Risk classification of internet gaming disorder based on neurobiological subtyping from impulsivity-linked resting-state functional connectivity: a longitudinal design study.
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- [1] § Methods › Deep clustering framework ↔ idec_model.py, lines 212 to 331 · score 0.53 · reconstruction loss, optimization, pretraining, IDEC, model, AE · Report a mismatch
Paper
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The authors' code
Python · 389 lines · 12 KB · no license · 1 match
- from __future__ import print_function, division
- import argparse
- import numpy as np
- from sklearn.cluster import KMeans
- from sklearn.metrics.cluster import normalized_mutual_info_score as nmi_score
- from sklearn.metrics import adjusted_rand_score as ari_score
- import torch
- import torch.nn as nn
- import torch.nn.functional as F
- from torch.nn.parameter import Parameter
- from torch.optim import Adam
- from torch.utils.data import DataLoader
- from torch.nn import Linear
- from utils import impulfc_Dataset, cluster_acc
- import matplotlib.pyplot as plt
- dsm5 = 'path_behavior_DSM'
- sub_dsm5 = np.loadtxt(dsm5, delimiter=",")
- sub_dsm5 = sub_dsm5.astype(int)
- sub_dsm5 = np.where(sub_dsm5 >= 5)
- def SSE_distance(hidden, center_cluster):
- hidden = hidden.unsqueeze(1)
- pdist = nn.PairwiseDistance(p=2)
- dis_hidden = []
- for batch in range(len(hidden)):
- dis_tmp = pdist(hidden[batch], center_cluster)
- dis_hidden.append(dis_tmp.cpu().detach().numpy())
- dis_cluster = np.apply_along_axis(np.min, axis=1, arr=dis_hidden)
- sse = np.sum(dis_cluster)
- label_current = np.argmin(dis_hidden, axis=1)
- return sse, label_current
- class AE(nn.Module):
- def __init__(self, n_enc_1, n_enc_2, n_enc_3, n_enc_4, n_enc_5, n_enc_6,
- n_dec_1, n_dec_2, n_dec_3, n_dec_4, n_dec_5, n_dec_6,
- n_input, n_z):
- super(AE, self).__init__()
- # encoder
- self.enc_1 = Linear(n_input, n_enc_1)
- self.bn1 = nn.BatchNorm1d(n_enc_1)
- self.enc_2 = Linear(n_enc_1, n_enc_2)
- self.bn2 = nn.BatchNorm1d(n_enc_2)
- self.enc_3 = Linear(n_enc_2, n_enc_3)
- self.bn3 = nn.BatchNorm1d(n_enc_3)
- self.enc_4 = Linear(n_enc_3, n_enc_4)
- self.bn4 = nn.BatchNorm1d(n_enc_4)
- self.enc_5 = Linear(n_enc_4, n_enc_5)
- self.bn5 = nn.BatchNorm1d(n_enc_5)
- self.enc_6 = Linear(n_enc_5, n_enc_6)
- self.bn6 = nn.BatchNorm1d(n_enc_6)
- self.z_layer = Linear(n_enc_6, n_z)
- # decoder
- self.dec_1 = Linear(n_z, n_dec_1)
- self.dec_bn1 = nn.BatchNorm1d(n_dec_1)
- self.dec_2 = Linear(n_dec_1, n_dec_2)
- self.dec_bn2 = nn.BatchNorm1d(n_dec_2)
- self.dec_3 = Linear(n_dec_2, n_dec_3)
- self.dec_bn3 = nn.BatchNorm1d(n_dec_3)
- self.dec_4 = Linear(n_dec_3, n_dec_4)
- self.dec_bn4 = nn.BatchNorm1d(n_dec_4)
- self.dec_5 = Linear(n_dec_4, n_dec_5)
- self.dec_bn5 = nn.BatchNorm1d(n_dec_5)
- self.dec_6 = Linear(n_dec_5, n_dec_6)
- self.dec_bn6 = nn.BatchNorm1d(n_dec_6)
- self.x_bar_layer = Linear(n_dec_6, n_input)
- def forward(self, x):
- # encoder
- enc_h1 = self.bn1(F.relu(self.enc_1(x.type(torch.float))))
- enc_h2 = F.relu(self.enc_2(enc_h1))
- enc_h3 = F.relu(self.enc_3(enc_h2))
- enc_h4 = F.relu(self.enc_4(enc_h3))
- enc_h5 = F.relu(self.enc_5(enc_h4))
- enc_h6 = self.bn6(F.relu(self.enc_6(enc_h5)))
- z = self.z_layer(enc_h6)
- # decoder
- dec_h1 = self.dec_bn1(F.relu(self.dec_1(z)))
- dec_h2 = F.relu(self.dec_2(dec_h1))
- dec_h3 = F.relu(self.dec_3(dec_h2))
- dec_h4 = F.relu(self.dec_4(dec_h3))
- dec_h5 = F.relu(self.dec_5(dec_h4))
- dec_h6 = self.dec_bn6(F.relu(self.dec_6(dec_h5)))
- x_bar = self.x_bar_layer(dec_h6)
- return x_bar, z
- class IDEC(nn.Module):
- def __init__(self,n_enc_1, n_enc_2, n_enc_3, n_enc_4, n_enc_5, n_enc_6,
- n_dec_1, n_dec_2, n_dec_3, n_dec_4, n_dec_5, n_dec_6,
- n_input,
- n_z,
- n_clusters,
- pretrain_path='data/ae_impul.pkl'):
- super(IDEC, self).__init__()
- self.alpha = 1.0
- self.pretrain_path = pretrain_path
- self.ae = AE(
- n_enc_1=n_enc_1,
- n_enc_2=n_enc_2,
- n_enc_3=n_enc_3,
- n_enc_4=n_enc_4,
- n_enc_5=n_enc_5,
- n_enc_6=n_enc_6,
- n_dec_1=n_dec_1,
- n_dec_2=n_dec_2,
- n_dec_3=n_dec_3,
- n_dec_4=n_dec_4,
- n_dec_5=n_dec_5,
- n_dec_6=n_dec_6,
- n_input=n_input,
- n_z=n_z)
- # cluster layer
- self.cluster_layer = Parameter(torch.Tensor(n_clusters, n_z))
- torch.nn.init.xavier_normal_(self.cluster_layer.data)
- def pretrain(self, path=''):
- if path == '':
- pretrain_ae(self.ae)
- # load pretrain weights
- self.ae.load_state_dict(torch.load(self.pretrain_path))
- print('load pretrained ae from', path)
- def forward(self, x):
- x_bar, z = self.ae(x)
- # cluster
- q = 1.0 / (1.0 + torch.sum(
- torch.pow(z.unsqueeze(1) - self.cluster_layer, 2), 2) / self.alpha)
- q = q.pow((self.alpha + 1.0) / 2.0)
- q = (q.t() / torch.sum(q, 1)).t()
- return x_bar, q, z
- def target_distribution(q):
- weight = q**2 / q.sum(0)
- return (weight.t() / weight.sum(1)).t()
- def pretrain_ae(model):
- plt.ion()
- fig, ax = plt.subplots()
- ax.set_xlabel('Epoch')
- ax.set_ylabel('Loss')
- ax.set_title('Loss Curve')
- train_loader = DataLoader(dataset, batch_size=64, shuffle=True)
- print(model)
- optimizer = Adam(model.parameters(), lr=args.lr)
- for epoch in range(iter_n):
- total_loss = 0.
- for batch_idx, (x, _, _) in enumerate(train_loader):
- x = x.to(device)
- x = x.type(torch.float)
- optimizer.zero_grad()
- x_bar, z = model(x)
- loss = F.mse_loss(x_bar, x)
- total_loss += loss.item()
- loss.backward()
- optimizer.step()
- ax.plot(epoch, total_loss/ (batch_idx + 1), 'bo')
- ax.figure.canvas.draw()
- ax.figure.canvas.flush_events()
- print("epoch {} loss={:.4f}".format(epoch,
- total_loss / (batch_idx + 1)))
- torch.save(model.state_dict(), args.pretrain_path)
- if total_loss/(batch_idx + 1) <0.001:
- break
- plt.ioff()
- plt.savefig('z=10/loss_curve_pretrainAE.png')
- print("model saved to {}.".format(args.pretrain_path))
- def train_idec():
- model = IDEC(
- n_enc_1=4096,
- n_enc_2=2048,
- n_enc_3=1024,
- n_enc_4=512,
- n_enc_5=128,
- n_enc_6=64,
- n_dec_1=64,
- n_dec_2=128,
- n_dec_3=512,
- n_dec_4=1024,
- n_dec_5=2048,
- n_dec_6=4096,
- n_input=args.n_input,
- n_z=args.n_z,
- n_clusters=args.n_clusters,
- alpha=1.0,
- pretrain_path=args.pretrain_path).to(device)
- model.pretrain('z=10/pretrian_model_loop.pkl')
- train_loader = DataLoader(
- dataset, batch_size=args.batch_size, shuffle=False)
- optimizer = Adam(model.parameters(), lr=args.lr)
- # cluster parameter initiate
- data = dataset.x
- y = dataset.y
- data = torch.Tensor(data).to(device)
- x_bar, hidden = model.ae(data)
- kmeans = KMeans(n_clusters=args.n_clusters)
- y_pred = kmeans.fit_predict(hidden.data.cpu().numpy())
- nmi_k = nmi_score(y_pred, y)
- print("nmi score={:.4f}".format(nmi_k))
- hidden = None
- x_bar = None
- y_pred_last = y_pred
- model.cluster_layer.data = torch.tensor(kmeans.cluster_centers_).to(device)
- model.train()
- y_all = []
- plt.ion()
- fig, ax = plt.subplots()
- ax.set_xlabel('Epoch')
- ax.set_ylabel('Loss')
- ax.set_title('Loss Curve')
- num_losses = 2
- losses = [[] for _ in range(num_losses)]
- total_losses = []
- SSE_all =[]
- totle_p = 0
- for epoch in range(400):
- if epoch % args.update_interval == 0:
- _, tmp_q, hidden = model(data)
- center_cluters = model.cluster_layer.data
- sse, y_pred = SSE_distance(hidden, center_cluters)
- SSE_all.append(sse)
- print("SSE: ", sse)
- # # update target distribution p
- tmp_q = tmp_q.data
- p = target_distribution(tmp_q)
- y_pred_last = y_pred
- if epoch % 20 == 0:
- y_all.append(y_pred_last)
- totle_loss = 0
- totle_reconstr_loss, totle_kl, totle_p = 0, 0, 0
- for batch_idx, (x, _, idx) in enumerate(train_loader):
- x = x.to(device)
- idx = idx.to(device)
- x = x.type(torch.float)
- x_bar, q, z = model(x)
- reconstr_loss = F.mse_loss(x_bar, x)
- kl_loss = F.kl_div(q.log(), p[idx.type(torch.long)])
- loss = args.gamma * kl_loss + reconstr_loss
- totle_reconstr_loss += reconstr_loss.item()
- totle_kl += kl_loss.item()
- totle_loss += loss.item()
- optimizer.zero_grad()
- loss.backward()
- optimizer.step()
- losses[0].append(totle_reconstr_loss/ (batch_idx + 1))
- losses[1].append(totle_kl/ (batch_idx + 1))
- total_losses.append(totle_loss/ (batch_idx + 1))
- ax.clear()
- for i in range(num_losses):
- ax.plot(range(epoch + 1), losses[i], label=f'Loss {i + 1}')
- ax.plot(range(epoch + 1), total_losses, label='Total Loss')
- ax.figure.canvas.draw()
- ax.figure.canvas.flush_events()
- plt.ioff()
- plt.savefig('z=10/loss_curve.png')
- print("epoch {} loss={:.4f} reconstr_loss={:.4f} kl_loss={:.6f}".format(epoch, totle_loss / (batch_idx + 1),
- totle_reconstr_loss / (batch_idx + 1),
- totle_kl / (batch_idx + 1)))
- torch.save(model.state_dict(), args.idec_path)
- return np.min(SSE_all), y_pred_last, SSE_all, center_cluters.cpu().detach().numpy(), hidden.cpu().detach().numpy()
- if __name__ == "__main__":
- parser = argparse.ArgumentParser(
- description='train',
- formatter_class=argparse.ArgumentDefaultsHelpFormatter)
- parser.add_argument('--lr', type=float, default=0.0001)
- parser.add_argument('--n_clusters', default=6, type=int)
- parser.add_argument('--batch_size', default=64, type=int)
- parser.add_argument('--n_z', default=10, type=int)
- parser.add_argument('--dataset', type=str, default='impul')
- parser.add_argument('--pretrain_path', type=str, default='data/ae_impul')
- parser.add_argument(
- '--gamma',
- default=0.5,
- type=float,
- help='coefficient of clustering loss')
- parser.add_argument('--update_interval', default=1, type=int)
- parser.add_argument('--tol', default=0.001, type=float)
- parser.add_argument('--idec_path', type=str, default='')
- args = parser.parse_args()
- args.cuda = torch.cuda.is_available()
- print("use cuda: {}".format(args.cuda))
- device = torch.device("cuda" if args.cuda else "cpu")
- if args.dataset == 'impul':
- args.pretrain_path = 'z=10/pretrian_model_loop.pkl'
- args.n_clusters = n_clusters
- args.n_input = index_number
- dataset = MnistDataset()
- print(args)
- # loop multiple time
- n = 1
- SSE_loop = []
- SSE_multi = []
- labels = np.zeros((n, sub_n))
- y_all = []
- centers = []
- hiddens = []
- for i in range(n):
- args.idec_path = 'z=10/idec_model_loop' + str(n) + '.pkl'
- min_SSE, label, SSE_all, center, hidden_last = train_idec()
- SSE_multi.append(min_SSE)
- y_all.append(label)
- labels[i, :] = label
- SSE_loop.append(SSE_all)
- centers.append(center)
- hiddens.append(hidden_last)
- print('mean SSE: ', np.mean(SSE_multi))
- print('labels', labels)
- import pandas as pd
- df = pd.DataFrame(data=labels)
- df.to_excel('labels.xlsx', index=False, header=False)
idec_model.py at commit cd260d3, no license · at the source
Overview
- School of Life Science and Technology, Xidian University, Xi’an, Shaanxi 710126 China
- School of Artificial Intelligence, Xidian University, Xi’an, Shaanxi 710126 People’s Republic of China
- Faculty of Psychology, MOE Key Laboratory of Cognition and Personality, Southwest University, Chongqing, China
- Department of Medical Imaging, Inner Mongolia People’s Hospital, Hohhot, 010017 China
- School of Automation and Electrical Engineering, Inner Mongolia University of Science and Technology, Baotou, Inner Mongolia 014010 China
- Engineering Research Center of Molecular and Neuroimaging, Ministry of Education, Xi’an, Shaanxi People’s Republic of China
- Hainan Free Trade Port Health Medical Research Institute, Baoting, Hainan 572300 People’s Republic of China
- Ganzhou City Key Laboratory of Mental Health, The Third People’s Hospital of Ganzhou City, Ganzhou, Jiangxi 341000 People’s Republic of China
Abstract
The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.
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Vic-coding-NA/IGD_risk_idec
cd260d3484df200f9d369b46be10d3d3dfd9bc06, 18 March 2026Availability: 1 check, the latest on 30 September 2026: the link answers
- 30 September 2026: the link answers
2 files
- idec_model.py, Python, 389 lines, 1 match
- utils.py, Python, 80 lines
The paper's code and data availability statement is in the Data section.
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Data
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Code and data availability statement
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IGD_risk_idec - it says that the data are available on request
Read it in the paper: doi.org/10.1186/s12916-026-04825-9.
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Version 1, 30 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 13 authors, 5 keywords, 13 MeSH terms, 3 funders, 43 references.
Cite
This paper
Wen, X., Zhao, J., Du, Z., Yu, X., Wang, D., Fu, B., Ge, M., Zhao, H., Wang, H., Li, F., Yu, D., He, Q., & Yuan, K. (2026). Risk classification of internet gaming disorder based on neurobiological subtyping from impulsivity-linked resting-state functional connectivity: a longitudinal design study. BMC medicine, 24(1), 290. https://
BibTeX
@article{wen2026risk,
author = {Wen, Xinwen and Zhao, Jiahao and Du, Zhe and Yu, Xiao and Wang, Dongcheng and Fu, Boxun and Ge, Mengjiao and Zhao, Haichao and Wang, Hongmei and Li, Fu and Yu, Dahua and He, Qinghua and Yuan, Kai},
title = {{Risk classification of internet gaming disorder based on neurobiological subtyping from impulsivity-linked resting-state functional connectivity: a longitudinal design study}},
journal = {BMC medicine},
year = {2026},
month = mar,
volume = {24},
number = {1},
pages = {290},
publisher = {BMC},
issn = {1741-7015},
doi = {10.1186/
url = {https://
pmid = {41888807},
pmcid = {PMC13141395}
}
RIS
TY - JOUR
AU - Wen, Xinwen
AU - Zhao, Jiahao
AU - Du, Zhe
AU - Yu, Xiao
AU - Wang, Dongcheng
AU - Fu, Boxun
AU - Ge, Mengjiao
AU - Zhao, Haichao
AU - Wang, Hongmei
AU - Li, Fu
AU - Yu, Dahua
AU - He, Qinghua
AU - Yuan, Kai
TI - Risk classification of internet gaming disorder based on neurobiological subtyping from impulsivity-linked resting-state functional connectivity: a longitudinal design study
T2 - BMC medicine
J2 - BMC Med
PY - 2026
DA - 2026/
VL - 24
IS - 1
SP - 290
SN - 1741-7015
PB - BMC
DO - 10.1186/
UR - https://
LA - en
ER -
CSL-JSON
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"id": "10.1186/
"type": "article-journal",
"title": "Risk classification of internet gaming disorder based on neurobiological subtyping from impulsivity-linked resting-state functional connectivity: a longitudinal design study",
"container-title": "BMC medicine",
"author": [
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"family": "Wen",
"given": "Xinwen"
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{
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"given": "Haichao"
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{
"family": "Wang",
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"given": "Qinghua"
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{
"family": "Yuan",
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],
"container-title-short":
"volume": "24",
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"DOI": "10.1186/
"PMID": "41888807",
"PMCID": "PMC13141395",
"ISSN": "1741-7015",
"publisher": "BMC",
"URL": "https://
"language": "en",
"issued": {
"date-parts": [
[
2026,
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26
]
]
}
}
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