rat

Organism: 182 papers with a page, 83 of them with their authors' code.

Monday, 28 September 2026 (1 paper)

[1] Code ↔ Paper doi:10.7554/elife.110011 [paper, repository]

Tau hyperphosphorylation impairs cooperative binding to microtubules and perturbs organelle trafficking in neurons.

Journal: eLife

Authors' code: danielbeaudet-McGill/scripts_data_Beaudet_Berger_Hendricks_eLife_2026 (MIT)

Status: code verified, 1 file readable

Saturday, 26 September 2026 (1 paper)

[2] Code ↔ Paper doi:10.1007/s00429-026-03166-w [paper, repository]

Autoencoders for unsupervised analysis of rat myeloarchitecture.

Journal: Brain structure & function

Authors' code: UEF-Multiscale-Imaging/AE-and-GMM-myelin-stained-tissue (MIT)

Status: code verified, 53 files readable, 6 matches

Monday, 21 September 2026 (1 paper)

[3] Code ↔ Paper doi:10.7554/elife.106554 [paper, repository]

Enhanced tactile coding in rat neocortex under darkness.

Journal: eLife

Authors' code: UT-yakusaku/Yamashiro-eLife-2024 (MIT)

Status: code verified, 9 files readable, 2 matches

Wednesday, 16 September 2026 (1 paper)

[4] doi:10.1186/s40035-026-00577-x [paper, data]

Brain region-resolved pharmacodynamics of an antisense oligonucleotide targeting human SNCA 3'UTR in BAC-hSNCA rats.

Journal: Translational neurodegeneration

Status: data only, 3 datasets cited

Tuesday, 15 September 2026 (1 paper)

[5] Code ↔ Paper doi:10.7554/elife.109571 [paper, repository]

Rank- and threat-dependent social modulation of innate defensive behaviors.

Journal: eLife

Authors' code: YatangLiLab/Gao-2026-rank-threat-soical-modulation (Apache-2.0)

Status: code verified, 3 files readable

Sunday, 13 September 2026 (1 paper)

[6] doi:10.1113/jp290864 [paper, data]

Heart failure-induced reprogramming of salt-evoked neurovascular coupling in the rat hypothalamus.

Journal: The Journal of physiology

Status: data only, 1 dataset cited

Friday, 11 September 2026 (1 paper)

[7] doi:10.1126/sciadv.aeg2327 [paper, data]

Top-down corticostriatal control of adaptive restraint during motivational conflict.

Journal: Science advances

Status: data only, 1 dataset cited

Thursday, 10 September 2026 (1 paper)

[8] Code ↔ Paper doi:10.1371/journal.pcbi.1013752 [paper, repository]

Calmodulin controls spatial and temporal specificity of calcium-induced calcium release.

Journal: PLoS computational biology

Authors' code: asiaszmek/stochastic_ER (CC-BY-4.0)

Status: code verified, 39 files readable, 2 matches

Monday, 7 September 2026 (2 papers)

[9] doi:10.1186/s13062-026-00912-2 [paper, data]

Integrated analysis of single-cell transcriptome identifies a glial-neurovascular signaling trajectory in brain repair after ischemia.

Journal: Biology direct

Status: data only, 1 dataset cited

[10] Code ↔ Paper doi:10.7554/elife.110795 [paper, repository]

REM sleep prefrontal high-frequency oscillation chains mediate distinct cortical - hippocampal reactivation patterns compared to NREM sleep.

Journal: eLife

Authors' code: JadhavLab/REMHFOs (MIT)

Status: code verified, 41 files readable, 34 matches

Friday, 4 September 2026 (2 papers)

[11] Code ↔ Paper doi:10.1007/s00429-026-03172-y [paper, repository]

Differential effects of acute, chronic, and social defeat stress on microglial morphology in the basolateral and central amygdala, and the medial and lateral habenula.

Journal: Brain structure & function

Authors' code: Jorvalgl/Thresholderer (GPL-3.0)

Status: code verified, 2 files readable

[12] doi:10.7554/elife.109159 [paper, data]

Differential locus coeruleus-hippocampus interactions during offline states.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 3 September 2026 (1 paper)

[13] Code ↔ Paper doi:10.1038/s41467-026-77318-1 [paper, repository]

Offline generative network reconfiguration guides insight-like accelerated learning by assimilation into schema in rats.

Journal: Nature communications

Authors' code: GDYlab/GDYlabcode (no license)

Status: code verified, 200 files readable, 7 matches

Wednesday, 2 September 2026 (1 paper)

[14] Code ↔ Paper doi:10.1038/s41467-026-77302-9 [paper, repository]

Identification and validation of central amygdala FGFR1 as a therapeutic target for alcohol use disorder using single-nucleus sequencing in rats.

Journal: Nature communications

Authors' code: leohog/Fgfr1_analysis (MIT)

Status: code verified, 3 files readable, 4 matches

Tuesday, 1 September 2026 (4 papers)

[15] Code ↔ Paper doi:10.1111/jnc.70551 [paper, repository]

Synaptobrevin-2 Containing Extracellular Vesicles Are Rapidly Incorporated Into Mammalian Neurons via a Dynamin-Dependent Pathway.

Journal: Journal of neurochemistry

Authors' code: melikelakadamyali/StormAnalysisSoftware (GPL-3.0)

Status: code verified, 243 files readable, 2 matches

[16] Code ↔ Paper doi:10.1111/jne.70257 [paper, repository]

A symmetric systemic challenge elicits a right-biased response mediated by vasopressin signaling.

Journal: Journal of neuroendocrinology

Authors' code: YaromirKo/biostatistics-wd (MIT)

Status: code verified, 25 files readable, 4 matches

[17] Code ↔ Paper doi:10.1007/s12021-026-09814-0 [paper, repository]

Application of Machine Learning Models to Identify Differences in Neural Electrophysiological Properties Across Estrous Cycle Phases.

Journal: Neuroinformatics

Authors' code: doi:10.5061/dryad.k0p2ngfgm (no license), Armaan-Raina/Estrous-Phase-Classification (MIT)

Status: code verified, 3 files readable, 4 matches

[18] Code ↔ Paper doi:10.1093/sleep/zsag168 [paper, repository]

Deltas' and spindles' cross-area synchronization and ripple subtypes.

Journal: Sleep

Authors' code: genzellab/RGS14 (GPL-3.0), genzellab/RGS14_clusters (no license)

Status: code verified, 194 files readable, 15 matches

Saturday, 29 August 2026 (1 paper)

[19] doi:10.1038/s41467-026-77240-6 [paper]

Prefrontal-thalamic goal states organize spatially aligned hippocampal maps.

Journal: Nature communications

Status: code on request

Friday, 28 August 2026 (1 paper)

[20] doi:10.1117/1.jbo.31.8.086007 [paper]

Time-resolved laser speckle contrast imaging (TR-LSCI) of cerebral blood flow response to intracranial pressure elevation.

Journal: Journal of biomedical optics

Status: code on request

Monday, 24 August 2026 (1 paper)

[21] doi:10.1371/journal.pone.0355984 [paper]

An integrated systems biology and machine learning framework for identifying potential biomarkers and pathways in autism spectrum disorder.

Journal: PloS one

Status: data only

Sunday, 23 August 2026 (1 paper)

[22] doi:10.1113/jp291436 [paper]

Structural determinants of quadriceps atrophy following ACL injury: Evidence for fibre atrophy without fibre loss or overt peripheral denervation.

Journal: The Journal of physiology

Status: code on request

Friday, 21 August 2026 (2 papers)

[23] doi:10.3390/nu18162744 [paper, data]

<i>Cistanche tubulosa</i> (Schrenk) Wight Extract Ameliorates Learning and Spatial Memory Abilities in High-Altitude Hypobaric Hypoxia Rats.

Journal: Nutrients

Status: data only, 1 dataset cited

[24] Code ↔ Paper doi:10.1038/s41467-026-76939-w [paper, repository]

HIPPIE: a generative model for electrophysiological analysis across species, technologies, and modalities.

Journal: Nature communications

Authors' code: huggingface.co/jesusgf23/hippie (apache), braingeneers/HIPPIE (BSD-3-Clause), JesusGF1/hippie_benchmarking_release (BSD-3-Clause), EricKenjiLee/PhysMAP_Manuscript (no license), Haansololfp/NEMO_ICLR (MIT), Zenodo 21707907 (BSD-3-Clause)

Status: code verified, 253 files readable, 40 matches

Thursday, 20 August 2026 (1 paper)

[25] doi:10.1038/s41467-026-76831-7 [paper, data]

Structural origins of species-specific differences in TRPV2 activation.

Journal: Nature communications

Status: data only, 2 datasets cited

Wednesday, 19 August 2026 (1 paper)

[26] doi:10.3389/fncel.2026.1894226 [paper, data]

Boldine treatment prevents chronic cognitive impairment and exaggerated fear learning in rats exposed to repetitive low-level blast injury.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

Friday, 14 August 2026 (1 paper)

[27] doi:10.1038/s41588-026-02709-5 [paper, data]

PLCG2 downregulation impairs synaptic function and increases Alzheimer's disease hallmarks in neuronal cultures.

Journal: Nature genetics

Status: data only, 3 datasets cited

Thursday, 13 August 2026 (1 paper)

[28] Code ↔ Paper doi:10.1371/journal.pone.0355739 [paper, repository]

The effects of blast-induced traumatic brain injury on brain cellular mechanics and differentiation.

Journal: PloS one

Authors' code: kaggle.com/datasets/masudnabila (no license)

Status: dead link

Wednesday, 12 August 2026 (2 papers)

[29] Code ↔ Paper doi:10.1523/jneurosci.2001-25.2026 [paper, repository]

Dynamics of Dentate Gyrus Place Cells and Dentate Spikes during Spatial and Nonspatial Changes in Environments.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Julie-Fabre/bombcell (GPL-3.0), ColginLab/Demetrovich_Colgin_2026 (no license), ColginLab/ColginLabCode (no license)

Status: code verified, 1,503 files readable, 19 matches

[30] doi:10.3389/fpsyt.2026.1828806 [paper, data]

Integrative multi-omics and machine learning analysis identifies candidate biomarkers associated with mitochondrial quality control in major depressive disorder.

Journal: Frontiers in psychiatry

Status: data only, 2 datasets cited

Tuesday, 11 August 2026 (4 papers)

[31] Code ↔ Paper doi:10.1016/j.ebiom.2026.106418 [paper, repository]

Corticostriatal glutamate mechanisms underlying beta synchrony and motor deficits via striatal NMDA receptors in Parkinson's disease.

Journal: EBioMedicine

Authors' code: ziruiwang0836/striatum-microcircuit (no license)

Status: code verified, 82 files readable

[32] doi:10.1038/s41467-026-75877-x [paper, data]

Structure of NHE6 and its lipid-mediated interactions regulating endosomal pH.

Journal: Nature communications

Status: data only, 2 datasets cited

[33] doi:10.3389/fimmu.2026.1700109 [paper]

Integrated machine learning and transcriptomics reveal immune infiltration-related orthologous transcription genes in cerebral ischemic injury.

Journal: Frontiers in immunology

Status: data only

[34] doi:10.3390/cells15161445 [paper, data]

Utility of the Recombinase Driver CX3CR1-ERT2 Rat Strain in Nicotine Self-Administration.

Journal: Cells

Status: data only, 1 dataset cited

Friday, 7 August 2026 (3 papers)

[35] Code ↔ Paper doi:10.1371/journal.pcbi.1014585 [paper, repository]

Decoding behavior with minimal and interpretable agent models.

Journal: PLoS computational biology

Authors' code: giorgionicoletti/FSC-inference-MAPSO (no license)

Status: code verified, 19 files readable, 6 matches

[36] Code ↔ Paper doi:10.3389/fnbeh.2026.1895371 [paper, repository]

Discrete and differentiated encoding of distinct components of spatial experience occurs within the proximodistal subfields of the dorsoventral axis of the hippocampus.

Journal: Frontiers in behavioral neuroscience

Authors' code: stardist/stardist (BSD-3-Clause)

Status: code verified, 59 files readable, 1 match

[37] doi:10.1016/j.cdnut.2026.109508 [paper]

Maternal Diet Enrichment in <i>n</i>-3 Long-Chain Polyunsaturated Fatty Acids during Pregnancy and Lactation Improves Their Transfer from the Mother to the Offspring and Counterbalances High-Fat Diet-Induced Alterations in a Sex-Dependent Manner in Rats.

Journal: Current developments in nutrition

Status: code on request

Tuesday, 4 August 2026 (3 papers)

[38] doi:10.1007/s11033-026-12462-x [paper, data]

METTL3-dependent m⁶A maturation of miR-140-3p contributes to hippocampal neuronal apoptosis through the OTX2/Wnt/β-catenin axis under chronic stress.

Journal: Molecular biology reports

Status: data only, 1 dataset cited

[39] doi:10.7554/elife.102189 [paper, data]

Thalamo-accumbal circuit adaptations following extended oxycodone abstinence.

Journal: eLife

Status: data only, 1 dataset cited

[40] doi:10.1186/s40478-026-02388-7 [paper, data]

Galectin-3 is elevated in Müller glia in human glaucomatous eyes and ocular hypertensive rat eyes and associated with phagocytosing states.

Journal: Acta neuropathologica communications

Status: data only, 3 datasets cited

Monday, 3 August 2026 (1 paper)

[41] doi:10.1038/s41467-026-75890-0 [paper, data]

Serotonergic psychedelics induce distinct patterns of metabolic activity and covariance within biologically informed rat brain networks.

Journal: Nature communications

Status: data only, 1 dataset cited

Saturday, 1 August 2026 (3 papers)

[42] doi:10.1002/cns.71075 [paper, data]

Neuroprotective Role of E3 Ubiquitin Ligase TRIM2 in Parkinson's Disease: Attenuation of Oxidative Stress and Apoptosis via Promoting ELAVL1 Ubiquitination.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[43] Code ↔ Paper doi:10.1002/brb3.71654 [paper, repository]

HIF-1α and HIF-2α Are Upregulated in the Hippocampus but Not in the Medial Prefrontal Cortex in Experimental PTSD.

Journal: Brain and behavior

Authors' code: DotardOneClick/PTSD_hypoxia_markers (MIT)

Status: code verified, 5 files readable, 4 matches

[44] Code ↔ Paper doi:10.1210/endocr/bqag084 [paper, repository]

The EDC mixture "NeuroMix" alters neuroendocrine physiology, fatty food preference, and the central reward transcriptome.

Journal: Endocrinology

Authors' code: emilyhilz/NeuroMix-2026 (no license)

Status: code verified, 3 files readable, 2 matches

Wednesday, 29 July 2026 (3 papers)

[45] doi:10.7554/elife.108845 [paper, data]

Acute opioid responses are modulated by dynamic interactions of <i>Oprm1</i> and <i>Fgf12</i>.

Journal: eLife

Status: data only, 1 dataset cited

[46] Code ↔ Paper doi:10.1126/sciadv.aee8648 [paper, repository]

IoT-enabled wireless neural implant for chronic, programmable neuropharmacology and optogenetics.

Journal: Science advances

Authors' code: Zenodo 20063531 (CC-BY-4.0), jey0920/aee8648_firmware (MIT)

Status: code verified, 6 files readable

[47] Code ↔ Paper doi:10.1093/braincomms/fcag264 [paper, repository]

Elevated intron retention implicates neuroinflammation in brains of individuals with alcohol use disorder.

Journal: Brain communications

Authors' code: cpdong/IntronNeoantigen (no license)

Status: code verified, 5 files readable, 1 match

Tuesday, 28 July 2026 (1 paper)

[48] Code ↔ Paper doi:10.3389/fnins.2026.1873417 [paper, repository]

Functional brain network alterations in a rat model of dental malocclusion.

Journal: Frontiers in neuroscience

Authors' code: CoBrALab/RABIES (other)

Status: code verified, 54 files readable, 4 matches

Friday, 24 July 2026 (2 papers)

[49] Code ↔ Paper doi:10.1371/journal.pcbi.1014521 [paper, repository]

Whisker stimulation reinforces a resting-state network in the barrel cortex: Nested oscillations and avalanches.

Journal: PLoS computational biology

Authors' code: benedetta-mariani (no license)

Status: code verified

[50] Code ↔ Paper doi:10.21203/rs.3.rs-10384174/v1 [paper, repository]

Maternal separation recalibrates prefrontal mitochondrial function and protects against stress-induced negative cognitive bias

Journal: Research Square (preprint)

Authors' code: Jeff-Dalley-Github (no license)

Status: code verified

Thursday, 23 July 2026 (1 paper)

[51] Code ↔ Paper doi:10.1038/s41467-026-75837-5 [paper, repository]

A hierarchical framework for cortical and subcortical gray-matter parcellation across rodents, primates, and humans.

Journal: Nature communications

Authors' code: Zenodo 17653308 (MIT), sivaven/omniconnectmodel (MIT)

Status: code verified, 38 files readable, 22 matches

Tuesday, 21 July 2026 (1 paper)

[52] doi:10.1172/jci197345 [paper, data]

Catecholamine-mediated release of miR-133a-3p from adipocytes regulates the onset of chronic primary pain.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

Monday, 20 July 2026 (2 papers)

[53] doi:10.1016/j.bpr.2026.100278 [paper]

Information flow in cultured neuronal networks by transfer entropy.

Journal: Biophysical reports

Status: code on request

[54] Code ↔ Paper doi:10.1016/j.isci.2026.116119 [paper, repository]

Distinctly structured social behavior across three rodent strains is associated with different neural activity patterns.

Journal: iScience

Authors' code: 98rishika/Mouse-rat_analysis (no license)

Status: code verified, 6 files readable, 1 match

Friday, 17 July 2026 (3 papers)

[55] doi:10.1371/journal.pone.0351249 [paper, data]

TNF-α exacerbates postoperative plantar pain by regulating the expression of Nav1.8.

Journal: PloS one

Status: data only, 1 dataset cited

[56] doi:10.1371/journal.pone.0353399 [paper, data]

Data driven multiscale modelling of paroxysmal brain transitions using DC-coupled electrophysiological data.

Journal: PloS one

Status: data only, 1 dataset cited

[57] doi:10.3390/ijms27146373 [paper, data]

Morphological Changes in the Rat Brain in the Early Post-Resuscitation Period: The Relationship Between Hypoxia-Sensitive Immunohistochemical Markers, Hemodynamic and Acid-Base Status.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Thursday, 16 July 2026 (2 papers)

[58] doi:10.1007/s12311-026-02042-x [paper, data]

The Cerebellar Connectome.

Journal: Cerebellum (London, England)

Status: data only, 1 dataset cited

[59] doi:10.3389/fmolb.2026.1844734 [paper, data]

Discovery and validation of programmed cell death-associated key biomarker genes in ischemic stroke via ssGSEA/WGCNA and LASSO-SVM-RFE.

Journal: Frontiers in molecular biosciences

Status: code on request, 1 dataset cited

Wednesday, 15 July 2026 (1 paper)

[60] doi:10.3389/fphar.2026.1881525 [paper, data]

Pentylenetetrazole kindling impairs place recognition memory associated with suppressing proBDNF-mediated neural information flows at the hippocampal CA3-CA1 synapses.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

Monday, 13 July 2026 (2 papers)

[61] Code ↔ Paper doi:10.1073/pnas.2536535123 [paper, repository]

Orbitofrontal noradrenaline supports adaptive learning-rate adjustment in probabilistic reversal learning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 19911953 (CC-BY-4.0)

Status: code verified, 6 files readable, 1 match

[62] doi:10.1038/s41467-026-75128-z [paper, data]

Surface circumferential spinal cord recording in freely moving rodents.

Journal: Nature communications

Status: data only, 1 dataset cited

Friday, 10 July 2026 (1 paper)

[63] Code ↔ Paper doi:10.1523/eneuro.0460-25.2026 [paper, repository]

StereoPylot: An Open-Source Raspberry Pi-Based Stereotaxic Apparatus Controller with 3D Printed Components for Fully Motorized Control, Digital Display, and Customizable Features.

Journal: eNeuro

Authors' code: botterillneurolab/StereoPylot (GPL-3.0)

Status: code verified, 22 files readable, 2 matches

Thursday, 9 July 2026 (2 papers)

[64] doi:10.3389/fneur.2026.1794851 [paper, data]

Mitochondrial protein alterations in vascular dementia: evidence from Mendelian randomization, transcriptomics, and a chronic hypoperfusion model.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[65] doi:10.3390/ijms27146143 [paper]

Integrated WGCNA and Network Pharmacology Explore the Potential Mechanisms of D-Limonene in Alleviating Traumatic Brain Injury.

Journal: International journal of molecular sciences

Status: code on request

Wednesday, 8 July 2026 (1 paper)

[66] doi:10.3389/fnmol.2026.1844602 [paper, data]

Prenatal and neonatal housing conditions affect anxiety-like behavior in adulthood in rats and interact with brain-derived neurotrophic factor (BDNF) Val66Met to alter expression of BDNF and stress markers in the ventral hippocampus.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

Tuesday, 7 July 2026 (1 paper)

[67] Code ↔ Paper doi:10.1073/pnas.2533168123 [paper, repository]

Dendritic morphology and synaptic nonlinearities enhance functional complexity in human cortical neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ido4848/fci (no license)

Status: code verified, 171 files readable, 5 matches

Saturday, 4 July 2026 (2 papers)

[68] Code ↔ Paper doi:10.1038/s41467-026-74822-2 [paper, repository]

A likelihood-based method for identifying replay from spike sequences.

Journal: Nature communications

Authors' code: figshare 31942599 (CC-BY-4.0)

Status: code verified, 14 files readable, 3 matches

[69] doi:10.3390/biology15131074 [paper]

The Distinct Electrophysiological Mechanisms in the Cortico-Striatal Circuit of LID Rats.

Journal: Biology

Status: code on request

Thursday, 2 July 2026 (2 papers)

[70] doi:10.1007/s12035-026-06014-4 [paper, data]

Hypothalamus Amyloid Levels Are Associated with Early Sex-Dependent Alterations in Peripheral Energy Homeostasis in TgF344-AD Rats.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[71] doi:10.1016/j.stemcr.2026.102996 [paper, data]

Neural stem cells as potential mediators of prenatal dietary stress through epigenetic mechanisms.

Journal: Stem cell reports

Status: code on request, 1 dataset cited

Wednesday, 1 July 2026 (5 papers)

[72] Code ↔ Paper doi:10.1038/s41593-026-02365-2 [paper, repository]

Hippocampal theta sweeps indicate goal direction during navigation.

Journal: Nature neuroscience

Authors' code: changmin-yu/goal_directed_theta_sweeps_honeycomb_maze (Apache-2.0)

Status: code verified, 7 files readable, 2 matches

[73] Code ↔ Paper doi:10.1111/jnc.70502 [paper, repository]

The Converging Effects of Different Categories of Antidepressants on the Brain: A Systematic Meta-Analysis of Public Transcriptional Profiling Data From the Hippocampus and Cortex.

Journal: Journal of neurochemistry

Authors' code: evageoghegan/AntidepressantMetaAnalysis (no license)

Status: code verified, 47 files readable, 22 matches

[74] doi:10.1096/fj.202601712r [paper, data]

Time- and Region-Specific Effects of Intranasal Insulin on Oxidative Stress Parameters in the Rat Brain.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[75] Code ↔ Paper doi:10.1111/adb.70179 [paper, repository]

Transcriptional Response to Chronic Long-Access Fentanyl Self-Administration in Rat Habenula and Amygdala.

Journal: Addiction biology

Authors' code: LieberInstitute/fentanyl_rat_hb_amy (MIT), Zenodo 17573970 (CC-BY-4.0)

Status: code verified, 27 files readable, 12 matches

[76] doi:10.1111/acel.70622 [paper, data]

High Intrinsic Aerobic Capacity Is Associated With a Distinct Epigenetic and Signaling Profile in the Aged Rat Brain.

Journal: Aging cell

Status: data only, 1 dataset cited

Monday, 29 June 2026 (3 papers)

[77] Code ↔ Paper doi:10.3758/s13428-026-03096-9 [paper, repository]

Low-cost, open-source, full-stack software and Arduino-based hardware for control of commercially available animal behavior systems.

Journal: Behavior research methods

Authors' code: yadavlabs/open-source-rat-behavior (BSD-3-Clause)

Status: code verified, 35 files readable, 15 matches

[78] doi:10.1186/s12868-026-01018-1 [paper, data]

Combined maternal separation and limited bedding-nesting increase goal tracking, delay discounting, and impulsive action, and moderate sign-tracking-perseverance associations in male rats.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[79] doi:10.2147/jpr.s598801 [paper, data]

Pharmacological Inhibition of Tropomyosin Receptor Kinase B Reverses Remifentanil-Induced Postoperative Hyperalgesia and Synaptic Remodeling.

Journal: Journal of pain research

Status: data only, 1 dataset cited

Friday, 26 June 2026 (1 paper)

[80] Code ↔ Paper doi:10.1371/journal.pcbi.1014460 [paper, repository]

Quantitative anatomy and biophysical modeling of ascending neuromodulatory systems in the developing rat neocortex.

Journal: PLoS computational biology

Authors' code: Zenodo 14587678 (CC-BY-4.0)

Status: code verified, 2 files readable, 1 match

Monday, 22 June 2026 (2 papers)

[81] Code ↔ Paper doi:10.1038/s41598-026-58885-1 [paper, repository]

Forward model of rat electroencephalogram: influence of inhomogeneous and anisotropic skull.

Journal: Scientific reports

Authors' code: VlastaKoudelka/skull-leadfield (no license)

Status: code verified, 4 files readable, 2 matches

[82] doi:10.1186/s13293-026-00941-6 [paper, data]

Prenatal BPA exposure perturbs RNA-binding protein-mediated splicing regulation and synaptogenesis in the developing cerebellum in a sex-dependent manner.

Journal: Biology of sex differences

Status: data only, 10 datasets cited

Saturday, 20 June 2026 (1 paper)

[83] doi:10.1038/s41598-026-59183-6 [paper, data]

Neuron-specific expression of transmembrane protein 130 (TMEM130).

Journal: Scientific reports

Status: data only, 1 dataset cited

Wednesday, 17 June 2026 (1 paper)

[84] Code ↔ Paper doi:10.3389/fphys.2026.1827824 [paper, repository]

Shao-Ma-Zhi-Jing granules alleviate Tourette Syndrome by modulating the cAMP/PI3K/AKT/NF-κB signaling pathway, T cell differentiation, microglia, and gut microbiota.

Journal: Frontiers in physiology

Authors' code: picrust/picrust2 (GPL-3.0)

Status: code verified, 37 files readable

Monday, 15 June 2026 (2 papers)

[85] Code ↔ Paper doi:10.3389/fnins.2026.1852774 [paper, repository]

Spatial transcriptomics on an expanded dataset at the brain-electrode interface: exploration of variability and identification of novel biomarkers.

Journal: Frontiers in neuroscience

Authors' code: msureil/SpatioBiomarker (no license)

Status: code verified, 14 files readable, 4 matches

[86] Code ↔ Paper doi:10.3389/fnetp.2026.1853254 [paper, repository]

Recovery in gait and posture: a network-based approach to the assessment of rehabilitation effectiveness after spinal cord injury.

Journal: Frontiers in network physiology

Authors' code: Griga21/Moving-Composite-Analysis (no license)

Status: dead link

Friday, 12 June 2026 (2 papers)

[87] Code ↔ Paper doi:10.7554/elife.100642 [paper, repository]

Disrupted hippocampal theta-gamma coupling and spike-field coherence following experimental traumatic brain injury.

Journal: eLife

Authors' code: WolfLabPenn/Adam-eLife_2026 (MIT)

Status: code verified, 16 files readable, 4 matches

[88] doi:10.1016/j.xcrm.2026.102867 [paper]

Psilocybin restores behavior and 5-HT<sub>2A</sub> signaling while reducing microglial density after chronic traumatic brain injury in rats.

Journal: Cell reports. Medicine

Status: code on request

Thursday, 11 June 2026 (1 paper)

[89] Code ↔ Paper doi:10.1016/j.crmeth.2026.101481 [paper, repository]

A hybrid micro-ECoG for functionally targeted multi-site and multi-scale investigation.

Journal: Cell reports methods

Authors' code: dataverse.harvard.edu/dataverse/hybridecog (no license), Zenodo 20089744 (CC-BY-4.0)

Status: code verified, 24 files readable, 9 matches

Monday, 8 June 2026 (1 paper)

[90] Code ↔ Paper doi:10.1038/s42255-026-01539-3 [paper, repository]

A cross-species atlas of the dorsal vagal complex reveals neural mediators of the effects of cagrilintide on energy balance.

Journal: Nature metabolism

Authors' code: perslab/ludwig-coester-Gordian-2025 (no license)

Status: code verified, 17 files readable, 15 matches

Friday, 5 June 2026 (3 papers)

[91] Code ↔ Paper doi:10.1038/s41598-026-51531-w [paper, repository]

Multimodal age-dependent diffusion-MRI analysis of the neocortex in a rat model of cortical dysplasia.

Journal: Scientific reports

Authors' code: Biomedical-Imaging-Group/OrientationJ (GPL-3.0), paulinajv/Vertex-wise-LMM-analysis (no license), lconcha/Displasias (no license)

Status: code verified, 228 files readable, 5 matches

[92] doi:10.1007/s12035-026-05965-y [paper, data]

Microglia Attenuate Neuroinflammation After Subarachnoid Hemorrhage by Modulating Astrocyte Phenotypic Transformation via the RARα/Mafb/Msr1 Pathway.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[93] Code ↔ Paper doi:10.1016/j.isci.2026.116231 [paper, repository]

Endocytic turnover of endothelial cell-membrane proteins as a driver of rat blood-brain barrier specialization and dysfunction.

Journal: iScience

Authors' code: Molecular-Bionics-Labs/DP_GP_cluster_proteomics (BSD-3-Clause), PrincetonUniversity/DP_GP_cluster (BSD-3-Clause)

Status: code verified, 26 files readable, 2 matches

Thursday, 4 June 2026 (2 papers)

[94] Code ↔ Paper doi:10.1038/s41467-026-73896-2 [paper, repository]

The vagus nerve promotes memory in rats via nutrient-induced septo-hippocampal acetylcholine signaling.

Journal: Nature communications

Authors' code: ltiernol/Kanoski-Lab-Vagus-HPCd-ACh-manuscript-code (no license), OSF y7hup (no license)

Status: code verified, 10 files readable, 1 match

[95] Code ↔ Paper doi:10.1002/advs.202518450 [paper, repository]

A Brain-Wide Atlas of Astrocytic Oxytocin Receptors Reveals a Glial Basis for Nucleus Accumbens Modulation of Affiliative Behavior.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Team-Charlet/Denis_et_al._2026 (no license)

Status: code verified, 22 files readable, 3 matches

Wednesday, 3 June 2026 (5 papers)

[96] doi:10.1371/journal.pone.0350674 [paper, data]

Transcriptomic profile of the hippocampus of rat strains with contrasting nervous system excitability.

Journal: PloS one

Status: data only, 1 dataset cited

[97] Code ↔ Paper doi:10.1126/sciadv.adz9893 [paper, repository]

Hippocampal place cells map terrain geometry independently of behavior.

Journal: Science advances

Authors' code: Neuroesc/Hillscape_analyses (MIT)

Status: code verified, 93 files readable, 15 matches

[98] Code ↔ Paper doi:10.1186/s13195-026-02103-7 [paper, repository]

BIN1 gain-of-function in the presynaptic compartment leads to isoform-specific synaptotoxicity.

Journal: Alzheimer's research & therapy

Authors' code: yger/pre-post-drive (no license)

Status: code verified, 6 files readable

[99] Code ↔ Paper doi:10.1186/s12974-026-03890-4 [paper, repository]

Neuronal toll-like receptor-4 regulation of matrix metalloproteinase-9 activity mediates dentate circuit dysfunction after traumatic brain injury.

Journal: Journal of neuroinflammation

Authors' code: Farrell-Laboratory/Toothy (MIT)

Status: code verified, 23 files readable

[100] Code ↔ Paper doi:10.7717/peerj.21426 [paper, repository]

Integrated transcriptomic identification and validation reveal key autophagy-associated biomarkers in sleep deprivation.

Journal: PeerJ

Authors' code: tobejoy613/Autophagy-Genes-as-Sleep-Deprivation-Biomarkers (no license), supp:PMC13242190/peerj-14-21426-s009.r (no license), supp:PMC13242190/peerj-14-21426-s010.r (no license), supp:PMC13242190/peerj-14-21426-s011.r (no license), supp:PMC13242190/peerj-14-21426-s012.r (no license), supp:PMC13242190/peerj-14-21426-s013.r (no license), supp:PMC13242190/peerj-14-21426-s014.r (no license)

Status: code verified, 13 files readable, 11 matches

Tuesday, 2 June 2026 (2 papers)

[101] Code ↔ Paper doi:10.1038/s41467-026-73796-5 [paper, repository]

Cross-species transcriptomic analysis of rodent model fidelity to human mesial temporal lobe epilepsy.

Journal: Nature communications

Authors' code: joonho345/Epilepsy_Rodent_Model_RNA (no license), Zenodo 19640367 (CC-BY-4.0)

Status: code verified, 262 files readable, 34 matches

[102] doi:10.1186/s13071-026-07469-z [paper, data]

Polyunsaturated fatty acid and oxylipin profiles of Angiostrongylus cantonensis during cerebral-to-pulmonary migration illuminate parasite and host microenvironmental lipid signatures.

Journal: Parasites & vectors

Status: data only, 1 dataset cited

Monday, 1 June 2026 (4 papers)

[103] Code ↔ Paper doi:10.1093/brain/awaf435 [paper, repository]

SUR1-TRPM4 is expressed in human epilepsy and promotes neuron hyperactivity and seizures in rodents.

Journal: Brain : a journal of neurology

Authors' code: Zenodo 14908460 (MIT), brain-research-laboratory/sur1-trpm4 (MIT)

Status: code verified, 6 files readable

[104] doi:10.1093/neuonc/noag057 [paper, data]

RAC1 regulates Sonic Hedgehog-medulloblastoma growth via GLI-mediated transcription.

Journal: Neuro-oncology

Status: data only, 2 datasets cited

[105] doi:10.1002/npr2.70113 [paper, data]

Transcranial Calcium Macro-Imaging From the Auditory Cortex of Thy1-Cre-Driven GCaMP8 Transgenic Rats.

Journal: Neuropsychopharmacology reports

Status: data only, 2 datasets cited

[106] doi:10.1002/alz.71570 [paper]

Stable neuronal representations underlie cognitive resilience to Alzheimer's disease pathology.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

Sunday, 31 May 2026 (1 paper)

[107] doi:10.3390/biology15110867 [paper, data]

Differential Activation of Pro-Survival Pathways by NIX/BNIP3L: An Expression-Level-Dependent Mechanism Governing PC12 Cell Fate During H<sub>2</sub>O<sub>2</sub>-Induced Oxidative Stress.

Journal: Biology

Status: data only, 1 dataset cited

Friday, 29 May 2026 (1 paper)

[108] Code ↔ Paper doi:10.1371/journal.pbio.3003824 [paper, repository]

Flexible goal learning involves coordinated population activity in dCA1 and medial orbitofrontal cortex.

Journal: PLoS biology

Authors' code: OSF a24pj (no license)

Status: code verified, 19 files readable, 15 matches

Thursday, 28 May 2026 (4 papers)

[109] Code ↔ Paper doi:10.7554/elife.109539 [paper, repository]

Computational mechanisms for temporal integration in the anterior claustrum.

Journal: eLife

Authors' code: Kuenbae/claustrum_computation (MIT)

Status: code verified, 35 files readable, 12 matches

[110] doi:10.2147/nss.s582222 [paper, data]

Network Pharmacology-Based Elucidation of Gu's Anshen Decoction in Modulating TNF Signaling to Ameliorate Insomnia.

Journal: Nature and science of sleep

Status: data only, 1 dataset cited

[111] Code ↔ Paper doi:10.1016/j.isci.2026.116152 [paper, repository]

Integrating multidimensional nociceptive-related cortical features for unsupervised assessment of anesthesia states in rats.

Journal: iScience

Authors' code: Zenodo 20069771 (CC-BY-4.0)

Status: code verified, 10 files readable, 3 matches

[112] doi:10.3389/fnagi.2026.1766698 [paper, data]

Intracerebroventricular infusion of exercise donor plasma exosomes induces molecular changes indicating exercise-like adaptations in basal ganglia cells of older male rats.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

Wednesday, 27 May 2026 (1 paper)

[113] doi:10.1038/s41398-026-04086-3 [paper]

Hippocampal rhythm modulation via frequency-tuned trigeminal nerve stimulation.

Journal: Translational psychiatry

Status: code on request

Tuesday, 26 May 2026 (3 papers)

[114] Code ↔ Paper doi:10.1371/journal.pcbi.1013488 [paper, repository]

Evaluating place cell detection methods in Rats and Humans: Implications for cross-species spatial coding.

Journal: PLoS computational biology

Authors' code: HSNPipeline/PlaceCellMethods (no license), HSNPipeline/SimPlaceCells (MIT), HSNPipeline (no license), spiketools/spiketools (Apache-2.0), lisc-tools/lisc (Apache-2.0)

Status: code verified, 280 files readable, 2 matches

[115] Code ↔ Paper doi:10.1371/journal.ppat.1014263 [paper, repository]

PrP turnover in vivo and the time to effect of prion disease therapeutics.

Journal: PLoS pathogens

Authors' code: vallabhminikel/halflife (CC-BY-4.0)

Status: code verified, 20 files readable, 12 matches

[116] doi:10.3390/biom16060776 [paper, data]

Alterations of Cerebral Extracellular Vesicle microRNA Profiling Potentially Disrupts Brain Homeostasis Following Myocardial Infarction.

Journal: Biomolecules

Status: data only, 1 dataset cited

Monday, 25 May 2026 (1 paper)

[117] doi:10.1186/s12974-026-03852-w [paper, data]

Microglial Ccl4-Ccr5 signaling links systemic inflammation to synaptic loss and memory deficits in chronic kidney disease.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

Friday, 22 May 2026 (1 paper)

[118] Code ↔ Paper doi:10.1038/s44318-026-00806-z [paper, repository]

Interspecific diversity in the neuronal composition of the mammalian cortex arises from heterochrony in neurogenesis.

Journal: The EMBO journal

Authors' code: XD-Sheu/Rodents-temporal-scaling_2026 (no license)

Status: code verified, 12 files readable, 16 matches

Tuesday, 19 May 2026 (1 paper)

[119] doi:10.1038/s41598-026-51946-5 [paper, data]

Integration of resting-state and stimulus-fMRI uncovers reduced network flexibility in post-surgical pain.

Journal: Scientific reports

Status: data only, 1 dataset cited

Friday, 15 May 2026 (3 papers)

[120] doi:10.1172/jci190954 [paper]

Modulation of WNT and FGF18 enhances yield and subtype identity of hPSC-derived midbrain dopamine neurons.

Journal: The Journal of clinical investigation

Status: data only

[121] doi:10.1371/journal.pone.0349101 [paper, data]

Overexpression of key complement regulators in glioblastoma.

Journal: PloS one

Status: data only, 1 dataset cited

[122] doi:10.1126/sciadv.aeb7558 [paper, data]

An engineered insulin analog with dual insulin and IGF-1 receptor agonism and distinct signaling.

Journal: Science advances

Status: data only, 4 datasets cited

Thursday, 14 May 2026 (2 papers)

[123] doi:10.1186/s12951-026-04489-w [paper, data]

A versatile nanobody platform for live and super-resolution imaging of synaptic vesicle dynamics and plasticity in rodent and human neurons.

Journal: Journal of nanobiotechnology

Status: data only, 1 dataset cited

[124] doi:10.3389/fpsyg.2026.1821889 [paper, data]

Gomisin E attenuates pentobarbital-induced sleep deficits in aging-related insomnia: an <i>in vivo</i> and <i>in silico</i> study implicating cholinergic signaling.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

Wednesday, 13 May 2026 (1 paper)

[125] Code ↔ Paper doi:10.1007/s10827-026-00935-8 [paper, repository]

A biophysically grounded model of glutamatergic synaptic transmission integrating glutamate transport, receptor kinetics, and electrotonic effects.

Journal: Journal of computational neuroscience

Authors' code: antonvchizhov/EAAT-paper (no license)

Status: code verified, 5 files readable, 3 matches

Monday, 11 May 2026 (3 papers)

[126] Code ↔ Paper doi:10.1523/eneuro.0032-26.2026 [paper, repository]

Deep Learning Discriminates Seizures from Normal Brain Oscillations in the Electroencephalogram of a Rat Model of Post-traumatic Epilepsy.

Journal: eNeuro

Authors' code: dbarth-tech/ML-seizures (no license)

Status: code verified, 6 files readable

[127] doi:10.1159/000551210 [paper, data]

Maternal Infection Induces Neuronal Structure and Behavioural Alterations in Experimental Meningitis Rat Model.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[128] doi:10.3390/ph19050751 [paper, data]

Cang-Ai Volatile Oil Ameliorates Chronic Unpredictable Mild Stress-Induced Depression-like Symptoms in Rats by Regulating NT/Trk Signaling Pathway.

Journal: Pharmaceuticals (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 9 May 2026 (4 papers)

[129] doi:10.1038/s41467-026-72823-9 [paper, data]

Catecholaminergic neurons boost fibroblast osteogenic activity in keloid.

Journal: Nature communications

Status: data only, 1 dataset cited

[130] Code ↔ Paper doi:10.1038/s41598-026-51854-8 [paper, repository]

Sound-evoked auditory neurophysiological signals are a window into prodromal functional differences in a preclinical model of Alzheimer's disease.

Journal: Scientific reports

Authors' code: Zenodo 6299560 (CC-BY-4.0)

Status: code verified, 1 file readable

[131] doi:10.1186/s10020-026-01479-4 [paper, data]

Gut-brain axis: beneficial impact of Shouchella clausii spores on fructose induced dysfunction is associated with modulation of the deoxycholic acid - TGR5 pathway.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 1 dataset cited

[132] doi:10.1186/s12964-026-02748-9 [paper]

Neuroinflammation-induced downregulation of RAB7 in murine astrocytes disrupts endo-lysosomal homeostasis and induces astrogliosis.

Journal: Cell communication and signaling : CCS

Status: data only

Wednesday, 6 May 2026 (1 paper)

[133] doi:10.1038/s42003-026-10159-2 [paper, data]

Hippocampal astrocytic GAT-3 blockade impairs protein synthesis and spatial memory dynamics.

Journal: Communications biology

Status: data only, 1 dataset cited

Tuesday, 5 May 2026 (2 papers)

[134] doi:10.1007/s00429-026-03102-y [paper, data]

Selective alterations in CA1 spine morphology following dietary fructose intake.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[135] doi:10.3389/fnins.2026.1805957 [paper, data]

Treadmill training induces sex-dependent changes in hippocampal epigenetic patterns and plaque-associated microglial morphology in aged TgF344 rats.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

Saturday, 2 May 2026 (1 paper)

[136] Code ↔ Paper doi:10.1038/s42003-026-10160-9 [paper, repository]

Low-intensity pulsed ultrasound promotes peripheral nerve regeneration by alleviating Schwann cells pyroptosis.

Journal: Communications biology

Authors' code: chen-jf-96/nerve (no license)

Status: code verified, 1 file readable

Friday, 1 May 2026 (2 papers)

[137] doi:10.1093/brain/awag015 [paper, data]

Brainstem pathology in anti-IgLON5 disease: new insights into early events and tau progression.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[138] Code ↔ Paper doi:10.1002/hipo.70099 [paper, repository]

The Dentate Gyrus Grows Throughout Life Despite Turnover of Developmentally-Born Neurons.

Journal: Hippocampus

Authors' code: figshare 19319849 (CC-BY-4.0)

Status: empty repository

Wednesday, 29 April 2026 (2 papers)

[139] doi:10.1021/acschemneuro.5c00873 [paper, data]

Multi-Target Neuroprotective Compound Exhibits EAAT2-Modulating and Alzheimer's Pathology-Attenuating Effects in In Vitro and In Vivo Models.

Journal: ACS chemical neuroscience

Status: data only, 1 dataset cited

[140] Code ↔ Paper doi:10.1038/s41467-026-72167-4 [paper, repository]

The superior colliculus gates dopamine responses to conditioned stimuli in visual classical conditioning.

Journal: Nature communications

Authors' code: Yanfeng-Zhang/SC-gates-visual-classcial-conditioning (no license)

Status: code verified, 6 files readable

Tuesday, 28 April 2026 (2 papers)

[141] Code ↔ Paper doi:10.1371/journal.pcbi.1014228 [paper, repository]

Bifurcation of neural firing patterns driven by potassium dynamics and neuron-electrode geometry during high-frequency stimulation.

Journal: PLoS computational biology

Authors' code: ssssamiyahn/Bifurcation-of-neural-firing-patterns-during-high-frequency-stimulation (no license)

Status: code verified, 24 files readable

[142] Code ↔ Paper doi:10.1038/s41467-026-71887-x [paper, repository]

Magnetic resonance identification tags for ultra-flexible electrodes.

Journal: Nature communications

Authors' code: Zenodo 18917094 (CC-BY-4.0), Neurotechnology-at-ETH-Zurich/MRID-code (no license)

Status: code verified, 11 files readable, 3 matches

Saturday, 25 April 2026 (2 papers)

[143] doi:10.1038/s41467-026-71656-w [paper]

Action potential propagation in the rodent myelinated optic nerve does not trigger neurovascular coupling.

Journal: Nature communications

Status: code on request

[144] doi:10.3390/cells15090775 [paper, data]

Molecular Signatures of Maladaptive Plasticity in the Amygdala in a Rat Model of Chronic Neuropathic Pain.

Journal: Cells

Status: data only, 1 dataset cited

Friday, 24 April 2026 (2 papers)

[145] Code ↔ Paper doi:10.1002/epi4.70270 [paper, repository]

MiR-30a-5p mediates epileptogenesis in epilepsy models by targeting SOX4 to regulate the Wnt/β-catenin pathway.

Journal: Epilepsia open

Authors' code: supp:PMC13238734/EPI4-11-983-s003.r (no license)

Status: code verified, 1 file readable, 1 match

[146] doi:10.1073/pnas.2531597123 [paper, data]

Lactoperoxidase is a candidate for mediating neuromelanin formation in the human substantia nigra.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

Thursday, 23 April 2026 (1 paper)

[147] doi:10.1371/journal.pone.0346294 [paper, data]

Neural network architectures and normalization techniques for automated sleep stage classification using rodent EEG and EMG signals.

Journal: PloS one

Status: data only, 1 dataset cited

Wednesday, 22 April 2026 (6 papers)

[148] Code ↔ Paper doi:10.1523/eneuro.0560-24.2026 [paper, repository]

Different Behavioral Measures of Conditioned Magazine Activity Can Tell Different Stories about Brain Function.

Journal: eNeuro

Authors' code: sourceforge.net/mestoolbox (no license)

Status: code verified

[149] doi:10.1038/s41398-026-04034-1 [paper, data]

Behavioral and transcriptomic markers of susceptibility to escalate fentanyl intake.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[150] Code ↔ Paper doi:10.1038/s41598-026-48842-3 [paper, repository]

PLX5622 did not alter anxiety-like behaviour and showed limited microglial depletion efficacy in a spinal cord injury model in female rats.

Journal: Scientific reports

Authors' code: cdoolin/rat-apps (MIT)

Status: code verified, 10 files readable

[151] Code ↔ Paper doi:10.1038/s41586-026-10414-w [paper, repository]

Focal white matter lesions drive grey matter inflammation and synapse loss.

Journal: Nature

Authors' code: Castelo-Branco-lab/Karadottir_DBiT_2025 (no license)

Status: code verified, 6 files readable, 10 matches

[152] doi:10.1016/j.xcrm.2026.102762 [paper]

AAV-based gene therapy with modified HEXB confers lasting therapeutic benefits in GM2 gangliosidosis models.

Journal: Cell reports. Medicine

Status: code on request

[153] Code ↔ Paper doi:10.1162/netn.a.546 [paper, repository]

Cortical similarity networks in the rat brain: Postnatal development and sensitivity to early life stress.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: davidmcclure/svg-to-wkt (no license), rlsmith1/rat_MRI_similarity_networks (no license)

Status: code verified, 85 files readable, 19 matches

Tuesday, 21 April 2026 (3 papers)

[154] Code ↔ Paper doi:10.7554/elife.109883 [paper, repository]

Prior cocaine use disrupts identification of hidden states by single units and neural ensembles in orbitofrontal cortex.

Journal: eLife

Authors' code: OSF azvhm (no license)

Status: code verified, 216 files readable, 7 matches

[155] doi:10.1038/s41398-026-04039-w [paper, data]

Subanesthetic doses of ketamine to rats and monkeys rapidly increases radioligand binding in brain to phosphodiesterase-4, an indirect marker of cAMP.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[156] Code ↔ Paper doi:10.1038/s43856-026-01595-6 [paper, repository]

Non-vectorial integration of intersectional short-pulse stimulation enables enhanced deep brain modulation and effective seizure control.

Journal: Communications medicine

Authors' code: pypi.org/project/pyabf (no license)

Status: code verified

Monday, 20 April 2026 (1 paper)

[157] Code ↔ Paper doi:10.1016/j.isci.2026.115804 [paper, repository]

Aberrant prefrontal activity and arousal level correlate with action initiation and response vigor in rats.

Journal: iScience

Authors' code: etsin.fairdata.fi (no license)

Status: code verified

Sunday, 19 April 2026 (1 paper)

[158] doi:10.1186/s13041-026-01304-3 [paper, data]

Genome-wide mapping of stress-responsive lncRNA, uc.104, reveals the chromatin-mediated regulation of stress and plasticity-related genes in the hippocampus of chronic restraint rats.

Journal: Molecular brain

Status: data only, 9 datasets cited

Thursday, 16 April 2026 (1 paper)

[159] doi:10.1117/1.jbo.31.4.047001 [paper]

Noninvasive diffuse optical monitoring of cerebral blood flow and oxygenation responses to intermittent hypoxia in neonatal rats.

Journal: Journal of biomedical optics

Status: code on request

Wednesday, 15 April 2026 (3 papers)

[160] doi:10.1002/epi.70252 [paper]

Dual role of spreading depolarization in an epileptic focus.

Journal: Epilepsia

Status: code on request

[161] Code ↔ Paper doi:10.1371/journal.pone.0347319 [paper, repository]

Noninvasive detection of audiovisual superadditivity in rat brain by miniaturized SERF magnetometer.

Journal: PloS one

Authors' code: supp:PMC13082709/pone.0347319.s001.zip (no license)

Status: code verified, 1 file readable

[162] doi:10.1016/j.isci.2026.115760 [paper]

A reversible rat model of hyposmia affects respiration-linked brain oscillations and behavior.

Journal: iScience

Status: code on request

Monday, 13 April 2026 (1 paper)

[163] doi:10.3389/fnbeh.2026.1812480 [paper, data]

Oropharyngeal dysphagia and amyloid beta pathology in the TgF344-AD rat model of Alzheimer's disease.

Journal: Frontiers in behavioral neuroscience

Status: data only, 1 dataset cited

Saturday, 11 April 2026 (1 paper)

[164] doi:10.1038/s41380-026-03592-6 [paper, data]

Pyrazole-derived TRPC3 antagonist ameliorates synaptic dysfunctions and memory deficits in Alzheimer's disease models.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

Friday, 10 April 2026 (2 papers)

[165] Code ↔ Paper doi:10.1038/s41467-026-71481-1 [paper, repository]

Sex-specific increased reactivity of the PVT and prolonged PVT→CeA circuit engagement following psilocin administration.

Journal: Nature communications

Authors' code: doi:10.5061/dryad.3ffbg79qr (no license), doi:10.5061/dryad.fbg79cp7b (no license), Zenodo 10082749 (MIT)

Status: code verified, 3 files readable, 2 matches

[166] doi:10.3390/nu18081200 [paper, data]

Neurological Effects of <i>Cleistocalyx nervosum</i> var. <i>paniala</i> Berry on Hippocampal Transcriptome, Neuritogenesis, and Synaptogenesis.

Journal: Nutrients

Status: data only, 1 dataset cited

Wednesday, 8 April 2026 (2 papers)

[167] doi:10.1172/jci.insight.202639 [paper, data]

8-Aminoguanine protects against paclitaxel-induced neural degeneration and mechanical allodynia.

Journal: JCI insight

Status: code on request, 1 dataset cited

[168] doi:10.3389/fnmol.2026.1750882 [paper, data]

Exploring the molecular mechanism of dexmedetomidine in alleviating blood-brain barrier disruption in rats with cerebral ischemia reperfusion injury based on network pharmacology.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

Monday, 6 April 2026 (1 paper)

[169] doi:10.1073/pnas.2516807123 [paper, data]

AI-derived therapeutic development of a serotonin receptor-targeting drug for the treatment of opioid use disorder.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

Saturday, 4 April 2026 (1 paper)

[170] doi:10.1038/s42003-026-09951-x [paper, data]

Quantitative comparison of methods for widespread delivery of small molecules across the blood-brain barrier.

Journal: Communications biology

Status: data only, 1 dataset cited

Friday, 3 April 2026 (4 papers)

[171] Code ↔ Paper doi:10.1371/journal.pone.0346132 [paper, repository]

Analysis of cortical dysplasias using b-tensor encoding diffusion MRI in an animal model.

Journal: PloS one

Authors' code: lconcha/Displasias (no license)

Status: code verified, 126 files readable, 1 match

[172] doi:10.1038/s41398-026-04015-4 [paper]

Chemogenetic modulation of the prelimbic cortex to the nucleus accumbens core pathway reduces cocaine-induced increase of risk preference.

Journal: Translational psychiatry

Status: code on request

[173] Code ↔ Paper doi:10.1038/s41467-026-71357-4 [paper, repository]

Social reward outcompetes drug seeking dopaminergic ensembles to prevent relapse.

Journal: Nature communications

Authors' code: zhoupc/CNMF_E (GPL-3.0), zivlab/CellReg (GPL-2.0), Zenodo 18279500 (CC-BY-4.0)

Status: code verified, 328 files readable, 1 match

[174] doi:10.3390/ijms27073253 [paper, data]

S-equol Modulates T3-Induced Transcription and Neurite Outgrowth in Neuronal Cells.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Thursday, 2 April 2026 (1 paper)

[175] doi:10.1007/s12031-026-02506-z [paper, data]

Striatal Dysregulation of Angpt2 and Circadian Gene Expression in a Rotenone Rat Model of Parkinson's Disease.

Journal: Journal of molecular neuroscience : MN

Status: data only, 1 dataset cited

Wednesday, 1 April 2026 (7 papers)

[176] doi:10.1523/jneurosci.0409-25.2026 [paper, data]

The Role of Disulfide Bonds in the GluN1 Subunit in the Early Trafficking and Functional Properties of GluN1/GluN2 and GluN1/GluN3 NMDA Receptors.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 2 datasets cited

[177] doi:10.1002/cns.70834 [paper]

Wnt5a-Induced Exosomes From Bone Marrow Mesenchymal Stem Cells Promote Spinal Cord Injury Repair by Modulating Immune Cell Phenotypes and Alleviating Neuroinflammation via the NF-κB Pathway.

Journal: CNS neuroscience & therapeutics

Status: data only

[178] Code ↔ Paper doi:10.1038/s41598-026-45990-4 [paper, repository]

Multi-platform profiling reveals host- and cell -type-specific pseudorabies virus gene expression.

Journal: Scientific reports

Authors' code: Balays/Rlyeh (MIT), Balays/VALAR-PRV-MDBIO-4cell (no license)

Status: code verified, 44 files readable

[179] Code ↔ Paper doi:10.1038/s41586-026-10299-9 [paper, repository]

A µ-opioid receptor superagonist analgesic with minimal adverse effects.

Journal: Nature

Authors' code: wdunne3/Calcium-Fiber-Photometry-Analysis (no license), BonaventuraLab/fiber-photometry (no license)

Status: code verified, 21 files readable, 2 matches

[180] doi:10.1111/ejn.70486 [paper, data]

Dopamine in the Nucleus Accumbens Signals Salience of Auditory Deviance.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[181] doi:10.1002/cns.70860 [paper, data]

RFWD2 Mitigates AD-Like Cognitive Impairments via the JNK-SGK1 Signaling Pathway in Mice.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[182] Code ↔ Paper doi:10.1096/fj.202504113r [paper, repository]

Brain Proteomic Responses to Glucocorticoids and Their Relationship With Transcriptome: A Systematic Meta-Analysis.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Authors' code: Grzegorz-R-Juszczak/Scripts-for-Brain-proteomic-responses-to-GCs (MIT), Grzegorz-R-Juszczak/Protein-coding-gene-IDs-human-mouse-rat-pig (MIT)

Status: code verified, 35 files readable, 7 matches