e18dcd9d8cb6da9d3660b, 3 September 2026

Languages: C/C++ (2575), Python (72), C++ (46), Shell (15), CUDA (1)

Size: 5,430 files, 2,709 scripts

Software Heritage: not archived

Found in: the text, “Chimpanzee cohort and analysis”

Holds: license file, tests

Not found: README, CITATION.cff, environment file, continuous integration, documentation

Tools: Matplotlib (1 file)

Availability: 2 checks, the latest on 27 September 2026: the link answers

27 September 2026: the link answers
27 September 2026: unreachable at the last attempt

2,000 files

anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/AGlobalTractographyObject.h, C/C++, 68 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/AnatomistViewer.h, C/C++, 59 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/BoundingBoxCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/GlobalTractographyCallbackIds.h, C/C++, 32 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/GlobalTractographyEvent.h, C/C++, 30 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/GlobalTractographyService.h, C/C++, 92 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/GlobalTractographyServiceThread.h, C/C++, 38 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/GlobalTractographyViewer.h, C/C++, 71 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/InitialSpinGlassConfigurationCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/AGlobalTractographyObject.h, C/C++, 73 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/ASpinGlassConnectionShader.h, C/C++, 18 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/ASpinGlassShader.h, C/C++, 17 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/AnatomicalPriorsCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/AnatomistViewer.h, C/C++, 67 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/DefaultInformationCallback.h, C/C++, 35 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/GlobalTractographyCallbackIds.h, C/C++, 43 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/GlobalTractographyEvent.h, C/C++, 32 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/GlobalTractographyOptimizationInformation.h, C/C++, 189 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/GlobalTractographyParameterIds.h, C/C++, 40 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/GlobalTractographyService.h, C/C++, 89 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/GlobalTractographyServiceThread.h, C/C++, 38 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/GlobalTractographyViewer.h, C/C++, 89 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/InitialSpinGlassConfigurationCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/NothingToDoInformationCallback.h, C/C++, 31 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/SpinGlassConnectionCreationCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/SpinGlassConnectionDeletionCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/SpinGlassConnectionInformationCallback.h, C/C++, 31 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/SpinGlassCreationCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/SpinGlassCreationInformationCallback.h, C/C++, 31 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/SpinGlassDeletionCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/SpinGlassDeletionInformationCallback.h, C/C++, 31 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/SpinGlassMoveCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/SpinGlassOptimalMoveInformationCallback.h, C/C++, 32 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/Old/SpinGlassRandomMoveInformationCallback.h, C/C++, 31 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/ResetCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/SpinGlassConnectionCreationCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/SpinGlassConnectionDeletionCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/SpinGlassCreationCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/SpinGlassDeletionCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/SpinGlassInformationCallback.h, C/C++, 33 lines
anatomist-plugin/src/command/GkgDwiGlobalTractographyViewer/SpinGlassMoveCallback.h, C/C++, 33 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-control/MouseAction.h, C/C++, 48 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-control/MouseControl.h, C/C++, 32 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-control/MouseEvent.h, C/C++, 47 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-io/AFiberReader.h, C/C++, 45 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-io/APdfFieldProcessingContext.h, C/C++, 44 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-io/APdfFieldReader.h, C/C++, 91 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-io/ATwoPoolModelFieldProcessingContext.h, C/C++, 46 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-io/ATwoPoolModelFieldReader.h, C/C++, 92 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-io/NormalsProcessingContext.h, C/C++, 52 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-io/TransformationsAndTranslationsAndNormalsProcessingContext.h, C/C++, 59 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-io/TransformationsAndTranslationsProcessingContext.h, C/C++, 53 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-module/GkgAnatomistPlugin.h, C/C++, 37 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/ABundleMapObject.h, C/C++, 195 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/AFiberObject.h, C/C++, 171 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/AFiberShader.h, C/C++, 18 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/AInteractiveBundleMapObject.h, C/C++, 122 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/AMedusaGeometryObject.h, C/C++, 121 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/AOdfFieldObject.h, C/C++, 169 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/APdfFieldObject.h, C/C++, 175 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/APointCloudFieldObject.h, C/C++, 145 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/APointCloudObject.h, C/C++, 93 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/AQThreadTestObject.h, C/C++, 149 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/ARealTimeFiberObject.h, C/C++, 158 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/ARealTimeOdfFieldObject.h, C/C++, 114 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/ATwoPoolModelFieldObject.h, C/C++, 169 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/AnatomistVolume.h, C/C++, 32 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/NewAInteractiveBundleMapObject.h, C/C++, 354 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-objects/VertexShader.h, C/C++, 25 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-rendering-options/ABundleMapRenderingOptionsWidget.h, C/C++, 136 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-rendering-options/AFiberRenderingOptionsWidget.h, C/C++, 110 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-rendering-options/AInteractiveBundleMapRenderingOptionsWidget.h, C/C++, 108 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-rendering-options/AMedusaGeometryObjectRenderingOptionsWidget.h, C/C++, 109 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-rendering-options/AOdfFieldRenderingOptionsWidget.h, C/C++, 85 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-rendering-options/APdfFieldRenderingOptionsWidget.h, C/C++, 99 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-rendering-options/APointCloudFieldObjectRenderingOptionsWidget.h, C/C++, 89 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-rendering-options/APointCloudObjectRenderingOptionsWidget.h, C/C++, 83 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-rendering-options/ATwoPoolModelFieldRenderingOptionsWidget.h, C/C++, 86 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-rendering-options/NewAInteractiveBundleMapRenderingOptionsWidget.h, C/C++, 188 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-rendering-options/OrientationCountSpinBox.h, C/C++, 43 lines
anatomist-plugin/src/library/gkg-anatomist-plugin-server/AnatomistServer.h, C/C++, 170 lines
communication/src/library/gkg-communication-X11/X11CommunicationImplementationFactory.h, C/C++, 83 lines
communication/src/library/gkg-communication-X11/X11ConfigurationInfoImplementation.h, C/C++, 37 lines
communication/src/library/gkg-communication-X11/X11DirectoryImplementation.h, C/C++, 110 lines
communication/src/library/gkg-communication-X11/X11FileImplementation.h, C/C++, 70 lines
communication/src/library/gkg-communication-X11/X11MutexImplementation.h, C/C++, 43 lines
communication/src/library/gkg-communication-X11/X11PluginLoaderImplementation.h, C/C++, 38 lines
communication/src/library/gkg-communication-X11/X11SemaphoreImplementation.h, C/C++, 41 lines
communication/src/library/gkg-communication-X11/X11SystemInfoImplementation.h, C/C++, 49 lines
communication/src/library/gkg-communication-X11/X11ThreadConditionImplementation.h, C/C++, 44 lines
communication/src/library/gkg-communication-X11/X11ThreadImplementation.h, C/C++, 54 lines
communication/src/library/gkg-communication-algorithm/Algorithm.h, C/C++, 49 lines
communication/src/library/gkg-communication-algorithm/AlgorithmConnector.h, C/C++, 113 lines
communication/src/library/gkg-communication-algorithm/AlgorithmConnector_i.h, C/C++, 101 lines
communication/src/library/gkg-communication-algorithm/AlgorithmParameter.h, C/C++, 79 lines
communication/src/library/gkg-communication-algorithm/AlgorithmParameter_i.h, C/C++, 76 lines
communication/src/library/gkg-communication-algorithm/Binarizer.h, C/C++, 42 lines
communication/src/library/gkg-communication-algorithm/Binarizer_i.h, C/C++, 109 lines
communication/src/library/gkg-communication-algorithm/TypedAlgorithmParameter.h, C/C++, 44 lines
communication/src/library/gkg-communication-algorithm/TypedAlgorithmParameter_i.h, C/C++, 80 lines
communication/src/library/gkg-communication-algorithm/VectorReader.h, C/C++, 40 lines
communication/src/library/gkg-communication-algorithm/VectorReader_i.h, C/C++, 81 lines
communication/src/library/gkg-communication-algorithm/VectorWriter.h, C/C++, 40 lines
communication/src/library/gkg-communication-algorithm/VectorWriter_i.h, C/C++, 74 lines
communication/src/library/gkg-communication-command/Command.h, C/C++, 154 lines
communication/src/library/gkg-communication-command/CommandFactory.h, C/C++, 119 lines
communication/src/library/gkg-communication-core/CommunicationImplementationFactory.h, C/C++, 104 lines
communication/src/library/gkg-communication-cuda/CudaDevices.h, C/C++, 59 lines
communication/src/library/gkg-communication-cuda/CudaProperties.h, C/C++, 52 lines
communication/src/library/gkg-communication-dispatcher/Dispatcher.h, C/C++, 94 lines
communication/src/library/gkg-communication-dispatcher/IOCallback.h, C/C++, 127 lines
communication/src/library/gkg-communication-dispatcher/IOHandler.h, C/C++, 39 lines
communication/src/library/gkg-communication-getopt/Application.h, C/C++, 44 lines
communication/src/library/gkg-communication-getopt/Option.h, C/C++, 49 lines
communication/src/library/gkg-communication-getopt/OptionParser.h, C/C++, 48 lines
communication/src/library/gkg-communication-getopt/OptionParser_i.h, C/C++, 44 lines
communication/src/library/gkg-communication-getopt/SeriesOption.h, C/C++, 46 lines
communication/src/library/gkg-communication-getopt/SeriesOption_i.h, C/C++, 128 lines
communication/src/library/gkg-communication-getopt/SingleOption.h, C/C++, 44 lines
communication/src/library/gkg-communication-getopt/SingleOption_i.h, C/C++, 174 lines
communication/src/library/gkg-communication-log/HistoryWriter.h, C/C++, 52 lines
communication/src/library/gkg-communication-log/HistoryWriter_i.h, C/C++, 59 lines
communication/src/library/gkg-communication-log/InfoWriter.h, C/C++, 40 lines
communication/src/library/gkg-communication-log/LogWriter.h, C/C++, 33 lines
communication/src/library/gkg-communication-plugin/Plugin.h, C/C++, 33 lines
communication/src/library/gkg-communication-plugin/PluginLoader.h, C/C++, 47 lines
communication/src/library/gkg-communication-plugin/PluginLoaderImplementation.h, C/C++, 51 lines
communication/src/library/gkg-communication-plugin/PluginManager.h, C/C++, 46 lines
communication/src/library/gkg-communication-rpc/RpcCallback.h, C/C++, 38 lines
communication/src/library/gkg-communication-rpc/RpcCommand.h, C/C++, 37 lines
communication/src/library/gkg-communication-rpc/RpcCommandReader.h, C/C++, 56 lines
communication/src/library/gkg-communication-rpc/RpcCommandWriter.h, C/C++, 44 lines
communication/src/library/gkg-communication-rpc/RpcEpilog.h, C/C++, 46 lines
communication/src/library/gkg-communication-rpc/RpcProlog.h, C/C++, 46 lines
communication/src/library/gkg-communication-rpc/RpcReader.h, C/C++, 47 lines
communication/src/library/gkg-communication-rpc/RpcWriter.h, C/C++, 53 lines
communication/src/library/gkg-communication-socket/IOStream.h, C/C++, 34 lines
communication/src/library/gkg-communication-socket/IOStreamBase.h, C/C++, 51 lines
communication/src/library/gkg-communication-socket/IStream.h, C/C++, 50 lines
communication/src/library/gkg-communication-socket/OStream.h, C/C++, 52 lines
communication/src/library/gkg-communication-socket/SocketBuffer.h, C/C++, 63 lines
communication/src/library/gkg-communication-socket/SocketFrame.h, C/C++, 38 lines
communication/src/library/gkg-communication-socket/SocketFrameWriter.h, C/C++, 37 lines
communication/src/library/gkg-communication-socket/SocketHeader.h, C/C++, 55 lines
communication/src/library/gkg-communication-socket/SocketPeer.h, C/C++, 65 lines
communication/src/library/gkg-communication-socket/SocketReader.h, C/C++, 67 lines
communication/src/library/gkg-communication-socket/SocketRegistry.h, C/C++, 32 lines
communication/src/library/gkg-communication-socket/SocketService.h, C/C++, 64 lines
communication/src/library/gkg-communication-socket/SocketStream.h, C/C++, 49 lines
communication/src/library/gkg-communication-socket/SocketTransferBufferFrame.h, C/C++, 36 lines
communication/src/library/gkg-communication-socket/SocketTransferBufferFrame_i.h, C/C++, 49 lines
communication/src/library/gkg-communication-socket/SocketWriter.h, C/C++, 64 lines
communication/src/library/gkg-communication-sysinfo/ConfigurationInfo.h, C/C++, 97 lines
communication/src/library/gkg-communication-sysinfo/ConfigurationInfoImplementation.h, C/C++, 47 lines
communication/src/library/gkg-communication-sysinfo/Directory.h, C/C++, 77 lines
communication/src/library/gkg-communication-sysinfo/DirectoryImplementation.h, C/C++, 54 lines
communication/src/library/gkg-communication-sysinfo/File.h, C/C++, 73 lines
communication/src/library/gkg-communication-sysinfo/FileFinder.h, C/C++, 36 lines
communication/src/library/gkg-communication-sysinfo/FileImplementation.h, C/C++, 75 lines
communication/src/library/gkg-communication-sysinfo/KeyboardHit.h, C/C++, 18 lines
communication/src/library/gkg-communication-sysinfo/SystemInfo.h, C/C++, 68 lines
communication/src/library/gkg-communication-sysinfo/SystemInfoImplementation.h, C/C++, 63 lines
communication/src/library/gkg-communication-sysinfo/Timer.h, C/C++, 50 lines
communication/src/library/gkg-communication-tcpip/Host.h, C/C++, 29 lines
communication/src/library/gkg-communication-tcpip/HostPort.h, C/C++, 46 lines
communication/src/library/gkg-communication-thread/ExclusiveContext.h, C/C++, 33 lines
communication/src/library/gkg-communication-thread/LoopContext.h, C/C++, 43 lines
communication/src/library/gkg-communication-thread/LoopHelper.h, C/C++, 36 lines
communication/src/library/gkg-communication-thread/LoopTask.h, C/C++, 36 lines
communication/src/library/gkg-communication-thread/LoopThread.h, C/C++, 36 lines
communication/src/library/gkg-communication-thread/Mutex.h, C/C++, 43 lines
communication/src/library/gkg-communication-thread/MutexImplementation.h, C/C++, 39 lines
communication/src/library/gkg-communication-thread/PoolThread.h, C/C++, 34 lines
communication/src/library/gkg-communication-thread/Semaphore.h, C/C++, 41 lines
communication/src/library/gkg-communication-thread/SemaphoreImplementation.h, C/C++, 42 lines
communication/src/library/gkg-communication-thread/Task.h, C/C++, 35 lines
communication/src/library/gkg-communication-thread/Thread.h, C/C++, 69 lines
communication/src/library/gkg-communication-thread/ThreadCancel.h, C/C++, 26 lines
communication/src/library/gkg-communication-thread/ThreadCondition.h, C/C++, 43 lines
communication/src/library/gkg-communication-thread/ThreadConditionImplementation.h, C/C++, 47 lines
communication/src/library/gkg-communication-thread/ThreadGauge.h, C/C++, 30 lines
communication/src/library/gkg-communication-thread/ThreadImplementation.h, C/C++, 66 lines
communication/src/library/gkg-communication-thread/ThreadPool.h, C/C++, 61 lines
communication/src/library/gkg-communication-thread/ThreadPoolHelper.h, C/C++, 41 lines
communication/src/library/gkg-communication-thread/ThreadedLoop.h, C/C++, 60 lines
communication/src/library/gkg-communication-thread/ThreadedLoopHelper.h, C/C++, 41 lines
communication/src/plugin/gkg-communication-plugin-functors/CudaDeviceList/CudaDeviceListCommand.h, C/C++, 52 lines
communication/src/test/GkgTestDetachedThread01/DetachedThread.h, C/C++, 24 lines
communication/test/GkgTestPythonModule/GkgTestPythonModule.py, Python, 34 lines
core/src/library/gkg-core-cppext/CUniStd.h, C/C++, 16 lines
core/src/library/gkg-core-cppext/FStream.h, C/C++, 115 lines
core/src/library/gkg-core-cppext/HashMap.h, C/C++, 122 lines
core/src/library/gkg-core-cppext/IosBase.h, C/C++, 41 lines
core/src/library/gkg-core-cppext/LargeFileStream.h, C/C++, 128 lines
core/src/library/gkg-core-cppext/LargeFileStream_i.h, C/C++, 86 lines
core/src/library/gkg-core-cppext/Limits.h, C/C++, 1,962 lines
core/src/library/gkg-core-cppext/NetInetIn.h, C/C++, 35 lines
core/src/library/gkg-core-cppext/OStream.h, C/C++, 177 lines
core/src/library/gkg-core-cppext/StdInt.h, C/C++, 158 lines
core/src/library/gkg-core-cppext/StringStream.h, C/C++, 30 lines
core/src/library/gkg-core-cppext/SysParam.h, C/C++, 24 lines
core/src/library/gkg-core-cppext/SysSelect.h, C/C++, 27 lines
core/src/library/gkg-core-cppext/SysTime.h, C/C++, 35 lines
core/src/library/gkg-core-cppext/SysWait.h, C/C++, 16 lines
core/src/library/gkg-core-cppext/UncommentCounterInputFileStream.h, C/C++, 146 lines
core/src/library/gkg-core-exception/BadMediumException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/BadOptionException.h, C/C++, 26 lines
core/src/library/gkg-core-exception/BadParameterCountException.h, C/C++, 28 lines
core/src/library/gkg-core-exception/CorruptStreamException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/DataTypeFormatException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/DiskFullException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/EofException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/ErrnoException.h, C/C++, 38 lines
core/src/library/gkg-core-exception/Exception.h, C/C++, 49 lines
core/src/library/gkg-core-exception/FileException.h, C/C++, 35 lines
core/src/library/gkg-core-exception/FileNotFoundException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/FormatException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/FormatMismatchException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/HelpOptionException.h, C/C++, 26 lines
core/src/library/gkg-core-exception/IOException.h, C/C++, 47 lines
core/src/library/gkg-core-exception/InconsistentHeaderException.h, C/C++, 36 lines
core/src/library/gkg-core-exception/InvalidBooleanException.h, C/C++, 27 lines
core/src/library/gkg-core-exception/InvalidFormatException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/InvalidIntegerException.h, C/C++, 28 lines
core/src/library/gkg-core-exception/InvalidNumberException.h, C/C++, 28 lines
core/src/library/gkg-core-exception/InvalidPositiveIntegerException.h, C/C++, 28 lines
core/src/library/gkg-core-exception/IsDirException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/ItemTypeException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/MissingOptionException.h, C/C++, 26 lines
core/src/library/gkg-core-exception/NoDirException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/NoPartialReaderException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/NoPartialWriterException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/NoReaderException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/NoWriterException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/NonReversibleMatrixException.h, C/C++, 26 lines
core/src/library/gkg-core-exception/NotOpenException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/ObjectTypeException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/OpenException.h, C/C++, 28 lines
core/src/library/gkg-core-exception/OutOfRangeException.h, C/C++, 27 lines
core/src/library/gkg-core-exception/ParseException.h, C/C++, 50 lines
core/src/library/gkg-core-exception/PermissionException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/PolygonSizeException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/QuotaExceededException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/RankTypeException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/ReadWriteException.h, C/C++, 28 lines
core/src/library/gkg-core-exception/StreamFailException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/StreamStateException.h, C/C++, 28 lines
core/src/library/gkg-core-exception/SyntaxCheckException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/TooManyDescriptorsException.h, C/C++, 29 lines
core/src/library/gkg-core-exception/UnexpectedOptionException.h, C/C++, 26 lines
core/src/library/gkg-core-exception/UnexpectedOptionValueException.h, C/C++, 27 lines
core/src/library/gkg-core-exception/WrongFormatException.h, C/C++, 29 lines
core/src/library/gkg-core-io/BaseObjectReader.h, C/C++, 59 lines
core/src/library/gkg-core-io/BaseObjectWriter.h, C/C++, 58 lines
core/src/library/gkg-core-io/BufferFile.h, C/C++, 63 lines
core/src/library/gkg-core-io/ByteOrder.h, C/C++, 51 lines
core/src/library/gkg-core-io/DefaultAsciiItemReader.h, C/C++, 38 lines
core/src/library/gkg-core-io/DefaultAsciiItemReaderOfStdList.h, C/C++, 42 lines
core/src/library/gkg-core-io/DefaultAsciiItemReaderOfStdList_i.h, C/C++, 99 lines
core/src/library/gkg-core-io/DefaultAsciiItemReaderOfStdVector.h, C/C++, 42 lines
core/src/library/gkg-core-io/DefaultAsciiItemReaderOfStdVector_i.h, C/C++, 99 lines
core/src/library/gkg-core-io/DefaultAsciiItemReader_i.h, C/C++, 212 lines
core/src/library/gkg-core-io/DefaultAsciiItemWriter.h, C/C++, 40 lines
core/src/library/gkg-core-io/DefaultAsciiItemWriterOfStdList.h, C/C++, 42 lines
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core/src/library/gkg-core-io/DefaultAsciiItemWriterOfStdVector.h, C/C++, 42 lines
core/src/library/gkg-core-io/DefaultAsciiItemWriterOfStdVector_i.h, C/C++, 102 lines
core/src/library/gkg-core-io/DefaultAsciiItemWriter_i.h, C/C++, 148 lines
core/src/library/gkg-core-io/DefaultBSwapItemReader.h, C/C++, 38 lines
core/src/library/gkg-core-io/DefaultBSwapItemReaderOfStdList.h, C/C++, 42 lines
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core/src/library/gkg-core-io/DefaultBSwapItemReaderOfStdVector.h, C/C++, 42 lines
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core/src/library/gkg-core-io/DefaultBSwapItemReader_i.h, C/C++, 502 lines
core/src/library/gkg-core-io/DefaultBSwapItemWriter.h, C/C++, 40 lines
core/src/library/gkg-core-io/DefaultBSwapItemWriterOfStdList.h, C/C++, 42 lines
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core/src/library/gkg-core-io/DefaultBSwapItemWriterOfStdVector.h, C/C++, 42 lines
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core/src/library/gkg-core-io/DefaultBSwapItemWriter_i.h, C/C++, 525 lines
core/src/library/gkg-core-io/DefaultBinaryItemReader.h, C/C++, 38 lines
core/src/library/gkg-core-io/DefaultBinaryItemReaderOfStdList.h, C/C++, 42 lines
core/src/library/gkg-core-io/DefaultBinaryItemReaderOfStdList_i.h, C/C++, 99 lines
core/src/library/gkg-core-io/DefaultBinaryItemReaderOfStdVector.h, C/C++, 42 lines
core/src/library/gkg-core-io/DefaultBinaryItemReaderOfStdVector_i.h, C/C++, 99 lines
core/src/library/gkg-core-io/DefaultBinaryItemReader_i.h, C/C++, 152 lines
core/src/library/gkg-core-io/DefaultBinaryItemWriter.h, C/C++, 40 lines
core/src/library/gkg-core-io/DefaultBinaryItemWriterOfStdList.h, C/C++, 42 lines
core/src/library/gkg-core-io/DefaultBinaryItemWriterOfStdList_i.h, C/C++, 102 lines
core/src/library/gkg-core-io/DefaultBinaryItemWriterOfStdVector.h, C/C++, 42 lines
core/src/library/gkg-core-io/DefaultBinaryItemWriterOfStdVector_i.h, C/C++, 102 lines
core/src/library/gkg-core-io/DefaultBinaryItemWriter_i.h, C/C++, 138 lines
core/src/library/gkg-core-io/DefaultItemIOFactory.h, C/C++, 37 lines
core/src/library/gkg-core-io/DefaultItemIOFactoryOfStdList.h, C/C++, 37 lines
core/src/library/gkg-core-io/DefaultItemIOFactoryOfStdList_i.h, C/C++, 87 lines
core/src/library/gkg-core-io/DefaultItemIOFactoryOfStdVector.h, C/C++, 37 lines
core/src/library/gkg-core-io/DefaultItemIOFactoryOfStdVector_i.h, C/C++, 87 lines
core/src/library/gkg-core-io/DefaultItemIOFactory_i.h, C/C++, 85 lines
core/src/library/gkg-core-io/DicomDump.h, C/C++, 38 lines
core/src/library/gkg-core-io/DicomDumpImplementation.h, C/C++, 39 lines
core/src/library/gkg-core-io/DicomFile.h, C/C++, 45 lines
core/src/library/gkg-core-io/DicomFileImplementation.h, C/C++, 47 lines
core/src/library/gkg-core-io/DicomImplementationFactory.h, C/C++, 70 lines
core/src/library/gkg-core-io/DicomSelector.h, C/C++, 50 lines
core/src/library/gkg-core-io/DicomServiceClassProvider.h, C/C++, 81 lines
core/src/library/gkg-core-io/DicomServiceClassProviderImplementation.h, C/C++, 70 lines
core/src/library/gkg-core-io/DicomServiceClassUser.h, C/C++, 85 lines
core/src/library/gkg-core-io/DicomServiceClassUserImplementation.h, C/C++, 70 lines
core/src/library/gkg-core-io/DicomTagInfo.h, C/C++, 42 lines
core/src/library/gkg-core-io/DiskFormat.h, C/C++, 46 lines
core/src/library/gkg-core-io/DiskFormatAnalyzer.h, C/C++, 84 lines
core/src/library/gkg-core-io/DiskFormatFactory.h, C/C++, 46 lines
core/src/library/gkg-core-io/DiskFormatFactory_i.h, C/C++, 97 lines
core/src/library/gkg-core-io/Eraser.h, C/C++, 42 lines
core/src/library/gkg-core-io/IOMode.h, C/C++, 44 lines
core/src/library/gkg-core-io/Indent.h, C/C++, 35 lines
core/src/library/gkg-core-io/InputBufferFile.h, C/C++, 31 lines
core/src/library/gkg-core-io/ItemReader.h, C/C++, 47 lines
core/src/library/gkg-core-io/ItemReader_i.h, C/C++, 76 lines
core/src/library/gkg-core-io/ItemWriter.h, C/C++, 45 lines
core/src/library/gkg-core-io/ItemWriter_i.h, C/C++, 55 lines
core/src/library/gkg-core-io/Reader.h, C/C++, 58 lines
core/src/library/gkg-core-io/Reader_i.h, C/C++, 491 lines
core/src/library/gkg-core-io/StdListAsciiItemReader.h, C/C++, 42 lines
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core/src/library/gkg-core-io/StdListAsciiItemWriter.h, C/C++, 42 lines
core/src/library/gkg-core-io/StdListAsciiItemWriter_i.h, C/C++, 124 lines
core/src/library/gkg-core-io/StdListBSwapItemReader.h, C/C++, 42 lines
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core/src/library/gkg-core-io/StdListItemIOFactory.h, C/C++, 40 lines
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core/src/library/gkg-core-io/StdVectorAsciiItemReader.h, C/C++, 42 lines
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core/src/library/gkg-core-io/StdVectorBSwapItemReader.h, C/C++, 42 lines
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core/src/library/gkg-core-io/StdVectorBinaryItemReader.h, C/C++, 42 lines
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core/src/library/gkg-core-io/TextFileLineCount.h, C/C++, 23 lines
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core/src/library/gkg-core-io/Writer.h, C/C++, 59 lines
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core/src/library/gkg-core-object/BaseObject.h, C/C++, 84 lines
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core/src/library/gkg-core-object/BinaryHeader.h, C/C++, 64 lines
core/src/library/gkg-core-object/Dictionary.h, C/C++, 25 lines
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core/src/library/gkg-core-object/GenericObject_i.h, C/C++, 33 lines
core/src/library/gkg-core-object/HeaderedObject.h, C/C++, 60 lines
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core/src/library/gkg-core-object/RegionInformation.h, C/C++, 26 lines
core/src/library/gkg-core-object/Syntax.h, C/C++, 35 lines
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core/src/library/gkg-core-pattern/Convertion.h, C/C++, 48 lines
core/src/library/gkg-core-pattern/Creator.h, C/C++, 76 lines
core/src/library/gkg-core-pattern/CreatorUniquePtr.h, C/C++, 80 lines
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core/src/library/gkg-core-pattern/RCPointer.h, C/C++, 931 lines
core/src/library/gkg-core-pattern/Singleton.h, C/C++, 44 lines
core/src/library/gkg-core-pattern/SingletonAccessor.h, C/C++, 31 lines
core/src/library/gkg-core-pattern/StdVectorCompare.h, C/C++, 91 lines
core/src/library/gkg-core-pattern/UniqueIdentityGenerator.h, C/C++, 33 lines
core/src/library/gkg-core-string/RegularExpression.h, C/C++, 66 lines
core/src/library/gkg-core-string/StringSplitter.h, C/C++, 41 lines
cortex/src/library/gkg-cortex-io/ForceHardLinkWithCortexLibrary.h, C/C++, 21 lines
cortex/src/plugin/gkg-cortex-plugin-functors/B1MapGenerator/B1MapGeneratorCommand.h, C/C++, 69 lines
cortex/src/plugin/gkg-cortex-plugin-functors/B1MapGenerator/B1MapGeneratorGauge.h, C/C++, 36 lines
cortex/src/plugin/gkg-cortex-plugin-functors/B1MapGenerator/B1MapGeneratorLoopContext.h, C/C++, 62 lines
cortex/src/plugin/gkg-cortex-plugin-functors/MultiContrastCortexLayerClustering/MultiContrastCortexLayerClusteringCommand.h, C/C++, 78 lines
cortex/src/plugin/gkg-cortex-plugin-functors/MultiContrastCortexLayerMapper/MultiContrastCortexLayerMapperCommand.h, C/C++, 95 lines
dartel/src/library/gkg-dartel-bundle/DartelBundleTransformation.h, C/C++, 38 lines
dartel/src/library/gkg-dartel-core/DartelCompositionContext.h, C/C++, 39 lines
dartel/src/library/gkg-dartel-core/DartelExponentiation.h, C/C++, 51 lines
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dartel/src/library/gkg-dartel-mesh/DartelMeshTransformation.h, C/C++, 38 lines
dartel/src/library/gkg-dartel-volume/DartelVolumeTransformation.h, C/C++, 47 lines
dartel/src/plugin/gkg-dartel-plugin-functors/DartelBundleCreateWarp/DartelBundleCreateWarpCommand.h, C/C++, 69 lines
dartel/src/plugin/gkg-dartel-plugin-functors/DartelCreateWarp/DartelCreateWarpCommand.h, C/C++, 67 lines
dartel/src/plugin/gkg-dartel-plugin-functors/DartelFlowFieldToVectorField/DartelFlowFieldToVectorFieldCommand.h, C/C++, 61 lines
dartel/src/plugin/gkg-dartel-plugin-functors/DartelMeshCreateWarp/DartelMeshCreateWarpCommand.h, C/C++, 69 lines
deep-nuclei/src/library/gkg-deep-nuclei-deepnuclei/BackgroundNormalizedSquareCenteredPhiFunction.h, C/C++, 39 lines
deep-nuclei/src/library/gkg-deep-nuclei-deepnuclei/CsfNormalizedSquareCenteredPhiFunction.h, C/C++, 36 lines
deep-nuclei/src/library/gkg-deep-nuclei-deepnuclei/LabelDependentTransform3dRelaxationFunction.h, C/C++, 45 lines
deep-nuclei/src/library/gkg-deep-nuclei-deepnuclei/LabelDependentTransform3dRelaxationFunction_i.h, C/C++, 65 lines
deep-nuclei/src/library/gkg-deep-nuclei-deepnuclei/LabelIndependentTransform3dRelaxationFunction.h, C/C++, 43 lines
deep-nuclei/src/library/gkg-deep-nuclei-deepnuclei/LabelIndependentTransform3dRelaxationFunction_i.h, C/C++, 60 lines
deep-nuclei/src/library/gkg-deep-nuclei-midsagittalplane/MidSagittalPlane.h, C/C++, 51 lines
deep-nuclei/src/library/gkg-deep-nuclei-midsagittalplane/MidSagittalPlaneContext.h, C/C++, 55 lines
deep-nuclei/src/library/gkg-deep-nuclei-midsagittalplane/MidSagittalPlaneContext_i.h, C/C++, 103 lines
deep-nuclei/src/library/gkg-deep-nuclei-midsagittalplane/MidSagittalPlaneFunction.h, C/C++, 42 lines
deep-nuclei/src/library/gkg-deep-nuclei-midsagittalplane/MidSagittalPlane_i.h, C/C++, 395 lines
deep-nuclei/src/library/gkg-deep-nuclei-midsagittalsurface/MidSagittalSurface.h, C/C++, 52 lines
deep-nuclei/src/library/gkg-deep-nuclei-midsagittalsurface/MidSagittalSurfaceContext2d.h, C/C++, 42 lines
deep-nuclei/src/library/gkg-deep-nuclei-midsagittalsurface/MidSagittalSurfaceContext2d_i.h, C/C++, 74 lines
deep-nuclei/src/library/gkg-deep-nuclei-midsagittalsurface/MidSagittalSurfaceContext3d.h, C/C++, 42 lines
deep-nuclei/src/library/gkg-deep-nuclei-midsagittalsurface/MidSagittalSurfaceContext3d_i.h, C/C++, 74 lines
deep-nuclei/src/library/gkg-deep-nuclei-midsagittalsurface/MidSagittalSurface_i.h, C/C++, 353 lines
deep-nuclei/src/plugin/gkg-deep-nuclei-plugin-functors/DeepNucleiSegmentation/DeepNucleiSegmentationCommand.h, C/C++, 84 lines
deep-nuclei/src/plugin/gkg-deep-nuclei-plugin-functors/MaxOccurrenceAtlas/MaxOccurrenceAtlasCommand.h, C/C++, 62 lines
deep-nuclei/src/plugin/gkg-deep-nuclei-plugin-functors/MidSagittalPlane/MidSagittalPlaneCommand.h, C/C++, 71 lines
deep-nuclei/src/plugin/gkg-deep-nuclei-plugin-functors/MidSagittalSurface/MidSagittalSurfaceCommand.h, C/C++, 73 lines
deep-nuclei/src/plugin/gkg-deep-nuclei-plugin-functors/OccurrenceAtlas/OccurrenceAtlasCommand.h, C/C++, 68 lines
deep-nuclei/src/plugin/gkg-deep-nuclei-plugin-functors/ProbabilisticAtlas/ProbabilisticAtlasCommand.h, C/C++, 68 lines
dmri/scripts/DisplayConnectivityMatrix/GkgDisplayConnectivityMatrix.py, Python, 293 lines
dmri/scripts/GetConnectivityMatrixValue/GkgGetConnectivityMatrixValue.py, Python, 133 lines
dmri/src/library/gkg-dmri-bundle-distance/BundleDistanceFunctor.h, C/C++, 33 lines
dmri/src/library/gkg-dmri-bundle-distance/BundleDistanceFunctorFactory.h, C/C++, 57 lines
dmri/src/library/gkg-dmri-bundle-distance/ExtremityBasedDistanceFunctor.h, C/C++, 47 lines
dmri/src/library/gkg-dmri-bundle-distance/SumOfSymmetricSumOfClosestPointDistanceFunctor.h, C/C++, 47 lines
dmri/src/library/gkg-dmri-bundle-measure/BundleAffinityMatrix.h, C/C++, 151 lines, 1 match
dmri/src/library/gkg-dmri-bundle-measure/BundleDensityMap.h, C/C++, 38 lines
dmri/src/library/gkg-dmri-bundle-measure/BundleFiberCount.h, C/C++, 40 lines
dmri/src/library/gkg-dmri-bundle-measure/BundleFiberLengthHistogram.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-bundle-measure/BundleFiberLengthStatistics.h, C/C++, 55 lines
dmri/src/library/gkg-dmri-bundle-measure/BundleFiberTortuosityStatistics.h, C/C++, 55 lines
dmri/src/library/gkg-dmri-bundle-measure/BundleFromVolumeProfileAlongCentroid.h, C/C++, 86 lines
dmri/src/library/gkg-dmri-bundle-measure/BundleFromVolumeStatistics.h, C/C++, 74 lines
dmri/src/library/gkg-dmri-bundle-measure/BundleFromVolumeStatisticsAlongCentroid.h, C/C++, 95 lines
dmri/src/library/gkg-dmri-bundle-measure/BundleMeasure.h, C/C++, 35 lines
dmri/src/library/gkg-dmri-bundle-measure/BundleMeasureChecker.h, C/C++, 65 lines
dmri/src/library/gkg-dmri-bundle-measure/BundleMeasure_i.h, C/C++, 23 lines
dmri/src/library/gkg-dmri-bundle-measure/BundleSulciLabelling.h, C/C++, 182 lines
dmri/src/library/gkg-dmri-bundle-measure/BundleTerminationAffinityMatrix.h, C/C++, 62 lines
dmri/src/library/gkg-dmri-bundle-selector/BundleSelector.h, C/C++, 33 lines
dmri/src/library/gkg-dmri-bundle-selector/MeasureBasedBundleSelector.h, C/C++, 41 lines
dmri/src/library/gkg-dmri-bundle-selector/MeasureBasedBundleSelector_i.h, C/C++, 52 lines
dmri/src/library/gkg-dmri-bundle-selector/RoiBasedBundleSelector.h, C/C++, 57 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperator.h, C/C++, 48 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorBetweenRoiPairSelection.h, C/C++, 113 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorBetweenRoiPairSelection_i.h, C/C++, 881 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorBetweenRoiSelection.h, C/C++, 93 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorBetweenRoiSelection_i.h, C/C++, 749 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorBoundingBoxIntersectionWithRandomSelection.h, C/C++, 80 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorBoundingBoxIntersectionWithRandomSelection_i.h, C/C++, 448 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorChangeLabels.h, C/C++, 71 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorChangeLabels_i.h, C/C++, 367 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorClusteringSelectLabels.h, C/C++, 77 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorClusteringSelectLabels_i.h, C/C++, 519 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorComputeCentroids.h, C/C++, 101 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorComputeCentroids_i.h, C/C++, 806 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorCutExtremities.h, C/C++, 73 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorCutExtremities_i.h, C/C++, 287 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorDiscardLabels.h, C/C++, 71 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorDiscardLabels_i.h, C/C++, 344 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorFactory.h, C/C++, 66 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorFiberCountFilter.h, C/C++, 71 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorFiberCountFilter_i.h, C/C++, 284 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorFlipper3d.h, C/C++, 72 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorFlipper3d_i.h, C/C++, 772 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorFusion.h, C/C++, 66 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorFusion_i.h, C/C++, 235 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorIntraSubjectClusterLabelSimplifier.h, C/C++, 80 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorIntraSubjectClusterLabelSimplifier_i.h, C/C++, 461 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorLengthNormalization.h, C/C++, 79 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorLengthNormalization_i.h, C/C++, 348 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorLengthSelection.h, C/C++, 78 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorLengthSelection_i.h, C/C++, 318 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorMaskIntersection.h, C/C++, 90 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorMaskIntersection_i.h, C/C++, 443 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorMergeLabels.h, C/C++, 70 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorMergeLabels_i.h, C/C++, 325 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorMidSagittalPlaneSymmetrizer.h, C/C++, 76 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorMidSagittalPlaneSymmetrizer_i.h, C/C++, 355 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorOrderExtremities.h, C/C++, 73 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorOrderExtremities_i.h, C/C++, 315 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorRandomSelection.h, C/C++, 73 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorRandomSelection_i.h, C/C++, 290 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorRemoveDuplicates.h, C/C++, 83 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorRemoveDuplicates_i.h, C/C++, 368 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorResampler.h, C/C++, 121 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorResampler_i.h, C/C++, 547 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorReverseFibers.h, C/C++, 71 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorReverseFibers_i.h, C/C++, 266 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorRoiBasedSelection.h, C/C++, 146 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorRoiBasedSelection_i.h, C/C++, 567 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorSelectLabels.h, C/C++, 76 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorSelectLabels_i.h, C/C++, 441 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorSplitLabels.h, C/C++, 73 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorSplitLabels_i.h, C/C++, 388 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorTransform3d.h, C/C++, 77 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperatorTransform3d_i.h, C/C++, 497 lines
dmri/src/library/gkg-dmri-bundlemap-operator/BundleMapOperator_i.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-connectivity-matrix/ConnectivityMatrixFactory.h, C/C++, 68 lines
dmri/src/library/gkg-dmri-connectivity-matrix/ConnectivityMatrixFactory_i.h, C/C++, 301 lines
dmri/src/library/gkg-dmri-connectivity-matrix/ConnectivityMatrixFunctor.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-connectivity-matrix/ConnectivityMatrixFunctor_i.h, C/C++, 24 lines
dmri/src/library/gkg-dmri-connectivity-matrix/ConnectivityMatrixGauge.h, C/C++, 37 lines
dmri/src/library/gkg-dmri-connectivity-matrix/MeshAndTextureConnectivityMatrixFunctor.h, C/C++, 100 lines
dmri/src/library/gkg-dmri-connectivity-matrix/MeshAndTextureConnectivityMatrixFunctor_i.h, C/C++, 1,769 lines
dmri/src/library/gkg-dmri-connectivity-matrix/MeshAndTextureToMeshAndTextureConnectivityMatrixFunctor.h, C/C++, 67 lines
dmri/src/library/gkg-dmri-connectivity-matrix/MeshAndTextureToMeshAndTextureConnectivityMatrixFunctor_i.h, C/C++, 151 lines
dmri/src/library/gkg-dmri-connectivity-matrix/MeshToMeshAndTextureConnectivityMatrixFunctor.h, C/C++, 67 lines
dmri/src/library/gkg-dmri-connectivity-matrix/MeshToMeshAndTextureConnectivityMatrixFunctor_i.h, C/C++, 148 lines
dmri/src/library/gkg-dmri-connectivity-matrix/MeshToMeshConnectivityMatrixFunctor.h, C/C++, 65 lines
dmri/src/library/gkg-dmri-connectivity-matrix/MeshToMeshConnectivityMatrixFunctor_i.h, C/C++, 147 lines
dmri/src/library/gkg-dmri-connectivity-matrix/VolumeConnectivityMatrixFunctor.h, C/C++, 166 lines
dmri/src/library/gkg-dmri-connectivity-matrix/VolumeConnectivityMatrixFunctor_i.h, C/C++, 1,794 lines
dmri/src/library/gkg-dmri-connectivity-matrix/VolumeToMeshAndTextureConnectivityMatrixFunctor.h, C/C++, 183 lines
dmri/src/library/gkg-dmri-connectivity-matrix/VolumeToMeshAndTextureConnectivityMatrixFunctor_i.h, C/C++, 2,256 lines
dmri/src/library/gkg-dmri-connectivity-matrix/VolumeToMeshConnectivityMatrixFunctor.h, C/C++, 175 lines
dmri/src/library/gkg-dmri-connectivity-matrix/VolumeToMeshConnectivityMatrixFunctor_i.h, C/C++, 2,056 lines
dmri/src/library/gkg-dmri-connectivity-matrix/VolumeToVolumeConnectivityMatrixFunctor.h, C/C++, 64 lines
dmri/src/library/gkg-dmri-connectivity-matrix/VolumeToVolumeConnectivityMatrixFunctor_i.h, C/C++, 147 lines
dmri/src/library/gkg-dmri-container/BundleMap.h, C/C++, 156 lines
dmri/src/library/gkg-dmri-container/BundleMap_i.h, C/C++, 1,918 lines
dmri/src/library/gkg-dmri-container/BundleMeasureSpreadSheet.h, C/C++, 109 lines
dmri/src/library/gkg-dmri-container/BundleMeasureSpreadSheet_i.h, C/C++, 759 lines
dmri/src/library/gkg-dmri-container/DiffusionCartesianField.h, C/C++, 107 lines
dmri/src/library/gkg-dmri-container/DiffusionCartesianFieldFunctor.h, C/C++, 37 lines
dmri/src/library/gkg-dmri-container/DiffusionCartesianFieldFunctor_i.h, C/C++, 23 lines
dmri/src/library/gkg-dmri-container/DiffusionCartesianFieldGauge.h, C/C++, 36 lines
dmri/src/library/gkg-dmri-container/DiffusionCartesianFieldLoopContext.h, C/C++, 66 lines
dmri/src/library/gkg-dmri-container/DiffusionCartesianFieldLoopContext_i.h, C/C++, 220 lines
dmri/src/library/gkg-dmri-container/DiffusionCartesianField_i.h, C/C++, 1,153 lines
dmri/src/library/gkg-dmri-container/DiffusionContinuousField.h, C/C++, 40 lines
dmri/src/library/gkg-dmri-container/DiffusionContinuousField_i.h, C/C++, 31 lines
dmri/src/library/gkg-dmri-container/DiffusoidCartesianField.h, C/C++, 66 lines
dmri/src/library/gkg-dmri-container/DiffusoidCartesianFieldFactory.h, C/C++, 93 lines
dmri/src/library/gkg-dmri-container/EapCartesianField.h, C/C++, 72 lines
dmri/src/library/gkg-dmri-container/EapCartesianFieldFactory.h, C/C++, 88 lines
dmri/src/library/gkg-dmri-container/FiberMeasureSpreadSheet.h, C/C++, 113 lines
dmri/src/library/gkg-dmri-container/FiberMeasureSpreadSheet_i.h, C/C++, 627 lines
dmri/src/library/gkg-dmri-container/MicrostructureCartesianFieldFactory.h, C/C++, 89 lines
dmri/src/library/gkg-dmri-container/OdfCartesianField.h, C/C++, 74 lines
dmri/src/library/gkg-dmri-container/OdfCartesianFieldFactory.h, C/C++, 88 lines
dmri/src/library/gkg-dmri-container/OdfCartesianToContinuousField.h, C/C++, 49 lines
dmri/src/library/gkg-dmri-container/OdfContinuousField.h, C/C++, 37 lines
dmri/src/library/gkg-dmri-container/PdfCartesianField.h, C/C++, 173 lines
dmri/src/library/gkg-dmri-container/PdfCartesianFieldFactory.h, C/C++, 137 lines
dmri/src/library/gkg-dmri-container/SpinGlassAndConnectionMap.h, C/C++, 102 lines
dmri/src/library/gkg-dmri-diffusion-feature/DiffusionFeature.h, C/C++, 67 lines
dmri/src/library/gkg-dmri-diffusion-kernel/DiffusionKernel.h, C/C++, 127 lines
dmri/src/library/gkg-dmri-diffusoid-acquisition/AcquisitionDiffusoid.h, C/C++, 60 lines
dmri/src/library/gkg-dmri-diffusoid-acquisition/AcquisitionDiffusoidCartesianField.h, C/C++, 71 lines
dmri/src/library/gkg-dmri-diffusoid-functor/DiffusoidFunctor.h, C/C++, 50 lines
dmri/src/library/gkg-dmri-diffusoid-functor/DiffusoidFunctorDiffusoidSiteMap.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-diffusoid-functor/DiffusoidFunctorDiffusoidTextureMap.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-diffusoid-functor/DiffusoidFunctorFactory.h, C/C++, 49 lines
dmri/src/library/gkg-dmri-diffusoid-functor/DiffusoidFunctorFactory_i.h, C/C++, 169 lines
dmri/src/library/gkg-dmri-diffusoid-functor/DiffusoidFunctorMaxNormalizedMesh.h, C/C++, 47 lines
dmri/src/library/gkg-dmri-diffusoid-functor/DiffusoidFunctorMaximumOrientation.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-diffusoid-functor/DiffusoidFunctorMinMaxNormalizedMesh.h, C/C++, 47 lines
dmri/src/library/gkg-dmri-diffusoid-functor/DiffusoidFunctorMinimumOrientation.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-diffusoid-functor/DiffusoidFunctorRBSphericalMesh.h, C/C++, 48 lines
dmri/src/library/gkg-dmri-diffusoid-functor/DiffusoidFunctorStandardDeviation.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-diffusoid-functor/DiffusoidFunctor_i.h, C/C++, 996 lines
dmri/src/library/gkg-dmri-diffusoid/Diffusoid.h, C/C++, 80 lines
dmri/src/library/gkg-dmri-diffusoid/Diffusoid_i.h, C/C++, 37 lines
dmri/src/library/gkg-dmri-fiber-clustering/BrainLobesFiberClassifier.h, C/C++, 60 lines
dmri/src/library/gkg-dmri-fiber-clustering/FiberCluster.h, C/C++, 71 lines
dmri/src/library/gkg-dmri-fiber-clustering/FiberCluster_i.h, C/C++, 695 lines
dmri/src/library/gkg-dmri-fiber-clustering/FiberClustering.h, C/C++, 125 lines
dmri/src/library/gkg-dmri-fiber-clustering/FiberClustering_i.h, C/C++, 1,456 lines
dmri/src/library/gkg-dmri-fiber-clustering/LengthBasedFiberClustering.h, C/C++, 65 lines
dmri/src/library/gkg-dmri-fiber-clustering/LengthBasedFiberClustering_i.h, C/C++, 758 lines
dmri/src/library/gkg-dmri-fiber-clustering/MaximumDistanceBasedCentroidPartitioner.h, C/C++, 72 lines
dmri/src/library/gkg-dmri-fiber-clustering/RoiBasedFiberClassifier.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-fiber-clustering/RoiBasedFiberClassifier_i.h, C/C++, 66 lines
dmri/src/library/gkg-dmri-fiber-clustering/RoiBasedFiberClustering.h, C/C++, 83 lines
dmri/src/library/gkg-dmri-fiber-clustering/RoiBasedFiberClustering_i.h, C/C++, 1,110 lines
dmri/src/library/gkg-dmri-fiber-clustering/RoiIntersectionBasedFiberClassifier.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-fiber-clustering/RoiIntersectionBasedFiberClassifier_i.h, C/C++, 137 lines
dmri/src/library/gkg-dmri-fiber-clustering/VoronoiParceller.h, C/C++, 59 lines
dmri/src/library/gkg-dmri-fiber-clustering/WatershedBasedFiberClustering.h, C/C++, 95 lines
dmri/src/library/gkg-dmri-fiber-clustering/WatershedBasedFiberClustering_i.h, C/C++, 1,743 lines
dmri/src/library/gkg-dmri-fiber-distance/FiberDistanceFunctor.h, C/C++, 49 lines
dmri/src/library/gkg-dmri-fiber-distance/FiberDistanceFunctorFactory.h, C/C++, 57 lines
dmri/src/library/gkg-dmri-fiber-distance/NormalizedPairwiseCentroidDistanceFunctor.h, C/C++, 69 lines
dmri/src/library/gkg-dmri-fiber-measure/FiberCurvatureProfile.h, C/C++, 41 lines
dmri/src/library/gkg-dmri-fiber-measure/FiberCurvatureStatistics.h, C/C++, 54 lines
dmri/src/library/gkg-dmri-fiber-measure/FiberFromVolumeProfile.h, C/C++, 55 lines
dmri/src/library/gkg-dmri-fiber-measure/FiberFromVolumeStatistics.h, C/C++, 57 lines
dmri/src/library/gkg-dmri-fiber-measure/FiberLength.h, C/C++, 48 lines
dmri/src/library/gkg-dmri-fiber-measure/FiberMaximumCurvature.h, C/C++, 48 lines
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dmri/src/library/gkg-dmri-fiber-measure/FiberMeasureChecker.h, C/C++, 65 lines
dmri/src/library/gkg-dmri-fiber-measure/FiberMeasure_i.h, C/C++, 23 lines
dmri/src/library/gkg-dmri-fiber-measure/FiberTortuosity.h, C/C++, 48 lines
dmri/src/library/gkg-dmri-fiber-selector/DensityMapBasedFiberSelector.h, C/C++, 64 lines
dmri/src/library/gkg-dmri-fiber-selector/FiberSelection.h, C/C++, 91 lines
dmri/src/library/gkg-dmri-fiber-selector/FiberSelectionChecker.h, C/C++, 65 lines
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dmri/src/library/gkg-dmri-fiber-selector/FiberSelector.h, C/C++, 33 lines
dmri/src/library/gkg-dmri-fiber-selector/MeasureBasedFiberSelector.h, C/C++, 41 lines
dmri/src/library/gkg-dmri-fiber-selector/MeasureBasedFiberSelector_i.h, C/C++, 52 lines
dmri/src/library/gkg-dmri-fiber-selector/RoiBasedFiberSelector.h, C/C++, 107 lines
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dmri/src/library/gkg-dmri-global-tractography/GlobalTractographyCommandIds.h, C/C++, 32 lines
dmri/src/library/gkg-dmri-global-tractography/InitialSpinGlassConfigurationCommand.h, C/C++, 37 lines
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dmri/src/library/gkg-dmri-global-tractography/ResetCommand.h, C/C++, 28 lines
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dmri/src/library/gkg-dmri-io/DefaultAsciiItemWriterOfTwoPoolModel_i.h, C/C++, 108 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemReaderOfDiffusionFeature_i.h, C/C++, 125 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemReaderOfDiffusoid_i.h, C/C++, 104 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemReaderOfEap_i.h, C/C++, 127 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemReaderOfOdf_i.h, C/C++, 88 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemReaderOfPdf_i.h, C/C++, 88 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemReaderOfTensor_i.h, C/C++, 122 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemReaderOfTwoPoolModel_i.h, C/C++, 122 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemWriterOfDiffusionFeature_i.h, C/C++, 113 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemWriterOfDiffusoid_i.h, C/C++, 101 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemWriterOfEap_i.h, C/C++, 115 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemWriterOfOdf_i.h, C/C++, 89 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemWriterOfPdf_i.h, C/C++, 89 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemWriterOfTensor_i.h, C/C++, 108 lines
dmri/src/library/gkg-dmri-io/DefaultBSwapItemWriterOfTwoPoolModel_i.h, C/C++, 108 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemReaderOfDiffusionFeature_i.h, C/C++, 125 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemReaderOfDiffusoid_i.h, C/C++, 104 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemReaderOfEap_i.h, C/C++, 127 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemReaderOfOdf_i.h, C/C++, 87 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemReaderOfPdf_i.h, C/C++, 87 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemReaderOfTensor_i.h, C/C++, 122 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemReaderOfTwoPoolModel_i.h, C/C++, 122 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemWriterOfDiffusionFeature_i.h, C/C++, 114 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemWriterOfDiffusoid_i.h, C/C++, 101 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemWriterOfEap_i.h, C/C++, 116 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemWriterOfOdf_i.h, C/C++, 90 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemWriterOfPdf_i.h, C/C++, 90 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemWriterOfTensor_i.h, C/C++, 108 lines
dmri/src/library/gkg-dmri-io/DefaultBinaryItemWriterOfTwoPoolModel_i.h, C/C++, 108 lines
dmri/src/library/gkg-dmri-io/DiffusoidFunctorWriter.h, C/C++, 68 lines
dmri/src/library/gkg-dmri-io/EapFunctorWriter.h, C/C++, 69 lines
dmri/src/library/gkg-dmri-io/FiberMeasureSpreadSheetAnalyzer.h, C/C++, 110 lines
dmri/src/library/gkg-dmri-io/FiberMeasureSpreadSheetAnalyzer_i.h, C/C++, 80 lines
dmri/src/library/gkg-dmri-io/FiberMeasureSpreadSheetDiskFormat.h, C/C++, 141 lines
dmri/src/library/gkg-dmri-io/FiberMeasureSpreadSheetDiskFormat_i.h, C/C++, 393 lines
dmri/src/library/gkg-dmri-io/ForceHardLinkWithGinkgoLibrary.h, C/C++, 20 lines
dmri/src/library/gkg-dmri-io/OdfFunctorWriter.h, C/C++, 73 lines
dmri/src/library/gkg-dmri-io/PdfFunctorWriter.h, C/C++, 73 lines
dmri/src/library/gkg-dmri-io/TckBundleMapAnalyzer.h, C/C++, 40 lines
dmri/src/library/gkg-dmri-io/TckBundleMapDiskFormat.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-io/TensorFunctorWriter.h, C/C++, 56 lines
dmri/src/library/gkg-dmri-io/TrackvisBundleMapDiskFormat.h, C/C++, 54 lines
dmri/src/library/gkg-dmri-io/TrxBundleMapDiskFormat.h, C/C++, 54 lines
dmri/src/library/gkg-dmri-io/TwoPoolModelFunctorWriter.h, C/C++, 56 lines
dmri/src/library/gkg-dmri-microstructure-axcaliber/AxCaliberMCMCFunction.h, C/C++, 57 lines
dmri/src/library/gkg-dmri-microstructure-axcaliber/AxCaliberMCMCParameterSet.h, C/C++, 48 lines
dmri/src/library/gkg-dmri-microstructure-axcaliber/AxCaliberNLPFunction.h, C/C++, 49 lines
dmri/src/library/gkg-dmri-microstructure-axcaliber/AxCaliberOdf.h, C/C++, 104 lines
dmri/src/library/gkg-dmri-microstructure-axcaliber/AxCaliberOdfCartesianField.h, C/C++, 177 lines
dmri/src/library/gkg-dmri-microstructure-axcaliber/AxCaliberOdfCartesianFieldFunctor.h, C/C++, 57 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/AxonMappingMCMCFunction.h, C/C++, 28 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/AxonMappingMCMCParameterSet.h, C/C++, 41 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/AxonMappingNLPFunction.h, C/C++, 48 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/AxonMappingOdf.h, C/C++, 72 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/AxonMappingOdfCartesianField.h, C/C++, 126 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/CTOGSEAxonMappingMCMCFunction.h, C/C++, 54 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/CTOGSEAxonMappingMCMCParameterSet.h, C/C++, 33 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/CTOGSEAxonMappingOdfCartesianFieldFunctor.h, C/C++, 61 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/CTOGSEDefines.h, C/C++, 72 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/CTOGSEIntracellularContributionCache.h, C/C++, 148 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/CanonicalWatsonSphericalHarmonicsCache.h, C/C++, 66 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/OptimizationDefines.h, C/C++, 28 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/PGSEAxonMappingMCMCFunction.h, C/C++, 54 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/PGSEAxonMappingMCMCParameterSet.h, C/C++, 33 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/PGSEAxonMappingOdfCartesianFieldFunctor.h, C/C++, 61 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/PGSEDefines.h, C/C++, 71 lines
dmri/src/library/gkg-dmri-microstructure-axon-mapping/PGSEIntracellularContributionCache.h, C/C++, 147 lines
dmri/src/library/gkg-dmri-microstructure-ivim/IvimNLPFunction.h, C/C++, 51 lines
dmri/src/library/gkg-dmri-microstructure-ivim/IvimOdf.h, C/C++, 115 lines
dmri/src/library/gkg-dmri-microstructure-ivim/IvimOdfCartesianField.h, C/C++, 122 lines
dmri/src/library/gkg-dmri-microstructure-ivim/IvimOdfCartesianFieldFunctor.h, C/C++, 57 lines
dmri/src/library/gkg-dmri-microstructure-model/MicrostructureMCMCFunction.h, C/C++, 86 lines
dmri/src/library/gkg-dmri-microstructure-noddi/NoddiMCMCBinghamFunction.h, C/C++, 52 lines
dmri/src/library/gkg-dmri-microstructure-noddi/NoddiMCMCBinghamParameterSet.h, C/C++, 33 lines
dmri/src/library/gkg-dmri-microstructure-noddi/NoddiMCMCFunction.h, C/C++, 32 lines
dmri/src/library/gkg-dmri-microstructure-noddi/NoddiMCMCParameterSet.h, C/C++, 41 lines
dmri/src/library/gkg-dmri-microstructure-noddi/NoddiMCMCWatsonFunction.h, C/C++, 66 lines
dmri/src/library/gkg-dmri-microstructure-noddi/NoddiMCMCWatsonParameterSet.h, C/C++, 33 lines
dmri/src/library/gkg-dmri-microstructure-noddi/NoddiNLPFunction.h, C/C++, 48 lines
dmri/src/library/gkg-dmri-microstructure-noddi/NoddiOdf.h, C/C++, 88 lines
dmri/src/library/gkg-dmri-microstructure-noddi/NoddiOdfCartesianField.h, C/C++, 246 lines
dmri/src/library/gkg-dmri-microstructure-noddi/NoddiOdfCartesianFieldFunctor.h, C/C++, 60 lines
dmri/src/library/gkg-dmri-microstructure-plot/MeasurementVsModelAttenuation.h, C/C++, 59 lines
dmri/src/library/gkg-dmri-microstructure-plot/MeasurementVsModelPlotter.h, C/C++, 51 lines
dmri/src/library/gkg-dmri-noise-correction/SingleShellSHRicianNoiseCorrection.h, C/C++, 111 lines
dmri/src/library/gkg-dmri-odf-aqbi/AnalyticalQBallOdf.h, C/C++, 77 lines
dmri/src/library/gkg-dmri-odf-aqbi/AnalyticalQBallOdfCartesianField.h, C/C++, 84 lines
dmri/src/library/gkg-dmri-odf-aqbi/AnalyticalQBallOdfCartesianFieldFunctor.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-charmed/CharmedOdf.h, C/C++, 88 lines
dmri/src/library/gkg-dmri-odf-charmed/CharmedOdfCartesianField.h, C/C++, 243 lines
dmri/src/library/gkg-dmri-odf-dot/DotOdf.h, C/C++, 115 lines
dmri/src/library/gkg-dmri-odf-dot/DotOdfCartesianField.h, C/C++, 86 lines
dmri/src/library/gkg-dmri-odf-dot/DotOdfCartesianFieldFunctor.h, C/C++, 47 lines
dmri/src/library/gkg-dmri-odf-dpi/DpiOdf.h, C/C++, 84 lines
dmri/src/library/gkg-dmri-odf-dpi/DpiOdfCartesianField.h, C/C++, 80 lines
dmri/src/library/gkg-dmri-odf-dsi/DsiOdf.h, C/C++, 98 lines
dmri/src/library/gkg-dmri-odf-dsi/DsiOdfCartesianField.h, C/C++, 85 lines
dmri/src/library/gkg-dmri-odf-dsi/DsiOdfCartesianFieldFunctor.h, C/C++, 49 lines
dmri/src/library/gkg-dmri-odf-dsi/HanningWindow.h, C/C++, 331 lines
dmri/src/library/gkg-dmri-odf-dti/TensorOdf.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-odf-dti/TensorOdfCartesianField.h, C/C++, 77 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctor.h, C/C++, 53 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorAxCaliberFittedVolume.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorAxonDiameter.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorAxonDiameterStdDev.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorDecompositionSH.h, C/C++, 47 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorDwDecompositionSH.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorExtraPerpendicularDiffusivity.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorFactory.h, C/C++, 45 lines
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dmri/src/library/gkg-dmri-odf-functor/OdfFunctorGFA.h, C/C++, 43 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorGFAScaledMaxNormalizedMesh.h, C/C++, 57 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorGFAScaledMinMaxNormalizedMesh.h, C/C++, 57 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorHinderedDiffusivity.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorIntracellularFraction.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorIntracellularPerpendicularDiffusivity.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorIsotropicDiffusivity.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorIsotropicFraction.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorIvimCoefficients.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorIvimDiffusivity.h, C/C++, 43 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorIvimFittedVolume.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorIvimFraction.h, C/C++, 43 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorIvimPowderAverage.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorKappa.h, C/C++, 43 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorMDGFAScaledMaxNormalizedMesh.h, C/C++, 60 lines
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dmri/src/library/gkg-dmri-odf-functor/OdfFunctorMaxNormalizedPositiveMesh.h, C/C++, 47 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorMeanDiffusivity.h, C/C++, 51 lines
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dmri/src/library/gkg-dmri-odf-functor/OdfFunctorMeanSquaredDisplacement.h, C/C++, 44 lines
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dmri/src/library/gkg-dmri-odf-functor/OdfFunctorMinMaxNormalizedVolume.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorNematicOrder.h, C/C++, 43 lines
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dmri/src/library/gkg-dmri-odf-functor/OdfFunctorNormalizedReturnToOriginProbability.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorOdfGibbsSampling.h, C/C++, 53 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorOdfPeakMap.h, C/C++, 53 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorOdfSiteMap.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorOdfTextureMap.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorOrientationDispersion.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorParallelDiffusivity.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorParenchymaDiffusivity.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorParenchymaFA.h, C/C++, 43 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorPrincipalOrientation.h, C/C++, 46 lines
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dmri/src/library/gkg-dmri-odf-functor/OdfFunctorReturnToOriginProbability.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorStandardDeviation.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-odf-functor/OdfFunctorStationaryFraction.h, C/C++, 44 lines
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dmri/src/library/gkg-dmri-odf-functor/SphericalHarmonicsOdfPeakFinder.h, C/C++, 132 lines
dmri/src/library/gkg-dmri-odf-msmt-csd/MSMTCSDFiberOdfCartesianField.h, C/C++, 160 lines
dmri/src/library/gkg-dmri-odf-msmt-csd/MSMTCSDFiberOdfCartesianFieldFunctor.h, C/C++, 42 lines
dmri/src/library/gkg-dmri-odf-msmt-csd/MSMTConstrainedSphericalDeconvolutionFiberOdf.h, C/C++, 62 lines
dmri/src/library/gkg-dmri-odf-qbi/QBallOdf.h, C/C++, 73 lines
dmri/src/library/gkg-dmri-odf-qbi/QBallOdfCartesianField.h, C/C++, 107 lines
dmri/src/library/gkg-dmri-odf-sa-aqbi/SolidAngleAnalyticalQBallOdf.h, C/C++, 78 lines
dmri/src/library/gkg-dmri-odf-sa-aqbi/SolidAngleAnalyticalQBallOdfCartesianField.h, C/C++, 87 lines
dmri/src/library/gkg-dmri-odf-sa-aqbi/SolidAngleAnalyticalQBallOdfCartesianFieldFunctor.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-odf-sd/SDFiberOdfCartesianField.h, C/C++, 99 lines
dmri/src/library/gkg-dmri-odf-sd/SDFiberOdfCartesianFieldFunctor.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-sd/SphericalDeconvolutionFiberOdf.h, C/C++, 97 lines
dmri/src/library/gkg-dmri-odf-sdt/SDTFiberOdfCartesianField.h, C/C++, 98 lines
dmri/src/library/gkg-dmri-odf-sdt/SDTFiberOdfCartesianFieldFunctor.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-odf-sdt/SharpeningDeconvolutionTransformFiberOdf.h, C/C++, 99 lines
dmri/src/library/gkg-dmri-odf/OrientationDistributionFunction.h, C/C++, 188 lines
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dmri/src/library/gkg-dmri-odf/PartialVolumingOdf.h, C/C++, 43 lines
dmri/src/library/gkg-dmri-odf/SHFiberOdf.h, C/C++, 61 lines
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dmri/src/library/gkg-dmri-pdf-dpi/DpiEapCartesianFieldFunctor.h, C/C++, 48 lines
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dmri/src/library/gkg-dmri-pdf-functor/EapFunctor.h, C/C++, 54 lines
dmri/src/library/gkg-dmri-pdf-functor/EapFunctorDwDecompositionSH.h, C/C++, 45 lines
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dmri/src/library/gkg-dmri-pdf-functor/EapFunctorEapMeshes.h, C/C++, 45 lines
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dmri/src/library/gkg-dmri-pdf-functor/EapFunctorEapSiteMap.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-pdf-functor/EapFunctorEapTextureMap.h, C/C++, 46 lines
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dmri/src/library/gkg-dmri-pdf-functor/EapFunctorGFAScaledOdfMinMaxNormalizedMesh.h, C/C++, 50 lines
dmri/src/library/gkg-dmri-pdf-functor/EapFunctorMSDGFAScaledEapMeshesMaxNormalized.h, C/C++, 60 lines
dmri/src/library/gkg-dmri-pdf-functor/EapFunctorMSDGFAScaledEapMeshesMinMaxNormalized.h, C/C++, 60 lines
dmri/src/library/gkg-dmri-pdf-functor/EapFunctorMSDGFAScaledOdfMinMaxNormalizedMesh.h, C/C++, 60 lines
dmri/src/library/gkg-dmri-pdf-functor/EapFunctorMeanSquaredDisplacement.h, C/C++, 47 lines
dmri/src/library/gkg-dmri-pdf-functor/EapFunctorNormalizedGFA.h, C/C++, 43 lines
dmri/src/library/gkg-dmri-pdf-functor/EapFunctorNormalizedMeanSquaredDisplacement.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-pdf-functor/EapFunctorNormalizedReturnToOriginProbability.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-pdf-functor/EapFunctorOdfMinMaxNormalizedMesh.h, C/C++, 48 lines
dmri/src/library/gkg-dmri-pdf-functor/EapFunctorReturnToOriginProbability.h, C/C++, 47 lines
dmri/src/library/gkg-dmri-pdf-functor/EapFunctorReturnToOriginProbabilityNumerical.h, C/C++, 47 lines
dmri/src/library/gkg-dmri-pdf-functor/EapFunctor_i.h, C/C++, 1,532 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctor.h, C/C++, 53 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctorDecomposition.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctorFactory.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctorFactory_i.h, C/C++, 164 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctorNonGaussianity.h, C/C++, 43 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctorOdfSiteMap.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctorOdfTextureMap.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctorPdfSiteMap.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctorPdfTextureMap.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctorPropagatorAnisotropy.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctorRGB.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctorReturnToAxisProbability.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctorReturnToOriginProbability.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctorReturnToPlaneProbability.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-pdf-functor/PdfFunctor_i.h, C/C++, 996 lines
dmri/src/library/gkg-dmri-pdf-shore/ShorePdf.h, C/C++, 109 lines
dmri/src/library/gkg-dmri-pdf-shore/ShorePdfCartesianField.h, C/C++, 118 lines
dmri/src/library/gkg-dmri-pdf-shore/ShorePdfCartesianFieldFunctor.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModel.h, C/C++, 213 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelCartesianField.h, C/C++, 87 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelCartesianFieldFactory.h, C/C++, 51 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctor.h, C/C++, 53 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctorADC.h, C/C++, 43 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctorDij.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctorEigenValues.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctorFA.h, C/C++, 43 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctorFactory.h, C/C++, 49 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctorFactory_i.h, C/C++, 172 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctorFastRGB.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctorLambdaParallel.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctorLambdaTransverse.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctorSlowRGB.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctorTwoPoolModelSiteMap.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctorTwoPoolModelTextureMap.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctorVolumeFractions.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelFunctor_i.h, C/C++, 532 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelLevenbergMarquardtFunction.h, C/C++, 34 lines
dmri/src/library/gkg-dmri-pdf-two-pool-model/TwoPoolModelNelderMeadSimplexFunction.h, C/C++, 40 lines
dmri/src/library/gkg-dmri-pdf/PdfMoment.h, C/C++, 50 lines
dmri/src/library/gkg-dmri-pdf/ProbabilityDensityFunction.h, C/C++, 125 lines
dmri/src/library/gkg-dmri-ph-basis/PolarHarmonicsCache.h, C/C++, 115 lines
dmri/src/library/gkg-dmri-qspace-sampling/ArbitraryQSpaceSampling.h, C/C++, 46 lines
dmri/src/library/gkg-dmri-qspace-sampling/CartesianQSpaceSampling.h, C/C++, 45 lines
dmri/src/library/gkg-dmri-qspace-sampling/CustomMultipleDifferentShellQSpaceSampling.h, C/C++, 60 lines
dmri/src/library/gkg-dmri-qspace-sampling/CustomSingleShellQSpaceSampling.h, C/C++, 38 lines
dmri/src/library/gkg-dmri-qspace-sampling/GehcMultipleDifferentShellQSpaceSampling.h, C/C++, 34 lines
dmri/src/library/gkg-dmri-qspace-sampling/GehcMultipleSameShellQSpaceSampling.h, C/C++, 34 lines
dmri/src/library/gkg-dmri-qspace-sampling/GehcNewMultipleDifferentShellQSpaceSampling.h, C/C++, 34 lines
dmri/src/library/gkg-dmri-qspace-sampling/GehcNewMultipleSameShellQSpaceSampling.h, C/C++, 34 lines
dmri/src/library/gkg-dmri-qspace-sampling/GehcNewSingleShellQSpaceSampling.h, C/C++, 33 lines
dmri/src/library/gkg-dmri-qspace-sampling/GehcSingleShellQSpaceSampling.h, C/C++, 33 lines
dmri/src/library/gkg-dmri-qspace-sampling/GkgMultipleDifferentShellQSpaceSampling.h, C/C++, 34 lines
dmri/src/library/gkg-dmri-qspace-sampling/GkgMultipleSameShellQSpaceSampling.h, C/C++, 34 lines
dmri/src/library/gkg-dmri-qspace-sampling/GkgSingleShellQSpaceSampling.h, C/C++, 33 lines
dmri/src/library/gkg-dmri-qspace-sampling/MultipleDifferentShellQSpaceSampling.h, C/C++, 36 lines
dmri/src/library/gkg-dmri-qspace-sampling/MultipleSameShellQSpaceSampling.h, C/C++, 36 lines
dmri/src/library/gkg-dmri-qspace-sampling/MultipleShellQSpaceSampling.h, C/C++, 48 lines
dmri/src/library/gkg-dmri-qspace-sampling/QSpaceSampling.h, C/C++, 90 lines
dmri/src/library/gkg-dmri-qspace-sampling/QSpaceSamplingFactory.h, C/C++, 44 lines
dmri/src/library/gkg-dmri-qspace-sampling/SingleDirectionQSpaceSampling.h, C/C++, 47 lines
dmri/src/library/gkg-dmri-qspace-sampling/SingleShellQSpaceSampling.h, C/C++, 49 lines
dmri/src/library/gkg-dmri-qspace-sampling/SmsVb15MultipleDifferentShellQSpaceSampling.h, C/C++, 34 lines
dmri/src/library/gkg-dmri-qspace-sampling/SmsVb15MultipleSameShellQSpaceSampling.h, C/C++, 34 lines
dmri/src/library/gkg-dmri-qspace-sampling/SmsVb15SingleShellQSpaceSampling.h, C/C++, 33 lines
dmri/src/library/gkg-dmri-qspace-sampling/SphericalQSpaceSampling.h, C/C++, 38 lines
dmri/src/library/gkg-dmri-sequence-tuning/PGSESequenceTuning.h, C/C++, 28 lines
dmri/src/library/gkg-dmri-sh-basis/SymmetricalSphericalHarmonicsCache.h, C/C++, 52 lines
dmri/src/library/gkg-dmri-tractography/AnatomicallyConstrainedSeedingStrategy.h, C/C++, 52 lines
dmri/src/library/gkg-dmri-tractography/AnatomicallyInformedStoppingStrategy.h, C/C++, 53 lines
dmri/src/library/gkg-dmri-tractography/DeterministicTractographyAlgorithm.h, C/C++, 64 lines
dmri/src/library/gkg-dmri-tractography/DeterministicTractographyAlgorithm_i.h, C/C++, 142 lines
dmri/src/library/gkg-dmri-tractography/GibbsSampledStartingOrientationStrategy.h, C/C++, 39 lines
dmri/src/library/gkg-dmri-tractography/MaskAndGFAStoppingStrategy.h, C/C++, 53 lines
dmri/src/library/gkg-dmri-tractography/PrincipalStartingOrientationStrategy.h, C/C++, 32 lines
dmri/src/library/gkg-dmri-tractography/ProbabilisticTractographyAlgorithm.h, C/C++, 97 lines
dmri/src/library/gkg-dmri-tractography/ProbabilisticTractographyAlgorithm_i.h, C/C++, 587 lines
dmri/src/library/gkg-dmri-tractography/RegularizedDeterministicTractographyAlgorithm.h, C/C++, 97 lines, 1 match
dmri/src/library/gkg-dmri-tractography/RegularizedDeterministicTractographyAlgorithm_i.h, C/C++, 512 lines, 1 match
dmri/src/library/gkg-dmri-tractography/SeedingStrategy.h, C/C++, 68 lines
dmri/src/library/gkg-dmri-tractography/StartingOrientationStrategy.h, C/C++, 33 lines
dmri/src/library/gkg-dmri-tractography/StoppingStrategy.h, C/C++, 54 lines
dmri/src/library/gkg-dmri-tractography/StreamlineTractographyAlgorithm.h, C/C++, 170 lines
dmri/src/library/gkg-dmri-tractography/StreamlineTractographyAlgorithm_i.h, C/C++, 680 lines
dmri/src/library/gkg-dmri-tractography/TractographyAlgorithm.h, C/C++, 89 lines
dmri/src/library/gkg-dmri-tractography/TractographyAlgorithmFactory.h, C/C++, 61 lines
dmri/src/library/gkg-dmri-tractography/TractographyAlgorithm_i.h, C/C++, 102 lines
dmri/src/library/gkg-dmri-tractography/UnconstrainedSeedingStrategy.h, C/C++, 43 lines
dmri/src/plugin/gkg-dmri-plugin-functors/AddRicianNoise/AddRicianNoiseCommand.h, C/C++, 58 lines
dmri/src/plugin/gkg-dmri-plugin-functors/B0InhomogeneityCorrection/B0InhomogeneityCorrectionCommand.h, C/C++, 75 lines
dmri/src/plugin/gkg-dmri-plugin-functors/Dwi90DegreeCrossingPhantomSimulator/Dwi90DegreeCrossingPhantomSimulatorCommand.h, C/C++, 75 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiAdvancedFiberLabelling/DwiAdvancedFiberLabellingCommand.h, C/C++, 90 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiBValue/DwiBValueCommand.h, C/C++, 69 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiBundleMapAlphaShapeMesher/DwiBundleMapAlphaShapeMesherCommand.h, C/C++, 93 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiBundleMapConvexHull/DwiBundleMapConvexHullCommand.h, C/C++, 72 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiBundleMapDensityMask/DwiBundleMapDensityMaskCommand.h, C/C++, 76 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiBundleMapHierarchy/DwiBundleMapHierarchyCommand.h, C/C++, 58 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiBundleMapSectionMask/DwiBundleMapSectionMaskCommand.h, C/C++, 76 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiBundleMapToObjAndMtlConverter/DwiBundleMapToObjAndMtlConverterCommand.h, C/C++, 67 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiBundleMapToPointCloudConverter/DwiBundleMapToPointCloudConverterCommand.h, C/C++, 67 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiBundleMapTransform3d/DwiBundleMapTransform3dCommand.h, C/C++, 60 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiBundleMeasure/DwiBundleMeasureCommand.h, C/C++, 64 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiBundleOperator/DwiBundleOperatorCommand.h, C/C++, 69 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiChangeRGBBackgroundColor/DwiChangeRGBBackgroundColorCommand.h, C/C++, 63 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiConnectivityMatrix/DwiConnectivityMatrixCommand.h, C/C++, 91 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiDiffusionKernel/DwiDiffusionKernelCommand.h, C/C++, 75 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiDiffusoidField/DwiDiffusoidFieldCommand.h, C/C++, 100 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiDirectionFieldDiscrepancy/DwiDirectionFieldDiscrepancyCommand.h, C/C++, 67 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiDiskFormatConverter/DwiDiskFormatConverterCommand.h, C/C++, 64 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiEapField/DwiEapFieldCommand.h, C/C++, 105 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiEddyCurrent/DwiEddyCurrentCommand.h, C/C++, 98 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiFiberFilter/DwiFiberFilterCommand.h, C/C++, 70 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiFiberLabelling/DwiFiberLabellingCommand.h, C/C++, 90 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiFiberMeasure/DwiFiberMeasureCommand.h, C/C++, 64 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiGFAHistogram/DwiGFAHistogramCommand.h, C/C++, 62 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiGaussianSimulator/DiffusionGaussianModel.h, C/C++, 32 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiGaussianSimulator/DiffusionGaussianModel1.h, C/C++, 50 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiGaussianSimulator/DiffusionGaussianModel2.h, C/C++, 58 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiGaussianSimulator/DiffusionGaussianModel3.h, C/C++, 54 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiGaussianSimulator/DwiGaussianSimulatorCommand.h, C/C++, 86 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiGeometricMean/DwiGeometricMeanCommand.h, C/C++, 61 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiGeometrySimulator/DwiGeometrySimulatorCommand.h, C/C++, 58 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiGinkgoSequenceParameters/DwiGinkgoSequenceParametersCommand.h, C/C++, 63 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiInterSubjectFiberClustering/DwiInterSubjectFiberClusteringCommand.h, C/C++, 97 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiIntraSubjectFiberClustering/DwiIntraSubjectFiberClusteringCommand.h, C/C++, 128 lines, 2 matches
dmri/src/plugin/gkg-dmri-plugin-functors/DwiIntraSubjectTractogramSplitter/DwiIntraSubjectTractogramSplitterCommand.h, C/C++, 96 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiMakeWholeOrientationSet/DwiMakeWholeOrientationSetCommand.h, C/C++, 66 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiMicrostructureField/DwiMicrostructureFieldCommand.h, C/C++, 105 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiMotionCorrection/DwiMotionCorrectionCommand.h, C/C++, 100 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiMultipleShellQSpaceSamplingSplitter/DwiMultipleShellQSpaceSamplingSplitterCommand.h, C/C++, 63 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiMultipleSubjectTrackDensityImaging/DwiMultipleSubjectTrackDensityImagingCommand.h, C/C++, 86 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiNodePaving/DwiNodePavingCommand.h, C/C++, 70 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiNoiseFilter/DwiNoiseFilterCommand.h, C/C++, 85 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiNoiseFilter/denoise.sh, Shell, 22 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiNonCentralChiFitAbacus/DwiNonCentralChiFitAbacusCommand.h, C/C++, 77 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiOdfField/DwiOdfFieldCommand.h, C/C++, 104 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiOdfFieldFunctor/DwiOdfFieldFunctorCommand.h, C/C++, 87 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiOdfLMSDifference/DwiOdfLMSDifferenceCommand.h, C/C++, 73 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiOutlierFilter/DwiOutlierFilterCommand.h, C/C++, 81 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiParallelNoiseFilter/DwiParallelNoiseFilterCommand.h, C/C++, 89 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiPdfField/DwiPdfFieldCommand.h, C/C++, 104 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiPhantomSNRMeasure/DwiPhantomSNRMeasureCommand.h, C/C++, 65 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiPostMortemBlockToWholeImageComposer/DwiPostMortemBlockToWholeImageComposerCommand.h, C/C++, 109 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiQSpaceDomainFinder/DwiQSpaceDomainFinderCommand.h, C/C++, 89 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiQSpaceResampler/DwiQSpaceResamplerCommand.h, C/C++, 83 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiQSpaceSampling/DwiQSpaceSamplingCommand.h, C/C++, 65 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiQSpaceSamplingRendering/DwiQSpaceSamplingRenderingCommand.h, C/C++, 68 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiResampling3d/DwiResampling3dCommand.h, C/C++, 79 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiRicianFitAbacus/DwiRicianFitAbacusCommand.h, C/C++, 74 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiSingleShellNoiseFilter/DwiSingleShellNoiseFilterCommand.h, C/C++, 92 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiSingleSubjectTrackDensityImaging/DwiSingleSubjectTrackDensityImagingCommand.h, C/C++, 74 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiSiteAndTextureToVolumeConverter/DwiSiteAndTextureToVolumeConverterCommand.h, C/C++, 67 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiSubVolume/DwiSubVolumeCommand.h, C/C++, 68 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiSyntheticCorpusCallosumMidSagittalPlane/DwiSyntheticCorpusCallosumMidSagittalPlaneCommand.h, C/C++, 67 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiTensorField/DwiTensorFieldCommand.h, C/C++, 96 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiTensorNoiseContamination/DwiTensorNoiseContaminationCommand.h, C/C++, 68 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiTorch01/DwiTorch01Command.h, C/C++, 55 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiTractography/DwiTractographyCommand.h, C/C++, 102 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiTractographyMask/DwiTractographyMaskCommand.h, C/C++, 71 lines
dmri/src/plugin/gkg-dmri-plugin-functors/DwiTwoPoolModelField/DwiTwoPoolModelFieldCommand.h, C/C++, 99 lines
dmri/src/plugin/gkg-dmri-plugin-functors/EbrainsIngestionService/EbrainsIngestionServiceCommand.h, C/C++, 118 lines
dmri/src/plugin/gkg-dmri-plugin-functors/MeshMapSlicer/MeshMapSlicerCommand.h, C/C++, 69 lines
dmri/src/plugin/gkg-dmri-plugin-vtk/VtkBundleMapDiskFormat.h, C/C++, 54 lines
dmri/src/test/GkgDwiPdfFieldDiffeomorphicRegistration/DataCostD.h, C/C++, 451 lines
dmri/src/test/GkgDwiPdfFieldDiffeomorphicRegistration/DiffeomorphicTransformations.h, C/C++, 627 lines
dmri/src/test/GkgDwiPdfFieldDiffeomorphicRegistration/DissimilarityEnergyComputationContext.h, C/C++, 47 lines
dmri/src/test/GkgDwiPdfFieldDiffeomorphicRegistration/MinimumSpanningTree.h, C/C++, 381 lines
dmri/src/test/GkgDwiPdfFieldDiffeomorphicRegistration/PdfFieldInterpolation3DContext.h, C/C++, 60 lines
dmri/src/test/GkgDwiPdfFieldDiffeomorphicRegistration/PolarHarmonicsCache.h, C/C++, 116 lines
dmri/src/test/GkgDwiPdfFieldDiffeomorphicRegistration/ProbabilityDensityFunction.h, C/C++, 136 lines
dmri/src/test/GkgDwiPdfFieldDiffeomorphicRegistration/Quaternion.h, C/C++, 62 lines
dmri/src/test/GkgDwiPdfFieldDiffeomorphicRegistration/ReferenceHasSiteBoolVectorContext.h, C/C++, 43 lines
dmri/src/test/GkgDwiPdfFieldDiffeomorphicRegistration/Regularization.h, C/C++, 497 lines
dmri/src/test/GkgDwiPdfFieldDiffeomorphicRegistration/ReorientationContext.h, C/C++, 62 lines
dmri/src/test/GkgDwiPdfFieldDiffeomorphicRegistration/SetStandardBasisTypeContext.h, C/C++, 40 lines
dmri/src/test/GkgDwiPdfFieldDiffeomorphicRegistration/SymmetricDiffeomorphism.h, C/C++, 1,023 lines
dmri/src/test/GkgTestDwiConnectivityMatrix/script.sh, Shell, 17 lines
dmri/src/test/GkgTestNoddiModel01/script.sh, Shell, 122 lines
fmri/src/library/gkg-fmri-contrast/ContrastEffects.h, C/C++, 85 lines
fmri/src/library/gkg-fmri-contrast/ContrastEffectsContext.h, C/C++, 44 lines
fmri/src/library/gkg-fmri-glm/BoldGeneralLinearModelContext.h, C/C++, 42 lines
fmri/src/library/gkg-fmri-glm/BoldGeneralLinearModelContext_i.h, C/C++, 59 lines
fmri/src/library/gkg-fmri-glm/BoldGeneralLinearModelSolveContext.h, C/C++, 46 lines
fmri/src/library/gkg-fmri-glm/BoldGeneralLinearModelSolveContext_i.h, C/C++, 65 lines
fmri/src/library/gkg-fmri-glm/BoldGeneralLinearModelSolver.h, C/C++, 52 lines
fmri/src/library/gkg-fmri-glm/BoldGeneralLinearModelSolver_i.h, C/C++, 144 lines
fmri/src/library/gkg-fmri-hrf/CanonicalHRF.h, C/C++, 56 lines
fmri/src/library/gkg-fmri-hrf/HemodynamicResponseFunction.h, C/C++, 40 lines
fmri/src/library/gkg-fmri-io/ContrastEffectsAnalyzer.h, C/C++, 40 lines
fmri/src/library/gkg-fmri-io/ContrastEffectsDiskFormat.h, C/C++, 55 lines
fmri/src/library/gkg-fmri-io/ParadigmAnalyzer.h, C/C++, 40 lines
fmri/src/library/gkg-fmri-io/ParadigmDiskFormat.h, C/C++, 55 lines
fmri/src/library/gkg-fmri-paradigm/Paradigm.h, C/C++, 60 lines
fmri/src/library/gkg-fmri-statistics/GLMStatisticalFunction.h, C/C++, 42 lines
fmri/src/library/gkg-fmri-statistics/PValueFunction.h, C/C++, 36 lines
fmri/src/library/gkg-fmri-statistics/StatisticalFunctionFactory.h, C/C++, 109 lines
fmri/src/library/gkg-fmri-statistics/StatisticalFunctionScoreContext.h, C/C++, 46 lines
fmri/src/library/gkg-fmri-statistics/StatisticalFunctionScoreMaskContext.h, C/C++, 50 lines
fmri/src/library/gkg-fmri-statistics/TScoreFunction.h, C/C++, 31 lines
fmri/src/library/gkg-fmri-statistics/ZScoreFunction.h, C/C++, 31 lines
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processing/src/library/gkg-processing-io/AimsAcPcIhAnalyzer.h, C/C++, 40 lines
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processing/src/library/gkg-processing-io/AimsBucketAnalyzer.h, C/C++, 40 lines
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processing/src/library/gkg-processing-io/SiteMapAnalyzer.h, C/C++, 41 lines
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processing/src/library/gkg-processing-io/StdVectorAsciiItemReaderOfCurve3d_i.h, C/C++, 225 lines
processing/src/library/gkg-processing-io/StdVectorAsciiItemReaderOfLightCurve3d_i.h, C/C++, 225 lines
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processing/src/library/gkg-processing-io/StdVectorBSwapItemReaderOfCurve3d_i.h, C/C++, 225 lines
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processing/src/library/gkg-processing-io/TypedVolumeReaderProcess.h, C/C++, 38 lines
processing/src/library/gkg-processing-io/VectorAsciiItemReader.h, C/C++, 41 lines
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processing/src/library/gkg-processing-io/VectorItemIOFactory.h, C/C++, 37 lines
processing/src/library/gkg-processing-machinelearning/MachineLearningCrossValidation.h, C/C++, 27 lines
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processing/src/library/gkg-processing-machinelearning/MachineLearningProblem.h, C/C++, 53 lines
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processing/src/library/gkg-processing-machinelearning/MachineLearningScaler.h, C/C++, 48 lines
processing/src/library/gkg-processing-machinelearning/MachineLearningSelector.h, C/C++, 48 lines
processing/src/library/gkg-processing-machinelearning/PredictScaler.h, C/C++, 34 lines
processing/src/library/gkg-processing-machinelearning/SupportVectorMachine.h, C/C++, 88 lines
processing/src/library/gkg-processing-machinelearning/SupportVectorMachineImplementation.h, C/C++, 63 lines
processing/src/library/gkg-processing-machinelearning/TrainScaler.h, C/C++, 32 lines
processing/src/library/gkg-processing-mask/AutomaticThresholdMask.h, C/C++, 52 lines
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processing/src/library/gkg-processing-mask/MaskPartitioner.h, C/C++, 74 lines
processing/src/library/gkg-processing-mask/MorphoFilledMask.h, C/C++, 54 lines
processing/src/library/gkg-processing-mesh/BresenhamAlgorithm.h, C/C++, 82 lines
processing/src/library/gkg-processing-mesh/ComputerGraphicsImplementationFactory.h, C/C++, 38 lines
processing/src/library/gkg-processing-mesh/ComputerGraphicsSelector.h, C/C++, 48 lines
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processing/src/library/gkg-processing-mesh/CylinderCollision3d.h, C/C++, 40 lines
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processing/src/library/gkg-processing-mesh/EvolvingMeshCache.h, C/C++, 52 lines
processing/src/library/gkg-processing-mesh/GridGenerator.h, C/C++, 50 lines
processing/src/library/gkg-processing-mesh/IntersectionSet.h, C/C++, 80 lines
processing/src/library/gkg-processing-mesh/MeshAccumulator.h, C/C++, 66 lines
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processing/src/library/gkg-processing-mesh/MeshDeformation.h, C/C++, 49 lines
processing/src/library/gkg-processing-mesh/MeshFactory.h, C/C++, 258 lines
processing/src/library/gkg-processing-mesh/MeshOffsetAdder.h, C/C++, 31 lines
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processing/src/library/gkg-processing-mesh/MeshScaler.h, C/C++, 43 lines
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processing/src/library/gkg-processing-mesh/MeshSlicer.h, C/C++, 246 lines
processing/src/library/gkg-processing-mesh/MeshSurfaceComputer.h, C/C++, 33 lines
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processing/src/library/gkg-processing-mesh/MeshTransformer.h, C/C++, 33 lines
processing/src/library/gkg-processing-mesh/MeshTransformer_i.h, C/C++, 99 lines
processing/src/library/gkg-processing-mesh/PointCloudAlphaShapeMesher.h, C/C++, 57 lines
processing/src/library/gkg-processing-mesh/PointCloudAlphaShapeMesherImplementation.h, C/C++, 56 lines
processing/src/library/gkg-processing-mesh/PolygonCache.h, C/C++, 54 lines
processing/src/library/gkg-processing-mesh/PolygonIntersection2d.h, C/C++, 25 lines
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processing/src/library/gkg-processing-mesh/QuickConvexHull.h, C/C++, 60 lines
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processing/src/library/gkg-processing-mesh/RayBoxIntersection.h, C/C++, 51 lines
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processing/src/library/gkg-processing-mesh/SinusVertexEvolutionFunction.h, C/C++, 46 lines
processing/src/library/gkg-processing-mesh/StaticVertexEvolutionFunction.h, C/C++, 29 lines
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processing/src/library/gkg-processing-mesh/VertexEvolutionFunctionFactory.h, C/C++, 44 lines
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processing/src/library/gkg-processing-morphology/DanielssonDistanceMapper.h, C/C++, 62 lines
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processing/src/library/gkg-processing-numericalanalysis/CubicSplineTransform1d.h, C/C++, 43 lines
processing/src/library/gkg-processing-numericalanalysis/DensityBasedSpatialClustering.h, C/C++, 72 lines
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repository limit reached (2,000 files or 30 MB): the rest is at the source (710 files)
LICENSE, License, 160 lines

At the source: framagit.org/cpoupon/gkg

neurospin/point-cloud-pattern-mining

License: none: the authors keep all their rights

State: the link answers, verified on 30 September 2026

Evidence: files inventoried

Commit: 60c0f9aa56b59e83ed4b72d9dbd9f2c36363bd53, 10 July 2023

Languages: Python (27)

Size: 37 files, 27 scripts

Software Heritage: archived

Found in: “Data and Code Availability”

Holds: README, environment (setup.py), tests, documentation

Not found: license file, CITATION.cff, continuous integration

Tools: NumPy (17 files), pandas (11 files), SciPy (5 files), Matplotlib (2 files), scikit-learn (2 files)

Availability: 1 check, the latest on 30 September 2026: the link answers

30 September 2026: the link answers

28 files

pcpm/__init__.py, Python, 20 lines
pcpm/aims_utils.py, Python, 16 lines
pcpm/average/__init__.py, Python, 1 line
pcpm/average/core.py, Python, 193 lines
pcpm/cli/__init__.py, Python, 1 line
pcpm/cli/dist.py, Python, 90 lines
pcpm/cli/distributed/distance.py, Python, 90 lines
pcpm/distance/__init__.py, Python, 4 lines
pcpm/distance/core.py, Python, 233 lines
pcpm/distance/functions.py, Python, 182 lines
pcpm/distance/libpointmatcher.py, Python, 348 lines, 1 match
pcpm/embedding.py, Python, 80 lines
pcpm/files_utils.py, Python, 129 lines
pcpm/folder_operations.py, Python, 112 lines
pcpm/info.py, Python, 52 lines
pcpm/isomap/__init__.py, Python, 1 line
pcpm/isomap/isomap_sklearn.py, Python, 116 lines
pcpm/moving_averages_tools.py, Python, 178 lines
pcpm/plot.py, Python, 112 lines
pcpm/recipes/__init__.py, Python, 7 lines
pcpm/recipes/clusters.py, Python, 209 lines
pcpm/recipes/io.py, Python, 89 lines
pcpm/recipes/isomap.py, Python, 32 lines
pcpm/transform.py, Python, 229 lines
pcpm_tests/Icp.py, Python, 88 lines
pcpm_tests/test_distances.py, Python, 53 lines
setup.py, Python, 27 lines
README.md, Text, 709 lines

At the source: github.com/neurospin/point-cloud-pattern-mining

Zenodo 7253494

License: other-open

State: the link answers, verified on 30 September 2026

Evidence: files inventoried

Size: 1 file

Software Heritage: not checked

Found in: the references

Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation

Tools: NumPy (17 files), pandas (11 files), SciPy (4 files), Matplotlib (2 files), scikit-learn (2 files)

Availability: 1 check, the latest on 30 September 2026: the link answers (HTTP 200)

30 September 2026: the link answers (HTTP 200)

28 files

pcpm/__init__.py, Python, 20 lines
pcpm/aims_utils.py, Python, 16 lines
pcpm/average/__init__.py, Python, 1 line
pcpm/average/core.py, Python, 189 lines
pcpm/cli/__init__.py, Python, 1 line
pcpm/cli/dist.py, Python, 90 lines
pcpm/cli/distributed/distance.py, Python, 90 lines
pcpm/distance/__init__.py, Python, 4 lines
pcpm/distance/core.py, Python, 233 lines
pcpm/distance/functions.py, Python, 182 lines
pcpm/distance/libpointmatcher.py, Python, 348 lines
pcpm/embedding.py, Python, 80 lines
pcpm/files_utils.py, Python, 129 lines
pcpm/folder_operations.py, Python, 112 lines
pcpm/info.py, Python, 52 lines
pcpm/isomap/__init__.py, Python, 1 line
pcpm/isomap/isomap_sklearn.py, Python, 116 lines
pcpm/moving_averages_tools.py, Python, 178 lines
pcpm/plot.py, Python, 112 lines
pcpm/recipes/__init__.py, Python, 7 lines
pcpm/recipes/clusters.py, Python, 209 lines
pcpm/recipes/io.py, Python, 89 lines
pcpm/recipes/isomap.py, Python, 32 lines
pcpm/transform.py, Python, 225 lines
pcpm_tests/Icp.py, Python, 88 lines
pcpm_tests/test_distances.py, Python, 53 lines
setup.py, Python, 27 lines
README.md, Text, 707 lines

At the source:

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

3 repositories of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
2,053 scripts, each with its path and the digest of its content;
7 matches between paragraphs of the paper and lines of the code (method lexical-v1);
neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

Datasets cited

zenodo:7147789, at Zenodo; found in the references
zenodo:7308510, at Zenodo; found in the references

Data and Code Availability

The chimpanzee DWMB atlas used in this study is available on the Zenodo platform at https://doi.org/10.5281/zenodo.7147789. The human DWMB is available on the Zenodo platform at https://doi.org/10.5281/zenodo.7308510. The results of the registration between human and chimpanzee as well as transformation files are available on zenodo at https://doi.org/10.5281/zenodo.13935442. The construction of atlases is based on the analysis of the anatomical and diffusion MRI dataset using the tractography and fiber clustering tools available from the Ginkgo toolbox (Ginkgo Team, BAOBAB, NeuroSpin, Paris-Saclay University, CNRS, CEA, https://framagit.org/cpoupon/gkg). The isomap algorithm used for this analysis is given on the neurospin/github repository: https://github.com/neurospin/point-cloud-pattern-mining.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 30 September 2026: the first record

Recorded: type, language, journal, volume, pages, dates, 9 authors, 5 keywords, 78 references.

Cite

This paper

Chauvel, M., Uszynski, I., Pascucci, M., Leprince, Y., Herlin, B., Rivière, D., Mangin, J.-F., Hopkins, W. D., & Poupon, C. (2026). Evolutionary signatures in deep white matter architecture: A comparative study of humans and chimpanzees. Imaging neuroscience (Cambridge, Mass.), 4, IMAG.a.1154. https://doi.org/10.1162/imag.a.1154

BibTeX

@article{chauvel2026evolutionary, author = {Chauvel, Maëlig and Uszynski, Ivy and Pascucci, Marco and Leprince, Yann and Herlin, Bastien and Rivière, Denis and Mangin, Jean-François and Hopkins, William D and Poupon, Cyril}, title = {{Evolutionary signatures in deep white matter architecture: A comparative study of humans and chimpanzees}}, journal = {Imaging neuroscience (Cambridge, Mass.)}, year = {2026}, month = mar, volume = {4}, pages = {IMAG.a.1154}, publisher = {MIT Press}, issn = {2837-6056}, doi = {10.1162/imag.a.1154}, url = {https://doi.org/10.1162/imag.a.1154}, pmid = {41836920}, pmcid = {PMC12980544} }

RIS

TY - JOUR AU - Chauvel, Maëlig AU - Uszynski, Ivy AU - Pascucci, Marco AU - Leprince, Yann AU - Herlin, Bastien AU - Rivière, Denis AU - Mangin, Jean-François AU - Hopkins, William D AU - Poupon, Cyril TI - Evolutionary signatures in deep white matter architecture: A comparative study of humans and chimpanzees T2 - Imaging neuroscience (Cambridge, Mass.) J2 - Imaging Neurosci (Camb) PY - 2026 DA - 2026/03/11 VL - 4 SP - IMAG.a.1154 SN - 2837-6056 PB - MIT Press DO - 10.1162/imag.a.1154 UR - https://doi.org/10.1162/imag.a.1154 LA - en ER -

CSL-JSON

{ "id": "10.1162/imag.a.1154", "type": "article-journal", "title": "Evolutionary signatures in deep white matter architecture: A comparative study of humans and chimpanzees", "container-title": "Imaging neuroscience (Cambridge, Mass.)", "author": [ { "family": "Chauvel", "given": "Maëlig" }, { "family": "Uszynski", "given": "Ivy" }, { "family": "Pascucci", "given": "Marco" }, { "family": "Leprince", "given": "Yann" }, { "family": "Herlin", "given": "Bastien" }, { "family": "Rivière", "given": "Denis" }, { "family": "Mangin", "given": "Jean-François" }, { "family": "Hopkins", "given": "William D" }, { "family": "Poupon", "given": "Cyril" } ], "container-title-short": "Imaging Neurosci (Camb)", "volume": "4", "page": "IMAG.a.1154", "DOI": "10.1162/imag.a.1154", "PMID": "41836920", "PMCID": "PMC12980544", "ISSN": "2837-6056", "publisher": "MIT Press", "URL": "https://doi.org/10.1162/imag.a.1154", "language": "en", "issued": { "date-parts": [ [ 2026, 3, 11 ] ] } }

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Evolutionary signatures in deep white matter architecture: A comparative study of humans and chimpanzees.

Code ↔ Paper

Paper

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Overview

Abstract

Repositories

framagit.org/cpoupon/gkg

neurospin/point-cloud-pattern-mining

Zenodo 7253494

Tracing map

Data

Datasets cited

Data and Code Availability

Versions

Version 1, 30 September 2026: the first record

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