OSCR

Whole-genome sequencing analysis reveals new susceptibility loci and structural variants associated with progressive supranuclear palsy.

A correction to this paper has been published: the notice, 39402686, from Europe PMC.

This page is built on request from the registry's record of the paper. The 6,000 most recent papers have a fuller page, built ahead of time, with the Code ↔ Paper reader, the tracing map and its validation, the record's versions, how to cite it and similar papers. This paper is older: its record, its code, its data and the requests about it are below.

Code

34 files of its code read; 5 matches between paragraphs and code. The Code ↔ Paper reader is built for the 6,000 most recent papers only: this paper's code is read at its source.

whtop/PSP-Whole-Genome-Sequencing-Analysis

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it
Tools found in the code: BCFtools, data.table, ggplot2, NumPy, pandas, SAMtools, tidyverse

Overview

Authors: Hui Wang, Timothy S. Chang, Beth A. Dombroski, Po-Liang Cheng, Vishakha Patil, Leopoldo Valiente-Banuet, Kurt Farrell, Catriona Mclean, Laura Molina-Porcel, Alex Rajput, Peter Paul De Deyn, Nathalie Le Bastard, Marla Gearing, Laura Donker Kaat, John C. Van Swieten, Elise Dopper, Bernardino F. Ghetti, Kathy L. Newell, Claire Troakes, Justo G. de Yébenes
and 42 other authorsAlberto Rábano-Gutierrez, Tina Meller, Wolfgang H. Oertel, Gesine Respondek, Maria Stamelou, Thomas Arzberger, Sigrun Roeber, Ulrich Müller, Franziska Hopfner, Pau Pastor, Alexis Brice, Alexandra Durr, Isabelle Le Ber, Thomas G. Beach, Geidy E. Serrano, Lili-Naz Hazrati, Irene Litvan, Rosa Rademakers, Owen A. Ross, Douglas Galasko, Adam L. Boxer, Bruce L. Miller, Willian W. Seeley, Vivanna M. Van Deerlin, Edward B. Lee, Charles L. White III, Huw Morris, Rohan de Silva, John F. Crary, Alison M. Goate, Jeffrey S. Friedman, Yuk Yee Leung, Giovanni Coppola, Adam C. Naj, Li-San Wang, P. S. P. genetics study group, Clifton Dalgard, Dennis W. Dickson, Günter U. Höglinger, Gerard D. Schellenberg, Daniel H. Geschwind, Wan-Ping Lee
Published: 16 August 2024
Type: Research article
Status: code verified (how the code is found and verified)
License: CC BY
Institutions: University of Pennsylvania (United States), University of California, Los Angeles (United States), Icahn School of Medicine at Mount Sinai (United States), Florey Institute of Neuroscience and Mental Health (Australia), Universitat de Barcelona (Spain), University of Saskatchewan (Canada), University of Antwerp (Belgium), University Medical Center Groningen (Netherlands), Fujirebio (Belgium) (Belgium), Emory University (United States), Netherlands Brain Bank (Netherlands), Erasmus University Rotterdam (Netherlands), Indiana University School of Medicine (United States), King's College London (United Kingdom), Universidad Autónoma de Madrid (Spain), Fundacion Centro De Investigacion De Enfermedades Neurologicas (Spain), Philipps University of Marburg (Germany), German Center for Neurodegenerative Diseases (Germany), Hygeia Hospital (Greece), Ludwig-Maximilians-Universität München (Germany), Munich Cluster for Systems Neurology (Germany), Institut d'Investigació en Ciències de la Salut Germans Trias i Pujol (Spain), Hospital Universitari Germans Trias i Pujol (Spain), Centre National de la Recherche Scientifique (France), Inserm (France), Sorbonne Université (France), Institut des Sciences Moléculaires (France), Pitié-Salpêtrière Hospital (France), Institut du Cerveau (France), Banner Sun Health Research Institute (United States), McGill University (Canada), University of California San Diego (United States), Mayo Clinic (United States), Mayo Clinic in Florida (United States), University of California, San Francisco (United States), The University of Texas Southwestern Medical Center (United States), University College London (United Kingdom), UCL Queen Square Institute of Neurology (United Kingdom), Oasis of Hope Hospital (Mexico), Del Mar College (United States), Uniformed Services University of the Health Sciences (United States)

Data

No dataset cited, and no data link found.

Contribute

The authors of this paper can claim it and correct its record, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to the registry's own machine, which answers it; your account page follows them.

Sign in with ORCID to claim this paper as one of its authors or correct its record: when the paper's metadata lists your ORCID iD, you are recognized at once. Maintainers of its code: sign in with GitHub, then claim the repository on your account page.

Add the badge to the code's README

OSCR: the badge of this paper

Authors and maintainers of this paper's code: the badge says what OSCR knows of the paper and links the code to this page. Paste one of these under the README's title. Keep the two marks around it: they let the badge be replaced in place, never added twice. Nothing is changed for you.

Markdown
<!-- oscr-badge:start -->
[![OSCR](https://openscicode.org/badge/doi/10.1186/s13024-024-00747-3.svg)](https://openscicode.org/badge/doi/10.1186/s13024-024-00747-3)
<!-- oscr-badge:end -->
reStructuredText
.. oscr-badge:start

.. image:: https://openscicode.org/badge/doi/10.1186/s13024-024-00747-3.svg
   :target: https://openscicode.org/badge/doi/10.1186/s13024-024-00747-3
   :alt: OSCR

.. oscr-badge:end
HTML
<!-- oscr-badge:start -->
<a href="https://openscicode.org/badge/doi/10.1186/s13024-024-00747-3"><img src="https://openscicode.org/badge/doi/10.1186/s13024-024-00747-3.svg" alt="OSCR"></a>
<!-- oscr-badge:end -->

On GitHub, open the README, choose Edit (the pencil), paste the snippet under the title, then "Commit changes".

Or let it be kept for you, once you choose it: oscr badge --write from the command line, or the GitHub Action in your repository's workflows. Every other form is on the badge page.

Request its removal

To ask for this record, the copies of its authors' scripts or its tracing map to be removed, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).