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Activation mapping in multi-center retrospective rat sensory-evoked functional MRI datasets using a unified pipeline.

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grandjeanlab/multirat_se

License: Apache-2.0
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Zenodo 3877179

License: other-open
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brkraw/bruker

License: GPL-3.0
State: the link answers
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Tools found in the code: AFNI, FreeSurfer, FSL, Matplotlib, NiBabel, Nilearn, NumPy, pandas, Pillow, Plotly, scikit-learn, SciPy, seaborn, SimpleITK

Overview

Authors: Marie E. Galteau, Margaret Broadwater, Yi Chen, Gabriel Desrosiers-Gregoire, Rita Gil, Johannes Kaesser, Eugene Kim, Pervin Kıryağdı, Henriette Lambers, Yanyan Y. Liu, Xavier López-Gil, Eilidh MacNicol, Parastoo Mohebkhodaei, Ricardo X.N. De Oliveira, Carolina A. Pereira, Henning M. Reimann, Alejandro Rivera-Olvera, Erwan Selingue, Nikoloz Sirmpilatze, Sandra Strobelt
and 31 other authorsAkira Sumiyoshi, Channelle Tham, Raul Tudela, Roël M. Vrooman, Isabel Wank, Yongzhi Zhang, Wessel A. van Engelenburg, Jürgen Baudewig, Susann Boretius, Diana Cash, M. Mallar Chakravarty, Kai-Hsiang Chuang, Luisa Ciobanu, Gabriel A. Devenyi, Cornelius Faber, Andreas Hess, Judith R. Homberg, Ileana O. Jelescu, Carles Justicia, Ryuta Kawashima, Thoralf Niendorf, Tom W.J. Scheenen, Noam Shemesh, Guadalupe Soria, Nick Todd, Lydia Wachsmuth, Xin Yu, Baogui B. Zhang, Yen-Yu Ian Shih, Sung-Ho Lee, Joanes Grandjean
Journal: Imaging neuroscience (Cambridge, Mass.)
Published: 22 September 2025
Type: Research article
Status: code verified (how the code is found and verified)
DOI: 10.1162/imag.a.157
License: CC BY
Institutions: Radboud University Nijmegen (Netherlands), Donders Institute for Brain, Cognition and Behaviour (Netherlands), University of North Carolina at Chapel Hill (United States), Max Planck Institute for Biological Cybernetics (Germany), Douglas Mental Health University Institute (Canada), McGill University (Canada), Champalimaud Foundation (Portugal), Friedrich-Alexander-Universität Erlangen-Nürnberg (Germany), King's College London (United Kingdom), University of Münster (Germany), University Hospital Münster (Germany), Chinese Academy of Sciences (China), Institute of Automation (China), Consorci Institut D'Investigacions Biomediques August Pi I Sunyer (Spain), Max Delbrück Center (Germany), Commissariat à l'Énergie Atomique et aux Énergies Alternatives (France), CEA Paris-Saclay - Etablissement de Saclay (France), CEA Paris-Saclay (France), German Primate Center (Germany), Nanoscale Microscopy and Molecular Physiology of the Brain Cluster of Excellence 171 — DFG Research Center 103 (Germany), Sainsbury Wellcome Centre (United Kingdom), University College London (United Kingdom), University of Göttingen (Germany), Tohoku University (Japan), National Institutes for Quantum Science and Technology (Japan), Biomedical Research Networking Center in Bioengineering, Biomaterials and Nanomedicine (Spain), Centro de Investigación Biomédica en Red (Spain), Universitat de Barcelona (Spain), Brigham and Women's Hospital (United States), The University of Queensland (Australia), Centre Hospitalier Universitaire Vaudois (Switzerland), Consejo Superior de Investigaciones Científicas (Spain), Institut d'Investigacions Biomèdiques de Barcelona (Spain), Charité – Universitätsmedizin Berlin (Germany), Erwin L. Hahn Institute for Magnetic Resonance Imaging (Germany), Radboud University Medical Center (Netherlands), University of Duisburg-Essen (Germany), Harvard University (United States), Massachusetts General Hospital (United States), Athinoula A. Martinos Center for Biomedical Imaging (United States)
Categories: fMRI (modality), rat (organism), methods / tools (subfield)

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