Alzheimer's / dementia

Population: 489 papers with a page, 255 of them with their authors' code.

Saturday, 26 September 2026 (1 paper)

[1] doi: [paper, data]

Gut microbiota dysbiosis is associated with hippocampal neuronal damage and behavioral alterations in APP/PS1 mice with high-salt diet

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

Sunday, 20 September 2026 (1 paper)

[2] doi:10.1080/0886022x.2026.2732422 [paper, data]

Serum BDNF and cognitive risk in maintenance hemodialysis: a machine learning study.

Journal: Renal failure

Status: data only, 1 dataset cited

Saturday, 19 September 2026 (1 paper)

[3] Code ↔ Paper doi:10.1096/fba.2026-00194 [paper, repository]

Glial and Vascular Plasma Biomarkers Across the Alzheimer's Disease Continuum: An ADNI-Based Longitudinal Study.

Journal: FASEB bioAdvances

Authors' code: Khodakaram/adni-glial-vascular-axis (MIT)

Status: code verified, 17 files readable, 17 matches

Friday, 18 September 2026 (1 paper)

[4] Code ↔ Paper doi:10.1126/sciadv.adx0731 [paper, repository]

Targeting glial PD-1/PD-L1 restores microglial homeostasis and reduces neuronal hyperactivity in an Alzheimer's disease model.

Journal: Science advances

Authors' code: Zenodo 19411437 (CC-BY-4.0)

Status: code verified, 3 files readable

Thursday, 17 September 2026 (1 paper)

[5] doi:10.1007/s12031-026-02598-7 [paper, data]

A Lipoylation-PDH-TCA Transcriptional Deficit in the Alzheimer's Disease Cortex - Donor-level Multi-cohort Evidence with Neuronal-composition, Disease-specificity and Matched-null Controls.

Journal: Journal of molecular neuroscience : MN

Status: data only, 1 dataset cited

Wednesday, 16 September 2026 (1 paper)

[6] Code ↔ Paper doi:10.1002/advs.77822 [paper, repository]

Temporal Trajectories of the Tau Aggregate Interactome Reveal Stage-Specific Vulnerabilities in Alzheimer's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Zenodo 17990783 (MIT), dboeken/boeken_tau_aggregate_interactome (MIT)

Status: code verified, 19 files readable, 2 matches

Monday, 14 September 2026 (1 paper)

[7] Code ↔ Paper doi:10.1038/s43587-026-01207-x [paper, repository]

A microprotein atlas of the human frontal cortex in Alzheimer's disease.

Journal: Nature aging

Authors' code: huggingface.co/spaces/brmiller/brain-microprotein-atlas-app (MIT), brendan-miller-salk/brain-microprotein-atlas (no license)

Status: code verified, 61 files readable, 29 matches

Saturday, 12 September 2026 (1 paper)

[8] doi:10.1016/j.ynirp.2026.100405 [paper, data]

White matter microstructure and motor function in amnestic mild cognitive impairment and Alzheimer's dementia.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

Friday, 11 September 2026 (2 papers)

[9] doi:10.1186/s12974-026-03970-5 [paper, data]

Estrogen deprivation exacerbates Alzheimer's disease pathology through neuronal CTSS signaling.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[10] doi:10.1038/s43587-026-01204-0 [paper, data]

Fibronectin mediates APOE4-driven blood-brain barrier dysfunction in Alzheimer's disease.

Journal: Nature aging

Status: data only, 2 datasets cited

Thursday, 10 September 2026 (3 papers)

[11] doi:10.1093/braincomms/fcag341 [paper]

Distinct and shared multimodal neuroimaging patterns in clinical frontotemporal dementia syndromes.

Journal: Brain communications

Status: code on request

[12] doi:10.1162/imag.a.1358 [paper, data]

Spatial covariance of mGluR5 density and structural degeneration in behavioral variant frontotemporal degeneration.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[13] Code ↔ Paper doi:10.1371/journal.pcbi.1013752 [paper, repository]

Calmodulin controls spatial and temporal specificity of calcium-induced calcium release.

Journal: PLoS computational biology

Authors' code: asiaszmek/stochastic_ER (CC-BY-4.0)

Status: code verified, 39 files readable, 2 matches

Wednesday, 9 September 2026 (1 paper)

[14] Code ↔ Paper doi:10.1002/advs.77419 [paper, repository]

Early Spatial and Contextual Coding Deficits in Hippocampal CA1 Precede Performance Decline in an Alzheimer's Disease Model.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: doi:10.5061/dryad.z34tmpgwr (no license)

Status: dead link

Friday, 4 September 2026 (1 paper)

[15] doi:10.3892/ijmm.2026.5973 [paper, data]

Effect of MALT1 inhibition by MI‑2 on the microglial phenotype switch, inflammatory cytokine secretion, neuronal loss and oxidative stress in Alzheimer's disease.

Journal: International journal of molecular medicine

Status: data only, 1 dataset cited

Thursday, 3 September 2026 (1 paper)

[16] doi:10.3389/fsysb.2026.1897648 [paper, data]

Integrative genome-scale metabolic model of GABAergic neurons reveals metabolic signatures across the mild cognitive impairment - Alzheimer disease continuum.

Journal: Frontiers in systems biology

Status: data only, 1 dataset cited

Wednesday, 2 September 2026 (1 paper)

[17] Code ↔ Paper doi:10.1038/s44400-026-00125-4 [paper, repository]

Regulators of interferon-responsive microglia uncovered by Genome-wide CRISPRi screening.

Journal: NPJ dementia

Authors' code: immunogenomics/presto (no license), reetm09/mixscale (no license)

Status: code verified, 45 files readable, 5 matches

Tuesday, 1 September 2026 (16 papers)

[18] doi:10.1002/brb3.71684 [paper, data]

Evaluating the 8-Year Association Between Cognition and Beta Amyloid in the Dallas Lifespan Brain Study Cohort.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[19] doi:10.1097/md.0000000000050324 [paper, data]

Transcriptomic integration reveals immune heterogeneity in vascular dementia and identifies ELF2 as a candidate therapeutic target.

Journal: Medicine

Status: data only, 1 dataset cited

[20] Code ↔ Paper doi:10.1093/ageing/afag263 [paper, repository]

Cardiometabolic medication exposures and cognitive outcomes in Alzheimer's disease.

Journal: Age and ageing

Authors' code: Sabrina-wyh/Multicohort-Medication-AD (no license)

Status: code verified, 17 files readable, 5 matches

[21] Code ↔ Paper doi:10.1093/bib/bbag485 [paper, repository]

Single-cell-level perturbation-induced and condition-related signal estimation with batch effect removal using NDreamer.

Journal: Briefings in bioinformatics

Authors' code: lugia-xiao/NDreamer (GPL-3.0), lugia-xiao/NDreamer_reproducible (GPL-3.0)

Status: code verified, 46 files readable, 24 matches

[22] Code ↔ Paper doi:10.1002/alz.71822 [paper, repository]

SynthPET: A 3D generative AI approach for FDG-PET image synthesis from T1-weighted MRI and ASL CBF in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: adni.loni.usc.edu/data-samples/access-data (no license)

Status: dead link

[23] Code ↔ Paper doi:10.1002/alz.71823 [paper, repository]

Cellular transcriptomic signatures underpinning the heterogeneity of depression in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: NCTrailRunner/NPS_manuscript (no license)

Status: code verified, 23 files readable, 8 matches

[24] doi:10.1002/alz.71804 [paper, data]

A meta-refined human Alzheimer's disease-associated gene subset shows partial mouse-model pathway correspondence and limited cross-cohort machine-learning transportability.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[25] Code ↔ Paper doi:10.1002/alz.71773 [paper, repository]

Brain-derived plasma p-tau217 shows enhanced dynamic range for Alzheimer's disease neuropathological change.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: ysu001/PUP (BSD-3-Clause)

Status: code verified, 277 files readable, 1 match

[26] doi:10.1002/alz.71811 [paper]

Female vulnerability to microvascular transport dysfunction emerges early across the Alzheimer's disease continuum.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[27] Code ↔ Paper doi:10.1002/alz.71714 [paper, repository]

Cross-tissue immune profiling of APOE ε4 reveals early dysregulation in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Art83/AD_apoe (no license)

Status: dead link

[28] doi:10.1093/brain/awag043 [paper, data]

Cytomegalovirus-induced T cell responses accelerate Alzheimer's disease progression in mice.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[29] Code ↔ Paper doi:10.1093/brain/awag131 [paper, repository]

Data-driven modelling of tau pathology reveals distinct progressive supranuclear palsy subtypes.

Journal: Brain : a journal of neurology

Authors' code: JaunmuktaneLab (no license)

Status: code verified

[30] Code ↔ Paper doi:10.1093/brain/awag075 [paper, repository]

Modelling the temporal evolution of plasma p-tau217, amyloid PET, tau PET and cognition.

Journal: Brain : a journal of neurology

Authors' code: therneau/aftmodel (no license)

Status: code verified, 6 files readable

[31] Code ↔ Paper doi:10.1093/brain/awag039 [paper, repository]

Mapping the causal chain from genetic risk variants to lipid dysmetabolism in Parkinson's disease.

Journal: Brain : a journal of neurology

Authors' code: ruthbpaula/PD_multiomics (no license)

Status: code verified, 6 files readable, 11 matches

[32] doi:10.1093/brain/awag033 [paper, data]

Impairment of hippocampal gamma oscillations, mitochondria and neurovascular function in CADASIL.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[33] Code ↔ Paper doi:10.1093/brain/awag032 [paper, repository]

A rostral prefrontal mediolateral gradient predicts creativity in frontotemporal dementia.

Journal: Brain : a journal of neurology

Authors' code: OSF rtnzw (no license)

Status: code verified, 7 files readable, 2 matches

Monday, 31 August 2026 (2 papers)

[34] Code ↔ Paper doi:10.1002/advs.77453 [paper, repository]

Tau Aggregate Imaging and Transcriptomics of Alzheimer's Disease Brain at Different Stages of Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Zenodo 15635269 (MIT), dboeken/boeken_tauopathies (MIT)

Status: code verified, 11 files readable, 1 match

[35] Code ↔ Paper doi:10.1038/s44400-026-00100-z [paper, repository]

Peripheral blood microarray-based transcriptomic and epigenetic analyses identify immune, inflammation, and metabolic dysregulation in Alzheimer's disease.

Journal: NPJ dementia

Authors' code: cind/adni-mrna-dnam-analysis (no license)

Status: code verified, 17 files readable, 16 matches

Saturday, 29 August 2026 (1 paper)

[36] Code ↔ Paper doi:10.1002/advs.202600020 [paper, repository]

Early Retinal UCHL1 Dysregulation Coupled With Synaptic Loss Reflects Alzheimer's Disease Severity.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Xomicsdatascience/Ubiquitin_Ad (no license)

Status: code verified, 2 files readable, 1 match

Friday, 28 August 2026 (3 papers)

[37] Code ↔ Paper doi:10.1126/sciadv.aee4940 [paper, repository]

Neuron-derived SPP1 instructs microglia to limit degeneration.

Journal: Science advances

Authors' code: doi:10.7910/dvn/wj0mji (no license)

Status: code found, not verified yet

[38] Code ↔ Paper doi:10.1038/s41598-026-61605-4 [paper, repository]

Learning precise segmentation of neurofibrillary tangles from rapid manual point annotations.

Journal: Scientific reports

Authors' code: keiserlab/tangle-tracer (MIT)

Status: code verified, 31 files readable, 16 matches

[39] doi:10.3389/fnagi.2026.1855522 [paper, data]

Astragaloside IV attenuates hypoxia-reoxygenation-induced endothelial senescence and vascular inflammation by modulating the NOTCH1/VCAM-1 axis.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

Thursday, 27 August 2026 (6 papers)

[40] Code ↔ Paper doi:10.1212/wnl.0000000000218472 [paper, repository]

Lesion-Level Subtypes of White Matter Hyperintensity Evolution Beyond Spatial Location.

Journal: Neurology

Authors' code: rglezgz/WMH-subtypes (no license)

Status: code verified, 8 files readable, 9 matches

[41] Code ↔ Paper doi:10.1038/s41588-026-02722-8 [paper, repository]

A multiancestry polygenic risk score for Alzheimer's disease is associated with cognitive decline and neuropathological hallmarks in diverse populations.

Journal: Nature genetics

Authors' code: nkurniansyah/PRSsum_Simple (no license), nkurniansyah/Alzheimer_PRS (no license), nkurniansyah (no license), Zenodo 20818015 (CC-BY-4.0)

Status: code verified, 16 files readable, 8 matches

[42] doi:10.1186/s40035-026-00570-4 [paper, data]

HSPA8 orchestrates SNARE complex assembly to drive extracellular vesicle-mediated spread of p-tau217 in Alzheimer's disease.

Journal: Translational neurodegeneration

Status: data only, 1 dataset cited

[43] Code ↔ Paper doi:10.1093/braincomms/fcag326 [paper, repository]

Brain multiomic profiling identifies tau-related transcriptomic dysregulation in Alzheimer's disease.

Journal: Brain communications

Authors' code: synapse.org/synapse:syn75046458 (no license)

Status: code verified

[44] doi:10.3389/fninf.2026.1902549 [paper, data]

Interpretable AI for neural signal decoding in dementia: an EEG ensemble approach to differential diagnosis.

Journal: Frontiers in neuroinformatics

Status: data only, 2 datasets cited

[45] doi:10.3390/ijms27177675 [paper, data]

LncRNA Gas5, a Target of the Nonsense-Mediated Decay Pathway in the Brain, Regulates Neuroinflammation and Neurodegenerative Disease Pathways in a Tauopathy Mouse Model.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Wednesday, 26 August 2026 (3 papers)

[46] doi:10.1186/s43556-026-00546-w [paper, data]

Silencing arachidonate 15-lipoxygenase alleviates hypoxia-induced cognitive impairment through the mediation of phospholipase A2 group IVC-LPC18:0 to suppress ferroptosis.

Journal: Molecular biomedicine

Status: data only, 1 dataset cited

[47] Code ↔ Paper doi:10.1212/wnl.0000000000218519 [paper, repository]

EOAD-Signature Atrophy Predicts Dementia in Early-Onset MCI due to Alzheimer Disease: An MRI-Based Prognostic Biomarker.

Journal: Neurology

Authors' code: thiagoparanhos/EOAD-prognostication (no license)

Status: code verified, 6 files readable, 3 matches

[48] doi:10.3389/fimmu.2026.1937738 [paper, data]

Multi-regional transcriptomic analysis reveals early nociceptive and neuroinflammatory alterations in APP/PS1 mice.

Journal: Frontiers in immunology

Status: data only, 2 datasets cited

Tuesday, 25 August 2026 (5 papers)

[49] doi:10.1073/pnas.2614164123 [paper, data]

Loss of neuronal population organization links pathology to behavior in a model of Alzheimer's disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[50] Code ↔ Paper doi:10.1371/journal.pcbi.1014532 [paper, repository]

High reelin expression may explain why a subgroup of entorhinal cortex neurons functions as an initial nucleation site of Alzheimer's disease.

Journal: PLoS computational biology

Authors' code: Zenodo 15680979 (CC-BY-4.0)

Status: code verified, 19 files readable

[51] Code ↔ Paper doi:10.1038/s41467-026-76929-y [paper, repository]

Next-generation multiplexed targeted proteomics quantifies post-translational modifications in disease and compound-protein interactions with high throughput.

Journal: Nature communications

Authors' code: thermofisherlsms/iapi (MIT), uwpr.github.io/comet (no license)

Status: code verified, 13 files readable

[52] doi:10.2147/dddt.s627186 [paper, data]

Esketamine Attenuates Postoperative Neurocognitive Disorder in Aged Mice: Associations with Bioenergetic Remodeling in Hippocampal CD11b-Enriched Cell Fractions and Glycolysis-Related Signaling.

Journal: Drug design, development and therapy

Status: data only, 1 dataset cited

[53] doi:10.1016/j.isci.2026.117335 [paper, data]

Coincidence of L1 retrotransposition and DNA repair deficiency elicits synthetic lethality in S-phase mature neurons.

Journal: iScience

Status: code on request, 1 dataset cited

Monday, 24 August 2026 (3 papers)

[54] Code ↔ Paper doi:10.1371/journal.pcbi.1014706 [paper, repository]

Double shrinkage transfer causal learning: An application to alzheimer's disease.

Journal: PLoS computational biology

Authors' code: LESWinnie/DSTCL (no license)

Status: code verified, 5 files readable, 5 matches

[55] Code ↔ Paper doi:10.34133/research.1392 [paper, repository]

Neuroimaging Epicenters as Vulnerable Nodes in Plasma p-tau217/Aβ42-Positive Alzheimer's Disease.

Journal: Research (Washington, D.C.)

Authors' code: Jiamingglyy/neuroepicenter-gof (MIT)

Status: code verified, 25 files readable

[56] doi:10.1016/j.isci.2026.117250 [paper]

Comparative effectiveness of multiple interventions for Alzheimer's disease on ABC syndromes and QoL: A Bayesian network meta-analysis.

Journal: iScience

Status: code on request

Sunday, 23 August 2026 (1 paper)

[57] doi:10.3390/ijms27177542 [paper, data]

Assessment of the Association of Periodontitis and Diabetes Mellitus with Alzheimer's Disease in a Mouse Model.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Thursday, 20 August 2026 (2 papers)

[58] doi:10.3389/fimmu.2026.1911726 [paper, data]

Identification of interleukin-11 as a comorbid risk factor for prostate cancer and Alzheimer's disease using integrated bioinformatics and machine learning.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[59] Code ↔ Paper doi:10.1038/s41467-026-76837-1 [paper, repository]

Drug screen and machine learning predict neuroprotective agents in a preclinical human model of childhood dementia.

Journal: Nature communications

Authors' code: jacobgil/pytorch-grad-cam (MIT), bardylab/MPSIIIA_snRNAseq_DrugScreen_Paper_2026 (no license), bardylab/MPSIIIA_Machine_Learning_DrugScreen_Paper_2026 (no license), bardylab/MPSIIIA_snRNA-seq_DrugScreen_Paper_2026 (no license)

Status: code verified, 84 files readable, 23 matches

Wednesday, 19 August 2026 (2 papers)

[60] Code ↔ Paper doi:10.1038/s41593-026-02363-4 [paper, repository]

Cortical thickness changes precede high levels of amyloid by at least 7 years.

Journal: Nature neuroscience

Authors' code: jamesmroe/yearsBeforeAB (MIT)

Status: code verified, 17 files readable, 6 matches

[61] doi:10.3389/fmicb.2026.1889475 [paper]

<i>Lactobacillus acidophilus</i> CICC 22162 alleviates sleep deprivation-induced cognitive impairment by remodeling gut microbiota and enhancing S-adenosylmethionine-mediated neuroimmune regulation.

Journal: Frontiers in microbiology

Status: data only

Tuesday, 18 August 2026 (1 paper)

[62] doi:10.3390/biology15161423 [paper]

Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer's Disease Continuum: Cross-Sectional and Progression-Related Associations.

Journal: Biology

Status: code on request

Monday, 17 August 2026 (1 paper)

[63] doi:10.3389/fphar.2026.1830927 [paper, data]

<i>Astragalus polysaccharide</i> alleviates neuropathology and cognitive deficits by modulating gut microbiota and neuroinflammation in an Alzheimer's disease model.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

Friday, 14 August 2026 (4 papers)

[64] doi:10.1038/s41588-026-02709-5 [paper, data]

PLCG2 downregulation impairs synaptic function and increases Alzheimer's disease hallmarks in neuronal cultures.

Journal: Nature genetics

Status: data only, 3 datasets cited

[65] Code ↔ Paper doi:10.1186/s44477-026-00045-w [paper, repository]

Proteomic analysis of human chronic traumatic encephalopathy brain implicates proteasome and ribosome dysfunction in disease severity.

Journal: Molecular neurodegeneration advances

Authors' code: BU-Neuromics/cte-proteomics-2026 (no license)

Status: code verified, 10 files readable, 9 matches

[66] Code ↔ Paper doi:10.1016/j.isci.2026.117187 [paper, repository]

Functional and structural characterization of dendritic spine pathology in a mouse model of tauopathy.

Journal: iScience

Authors' code: gtzook/iSLAB-data-analysis (no license), yuyiyi/AUTOTUNE_GUIdevelopment (GPL-3.0)

Status: code verified, 166 files readable, 1 match

[67] doi:10.1038/s41467-026-76725-8 [paper, data]

TogoPhosTAC as a delivery-ready platform for targeted protein dephosphorylation.

Journal: Nature communications

Status: data only, 1 dataset cited

Thursday, 13 August 2026 (4 papers)

[68] Code ↔ Paper doi:10.1523/eneuro.0407-25.2026 [paper, repository]

Connectome-Guided Personalization of Optimal TDCS Intervention Selection in Alzheimer's Disease: A Modeling Study.

Journal: eNeuro

Authors' code: CornelisStam/BrainWave (no license)

Status: empty repository, 1 file readable

[69] doi:10.64898/2026.08.12.26360241 [paper, data]

Diffusion kurtosis imaging (gen)omics unravels mechanisms of cerebral small vessel disease

Journal: medRxiv (preprint)

Status: data only, 1 dataset cited

[70] Code ↔ Paper doi:10.3390/brainsci16080856 [paper, repository]

Alzheimer's Disease Detection Using Combined EEG Source Connectivity and Microstate Features.

Journal: Brain sciences

Authors' code: 7788890/SMMS-AD-Code (no license)

Status: code verified, 12 files readable, 5 matches

[71] Code ↔ Paper doi:10.3389/fnagi.2026.1839445 [paper, repository]

The molecular mechanisms of Guizhi Fuling Pills in ameliorating Alzheimer's disease-like cognitive impairment: insights from transcriptomics, metabolomics, and gut microbiome.

Journal: Frontiers in aging neuroscience

Authors' code: OpenGene/fastp (MIT), tanghaibao/GOatools (BSD-2-Clause)

Status: code verified, 204 files readable, 2 matches

Wednesday, 12 August 2026 (3 papers)

[72] Code ↔ Paper doi:10.1126/sciadv.aee2305 [paper, repository]

Prediction of mild cognitive impairment progression using time-sensitive multimodal biomarkers.

Journal: Science advances

Authors' code: Zenodo 19897907 (MIT), openpreventad.loris.ca (no license), mcgill.ca/bic/neuroinformatics (no license), ggsegverse/ggseg (other), Zenodo 19411014 (CC-BY-4.0), jogaru1818/progression_to_mci (no license), villeneuvelab/vlpp (MIT)

Status: code verified, 132 files readable, 11 matches

[73] Code ↔ Paper doi:10.1177/13872877261477016 [paper, repository]

Progression from mild cognitive impairment to dementia in Alzheimer's disease: Whole cortex voxelwise functional connectivity analysis with multivariate distance matrix regression.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: lkf-ki/mdmr-voxel-wise-mci-conversion (GPL-3.0)

Status: code verified, 4 files readable

[74] doi:10.3390/s26165109 [paper]

Feature Selection Analysis and Robustness to Missing Data for Sensor-Based Prognostic Modeling of Alzheimer's Disease Progression.

Journal: Sensors (Basel, Switzerland)

Status: code on request

Tuesday, 11 August 2026 (4 papers)

[75] Code ↔ Paper doi:10.1093/braincomms/fcag303 [paper, repository]

Sleep spindles are linked to white matter connectivity differentially in older adults with and without cognitive impairment.

Journal: Brain communications

Authors' code: OSF uy7jk (no license)

Status: code verified, 1 file readable, 2 matches

[76] Code ↔ Paper doi:10.2147/dddt.s624727 [paper, repository]

Lower Risk of Incident Dementia with SGLT2 Inhibitor Versus DPP-4 Inhibitor Initiation in Patients with Type 2 Diabetes and Prior Traumatic Brain Injury: A Retrospective Cohort Study.

Journal: Drug design, development and therapy

Authors' code: dovepress.com/article/supplementary_file (no license)

Status: code verified

[77] doi:10.3389/fnagi.2026.1788991 [paper, data]

Plasma multi-miRNA models classify Alzheimer's, Parkinson's, and Lewy body dementia.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[78] Code ↔ Paper doi:10.1007/s42761-026-00394-5 [paper, repository]

Amygdalar Pattern Similarity to Negative and Neutral Images, Ratings of the Images, and PET-Measured Amyloid and Tau Levels in Older Adults Without Dementia.

Journal: Affective science

Authors' code: OSF qswk6 (no license)

Status: code verified, 4 files readable, 3 matches

Monday, 10 August 2026 (1 paper)

[79] Code ↔ Paper doi:10.1016/j.isci.2026.117038 [paper, repository]

Multi-region brain transcriptomes uncover two subtypes of aging individuals with differences in Alzheimer risk and the impact of <i>APOEε4</i>.

Journal: iScience

Authors' code: anniejlee/multi-region-transcriptomes-aging-subtypes (no license)

Status: code verified, 3 files readable, 2 matches

Saturday, 8 August 2026 (2 papers)

[80] doi:10.1016/j.celrep.2026.117803 [paper]

APOE3 and APOE4 human astrocytes differentially modulate Alzheimer's disease pathology and microglial responses in chimeric mice.

Journal: Cell reports

Status: code on request

[81] Code ↔ Paper doi:10.1016/j.tjpad.2026.100646 [paper, repository]

Quantifying generalization error in machine learning prediction of cognitive decline.

Journal: The journal of prevention of Alzheimer's disease

Authors' code: rhuepp/gemacode (MIT)

Status: code verified, 4 files readable, 4 matches

Friday, 7 August 2026 (2 papers)

[82] doi:10.1016/j.tjpad.2026.100649 [paper]

Timing of cognitive decline onset and life-course trajectories A pooled longitudinal analysis of 14,389 adults across three cohorts.

Journal: The journal of prevention of Alzheimer's disease

Status: code on request

[83] doi:10.1021/acsomega.6c02969 [paper, data]

Integrated Virtual Screening and Molecular Electrostatic Surface Potential Descriptors for Predicting BACE1 Inhibitor Interactions in Alzheimer's Disease.

Journal: ACS omega

Status: data only, 1 dataset cited

Thursday, 6 August 2026 (2 papers)

[84] Code ↔ Paper doi:10.1162/imag.a.1322 [paper, repository]

Fine-scale individualized gyral folding-based cortical similarity networks reveal distinct organizational patterns in Alzheimer's disease and Lewy body dementia.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: m1nhengChen/Gyral-Folding-Network (MIT)

Status: code verified, 6 files readable, 9 matches

[85] Code ↔ Paper doi:10.3389/fneur.2026.1822479 [paper, repository]

Circulating neuron-derived cfDNA for blood-based detection of Alzheimer's and other neurodegenerative conditions.

Journal: Frontiers in neurology

Authors' code: nanoporetech/dorado (GPL-3.0), nanoporetech/modkit (GPL-3.0), Wasatch-Biolabs-Bfx/MethylSeqR (other)

Status: code verified, 925 files readable, 4 matches

Wednesday, 5 August 2026 (5 papers)

[86] doi:10.1371/journal.pgen.1011909 [paper, data]

Glial cell toxicity in a Drosophila C9orf72 neurodegeneration model.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[87] Code ↔ Paper doi:10.1016/j.ebiom.2026.106400 [paper, repository]

Data-driven trajectories of atrophy explain clinical heterogeneity across Lewy body diseases.

Journal: EBioMedicine

Authors' code: ucl-usyd-transcend.github.io (no license)

Status: code verified

[88] Code ↔ Paper doi:10.1016/j.xcrm.2026.102968 [paper, repository]

Corpora amylacea profiling reveals disease stage and brain region-specific alterations in glycogen metabolism in Alzheimer's disease patient brains.

Journal: Cell reports. Medicine

Authors' code: doi:10.7910/dvn/sougim (no license), forum.image.sc/t/script-for-average-non-cell-detection-area-in-multiple-annotations (no license)

Status: code verified

[89] Code ↔ Paper doi:10.1002/nep3.70054 [paper, repository]

Serum elemental profile-based machine learning models for Alzheimer's disease identification and cognitive score prediction.

Journal: Neuroprotection (Chichester, England)

Authors' code: weige347/AD-classifier (no license)

Status: code verified, 7 files readable, 10 matches

[90] Code ↔ Paper doi:10.1080/20002297.2026.2705667 [paper, repository]

Oral microbiota dysbiosis related to the cortical thinning and cognitive impairment in cerebral small vessel disease.

Journal: Journal of oral microbiology

Authors' code: zhuozhizheng/Chinese_normative_reference_and_downstream_clinical_applications (no license)

Status: code verified, 29 files readable, 1 match

Tuesday, 4 August 2026 (1 paper)

[91] Code ↔ Paper doi:10.1038/s41593-026-02367-0 [paper, repository]

A reproducible three-dimensional model of human brain tissue to investigate physiological and disease-associated microglia phenotypes.

Journal: Nature neuroscience

Authors' code: jsschrepping/r_docker (MIT), gitlab.dzne.de/ag-beyer/singlecell_analysis_3btm (no license)

Status: code verified, 20 files readable, 18 matches

Monday, 3 August 2026 (4 papers)

[92] doi:10.1002/advs.76989 [paper]

Targeting Hippocampal PTEN Suppresses Ferroptosis and Rescues Cognitive Decline in Alzheimer's Disease via Dual AKT/GSK3β/Nrf2 and AKT/STAT3 Axes.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[93] doi:10.1038/s44321-026-00482-w [paper, data]

Reducing CETP activity prevents memory decline in an Alzheimer's disease mouse model.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[94] doi:10.3390/ijms27156964 [paper, data]

Senescence Markers and Associated Transcriptomic Changes Are Expressed at Early Stages of Alzheimer's Neuropathology but Are Not Independently Related to Dementia.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[95] doi:10.3389/fneur.2026.1879894 [paper]

Perivascular diffusion and white matter free water improve identification of cognitive impairment in cerebral small vessel disease.

Journal: Frontiers in neurology

Status: code on request

Saturday, 1 August 2026 (13 papers)

[96] Code ↔ Paper doi:10.1093/brain/awaf443 [paper, repository]

Cellular signatures underlying functional resilience in presymptomatic frontotemporal dementia.

Journal: Brain : a journal of neurology

Authors' code: kamentsvetanov/functional_resilience_ftd (GPL-3.0), mrc-cbu/riksneurotools (GPL-3.0), frantisekvasa/rotate_parcellation (MIT), BMHLab/AHBAprocessing (no license), netneurolab/hansen_genescognition (no license)

Status: code verified, 423 files readable, 6 matches

[97] Code ↔ Paper doi:10.1002/alz.71760 [paper, repository]

Chronic stress, social support, and domain-specific cognitive decline in HABS-HD.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: jkleeri/mielkelab_chronicstress_socialsupport_HABSHD (no license)

Status: code verified, 2 files readable, 2 matches

[98] doi:10.1002/alz.71651 [paper]

Longitudinal effects of physical activity on sleep in association with hippocampal-amygdala subfield structure and functional connectivity in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[99] doi:10.1002/alz.71680 [paper, data]

A combined artificial intelligence-wet lab approach identifies a pivotal role of the NAD<sup>+</sup>-mitophagy axis on aging and neurodegeneration.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[100] Code ↔ Paper doi:10.1002/alz.71745 [paper, repository]

Regional astrocyte dysregulation and altered glymphatic-related markers in Alzheimer's disease frontal cortex.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: xanthippilouka/Human_Brain_Image_Analysis (no license)

Status: code verified, 8 files readable, 2 matches

[101] doi:10.1021/acs.jmedchem.6c01882 [paper, data]

Selective Brain-Penetrant TTBK1 Inhibitors Modulate TDP-43 Pathology and Rescue Cognitive Deficits in a Mouse Model of TDP-43 Proteinopathy.

Journal: Journal of medicinal chemistry

Status: data only, 4 datasets cited

[102] doi:10.1111/acel.70653 [paper, data]

Distinct Transposable Element Transcript Patterns in Microglia Across Aging and Alzheimer's Disease.

Journal: Aging cell

Status: data only, 1 dataset cited

[103] Code ↔ Paper doi:10.1093/bioinformatics/btag553 [paper, repository]

Spatial-spectral fusion enables drug repositioning by capturing indirect and long-range associations in biological networks.

Journal: Bioinformatics (Oxford, England)

Authors' code: Juniper-cola/BIO_SSF (MIT)

Status: code verified, 14 files readable, 2 matches

[104] doi:10.1002/cns.71074 [paper, data]

Bard1-Mediated Regulation of Hnrnpa2b1 Ubiquitination and Protein Stability Contributes to Neuronal Ferroptosis and Cognitive Dysfunction Following Ischemic Stroke.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[105] doi:10.1111/acel.70646 [paper, data]

HNRNPC Succinylation Influences the Neurodegeneration of Alzheimer's Disease Through YME1L1-Mediated Mitochondrial Metabolism.

Journal: Aging cell

Status: data only, 1 dataset cited

[106] Code ↔ Paper doi:10.1002/alz.71711 [paper, repository]

Exploring longitudinal relationships among Alzheimer's disease biomarkers.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: WashUFluidBiomarkers/Dynamic-Visualization (MIT)

Status: code verified, 9 files readable, 2 matches

[107] Code ↔ Paper doi:10.1002/alz.71567 [paper, repository]

Associations of dementia polyexposure scores to Alzheimer's disease endophenotypes in a diverse population.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: AndrewsLabUCSF/CRS-analysis (MIT)

Status: code verified, 6 files readable, 13 matches

[108] Code ↔ Paper doi:10.1093/bioinformatics/btag540 [paper, repository]

Deciphering spatial heterogeneity by multimodal spatial transcriptomics modelling with SpatialModal.

Journal: Bioinformatics (Oxford, England)

Authors' code: xingyili/SpatialModal (no license), Zenodo 21264356 (CC-BY-4.0)

Status: code verified, 20 files readable, 6 matches

Friday, 31 July 2026 (2 papers)

[109] doi:10.1016/j.nbas.2026.100164 [paper, data]

Single-cell transcriptomic analysis reveals age-related remodeling of brain endothelial cells.

Journal: Aging brain

Status: data only, 1 dataset cited

[110] doi:10.3390/diagnostics16152428 [paper, data]

PCA-Enhanced Deep Features for Alzheimer's Disease Stage Classification with EFMM.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

Thursday, 30 July 2026 (3 papers)

[111] doi:10.3390/cells15151379 [paper, data]

Extracellular Aβ42 Oligomers Induce ROCK2 Hyperactivation Through Dual Mediation by RhoA and GzmB: Significance of Moderate ROCK2 Activity in Neural Cells.

Journal: Cells

Status: data only, 1 dataset cited

[112] doi:10.3389/fnins.2026.1871265 [paper, data]

Clustered pattern projection for EEG dementia classification: evaluating the reliability of disorder patterns.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[113] Code ↔ Paper doi:10.1038/s41398-026-04292-z [paper, repository]

Regional juxtacortical microstructural changes and gene expression provide insights into neurodegeneration in Alzheimer's disease.

Journal: Translational psychiatry

Authors' code: Sahuhu-Sun/Imaging-transcriptomics (no license)

Status: code verified, 5 files readable, 2 matches

Wednesday, 29 July 2026 (2 papers)

[114] doi:10.1186/s40035-026-00567-z [paper, data]

Transaldolase 1 contributes to pentose phosphate pathway disruption and synaptic dysfunction in Alzheimer's disease.

Journal: Translational neurodegeneration

Status: data only, 3 datasets cited

[115] doi:10.3389/fnins.2026.1875642 [paper, data]

Convolutional neural networks in brain disease diagnosis: a unified review of Alzheimer's, Parkinson's, and brain tumor classification.

Journal: Frontiers in neuroscience

Status: data only, 7 datasets cited

Tuesday, 28 July 2026 (3 papers)

[116] Code ↔ Paper doi:10.1177/13872877261471049 [paper, repository]

Predicting future brain atrophy based on longitudinal MRI.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: MaryamHadji/Future-prediction (MIT)

Status: code verified, 14 files readable, 2 matches

[117] Code ↔ Paper doi:10.1016/j.xcrm.2026.102943 [paper, repository]

Parent-of-origin effects in Alzheimer's liability dissociate neurocognitive and cardiovascular traits in at-risk individuals.

Journal: Cell reports. Medicine

Authors' code: chloesavignac/PREVENTAD (no license), Zenodo 20355121 (CC-BY-4.0), Zenodo 14915601 (BSD-3-Clause), thomasyeolab/cbig (MIT), joblib/joblib (BSD-3-Clause)

Status: code verified, 2,206 files readable

[118] doi:10.3389/fncel.2026.1886995 [paper]

CD22 regulates Aβ clearance in microglia through INPP5D signaling.

Journal: Frontiers in cellular neuroscience

Status: data only

Friday, 24 July 2026 (2 papers)

[119] doi:10.1016/j.jbc.2026.113363 [paper, data]

The Src family kinase YES regulates DNAJB6b chaperone activity to modulate tau aggregation in Alzheimer's disease.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[120] Code ↔ Paper doi:10.3390/biomedicines14081670 [paper, repository]

Limited Detectability of Network Functional Alterations in a Tauopathy Model Using Mouse Primary Cortical Cultures.

Journal: Biomedicines

Authors' code: Zenodo 1119025 (MIT)

Status: code verified, 949 files readable, 3 matches

Thursday, 23 July 2026 (2 papers)

[121] doi:10.1007/s10103-026-04962-w [paper]

Comparative efficacy and safety of photobiomodulation, transcranial direct current stimulation, and repetitive transcranial magnetic stimulation in Alzheimer's disease: a network meta-analysis of randomized controlled trials.

Journal: Lasers in medical science

Status: code on request

[122] doi:10.1186/s40035-026-00566-0 [paper, data]

Application of the Allen Human Brain Atlas in Alzheimer's disease and Parkinson's disease.

Journal: Translational neurodegeneration

Status: data only, 2 datasets cited

Wednesday, 22 July 2026 (3 papers)

[123] doi:10.1016/j.isci.2026.116861 [paper]

NAT10 inhibition corrects nuclear defects in tau mutant human neurons and extends lifespan in a <i>Drosophila</i> tauopathy model.

Journal: iScience

Status: code on request

[124] doi:10.1038/s41467-026-75895-9 [paper, data]

Distinct Filament Conformation for Receptor-Bound Amyloid-β from Alzheimer's Disease Brain.

Journal: Nature communications

Status: data only, 6 datasets cited

[125] Code ↔ Paper doi:10.1093/braincomms/fcag283 [paper, repository]

Enhancing brain age estimation with structural MRI and synthesized cerebral blood volume maps.

Journal: Brain communications

Authors' code: jzjomsky/DeepCBV-BrainAGE (no license)

Status: code verified, 7 files readable, 2 matches

Tuesday, 21 July 2026 (6 papers)

[126] Code ↔ Paper doi:10.1371/journal.pmed.1004860 [paper, repository]

Brain aging patterns among nine neurological disorders: A case-control study.

Journal: PLoS medicine

Authors' code: liangchuang11/Brain-age-prediction (no license), Zenodo 20743298 (CC-BY-4.0), liangchuang11/brain_age_de-identified-minimal_data (no license), Zenodo 20743260 (CC-BY-4.0)

Status: code verified, 156 files readable, 6 matches

[127] Code ↔ Paper doi:10.1038/s41467-026-74961-6 [paper, repository]

Spatial multi-omics identifies early synaptic pruning and context-specific dopaminergic vulnerability in synucleinopathies.

Journal: Nature communications

Authors' code: fstrueb/spatial_nigra (no license)

Status: code verified, 11 files readable, 9 matches

[128] Code ↔ Paper doi:10.1038/s44321-026-00488-4 [paper, repository]

DeepPlaque: a scalable multimodal platform for Aβ pathology and cell analysis in Alzheimer's disease.

Journal: EMBO molecular medicine

Authors' code: ChengJin-git/DeepPlaque (CC-BY-NC-ND-4.0)

Status: code verified, 5 files readable, 1 match

[129] Code ↔ Paper doi:10.1093/braincomms/fcag287 [paper, repository]

Plasma proteomics reveals molecular overlap between physical activity and dementia risk.

Journal: Brain communications

Authors' code: edammer/MAGMA.SPA (MIT), edammer (no license)

Status: code verified, 3 files readable

[130] doi:10.3389/fnagi.2026.1862742 [paper, data]

A brief checklist of modifiable dementia risk factors (RF12): associations with cognitive and affective measures in an Italian cohort.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[131] doi:10.1093/braincomms/fcag277 [paper]

Distinct brain extracellular vesicle microRNA profiles differ in frontotemporal dementia and Alzheimer's disease.

Journal: Brain communications

Status: code on request

Monday, 20 July 2026 (2 papers)

[132] doi:10.1159/000553651 [paper, data]

Covert Embolic Brain Infarcts, Remote Cortical Thinning, and Cognitive Impairment in Atrial Fibrillation: An Analysis of the Swiss-AF Cohort.

Journal: Cerebrovascular diseases (Basel, Switzerland)

Status: data only, 1 dataset cited

[133] Code ↔ Paper doi:10.1002/trc2.70286 [paper, repository]

The proteomic and metabolomic signature of inherited chromosomally integrated HHV-6 and its role in all-cause dementia and mortality risk: The UK Biobank study.

Journal: Alzheimer's & dementia (New York, N. Y.)

Authors' code: baydounm/UKB-paper25-supplementarydata (no license)

Status: code verified, 3 files readable

Sunday, 19 July 2026 (1 paper)

[134] doi:10.1002/ana.78300 [paper, data]

Distribution of Big Tau Isoforms in the Human Central and Peripheral Nervous System.

Journal: Annals of neurology

Status: data only, 1 dataset cited

Saturday, 18 July 2026 (1 paper)

[135] doi:10.3390/brainsci16070757 [paper, data]

Low-Intensity Focused Ultrasound Alters Alzheimer's Disease Pathology, In Vivo, as a Function of Ultrasound Dose and Age.

Journal: Brain sciences

Status: data only, 1 dataset cited

Friday, 17 July 2026 (2 papers)

[136] doi:10.1126/sciadv.aed6825 [paper, data]

SORLA up-regulation suppresses pathological effects in aged tauopathy mouse brain.

Journal: Science advances

Status: data only, 1 dataset cited

[137] doi:10.3389/fnagi.2026.1882681 [paper, data]

Predominantly left-lateralized EEG-EMG associations following gamma-theta stimulation in older adults with mild cognitive impairment.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

Thursday, 16 July 2026 (2 papers)

[138] doi:10.1038/s41467-026-75367-0 [paper, data]

Heterogenous microglial reactivity contrasts with stable vascular transcriptional programs in mouse models of Alzheimer's, CADASIL, and Traumatic Brain Injury.

Journal: Nature communications

Status: data only, 1 dataset cited

[139] Code ↔ Paper doi:10.1038/s41514-026-00443-0 [paper, repository]

Network-based discovery of regulatory drivers of cognitive decline in alzheimer's disease.

Journal: npj aging

Authors' code: Polster-lab/Analysis_GRN_ROSMAP (no license)

Status: code verified, 39 files readable, 7 matches

Wednesday, 15 July 2026 (3 papers)

[140] doi:10.1038/s41586-026-10793-0 [paper, data]

Cell-type signatures of Alzheimer's disease shared across population groups.

Journal: Nature

Status: data only, 3 datasets cited

[141] doi:10.1038/s41591-026-04547-8 [paper]

Immunotherapy with a short-lived anti-PD-L1 antibody in Alzheimer's disease: a phase 1b, randomized, double-blind trial.

Journal: Nature medicine

Status: code on request

[142] Code ↔ Paper doi:10.3389/frmbi.2026.1834726 [paper, repository]

Shotgun metagenomic analysis reveals taxonomic and functional alterations in the gut microbiome across prodromal and symptomatic Lewy body disease.

Journal: Frontiers in microbiomes

Authors' code: xiaowei-zhao-1111/LBD_Gut_Microbiome_2026 (no license)

Status: code verified, 9 files readable, 9 matches

Tuesday, 14 July 2026 (3 papers)

[143] doi:10.1128/mbio.01294-26 [paper, data]

Single-cell analysis of Powassan virus-infected brains reveals age-dependent neuroinflammatory crosstalk and progressive Alzheimer's-like APP/Aβ accumulation.

Journal: mBio

Status: code on request, 1 dataset cited

[144] Code ↔ Paper doi:10.1016/j.isci.2026.116622 [paper, repository]

Multi-omics profiling reveals gut microbiome signatures associated with cognitive decline in Alzheimer's disease.

Journal: iScience

Authors' code: ngdc.cncb.ac.cn/gsa (no license), shenx08/Metagenomic-data-assembly-and-analysis (no license)

Status: code verified, 2 files readable

[145] Code ↔ Paper doi:10.3389/fnins.2026.1843319 [paper, repository]

Humanized APOE mouse brain volume increases over age irrespective of sex and APOE genotype: implications for translational validity to the human.

Journal: Frontiers in neuroscience

Authors' code: CoBrALab/minc-toolkit-extras (other), CoBrALab/optimized_antsMultivariateTemplateConstruction (other)

Status: code verified, 60 files readable, 3 matches

Monday, 13 July 2026 (3 papers)

[146] Code ↔ Paper doi:10.1016/j.celrep.2026.117646 [paper, repository]

Medial entorhinal-hippocampal desynchronization parallels the emergence of memory impairment in a mouse model of Alzheimer's disease pathology.

Journal: Cell reports

Authors' code: ZachPenn/CellCounting (no license), buzsakilab/buzcode (GPL-3.0), Zenodo 20314327 (GPL-3.0), shumanlab/vetere-et-al-2026-cell-reports (GPL-3.0)

Status: code verified, 2,220 files readable, 14 matches

[147] Code ↔ Paper doi:10.1093/braincomms/fcag269 [paper, repository]

Distinct brain regions are affected by neurodevelopmental or pre-dementia changes in Down syndrome.

Journal: Brain communications

Authors' code: ricardomar/Lilia-journal-2026 (no license)

Status: code verified, 2 files readable

[148] Code ↔ Paper doi:10.3389/fbinf.2026.1858866 [paper, repository]

Comparative evaluation of reference-free transcriptomic deconvolution highlights the importance of biological validation in astrocytes across Alzheimer's disease.

Journal: Frontiers in bioinformatics

Authors' code: mangaritar/Deconvolution-Astrocyte (no license)

Status: empty repository, 1 file readable

Saturday, 11 July 2026 (1 paper)

[149] doi:10.3390/ijms27146196 [paper, data]

Investigation of the Potential Neuroprotective Mechanisms of <i>Acalypha indica</i> Against Alzheimer's Disease by Integrated Bioinformatics Analysis.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 10 July 2026 (5 papers)

[150] Code ↔ Paper doi:10.1016/j.tjpad.2026.100635 [paper, repository]

Can we identify people with Alzheimer's disease from examination of the eye? A bidirectional Mendelian randomization (MR) study.

Journal: The journal of prevention of Alzheimer's disease

Authors' code: HuKiser/Retinal_features_AD_MR (no license), bulik/ldsc (GPL-3.0)

Status: code verified, 29 files readable, 4 matches

[151] doi:10.1038/s41598-026-55178-5 [paper, data]

Novel approach to early prediction of alzheimer's disease progression using integrated deep regulatory genetic neural network and optimized deep belief networks.

Journal: Scientific reports

Status: data only, 1 dataset cited

[152] doi:10.1186/s12951-026-04551-7 [paper, data]

The role of AI-assisted drug repurposing in neurological disorders: a systematic review of validation strategies, challenges and opportunities.

Journal: Journal of nanobiotechnology

Status: data only, 1 dataset cited

[153] Code ↔ Paper doi:10.1162/imag.a.1290 [paper, repository]

Calibration of MRI-based reference intervals to new samples.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: andy1764/ReForm (no license)

Status: code verified, 3 files readable, 1 match

[154] doi:10.1016/j.apsb.2026.07.009 [paper, data]

Neutrophil-mediated BDNF delivery for the treatment of moderate to severe Alzheimer's disease.

Journal: Acta pharmaceutica Sinica. B

Status: data only, 1 dataset cited

Thursday, 9 July 2026 (2 papers)

[155] doi:10.1186/s40035-026-00563-3 [paper, data]

Protein kinase CK2α' as a dual modulator of neuroimmune signaling and synaptic dysfunction in tauopathy.

Journal: Translational neurodegeneration

Status: data only, 3 datasets cited

[156] doi:10.3389/fneur.2026.1794851 [paper, data]

Mitochondrial protein alterations in vascular dementia: evidence from Mendelian randomization, transcriptomics, and a chronic hypoperfusion model.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

Wednesday, 8 July 2026 (4 papers)

[157] Code ↔ Paper doi:10.1007/s00401-026-03039-w [paper, repository]

Correlative ultrastructural mapping of Lewy pathology reveals regional diversity in Parkinson's and dementia with Lewy bodies.

Journal: Acta neuropathologica

Authors' code: LBEM-CH/mitoanalyzer (GPL-3.0)

Status: code verified, 5 files readable

[158] doi:10.1038/s44400-026-00115-6 [paper, data]

Brain age gradients as intermediate phenotypes linking plasma p-tau217 to cognition in community-dwelling older adults.

Journal: NPJ dementia

Status: code on request, 1 dataset cited

[159] Code ↔ Paper doi:10.1093/braincomms/fcag257 [paper, repository]

Neuroplasticity and immune system are related to altered grey matter networks: a cohort study in sporadic Alzheimer's disease.

Journal: Brain communications

Authors' code: bettytijms/Single_Subject_Grey_Matter_Networks (MIT), sites.google.com/site/bctnet (no license)

Status: code verified, 15 files readable, 2 matches

[160] doi:10.3389/fimmu.2026.1845312 [paper, data]

Prenatal immune activation and adult Poly(I:C) re-challenge promote neuroimmune priming and AD-related behavioural, cellular and molecular alterations in wild-type mice.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

Tuesday, 7 July 2026 (2 papers)

[161] doi:10.1016/j.celrep.2026.117672 [paper]

Striatal neuron dysfunction in C9ORF72-FTD/ALS is driven by AIS and potassium channel dysregulation.

Journal: Cell reports

Status: code on request

[162] doi:10.1080/19491034.2026.2697135 [paper, data]

Elevation of the mechanically-sensitive e protein emerin links nuclear mechanotransduction to tau-induced cytoskeletal remodeling in neurons.

Journal: Nucleus (Austin, Tex.)

Status: data only, 1 dataset cited

Monday, 6 July 2026 (3 papers)

[163] doi:10.3390/biom16070992 [paper, data]

Molecular Networks and Key Regulators Underlying Resilience of the Human Brain to Aging and Dementia.

Journal: Biomolecules

Status: data only, 1 dataset cited

[164] doi:10.3389/fncom.2026.1834764 [paper, data]

Topology-aware hybrid graph-transformer network for Alzheimer's disease diagnosis from structural magnetic resonance imaging.

Journal: Frontiers in computational neuroscience

Status: code on request, 1 dataset cited

[165] doi:10.3389/fimmu.2026.1842398 [paper, data]

A multi-omics framework integrating gut microbiota, blood metabolites, and immune cells to elucidate the pathogenesis of Alzheimer's disease.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

Sunday, 5 July 2026 (1 paper)

[166] doi:10.3390/cimb48070691 [paper, data]

Astrocyte Subtype-Specific Expression of the Sodium-Coupled Citrate Transporter <i>SLC13A5</i> and Citrate Metabolism Genes Across Alzheimer's Disease Pseudoprogression: A Single-Nucleus RNA Sequencing Analysis of the Human Middle Temporal Gyrus.

Journal: Current issues in molecular biology

Status: code on request, 1 dataset cited

Saturday, 4 July 2026 (1 paper)

[167] Code ↔ Paper doi:10.1038/s41467-026-74957-2 [paper, repository]

Joint trajectories of brain atrophy, white matter hyperintensities and cognition quantify brain maintenance.

Journal: Nature communications

Authors' code: neuroprognosis/brain-maintenance-lgcm (GPL-3.0)

Status: code verified, 13 files readable, 1 match

Friday, 3 July 2026 (1 paper)

[168] doi:10.3389/fnut.2026.1830204 [paper]

Bias-reduced Regression Analysis in Nutrition (BRAiN) index: self-reported diet and predicted cognitive function.

Journal: Frontiers in nutrition

Status: code on request

Thursday, 2 July 2026 (3 papers)

[169] doi:10.1007/s12035-026-06014-4 [paper, data]

Hypothalamus Amyloid Levels Are Associated with Early Sex-Dependent Alterations in Peripheral Energy Homeostasis in TgF344-AD Rats.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[170] doi:10.3389/fgene.2026.1865257 [paper, data]

Disease-predominant loci across Alzheimer's disease, Parkinson's disease and Lewy body dementia: evidence from the UK Biobank prospective cohort, conditional GWAS and colocalization.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[171] doi:10.3389/fmicb.2026.1765044 [paper, data]

Integrating serum pharmacology, network pharmacology, and molecular biology analysis to reveal the mechanisms of Baihe Dihuang decoction in treating Alzheimer's disease.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

Wednesday, 1 July 2026 (15 papers)

[172] Code ↔ Paper doi:10.1093/brain/awag080 [paper, repository]

Early glymphatic failure in AppNL-F knock-in mice is linked to parenchymal border macrophages loss.

Journal: Brain : a journal of neurology

Authors' code: kswanberg/osv (no license)

Status: code verified, 30 files readable, 2 matches

[173] Code ↔ Paper doi:10.1111/apha.70264 [paper, repository]

Clustering Properties of Neuronal Ryanodine Receptor 2 and Remodeling in the APP/PS1 Mouse Model of Alzheimer's Disease.

Journal: Acta physiologica (Oxford, England)

Authors' code: david_baddeley/python-microscopy (no license)

Status: dead link

[174] Code ↔ Paper doi:10.1126/sciadv.adu9309 [paper, repository]

Variations of global brain asymmetry are associated with aging and related diseases.

Journal: Science advances

Authors' code: ThomasYeoLab/CBIG (MIT), Zenodo 15561190 (CC-BY-4.0)

Status: code verified, 2,000 files readable

[175] Code ↔ Paper doi:10.1038/s41591-026-04485-5 [paper, repository]

Blood-based circular RNAs for early diagnosis of Alzheimer's disease.

Journal: Nature medicine

Authors' code: neurogenomicsandinformatics/rnaseq_pipeline (no license)

Status: code verified, 10 files readable, 2 matches

[176] Code ↔ Paper doi:10.1002/alz.71630 [paper, repository]

Genetic architecture of the limbic white matter microstructure in aging and Alzheimer's Disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Zenodo 13863955 (CC-BY-4.0)

Status: code verified

[177] Code ↔ Paper doi:10.1002/alz.71649 [paper, repository]

Postmortem brain MRI reveals differential associations of subcortical and limbic volumes with cortical thinning and neurodegenerative pathologies.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Pulkit-Khandelwal/purple-mri (no license), Pulkit-Khandelwal/postmortem-subcortical-limbic-pathologies (no license)

Status: code verified, 74 files readable, 11 matches

[178] doi:10.1111/acel.70616 [paper]

Transcriptomic Evidence of Mitochondrial Double-Stranded RNA Accumulation in Brain Aging and Alzheimer's Disease.

Journal: Aging cell

Status: code on request

[179] doi:10.1002/cns.71021 [paper, data]

Multilayer Proteome and Metabolome-Based Validation Uncovers Combined Regulatory Roles and Predictive Values of 6 RNA Modifications and Cellular Senescence in Alzheimer's Disease.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[180] Code ↔ Paper doi:10.3389/fnagi.2026.1847611 [paper, repository]

APOE ε4-associated hippocampal atrophy trajectories across the Alzheimer's disease continuum: a systematic review, meta-analysis, and longitudinal validation.

Journal: Frontiers in aging neuroscience

Authors' code: wyqmath/admeta (no license)

Status: code verified, 4 files readable, 4 matches

[181] Code ↔ Paper doi:10.1093/bib/bbag411 [paper, repository]

Screening of cell-type-specific meta-programs for drug repurposing in Alzheimer's disease.

Journal: Briefings in bioinformatics

Authors' code: Zhangyx-q/AD_MPcode (no license)

Status: code verified, 9 files readable, 7 matches

[182] Code ↔ Paper doi:10.1002/trc2.70304 [paper, repository]

Thalamic volume alterations mediate glymphatic function and cognitive dysfunction in Alzheimer's disease.

Journal: Alzheimer's & dementia (New York, N. Y.)

Authors' code: OSF wgtn7 (no license)

Status: code verified, 2 files readable, 5 matches

[183] Code ↔ Paper doi:10.1002/dad2.70430 [paper, repository]

Benchmarking privacy and utility in synthetic tabular cohorts for Alzheimer's disease research.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: fwinzell/synthetic_ad (MIT)

Status: code verified, 32 files readable, 7 matches

[184] doi:10.1002/dad2.70475 [paper]

Plasma GFAP and language-network tau mediate the effect of amyloid burden on semantic fluency: A mediation analysis.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Status: code on request

[185] doi:10.1117/1.nph.13.3.035008 [paper]

Metabolism and oxygen tension in Alzheimer's disease mouse model using two-photon FLIM-PLIM microscopy.

Journal: Neurophotonics

Status: code on request

[186] doi:10.1002/dad2.70484 [paper]

AST/ALT, <i>APOE</i> ε4, and Alzheimer's disease progression: A longitudinal cohort study.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Status: code on request

Tuesday, 30 June 2026 (3 papers)

[187] doi:10.1016/j.celrep.2026.117599 [paper]

Immunotherapy with B28, an antibody to Aβ oligomers, potently decreases amyloid plaques, microgliosis, and memory decline in APP knock-in mice.

Journal: Cell reports

Status: code on request

[188] doi:10.1038/s41467-026-74775-6 [paper, data]

Select microbial metabolites promote tau aggregation in a murine tauopathy model.

Journal: Nature communications

Status: data only, 2 datasets cited

[189] doi:10.1016/j.isci.2026.116581 [paper]

Peripheral inflammation impairs glymphatic function, contributing to neurodegeneration in Alzheimer's disease.

Journal: iScience

Status: code on request

Monday, 29 June 2026 (4 papers)

[190] Code ↔ Paper doi:10.1371/journal.pgen.1012170 [paper, repository]

Genome wide association study meta-analysis of neuropathologic lesions of Alzheimer's disease and related dementias in a multi-site autopsy cohort.

Journal: PLoS genetics

Authors' code: beecham-lab/ADRD-Neuropathology-Scripts (MIT)

Status: code verified, 61 files readable, 4 matches

[191] Code ↔ Paper doi:10.1002/dad2.70406 [paper, repository]

Deep contrastive learning framework identifies cell-type-specific drug targets in Alzheimer's disease.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: yuxin212/CLARITY (no license), ChengF-Lab/CLARITY (no license)

Status: code verified, 56 files readable

[192] doi:10.3390/diagnostics16132029 [paper, data]

FLAME: Federated Learning and Aggregated Multi-Model Ensemble for Multi-Class Alzheimer's Disease Stage Classification from Structured Clinical Data.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[193] doi:10.1021/acsomega.6c01108 [paper, data]

"Behavioral and Neuroinflammatory Evaluation of a Novel Isoxazole-5-One Derivative in Animal Models of Alzheimer's Disease via TNF-α, COX-2, IL-6, and NF-κB Modulation".

Journal: ACS omega

Status: data only, 5 datasets cited

Saturday, 27 June 2026 (1 paper)

[194] doi:10.3390/antiox15070807 [paper, data]

Betaine Attenuates Hyperhomocysteinemia-Induced Cognitive Impairment by Suppressing Oxidative Stress and Activating the PI3K/AKT/GSK-3β Pathway.

Journal: Antioxidants (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 26 June 2026 (6 papers)

[195] Code ↔ Paper doi:10.1038/s41467-026-74515-w [paper, repository]

Advancing fair and explainable machine learning for neuroimaging dementia pattern classification in multi-racial and multi-ethnic populations.

Journal: Nature communications

Authors' code: UTHSCSA-NAL/explainable_and_fair_ML_for_ADRD (no license)

Status: code verified, 16 files readable, 8 matches

[196] Code ↔ Paper doi:10.1038/s41467-026-74817-z [paper, repository]

Early-Stage Corticostriatal Hyperactivity Impairs Cognitive Flexibility Alongside Striatal Cholinergic Dysfunction in an Alzheimer's Disease Model.

Journal: Nature communications

Authors' code: chen-ruifeng/ex-vivo-confocal (no license)

Status: code verified, 28 files readable

[197] doi:10.1186/s13024-026-00965-x [paper, data]

Early binding of anti-amyloid antibodies to CAA drives complement activation, inflammation and ARIA in mice.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[198] doi:10.3390/ijms27135758 [paper, data]

Diffusion Tensor Imaging Along the Perivascular Space (DTI-ALPS) as a Neuroimaging Biomarker of Glymphatic Function in Neurodegenerative Diseases: A Systematic Review.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[199] doi:10.1093/geroni/igag064 [paper, data]

BrainHealth 360: cognitive intervention for older adults designed using a participatory framework.

Journal: Innovation in aging

Status: data only, 1 dataset cited

[200] doi:10.7717/peerj-cs.3860 [paper, data]

Systematic review of unveiling the potential of AI using machine learning and deep learning methods in neurodegenerative diseases.

Journal: PeerJ. Computer science

Status: data only, 1 dataset cited

Thursday, 25 June 2026 (7 papers)

[201] Code ↔ Paper doi:10.1002/advs.76205 [paper, repository]

CHCHD10 Mitigates Alzheimer's Disease-Related Phenotypes in Association With Epigenetic Remodeling in Directly Reprogrammed Neurons.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: tliu203/CHCHD10-Alleviates-Alzheimer-s-Disease-Pathogenesis-by-Modulating-Epigenetic-Landscape- (MIT)

Status: code verified, 42 files readable, 22 matches

[202] Code ↔ Paper doi:10.1021/acs.analchem.6c03315 [paper, repository]

Profiling Protein Aggregate Size Using Single-Molecule Array Technology.

Journal: Analytical chemistry

Authors' code: Zenodo 20140389 (MIT), yingzhang1122/simoabrightnessanalysis (MIT)

Status: code verified, 4 files readable

[203] doi:10.1038/s41467-026-73802-w [paper, data]

Karyoptosis mediates cell death and neurodegeneration upon proteotoxic stress.

Journal: Nature communications

Status: data only, 12 datasets cited

[204] Code ↔ Paper doi:10.1186/s12967-026-08414-5 [paper, repository]

Integrative transcriptomic analysis identifies meningeal-hippocampal immune communication in Alzheimer's disease.

Journal: Journal of translational medicine

Authors' code: yccbio/ad (no license)

Status: empty repository

[205] Code ↔ Paper doi:10.1186/s40359-026-05043-x [paper, repository]

Reinforcement learning-driven adaptive game therapy for cognitive impairment patients with improved vision transformer based detection model.

Journal: BMC psychology

Authors' code: kaggle.com/code/ahmedashrafahmed (no license)

Status: dead link

[206] doi:10.1186/s13195-026-02119-z [paper, data]

Age-dependent diagnostic and correlational architecture of multiplex plasma biomarkers in Alzheimer's disease: a cross-ethnic, cross-platform validation study.

Journal: Alzheimer's research & therapy

Status: data only, 9 datasets cited

[207] doi:10.3389/frai.2026.1852196 [paper, data]

FuzzyFed-CNN: secure and explainable multimodal federated learning for early Alzheimer's diagnosis.

Journal: Frontiers in artificial intelligence

Status: data only, 2 datasets cited

Wednesday, 24 June 2026 (5 papers)

[208] doi:10.1007/s00401-026-03042-1 [paper]

Tau368 improves p-tau diagnostic accuracy for FTLD-tau from FTLD-TDP.

Journal: Acta neuropathologica

Status: code on request

[209] Code ↔ Paper doi:10.1038/s43587-026-01149-4 [paper, repository]

The blood metabolome of brain health in midlife and influences of genes, microbiome and exposome.

Journal: Nature aging

Authors' code: omics-x/BloodMetabolomics_Genes_Gut_Exposome (no license)

Status: code verified, 26 files readable, 22 matches

[210] doi:10.1002/gps3.70039 [paper, data]

Associations between wearable-device-measured daytime and nighttime light exposures and dementia risk: A prospective cohort study.

Journal: General psychiatry

Status: data only, 1 dataset cited

[211] Code ↔ Paper doi:10.1093/braincomms/fcag238 [paper, repository]

Substantia Nigra MRI markers are lower in Alzheimer's disease and are linked to general cognitive function.

Journal: Brain communications

Authors' code: frikro/SN-Novelty-Brain-Comm (no license)

Status: code verified, 7 files readable

[212] Code ↔ Paper doi:10.1093/braincomms/fcag236 [paper, repository]

Dynamic, state-dependent characteristics of cognitive fluctuations in Lewy body dementia: a magnetoencephalography study.

Journal: Brain communications

Authors' code: sadeqi60/MEG_HMM_LBD (no license)

Status: code verified, 23 files readable, 7 matches

Tuesday, 23 June 2026 (2 papers)

[213] Code ↔ Paper doi:10.1038/s41398-026-04199-9 [paper, repository]

Immune cell-specific genetic architecture of Alzheimer's disease revealed by multi-omics analysis for therapeutic target discovery and prioritization.

Journal: Translational psychiatry

Authors' code: DeepVasc-Lab/3-step_sceQTLMR (Apache-2.0)

Status: code verified, 3 files readable, 1 match

[214] doi:10.3389/fnins.2026.1849896 [paper, data]

Dynamic changes of gut microbiota during progression of three Alzheimer's disease mice models.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

Monday, 22 June 2026 (4 papers)

[215] doi:10.1002/advs.202524167 [paper, data]

Lilrb4a Suppression Reprograms Microglia to Mitigate APOE4-Associated Amyloid Plaques and Cerebral Amyloid Angiopathy in Association With a PPAR-Linked Pro-Clearance State.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[216] Code ↔ Paper doi:10.1038/s41467-026-74541-8 [paper, repository]

SECmeres outperform extracellular vesicles as potential blood RNA biomarkers for Alzheimer's disease.

Journal: Nature communications

Authors' code: eegk/EVP-RNA-outperforms-extracellular-vesicles-as-blood-biomarkers-for-Alzheimer-disease (no license)

Status: dead link

[217] doi:10.1186/s13195-026-02121-5 [paper, data]

HDAC7 acts as an astrocytic mediator of Aβ pathology that directly engages IKK to drive astrocyte neurotoxicity and neurodegeneration in Alzheimer's disease.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[218] Code ↔ Paper doi:10.1093/braincomms/fcag204 [paper, repository]

Altered rhythmic and arrhythmic electroencephalographic activity during non-rapid eye movement sleep in amnestic mild cognitive impairment.

Journal: Brain communications

Authors' code: AlexLaf11/eeg-nrem-amci (no license)

Status: code verified, 59 files readable

Saturday, 20 June 2026 (1 paper)

[219] doi:10.1038/s41598-026-54533-w [paper, data]

Hyperlipidemia induces hippocampal inflammation and loss of vascularity and can be rescued by silencing RIPK1.

Journal: Scientific reports

Status: data only, 1 dataset cited

Friday, 19 June 2026 (6 papers)

[220] doi:10.1126/sciadv.adz0887 [paper, data]

Neuronal YTHDF2 suppresses innate immune activation in Aβ pathology by promoting m<sup>6</sup>A-dependent decay of cytosolic mitochondrial mRNAs.

Journal: Science advances

Status: data only, 1 dataset cited

[221] doi:10.1038/s41467-026-74253-z [paper, data]

Disruption of the brain-spleen axis impairs monocyte-microglia communication and accelerates disease progression in a mouse model of amyloidosis.

Journal: Nature communications

Status: data only, 2 datasets cited

[222] doi:10.1186/s12987-026-00825-2 [paper, data]

Acute amyloid-β exposure disrupts insulin signaling in hCMEC/D3 blood-brain barrier endothelial cells.

Journal: Fluids and barriers of the CNS

Status: data only, 4 datasets cited

[223] doi:10.1038/s44400-026-00101-y [paper, data]

Functional network contributions to longitudinal tau spread in Posterior Cortical Atrophy.

Journal: NPJ dementia

Status: data only, 1 dataset cited

[224] Code ↔ Paper doi:10.1038/s44400-026-00094-8 [paper, repository]

Haplotype-resolved DNA methylation at the <i>APOE</i> locus identifies allele-specific epigenetic signatures relevant to Alzheimer's disease risk.

Journal: NPJ dementia

Authors' code: NIH-CARD/CARDlongread_data_standardization (no license), nih-card/scmaverics (other), NIH-CARD/APOE_CpG_methylation (no license)

Status: code verified, 95 files readable, 4 matches

[225] doi:10.3389/fimmu.2026.1867920 [paper, data]

A self-perpetuating neuron-intrinsic GSDMD-mtDNA-AIM2 inflammasome axis drives neuronal pyroptosis and cognitive impairment after traumatic brain injury.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

Thursday, 18 June 2026 (3 papers)

[226] Code ↔ Paper doi:10.1038/s41380-026-03686-1 [paper, repository]

Early oligodendrocyte dysfunction signature in Alzheimer's disease: Insights from DNA methylomics and transcriptomics.

Journal: Molecular psychiatry

Authors' code: CBettencourtLab/AD_OLGDNAm (no license)

Status: code verified, 6 files readable, 6 matches

[227] Code ↔ Paper doi:10.1186/s40478-026-02341-8 [paper, repository]

Intrathecal (G<sub>4</sub>C<sub>2</sub>)<sub>149</sub> delivery in C9orf72-deficient mice yields mild motor dysfunction and ALS/FTD pathological hallmarks.

Journal: Acta neuropathologica communications

Authors' code: figshare 32825642 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[228] Code ↔ Paper doi:10.3390/ijms27125533 [paper, repository]

Discovery-Driven Plasma Proteomics Identifies a Multi-Protein Signature for Amyloid PET Positivity: A Machine Learning Analysis of the Bio-Hermes Cohort.

Journal: International journal of molecular sciences

Authors' code: stelioslamprou37/SML_PipelineR (MIT)

Status: code verified, 3 files readable, 1 match

Wednesday, 17 June 2026 (3 papers)

[229] Code ↔ Paper doi:10.1016/j.tjpad.2026.100622 [paper, repository]

The time interval from amyloid to tau PET positivity varies by age, sex and APOE-ε4 status.

Journal: The journal of prevention of Alzheimer's disease

Authors' code: cind/Amyloid-tau-interval-paper-Mil--Alom- (no license), cind/Amyloid-tau-interval-paper-Mil-Alom (no license)

Status: code verified, 3 files readable, 2 matches

[230] doi:10.1186/s12883-026-05085-z [paper, data]

The use of routinely collected structural neuroimaging to identify cognitive impairment in multiple sclerosis.

Journal: BMC neurology

Status: data only, 1 dataset cited

[231] doi:10.3390/cells15121101 [paper, data]

Compensatory Intercellular Mitochondrial Transfer Improves Bioenergetics in P301L Tau-Affected Neuronal Cells.

Journal: Cells

Status: data only, 1 dataset cited

Tuesday, 16 June 2026 (8 papers)

[232] doi:10.1038/s41598-026-57069-1 [paper, data]

Explainable EEG-based machine learning for early diagnosis of Alzheimer's disease and frontotemporal dementia.

Journal: Scientific reports

Status: data only, 3 datasets cited

[233] doi:10.1186/s13195-026-02109-1 [paper]

Transcranial pulse stimulation modulates spectral signatures of Alzheimer's disease in the 3×Tg-AD mouse model.

Journal: Alzheimer's research & therapy

Status: code on request

[234] Code ↔ Paper doi:10.1172/jci190035 [paper, repository]

TGF-β signaling promotes astroglial activation and TDP-43 proteinopathy in organoid models of frontotemporal lobar degeneration.

Journal: The Journal of clinical investigation

Authors' code: Zenodo 20709533 (CC-BY-4.0), arrenramsey/ramsey_et_al_2026 (no license)

Status: code verified, 22 files readable, 16 matches

[235] doi:10.26508/lsa.202603668 [paper, data]

Differential A-to-I editing of SINE B2 RNAs unveils an epitranscriptome response to Aβ neurotoxicity.

Journal: Life science alliance

Status: data only, 1 dataset cited

[236] Code ↔ Paper doi:10.1186/s13040-026-00571-z [paper, repository]

DAG-VAERL: a novel causal inference method for building causal gene regulatory networks.

Journal: BioData mining

Authors' code: tenglong322/DAG-VAERL (no license)

Status: code verified, 11 files readable, 5 matches

[237] Code ↔ Paper doi:10.1186/s13073-026-01698-8 [paper, repository]

From aging to Alzheimer's disease: concordant brain DNA methylation changes in late life.

Journal: Genome medicine

Authors' code: TransBioInfoLab/AD-aging-brain-samples-analysis (MIT)

Status: code verified, 35 files readable, 13 matches

[238] Code ↔ Paper doi:10.3389/fnins.2026.1841093 [paper, repository]

Brain protein burden is related to intravoxel incoherent motion: PET-MR imaging study.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 20560360 (CC-BY-4.0), PostonLab/IVIM_fit (MIT)

Status: code verified, 52 files readable

[239] doi:10.3389/fimmu.2026.1798003 [paper, data]

HLA DP/DRA molecule regulates systemic inflammation and neuroinflammation, aggravates cognitive impairment and long-term anxiety in murine model of sepsis-associated encephalopathy.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

Monday, 15 June 2026 (5 papers)

[240] doi:10.1007/s00401-026-03035-0 [paper]

Expression of GPR34 in microglia remains stable in human Alzheimer's disease.

Journal: Acta neuropathologica

Status: code on request

[241] doi:10.1007/s00401-026-03036-z [paper, data]

Mechanisms of increased Alzheimer's disease pathology with R47H and R62H TREM2 variants.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[242] doi:10.3390/cells15121082 [paper, data]

Ketone-Dependent Restoration of Autophagy and Mitochondrial Quality Control Through VPS35 in a Drosophila Model of C99-Induced Neurodegeneration.

Journal: Cells

Status: code on request, 1 dataset cited

[243] Code ↔ Paper doi:10.3390/cells15121086 [paper, repository]

Investigating Alzheimer's Disease-Associated Genes Using Differential Splicing Frequency Analysis.

Journal: Cells

Authors' code: gaoshanT/Fastq_clean (no license)

Status: code verified, 49 files readable, 2 matches

[244] Code ↔ Paper doi:10.1080/10618600.2026.2639081 [paper, repository]

Probabilistic Joint and Individual Variation Explained (ProJIVE) for Data Integration.

Journal: Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America

Authors' code: thebrisklab/ProJIVE (other)

Status: code verified, 197 files readable, 5 matches

Sunday, 14 June 2026 (1 paper)

[245] doi:10.1038/s41598-026-54109-8 [paper, data]

A computational model to describe multi-regional brain architecture during neurodegeneration in Alzheimer's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

Saturday, 13 June 2026 (1 paper)

[246] doi:10.1186/s13195-026-02110-8 [paper]

Cognitive, biomarker, and neuroimaging indices associated with traumatic encephalopathy syndrome across two independent athlete cohorts.

Journal: Alzheimer's research & therapy

Status: code on request

Friday, 12 June 2026 (2 papers)

[247] Code ↔ Paper doi:10.1016/j.isci.2026.116394 [paper, repository]

A dual space MRI radiomic network signature for risk stratification and subtyping of mild cognitive impairment.

Journal: iScience

Authors' code: bearsyep/iscience_R2SN_radiomics (no license)

Status: code verified, 1 file readable, 1 match

[248] doi:10.1016/j.isci.2026.116292 [paper]

Sleeve gastrectomy improves cognition by enhancing central ERK/CREB/BDNF pathway through increased GIP secretion.

Journal: iScience

Status: code on request

Thursday, 11 June 2026 (3 papers)

[249] Code ↔ Paper doi:10.1016/j.isci.2026.116336 [paper, repository]

Transcriptomic signatures of synaptic loss in Alzheimer's disease.

Journal: iScience

Authors' code: Sahuhu-Sun/Imaging-transcriptomics (no license)

Status: code verified, 5 files readable, 2 matches

[250] Code ↔ Paper doi:10.1016/j.isci.2026.116008 [paper, repository]

Longitudinally altered default mode network and insula multimodal brain pattern in end-stage renal disease during sustained hemodialysis treatment.

Journal: iScience

Authors' code: adni.loni.usc.edu (no license), trendscenter.org/software/fit (no license)

Status: code verified

[251] doi:10.3389/fnagi.2026.1789422 [paper, data]

Short-term neurovascular and electrophysiological responses to combined visual and vibration stimulation in older adults with mild cognitive impairment.

Journal: Frontiers in aging neuroscience

Status: data only, 2 datasets cited

Wednesday, 10 June 2026 (5 papers)

[252] Code ↔ Paper doi:10.1161/jaha.125.046172 [paper, repository]

Cardiovascular Disease Subtypes and Alzheimer's Disease: Phenotypic and Genetic Associations in the UK Biobank and All of Us Research Program.

Journal: Journal of the American Heart Association

Authors' code: MIILab-MTU/CVDSubtypesADCorrelation (no license)

Status: code verified, 10 files readable, 8 matches

[253] doi:10.1038/s41380-026-03662-9 [paper, data]

Differential DNA methylation in blood as potential mediator of the association between ambient PM<sub>2.5</sub> and cerebrospinal fluid biomarkers of Alzheimer's disease among a cognitively normal population-based cohort.

Journal: Molecular psychiatry

Status: code on request, 1 dataset cited

[254] Code ↔ Paper doi:10.1038/s41593-026-02289-x [paper, repository]

Cerebellar aging is spatially heterogeneous and supports cognitive resilience in later life.

Journal: Nature neuroscience

Authors' code: fdoleireuquillas/AgingCerebellum (no license)

Status: code verified, 1 file readable, 4 matches

[255] doi:10.3389/fnagi.2026.1822185 [paper, data]

Sustained attention in dementia with Lewy bodies: a task-based fMRI study.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[256] Code ↔ Paper doi:10.7759/cureus.110620 [paper, repository]

Top-Cited Articles on Dysphagia and Cognitive Impairment: A Scopus-Based Bibliometric Analysis of Publications Retrieved Through October 2025.

Journal: Cureus

Authors' code: taynaud/python-louvain (BSD-3-Clause)

Status: code verified, 8 files readable

Tuesday, 9 June 2026 (5 papers)

[257] Code ↔ Paper doi:10.1002/advs.75969 [paper, repository]

Accurately Deciphering Tissue Heterogeneity From Spatial Multi-Modal and Multi-Omics With STransformer.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: xingyili/STransformer (no license)

Status: code verified, 18 files readable, 9 matches

[258] Code ↔ Paper doi:10.1038/s41467-026-74038-4 [paper, repository]

Semaglutide attenuates neuroinflammation in male mice.

Journal: Nature communications

Authors' code: perslab/Rausch-Ludwig-Bentsen-2026 (no license)

Status: code verified, 38 files readable, 20 matches

[259] Code ↔ Paper doi:10.1038/s43856-026-01707-2 [paper, repository]

Decreased amyloid-related structure-function coupling in preclinical Alzheimer's disease.

Journal: Communications medicine

Authors' code: rmarkello/abagen (BSD-3-Clause), gpreti/GSP_StructuralDecouplingIndex (Apache-2.0)

Status: code verified, 95 files readable, 9 matches

[260] Code ↔ Paper doi:10.1186/s12974-026-03897-x [paper, repository]

Ischemic injury triggers a protective microglial phenotype in models of Aβ pathology.

Journal: Journal of neuroinflammation

Authors' code: KJPMolgenLab/scSeq_Hefendehl (no license), gitlab.mpcdf.mpg.de/mpibr/scic/roioverstack (no license)

Status: code verified, 38 files readable, 3 matches

[261] doi:10.3389/fmed.2026.1849122 [paper, data]

An intelligent gradient-guided hybrid inpainting framework for brain MRI reconstruction and Alzheimer's disease classification in connected healthcare systems.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

Monday, 8 June 2026 (5 papers)

[262] Code ↔ Paper doi:10.1038/s41531-026-01412-w [paper, repository]

Network based statistics associates increased connectivity to REM sleep disorder and hallucinations in early DLB.

Journal: NPJ Parkinson's disease

Authors' code: elisabettavallarino/transfreq (BSD-3-Clause)

Status: code verified, 17 files readable, 1 match

[263] Code ↔ Paper doi:10.1038/s42003-026-10446-y [paper, repository]

Transcriptional analyses identify pericyte-centered signaling programs altered by sex and brain region in Alzheimer's Disease.

Journal: Communications biology

Authors' code: ccc-protocols.readthedocs.io (no license), Zenodo 16760785 (CC-BY-4.0)

Status: code verified

[264] Code ↔ Paper doi:10.1038/s41598-026-56387-8 [paper, repository]

Alterations in topological and dynamical parameters correlate with disease biomarkers and neuropsychological scores in prodromic stages of dementia.

Journal: Scientific reports

Authors' code: Anita-93/TVB_rww_tutorial (no license), wiki.ebrains.eu/bin/view (no license)

Status: code verified, 2 files readable, 1 match

[265] doi:10.1016/j.nbd.2026.107475 [paper, data]

Human TDP-43 expression worsens FTD-related phenotypes in progranulin-insufficient mice.

Journal: Neurobiology of disease

Status: data only, 2 datasets cited

[266] Code ↔ Paper doi:10.34133/csbj.0134 [paper, repository]

Integrated Multi-Tissue Transcriptomics Reveals Antagonistic Pleiotropy in Aging and Alzheimer's Disease.

Journal: Computational and structural biotechnology journal

Authors' code: salihoglu/Alzheimer_AP (no license)

Status: code verified, 15 files readable, 18 matches

Saturday, 6 June 2026 (3 papers)

[267] Code ↔ Paper doi:10.1016/j.celrep.2026.117505 [paper, repository]

Impaired spatial coding and neuronal hyperactivity in the medial entorhinal cortex of aged APP knock-in mice.

Journal: Cell reports

Authors' code: Zenodo 19040105 (CC-BY-4.0), klusta-team/klustakwik (no license), glmmTMB/glmmTMB (no license), florianhartig/DHARMa (gnu), hussainilab/rodriguez-et-al-cell-reports-2026 (no license)

Status: code verified, 365 files readable, 2 matches

[268] doi:10.1186/s13195-026-02107-3 [paper, data]

FKBP51 inhibition by SAFit2 modulates tau pathology and cognitive deficits in PS19 mice.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[269] Code ↔ Paper doi:10.1093/braincomms/fcag216 [paper, repository]

Affective and cognitive theory of mind and associated brain functional alterations in frontotemporal dementia.

Journal: Brain communications

Authors' code: SilviaBasaia/Theory-of-mind-in-frontotemporal-dementia (no license)

Status: code verified, 4 files readable, 1 match

Friday, 5 June 2026 (2 papers)

[270] Code ↔ Paper doi:10.1038/s41514-026-00397-3 [paper, repository]

Nasal administration of Protollin enhances monocyte phagocytosis and decreases CD8<sup>+</sup> T cell cytotoxicity in subjects with early Alzheimer's disease: a Phase 1 clinical trial.

Journal: npj aging

Authors' code: ronaldosfjunior/Kolypetri-et-al-2025 (no license)

Status: code verified, 6 files readable, 12 matches

[271] doi:10.1038/s41467-026-74037-5 [paper, data]

Microglial CD31 suppresses Aβ clearance and promotes Alzheimer pathology in 5×FAD mice.

Journal: Nature communications

Status: data only, 1 dataset cited

Thursday, 4 June 2026 (3 papers)

[272] Code ↔ Paper doi:10.64898/2026.06.03.26354793 [paper, repository]

Bayesian networks to estimate prognosis in vascular cognitive impairment and small vessel disease: integrated analyses of interdependent contributors to multiple outcomes

Journal: medRxiv (preprint)

Authors' code: umcu/vci-bayes (MIT)

Status: code verified, 22 files readable, 1 match

[273] Code ↔ Paper doi:10.1038/s41467-026-73902-7 [paper, repository]

GWAS on short tandem repeats identifies genetic mechanisms in Alzheimer's disease.

Journal: Nature communications

Authors' code: dgmelin/ukb_ad_str_gwas (GPL-3.0), Zenodo 19484860 (GPL-3.0), Zenodo 8365671 (CC-BY-4.0), gymrek-lab/ensembletr (no license)

Status: code verified, 92 files readable, 13 matches

[274] Code ↔ Paper doi:10.1038/s41598-026-55855-5 [paper, repository]

Byzantine robust federated learning for heterogeneous brain MRI using multisignal gradient fingerprinting and adaptive trust aggregation.

Journal: Scientific reports

Authors' code: mohammadkarami79/OptiGradTrust (MIT)

Status: code verified, 54 files readable, 32 matches

Wednesday, 3 June 2026 (6 papers)

[275] Code ↔ Paper doi:10.1038/s42003-026-10388-5 [paper, repository]

Hierarchical organization of tau topography across the Alzheimer's disease continuum integrates amyloid, connectome, and intrinsic molecular vulnerability.

Journal: Communications biology

Authors' code: Zenodo 20278594 (CC-BY-4.0)

Status: code verified

[276] Code ↔ Paper doi:10.1177/13872877261453512 [paper, repository]

Fluorescence spectroscopy and machine learning methods for detection of Alzheimer's disease from circulating white blood cells.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: Zenodo 18217440 (CC-BY-4.0)

Status: code verified, 1 file readable, 4 matches

[277] Code ↔ Paper doi:10.1007/s11033-026-11965-x [paper, repository]

Biological pathways related to mirna-125a-5p in behavioral variant of frontotemporal dementia.

Journal: Molecular biology reports

Authors' code: jessidpereira/Script-for-the-construction-of-the-gene-and-pathway-network-based-on-miRNA-125a-5p. (no license)

Status: code verified, 2 files readable

[278] doi:10.1007/s00401-026-03033-2 [paper, data]

AETA peptide contributes to Alzheimer's disease signature of synapse dysfunction.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[279] Code ↔ Paper doi:10.1186/s13195-026-02103-7 [paper, repository]

BIN1 gain-of-function in the presynaptic compartment leads to isoform-specific synaptotoxicity.

Journal: Alzheimer's research & therapy

Authors' code: yger/pre-post-drive (no license)

Status: code verified, 6 files readable

[280] doi:10.1186/s13024-026-00946-0 [paper, data]

Insulin resistance alters cortical inhibitory neurons and microglia to exacerbate Alzheimer's knock-in mouse phenotypes.

Journal: Molecular neurodegeneration

Status: data only, 7 datasets cited

Tuesday, 2 June 2026 (5 papers)

[281] doi:10.1007/s12035-026-05973-y [paper, data]

Integrative Transcriptomic, Network, and Machine Learning Analyses Identify Genistein and Resveratrol-Associated Therapeutic Targets in Alzheimer's Disease.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[282] doi:10.1038/s41380-026-03656-7 [paper, data]

Sex-specific regulation of angiogenin in Alzheimer's disease.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[283] Code ↔ Paper doi:10.1093/braincomms/fcag169 [paper, repository]

Clinicoanatomic localization of iron-rich gliosis in aphasic presentations of globular glial tauopathy.

Journal: Brain communications

Authors' code: picsl-ftdc-computational-pathology/ftdc_ggt_paper (no license)

Status: code verified, 2 files readable, 1 match

[284] Code ↔ Paper doi:10.1016/j.mex.2026.103986 [paper, repository]

A reproducible EEG-ERP methodology for assessing cognitive decline: integrating P300 latency and resting-state EEG frequency.

Journal: MethodsX

Authors' code: Zenodo 10614201 (CC-BY-4.0)

Status: empty repository

[285] Code ↔ Paper doi:10.3389/fbinf.2026.1816121 [paper, repository]

Transcriptome-informed metabolic modeling reveals astrocyte-specific vulnerabilities in mild cognitive impairment and Alzheimer's disease progression.

Journal: Frontiers in bioinformatics

Authors' code: mangaritar/Astrocyte-metabolic-modeling-MCI-AD (no license)

Status: code verified, 9 files readable, 1 match

Monday, 1 June 2026 (23 papers)

[286] Code ↔ Paper doi:10.1093/brain/awaf413 [paper, repository]

Estimating the time course of biomarker changes in Alzheimer's disease.

Journal: Brain : a journal of neurology

Authors' code: larslau/progmod (no license)

Status: code verified, 3 files readable, 2 matches

[287] doi:10.1093/sleep/zsag041 [paper, data]

Dim light at night impacts circadian rhythms and Alzheimer's disease-like neuroinflammation and neuropathology in humanized APP SAA knock-in mice.

Journal: Sleep

Status: data only, 1 dataset cited

[288] Code ↔ Paper doi:10.1093/jnen/nlaf152 [paper, repository]

Clinical and pathologic correlations of machine learning quantification of Aβ deposits across 3 brain regions of decedents with Alzheimer disease.

Journal: Journal of neuropathology and experimental neurology

Authors' code: ucdrubinet/BrainSec (GPL-3.0)

Status: code verified, 81 files readable, 1 match

[289] doi:10.1002/glia.70163 [paper, data]

A Cross-Disease Microglial Transcriptional Program Characterizes Neurodegeneration and Highlights SPP1 as a Biomarker.

Journal: Glia

Status: code on request, 2 datasets cited

[290] Code ↔ Paper doi:10.1093/bioinformatics/btag213 [paper, repository]

Interpretable deep survival analysis of Alzheimer's disease via metabolic genetic variants.

Journal: Bioinformatics (Oxford, England)

Authors' code: swgoo/dementia_xai_sa (MIT)

Status: code verified, 3 files readable, 5 matches

[291] Code ↔ Paper doi:10.1093/bioinformatics/btag253 [paper, repository]

PEARL: integrative multi-omics classification and omics feature discovery via deep graph learning.

Journal: Bioinformatics (Oxford, England)

Authors' code: zqq121017/PEARL (no license)

Status: code verified, 6 files readable, 3 matches

[292] Code ↔ Paper doi:10.1002/hbm.70546 [paper, repository]

ComBat-Predict Enhances Generalizability of Neuroimaging Models to New Sites.

Journal: Human brain mapping

Authors' code: andy1764/ComBatFamily (no license), ntustison/CrossLong (no license), brainchart/Lifespan (no license), Munchkin-233/ComBat-Predict_eval (no license)

Status: code verified, 100 files readable, 5 matches

[293] doi:10.1111/acel.70551 [paper]

Loss of Brain-Derived Estrogen Is Associated With Sex- and Age-Dependent Alterations in Memory, Affective Behavior, and Hippocampal Extracellular Matrix Gene Expression.

Journal: Aging cell

Status: data only

[294] Code ↔ Paper doi:10.1371/journal.pcbi.1014327 [paper, repository]

Supervised deep learning with gene functional annotation for cell classification.

Journal: PLoS computational biology

Authors' code: Sun-lab/SDAN (MIT)

Status: code verified, 79 files readable, 16 matches

[295] doi:10.1186/s12929-026-01257-8 [paper, data]

Distinct and combined interferon-ɑ/β-receptor-1 loss in neurons and astrocytes disrupt brain energy metabolism and drive Parkinsonian dementia.

Journal: Journal of biomedical science

Status: data only, 2 datasets cited

[296] Code ↔ Paper doi:10.1002/hbm.70548 [paper, repository]

Improved Multiscale Structural Mapping with Supervertex Vision Transformer for the Detection of Alzheimer's Disease Neurodegeneration.

Journal: Human brain mapping

Authors' code: labhai/MSSMplus (no license), adni.loni.usc.edu/wp-content/uploads (no license)

Status: code verified, 6 files readable, 1 match

[297] Code ↔ Paper doi:10.1002/alz.71530 [paper, repository]

Differential associations of plasma biomarkers with Alzheimer's disease and small vessel disease: A multimodal imaging study.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: miac-research/MARS-WMH (other)

Status: code verified, 9 files readable

[298] doi:10.1002/alz.71570 [paper]

Stable neuronal representations underlie cognitive resilience to Alzheimer's disease pathology.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[299] Code ↔ Paper doi:10.1002/alz.71587 [paper, repository]

Vulnerability of the locus coeruleus-entorhinal cortex white matter tract in autosomal dominant Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: mrtrix.readthedocs.io (no license)

Status: code verified

[300] Code ↔ Paper doi:10.1002/alz.71558 [paper, repository]

Allele specific expression in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: WangZishan/ADASE (MIT)

Status: code verified, 17 files readable, 13 matches

[301] doi:10.1002/alz.71547 [paper]

Cortical synchrony is reduced in Alzheimer's disease and relates to arousal state.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[302] Code ↔ Paper doi:10.1093/braincomms/fcag196 [paper, repository]

Music processing in behavioural variant frontotemporal dementia and Alzheimer's disease: a functional MRI study.

Journal: Brain communications

Authors' code: Jochumvanthooft/HARMONIA_braincommunications (no license)

Status: code verified, 1 file readable

[303] Code ↔ Paper doi:10.1002/alz.71571 [paper, repository]

Vulnerability of anterior medial temporal lobe subregions to early tau-related neurodegeneration in Alzheimer's disease: Converging evidence from tau-PET and plasma p-tau217.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: pyushkevich/cmrep (GPL-3.0)

Status: code verified, 104 files readable

[304] doi:10.1002/alz.71552 [paper, data]

APOE*4 risk-modifying genes and drug targets in Alzheimer's disease through cell-type-specific genomic analyses.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 2 datasets cited

[305] doi:10.1002/alz.71568 [paper, data]

HDL-mimetic peptide treatment reverses APOE4-induced transcriptomic and lipidomic alterations in the brain of humanized APOE mice.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[306] doi:10.1002/alz.71609 [paper, data]

Cortical gray-white matter contrast alterations precede amyloid-β positivity and macrostructural changes in older adults without dementia.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 2 datasets cited

[307] doi:10.4103/jmss.jmss_70_25 [paper, data]

Region-specific Transcriptomic Signatures in Alzheimer's Disease: A Meta-analysis of Vulnerable Brain Regions Reveals MicroRNA-hub Gene Regulatory Networks.

Journal: Journal of medical signals and sensors

Status: data only, 1 dataset cited

[308] Code ↔ Paper doi:10.11817/j.issn.1672-7347.2026.260137 [paper, repository]

Life<b>'</b>s Essential 10 and brain health: A prospective cohort study.

Journal: Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences

Authors' code: YSDun/LE10- (no license)

Status: dead link

Saturday, 30 May 2026 (1 paper)

[309] Code ↔ Paper doi:10.1002/mrm.70451 [paper, repository]

Atlas of Brain Glucose Metabolism Using Deuterium Metabolic Imaging at 3 T.

Journal: Magnetic resonance in medicine

Authors' code: figshare 31241707 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

Friday, 29 May 2026 (3 papers)

[310] doi:10.1186/s13293-026-00930-9 [paper, data]

Early, sex-dependent and progressive proteomic imbalance in the amygdala during Alzheimer´s disease continuum.

Journal: Biology of sex differences

Status: data only, 1 dataset cited

[311] doi:10.1186/s13195-026-02075-8 [paper, data]

Physical exercise in combination with audiovisual stimulation alleviates cognitive and affective impairments in Alzheimer's disease model mice via restoring lysosomal membrane integrity.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[312] Code ↔ Paper doi:10.1093/radadv/umag025 [paper, repository]

OpenMAP-BrainAge: generalizable and interpretable brain age predictor from MRI.

Journal: Radiology advances

Authors' code: OishiLab/OpenMAP-BrainAge (no license)

Status: code verified, 42 files readable, 7 matches

Thursday, 28 May 2026 (3 papers)

[313] doi:10.1186/s12974-026-03888-y [paper]

Integrated imaging and molecular profiling reveals APOE4-associated neurovascular and glial disruptions in young adult mice.

Journal: Journal of neuroinflammation

Status: code on request

[314] doi:10.1186/s13195-026-02086-5 [paper, data]

Examining the additive risk of TBI and comorbid conditions on dementia in military veterans: a retrospective cohort study.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[315] doi:10.3389/fninf.2026.1799307 [paper, data]

FUSION-AD: interpretable AI framework for risk assessment and subgroup discovery in Alzheimer's disease.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

Wednesday, 27 May 2026 (3 papers)

[316] doi:10.1007/s00259-026-07939-7 [paper]

Plasma phosphorylated tau biomarkers map onto [^18F]FDG PET hypometabolism: a voxel-wise study in a clinical cohort with CSF-confirmed AD subgroup analysis.

Journal: European journal of nuclear medicine and molecular imaging

Status: code on request

[317] Code ↔ Paper doi:10.1038/s41467-026-73071-7 [paper, repository]

Brain maintenance biomarkers from structural and functional interactions in aging and neurodegeneration.

Journal: Nature communications

Authors' code: Rainmon2020/Cognitive-Reserve (no license)

Status: code verified, 6 files readable, 2 matches

[318] Code ↔ Paper doi:10.1038/s41467-026-72875-x [paper, repository]

Lifespan normative modeling of brain microstructure.

Journal: Nature communications

Authors' code: villalonreina/ENIGMA-DTI-Normative-Modeling (GPL-3.0), ENIGMA-git/ENIGMA-DTI-Normative-Modeling (GPL-3.0)

Status: code verified, 34 files readable, 4 matches

Tuesday, 26 May 2026 (3 papers)

[319] Code ↔ Paper doi:10.1038/s41598-026-54552-7 [paper, repository]

EEG-based biomarker for the identification of mild cognitive impairment via coherency analysis and iterative dynamic time warping.

Journal: Scientific reports

Authors' code: minho17/EEG_IDTW (no license)

Status: code verified, 3 files readable

[320] Code ↔ Paper doi:10.1038/s44318-026-00818-9 [paper, repository]

FAM134B-mediated ER-phagy degrades APP and suppresses Alzheimer's disease pathology.

Journal: The EMBO journal

Authors' code: satijalab/seurat (other), drisso/SingleCellExperiment (no license), Bioconductor/GenomicRanges (no license), linnarsson-lab/loompy (BSD-2-Clause), scverse/scanpy (BSD-3-Clause)

Status: code verified, 379 files readable, 2 matches

[321] doi:10.3389/fnins.2026.1799542 [paper, data]

Disease-associated RNA and protein signatures in iPSC-derived microglia model of Alzheimer's disease.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

Monday, 25 May 2026 (4 papers)

[322] Code ↔ Paper doi:10.1002/mds.70355 [paper, repository]

Gray Matter Microstructure Measured Using Diffusion Imaging as a Biomarker of Severity in Lewy Body Diseases.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: AngelikaZa/GM_Microstructure (CC0-1.0)

Status: code verified, 12 files readable, 2 matches

[323] Code ↔ Paper doi: [paper, repository]

Diffusion-relaxation MRI as virtual histology: separable microstructural signatures of AD pathology in ex vivo human brain

Journal: Research square

Authors' code: pyushkevich/greedy (Apache-2.0), dan-benjamini/madco (no license)

Status: code verified, 854 files readable

[324] doi:10.1016/j.isci.2026.115994 [paper]

High intensity 40 Hz flicker improves amyloid pathology and cognition with autophagy in 3xTg mice.

Journal: iScience

Status: code on request

[325] doi:10.3390/ijms27114756 [paper, data]

Multi-Omics Integration and Causal Inference Identify HSD17B1 as a Potential Nobiletin Target Linking Neurosteroid Metabolism to Alzheimer's Disease.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Sunday, 24 May 2026 (1 paper)

[326] Code ↔ Paper doi:10.1080/19490976.2026.2676162 [paper, repository]

Microbiome functional gene pathways are indicative of cognitive performance in older adults at risk for Alzheimer's disease.

Journal: Gut microbes

Authors' code: biobakery/kneaddata (MIT)

Status: code verified, 30 files readable, 1 match

Saturday, 23 May 2026 (1 paper)

[327] Code ↔ Paper doi:10.1186/s13024-026-00956-y [paper, repository]

In vivo profiling of astrocyte secretome reveals brain-region specific regulatory networks in a mouse model of amyloid pathology.

Journal: Molecular neurodegeneration

Authors' code: Zenodo 20131790 (CC-BY-4.0)

Status: code verified, 8 files readable

Friday, 22 May 2026 (7 papers)

[328] Code ↔ Paper doi:10.2196/79141 [paper, repository]

Older Adults' Motivators and Barriers to Using Mindfulness Apps for Stress Management in Brain Health Interventions: Interview Study.

Journal: JMIR formative research

Authors' code: OSF n8yd3 (no license)

Status: empty repository

[329] doi:10.1038/s44318-026-00809-w [paper]

Genetic ablation of neuronal mitochondrial calcium uptake impedes Alzheimer's disease progression.

Journal: The EMBO journal

Status: data only

[330] doi:10.1186/s40478-026-02324-9 [paper, data]

Characterization of a distinct form of vimentin in the neurodegenerative brain.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[331] doi:10.1186/s13024-026-00948-y [paper, data]

Dual orexin receptor antagonism with lemborexant enhances microglial clearance of β-amyloid in mice.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[332] doi:10.64898/2026.05.20.26353580 [paper]

Association of pulse pressure with incidence of dementia independent of established risk factors

Journal: medRxiv (preprint)

Status: code on request

[333] doi:10.3389/fnmol.2026.1815858 [paper]

Mass spectrometry-based proteomic profiling of human tauopathy brains suggests mitochondria-associated alterations.

Journal: Frontiers in molecular neuroscience

Status: data only

[334] doi:10.3390/biology15110818 [paper]

Triptolide Reduces Cholesterol Synthesis and Alleviates Neuroinflammation by Inhibiting CD33 in Alzheimer's Disease Development and Progression.

Journal: Biology

Status: code on request

Thursday, 21 May 2026 (5 papers)

[335] doi:10.1038/s41419-026-08862-3 [paper]

O-GlcNAcylation reprograms microglial inflammatory states and attenuates Alzheimer's disease pathology.

Journal: Cell death & disease

Status: code on request

[336] Code ↔ Paper doi:10.1038/s42003-026-10205-z [paper, repository]

Source-space EEG alpha activity reveals brain age gaps due to neurodegeneration and disparity.

Journal: Communications biology

Authors' code: CompNeuroLabUSS/Alpha_Brain_Clocks (no license)

Status: code verified, 2 files readable, 1 match

[337] doi:10.1038/s43856-026-01670-y [paper]

Region-specific vulnerability to vascular risk factors and modifiable protective influences on white matter hyperintensities.

Journal: Communications medicine

Status: code on request

[338] Code ↔ Paper doi:10.1186/s13195-026-02079-4 [paper, repository]

Predicting future dementia from routine clinical MRI and linked healthcare data.

Journal: Alzheimer's research & therapy

Authors' code: HicResearch/PICTURES-DementiaClassifier (MIT), Zenodo 13921331 (CC-BY-4.0), Zenodo 7089491 (CC-BY-4.0)

Status: code verified, 15 files readable, 5 matches

[339] Code ↔ Paper doi:10.3390/s26103274 [paper, repository]

An EEG-Based Edge-AI Framework for Alzheimer's and Creutzfeldt-Jakob Disease Classification.

Journal: Sensors (Basel, Switzerland)

Authors' code: ai-lab-unirc/fair-nael-database (no license)

Status: code verified, 4 files readable, 3 matches

Wednesday, 20 May 2026 (8 papers)

[340] doi:10.1186/s13195-026-02074-9 [paper]

Metabolic parameter variability, brain structure, perfusion, and cognition: a population-based study.

Journal: Alzheimer's research & therapy

Status: code on request

[341] Code ↔ Paper doi:10.7554/elife.104778 [paper, repository]

Twelve phosphomimetic mutations induce the assembly of recombinant full-length human tau into paired helical filaments.

Journal: eLife

Authors' code: Zenodo 18236965 (CC-BY-4.0), Zenodo 18236945 (CC-BY-4.0), tkatsine/counting-protein-aggregates (no license), tkatsine/nuclear-counting (no license)

Status: code verified, 8 files readable

[342] doi:10.1007/s10238-026-02188-2 [paper, data]

Single-cell atlas reveals the key role of pro-inflammatory IREB2⁺ microglia subsets in the microenvironment of Alzheimer's disease.

Journal: Clinical and experimental medicine

Status: data only, 1 dataset cited

[343] doi:10.1016/j.tjpad.2026.100601 [paper]

Identification of a CD44-dependent control of astrocytic autophagic activity in Alzheimer's disease.

Journal: The journal of prevention of Alzheimer's disease

Status: code on request

[344] doi:10.1038/s41398-026-04064-9 [paper]

Stage-dependent reorganization of amyloid PET region-symptom bipartite networks in drug-naïve, amyloid-positive Alzheimer's disease.

Journal: Translational psychiatry

Status: code on request

[345] Code ↔ Paper doi:10.1038/s41467-026-73474-6 [paper, repository]

Dual platform spatial transcriptomics reveals parvalbumin interneuron subtype vulnerability in mouse models of Alzheimer's disease.

Journal: Nature communications

Authors' code: bioinformatics.ucalgary.ca/publications/mm-in-pvin (no license), UC-ASOC/SOTK (CC-BY-4.0), Zenodo 17834664 (CC-BY-4.0)

Status: code verified, 34 files readable, 13 matches

[346] Code ↔ Paper doi:10.1038/s42003-026-10335-4 [paper, repository]

Diurnal choroid plexus function in mice depends on sex, age, and amyloid-β status.

Journal: Communications biology

Authors' code: figshare 32129572 (CC-BY-4.0)

Status: code verified, 7 files readable, 9 matches

[347] doi:10.1016/j.isci.2026.116033 [paper]

Andrographolide attenuates microglial senescence in Alzheimer's disease mice by suppressing the STAT3 signaling.

Journal: iScience

Status: code on request

Tuesday, 19 May 2026 (3 papers)

[348] doi:10.1007/s10571-026-01726-6 [paper]

Gene Expression Analysis of Mitochondria-Associated Membrane (MAM)-Related Genes in ER Stress and Alzheimer's Disease.

Journal: Cellular and molecular neurobiology

Status: data only

[349] doi:10.1038/s41597-026-07461-3 [paper, data]

Multimodal ultra-high-field MRI, clinical, cognitive, and genetic profiles across the ALS-FTD spectrum.

Journal: Scientific data

Status: data only, 2 datasets cited

[350] Code ↔ Paper doi:10.1038/s42003-026-10282-0 [paper, repository]

Genetic risk of Alzheimer's disease is associated with loss of brain network segregation in midlife.

Journal: Communications biology

Authors' code: fengdeng315/Segregation_risk_age (no license)

Status: code verified, 3 files readable, 1 match

Monday, 18 May 2026 (6 papers)

[351] Code ↔ Paper doi:10.1007/s12149-026-02218-9 [paper, repository]

Whole-brain histogram analysis and top 20% gray and white matter ratio of amyloid positron emission tomography: A comparison with the centiloid scale.

Journal: Annals of nuclear medicine

Authors' code: MIC-DKFZ/HD-BET (Apache-2.0)

Status: code verified, 7 files readable

[352] Code ↔ Paper doi:10.1038/s43587-026-01121-2 [paper, repository]

Predicting categorical and continuous Alzheimer's disease outcomes from a single MRI scan.

Journal: Nature aging

Authors' code: Tencent/MedicalNet (MIT), darenma/MultitaskCognition (no license)

Status: code verified, 12 files readable

[353] Code ↔ Paper doi:10.1038/s41593-026-02267-3 [paper, repository]

Spatial proteomic analysis in human Alzheimer's disease brains enables identification of microenvironment-dependent microglial cell states.

Journal: Nature neuroscience

Authors' code: Teichlab/bbknn (MIT), LouisFaure/scFates (BSD-3-Clause), BaharehAjami/CODEX-CNS (no license)

Status: code verified, 68 files readable, 3 matches

[354] doi:10.1007/s11571-026-10464-w [paper, data]

The AHEPA EEG benchmark: setting the standard for machine learning in dementia diagnosis, a scoping review.

Journal: Cognitive neurodynamics

Status: data only, 2 datasets cited

[355] Code ↔ Paper doi:10.64898/2026.05.08.26352549 [paper, repository]

Pre- and Post-synapses Contain Lecanemab-reactive Amyloid-β in Post-mortem Human Alzheimer’s Disease Brain

Journal: medRxiv (preprint)

Authors' code: datashare.ed.ac.uk/handle/10283 (no license)

Status: code verified

[356] Code ↔ Paper doi:10.1093/braincomms/fcag176 [paper, repository]

Tau topography subtypes account for clinical heterogeneity and longitudinal trajectories in early-onset Alzheimer's disease.

Journal: Brain communications

Authors' code: rablabservice/EOAD_tauPET_subtype (MIT), Zenodo 837898 (other-open), tompollard/tableone (MIT)

Status: code verified, 73 files readable, 9 matches

Sunday, 17 May 2026 (1 paper)

[357] Code ↔ Paper doi:10.64898/2026.05.13.26353120 [paper, repository]

WITHDRAWN: Can glucagon like peptide-1 receptor agonists be beneficial for brain health?

Journal: medRxiv (preprint)

Authors' code: MetRXlab/spectra (no license)

Status: code verified, 8 files readable, 3 matches

Friday, 15 May 2026 (3 papers)

[358] doi:10.3892/ijmm.2026.5849 [paper]

miR‑223‑3p promotes microglial lactylation and M1 polarization via the FBXW7/Notch1/Hes1/SIRT1 axis.

Journal: International journal of molecular medicine

Status: data only

[359] Code ↔ Paper doi:10.1038/s41746-026-02732-0 [paper, repository]

A dynamic risk prediction framework for Alzheimer's disease and related dementias with interpretability.

Journal: NPJ digital medicine

Authors' code: PeterChe1990/GRU-D (MIT), ruanxiaoyang-ut/gru-d-retain (other)

Status: code verified, 15 files readable, 2 matches

[360] Code ↔ Paper doi:10.1177/11795972251404254 [paper, repository]

Blind Identification of Altered Functional Subnetworks in Alzheimer's Disease Using Resting-State fMRI.

Journal: Biomedical engineering and computational biology

Authors' code: ICA-RAICAR-Pruning/Code (no license)

Status: code verified, 2 files readable

Thursday, 14 May 2026 (4 papers)

[361] Code ↔ Paper doi:10.1038/s41467-026-73007-1 [paper, repository]

Single-nucleus epigenomic dysregulation unmasks genetic risk-associated neurodegenerative glia states.

Journal: Nature communications

Authors' code: rexachgroup/pci_snATAC (MIT), Zenodo 18904265 (MIT)

Status: code verified, 118 files readable, 28 matches

[362] Code ↔ Paper doi:10.1186/s13195-026-02081-w [paper, repository]

Cellular state heterogeneity underlying sex differences in Alzheimer's disease based on single-cell transcriptome.

Journal: Alzheimer's research & therapy

Authors' code: 327025640/AD-sex-difference (no license)

Status: code verified, 5 files readable, 7 matches

[363] doi:10.1016/j.stemcr.2026.102924 [paper]

PrP<sup>C</sup>-facilitated cell signaling activates phospholipase Cɣ1 and triggers an Arc/Arg3.1 response in mouse and iPSC-derived human neurons.

Journal: Stem cell reports

Status: code on request

[364] Code ↔ Paper doi:10.34133/csbj.0108 [paper, repository]

Latent Factor Modeling Reveals Unexpected Spatial Heterogeneity in Human Alzheimer's Disease Brain Transcriptomes.

Journal: Computational and structural biotechnology journal

Authors' code: LiuzLab/AD_LatentFactor (MIT)

Status: code verified, 6 files readable, 3 matches

Wednesday, 13 May 2026 (3 papers)

[365] Code ↔ Paper doi:10.1038/s41398-026-04081-8 [paper, repository]

Functional system-specific brain aging across the Alzheimer's disease continuum.

Journal: Translational psychiatry

Authors' code: xuanmer/NetworkBrainAge (MIT), xuanmer/StatisticalAnalysis (MIT)

Status: code verified, 18 files readable, 10 matches

[366] Code ↔ Paper doi:10.34133/csbj.0085 [paper, repository]

A Systems-Level Transcriptomic Framework Identifies Shared Cellular Hubs in Osteoarthritis and Alzheimer's Disease.

Journal: Computational and structural biotechnology journal

Authors' code: znGer-cel/Sender-and-Receiver-Cellular-Hubs-as-Potential-Therapeutic-Targets-in-OA-AD-Comorbidity (no license)

Status: code verified, 4 files readable, 19 matches

[367] Code ↔ Paper doi:10.3389/fnut.2026.1837406 [paper, repository]

MIND diet moderates the associations between cerebrovascular and neurodegenerative disease burden and cognition.

Journal: Frontiers in nutrition

Authors' code: desdemps/VioScreen-MIND-scoring-R (no license)

Status: code verified, 3 files readable, 2 matches

Tuesday, 12 May 2026 (3 papers)

[368] doi:10.1038/s42003-026-10134-x [paper, data]

Early α-synuclein-mediated mitochondrial dysfunction in a human cell model of Parkinson's disease dementia.

Journal: Communications biology

Status: data only, 1 dataset cited

[369] doi:10.3390/ijms27104325 [paper, data]

APOE4 Alters Early Transcriptional Programs and Inflammatory Signaling in Human Induced Pluripotent Stem Cells.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[370] doi:10.3389/fendo.2026.1819985 [paper, data]

Zinc oxide nanoparticles mitigate insulin resistance in a D-galactose-induced C57BL/6 mouse model.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

Monday, 11 May 2026 (2 papers)

[371] doi:10.1002/ana.78227 [paper]

Alzheimer's Disease Co-Pathology and Cognitive Impairment in Amyotrophic Lateral Sclerosis.

Journal: Annals of neurology

Status: code on request

[372] Code ↔ Paper doi:10.1038/s41598-026-51725-2 [paper, repository]

AI-powered evaluation of dementia severity based on clinical data and visual scoring systems (MTA, ERICA, GCA) from MRI.

Journal: Scientific reports

Authors' code: l-kuo/mri_visual_scores (MIT)

Status: code verified, 16 files readable, 5 matches

Saturday, 9 May 2026 (1 paper)

[373] Code ↔ Paper doi:10.1038/s41598-026-51854-8 [paper, repository]

Sound-evoked auditory neurophysiological signals are a window into prodromal functional differences in a preclinical model of Alzheimer's disease.

Journal: Scientific reports

Authors' code: Zenodo 6299560 (CC-BY-4.0)

Status: code verified, 1 file readable

Thursday, 7 May 2026 (5 papers)

[374] doi:10.1212/wnl.0000000000218031 [paper]

Acute Kidney Injury and Risk of Adverse Neurocognitive Outcomes: A Systematic Review and Meta-Analysis.

Journal: Neurology

Status: code on request

[375] doi:10.1186/s13195-026-02018-3 [paper, data]

Impact of Apolipoprotein E4 on blood-brain barrier integrity in target replacement murine models: a systematic review and meta-analysis.

Journal: Alzheimer's research & therapy

Status: code on request, 1 dataset cited

[376] Code ↔ Paper doi:10.1016/j.isci.2026.115638 [paper, repository]

Genome-scale metabolic modeling uncovers cell-type specific signatures associated with APOE variants.

Journal: iScience

Authors' code: Zenodo 16037670 (CC-BY-4.0)

Status: code verified, 5 files readable, 3 matches

[377] doi:10.1016/j.ynirp.2026.100351 [paper]

3D quantitative MRI for cognitive performance: T1 relaxation times of the right putamen and volumes of the left hippocampus as key biomarkers.

Journal: Neuroimage. Reports

Status: code on request

[378] Code ↔ Paper doi:10.64898/2026.05.06.26352540 [paper, repository]

Generating synthetic tau-PET scans in Alzheimer’s disease from MRI, blood biomarkers and demographics with deep learning

Journal: medRxiv (preprint)

Authors' code: DeMONLab-BioFINDER/karlsson_synthetic_taupet (CC-BY-NC-4.0)

Status: code verified, 22 files readable, 7 matches

Wednesday, 6 May 2026 (2 papers)

[379] Code ↔ Paper doi:10.1371/journal.pone.0344600 [paper, repository]

Robust disease prognosis via diagnostic knowledge preservation: A sequential learning approach.

Journal: PloS one

Authors' code: denizlab/diag-to-prog-replay (CC-BY-NC-4.0)

Status: code verified, 59 files readable, 5 matches

[380] doi:10.1155/humu/2963117 [paper, data]

Construction of a Diagnostic Model and Drug Prediction for Postischemic Stroke Cognitive Impairment Based on Machine Learning Screening of Lactate Metabolism- and Pyroptosis-Related Genes.

Journal: Human mutation

Status: data only, 1 dataset cited

Tuesday, 5 May 2026 (2 papers)

[381] Code ↔ Paper doi:10.1093/braincomms/fcag161 [paper, repository]

Functional neuroanatomy of musical object processing in Alzheimer's disease and frontotemporal dementia.

Journal: Brain communications

Authors' code: OSF azcf7 (no license)

Status: code verified, 5 files readable, 4 matches

[382] doi:10.3389/fnins.2026.1805957 [paper, data]

Treadmill training induces sex-dependent changes in hippocampal epigenetic patterns and plaque-associated microglial morphology in aged TgF344 rats.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

Monday, 4 May 2026 (3 papers)

[383] Code ↔ Paper doi:10.21203/rs.3.rs-9499814/v1 [paper, repository]

Plasma proteomics link menopause timing to brain aging and dementia risk

Journal: Research Square (preprint)

Authors' code: edammer/GOparallel (MIT)

Status: code verified, 3 files readable

[384] doi:10.1002/acn3.70423 [paper]

Impact of Plasma p-tau181 on Cognition, Motor Phenotypes, and Disease Course in ALS.

Journal: Annals of clinical and translational neurology

Status: code on request

[385] doi:10.1371/journal.pone.0348596 [paper, data]

Reducing annotation burden in medical imaging with ADGNET: A semi-supervised deep learning strategy.

Journal: PloS one

Status: data only, 1 dataset cited

Friday, 1 May 2026 (10 papers)

[386] doi:10.1093/brain/awag015 [paper, data]

Brainstem pathology in anti-IgLON5 disease: new insights into early events and tau progression.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[387] Code ↔ Paper doi:10.1002/hipo.70100 [paper, repository]

Dissociable Mechanisms Underlie Differences Between Memory and Metamemory in Older Adults: The Differentiating Role of Anxiety and Depression Symptoms.

Journal: Hippocampus

Authors' code: OSF 6et32 (no license)

Status: code verified, 2 files readable, 5 matches

[388] doi:10.1002/brb3.71410 [paper]

Structural Volumetric Alterations in Parkinson's Disease With Mild Cognitive Impairment.

Journal: Brain and behavior

Status: code on request

[389] Code ↔ Paper doi:10.1002/alz.71440 [paper, repository]

Cognitive reserve and longitudinal changes in brain and cognition in semantic variant primary progressive aphasia.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: jmjvonk (no license)

Status: code verified

[390] doi:10.1002/cns.70848 [paper]

Non-Invasive Temporal Interference Electrical Stimulation Modulates Neurotransmitter Release and Improves Aberrant Neural Oscillations in Alzheimer's Disease.

Journal: CNS neuroscience & therapeutics

Status: code on request

[391] doi:10.1111/acel.70494 [paper]

Exceptional Longevity Modifying Allele APOE2 Promotes DNA Signaling Pathways Resisting Cellular Senescence in Human Neurons.

Journal: Aging cell

Status: data only

[392] doi:10.1002/alz.71453 [paper]

Correlation between in vivo <sup>18</sup>F-flortaucipir PET and whole-brain postmortem histological tau signals in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[393] Code ↔ Paper doi:10.1002/alz.71471 [paper, repository]

How does type 2 diabetes modify the risk of Alzheimer's disease?

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: github.sydney.edu.au/sydney-brainomics/t2d-ad-review (no license)

Status: code verified

[394] Code ↔ Paper doi:10.3390/bios16050258 [paper, repository]

A Two-Stage EEG Microstate Fusion Framework for Dementia Screening and Alzheimer's Disease/Frontotemporal Dementia Differentiation.

Journal: Biosensors

Authors' code: winnile520-sys/AD-FTD-HC-data-and-code (no license)

Status: dead link

[395] Code ↔ Paper doi:10.1093/bib/bbag275 [paper, repository]

Nonlinear kernel-based high-dimensional inference for set-based genetic association studies.

Journal: Briefings in bioinformatics

Authors' code: zhangzechen123/NL-HSIM (MIT)

Status: code verified, 41 files readable, 1 match

Friday, 24 April 2026 (2 papers)

[396] doi:10.3389/fgene.2026.1795752 [paper, data]

Leveraging Hamiltonian neural flow for robust single-cell multi-omics integration: application to Alzheimer's disease.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[397] Code ↔ Paper doi:10.64898/2026.04.23.26351500 [paper, repository]

Plasma proteomics link menopause timing to brain aging and dementia risk

Journal: medRxiv (preprint)

Authors' code: edammer/GOparallel (MIT)

Status: code verified, 3 files readable

Thursday, 23 April 2026 (2 papers)

[398] Code ↔ Paper doi:10.1038/s41746-026-02597-3 [paper, repository]

Decoupling MCI-specific signatures from shared neurobiological substrates of cognitive aging via deep learning.

Journal: NPJ digital medicine

Authors' code: pppppby/CVAE-MCI (no license)

Status: empty repository

[399] Code ↔ Paper doi:10.1038/s41593-026-02260-w [paper, repository]

Early dopamine disruption in the entorhinal cortex of a knock-in model of Alzheimer's disease.

Journal: Nature neuroscience

Authors' code: igarashilab.org/resource (no license)

Status: code verified

Wednesday, 22 April 2026 (6 papers)

[400] doi:10.1038/s41467-026-71736-x [paper, data]

CK2 inhibition suppresses glial inflammation in models of neuroinflammation and neurodegeneration.

Journal: Nature communications

Status: data only, 2 datasets cited

[401] doi:10.1007/s00401-026-03018-1 [paper, data]

Tau oligomerization induces nuclear lamina invagination and chromatin remodeling in Alzheimer's disease.

Journal: Acta neuropathologica

Status: code on request, 1 dataset cited

[402] Code ↔ Paper doi:10.1038/s42003-026-10030-4 [paper, repository]

Cell-type-aware transcriptome-wide association studies identify 91 independent risk genes for Alzheimer's disease dementia.

Journal: Communications biology

Authors' code: Leo-LiuQiang/CTA-TWAS (no license), Zenodo 18994273 (CC-BY-4.0)

Status: code verified, 17 files readable, 2 matches

[403] Code ↔ Paper doi:10.1038/s41586-026-10414-w [paper, repository]

Focal white matter lesions drive grey matter inflammation and synapse loss.

Journal: Nature

Authors' code: Castelo-Branco-lab/Karadottir_DBiT_2025 (no license)

Status: code verified, 6 files readable, 10 matches

[404] doi:10.3389/fnagi.2026.1761218 [paper, data]

Integrated transcriptomic profiling combined with <i>in vitro</i> validation reveals the involvement of TMEM140 in the link between periodontitis and brain aging.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[405] Code ↔ Paper doi:10.3389/fnagi.2026.1730265 [paper, repository]

APOE ε4 as a predictor of cognitive decline and its interaction with hippocampal volume in Alzheimer's disease.

Journal: Frontiers in aging neuroscience

Authors' code: FaizaanFazal/adni-apoe4-hippocampus-cognitive-decline (MIT)

Status: code verified, 8 files readable, 20 matches

Tuesday, 21 April 2026 (3 papers)

[406] Code ↔ Paper doi:10.1038/s41467-026-71682-8 [paper, repository]

GWAS meta-analysis of cerebrospinal fluid Alzheimer's biomarkers reveals loci regulating lipids, brain volume and autophagy.

Journal: Nature communications

Authors' code: NeuroGenomicsAndInformatics/GWAS-project (no license), Zenodo 17780074 (CC-BY-4.0), bulik/ldsc (GPL-3.0), xtonyjiang/GNOVA (GPL-3.0), jigyasha-timsina/gwas-project (no license)

Status: code verified, 61 files readable, 7 matches

[407] Code ↔ Paper doi:10.1038/s41514-026-00390-w [paper, repository]

Mild cognitive impairment cases affect the predictive power of Alzheimer's disease diagnostic models using routine clinical variables.

Journal: npj aging

Authors' code: Art83/adni_mci (no license)

Status: code verified, 17 files readable, 6 matches

[408] Code ↔ Paper doi:10.1186/s13059-026-04069-z [paper, repository]

SpaNiche: spatial niche analysis to explore colocalization patterns and cellular interactions in spatial transcriptomics data.

Journal: Genome biology

Authors' code: SiyuanHuang1/SpaNiche (other), Zenodo 19179447 (MIT)

Status: code verified, 48 files readable, 12 matches

Monday, 20 April 2026 (6 papers)

[409] Code ↔ Paper doi:10.1523/eneuro.0468-25.2026 [paper, repository]

A Multi-Network Approach Identifies Proteins Related to Dendritic Spines in Alzheimer's Disease.

Journal: eNeuro

Authors' code: ehobby33/eNeuro-repo (MIT)

Status: code verified, 3 files readable, 9 matches

[410] doi:10.1371/journal.pone.0347532 [paper, data]

Deciphering the molecular network of Trichostatin A in regulating Alzheimer's disease screening of core genes and mechanistic investigation based on multidimensional bioinformatics and molecular simulation.

Journal: PloS one

Status: data only, 1 dataset cited

[411] Code ↔ Paper doi:10.1038/s43587-026-01106-1 [paper, repository]

Repurposing drugs for the prevention of vascular dementia using evidence from drug target Mendelian randomization.

Journal: Nature aging

Authors' code: Zenodo 15190762 (MIT), victoriatb/vad_dtmr2025 (MIT)

Status: code verified, 14 files readable, 4 matches

[412] doi:10.1186/s11556-026-00410-4 [paper]

Not just how much, but how it's done: movement activity bout distributions and everyday cognition in older adults with elevated dementia risk.

Journal: European review of aging and physical activity : official journal of the European Group for Research into Elderly and Physical Activity

Status: code on request

[413] doi:10.3389/fmed.2026.1811410 [paper]

<i>Epimedium</i> attenuates neuroinflammation and ameliorates Alzheimer's disease through a KAT2B-dependent mechanism.

Journal: Frontiers in medicine

Status: data only

[414] doi:10.1016/j.isci.2026.115819 [paper]

Exposure to fibrillar proteins leads to widespread infiltration but only mild tau pathology in cortical organoids.

Journal: iScience

Status: code on request

Sunday, 19 April 2026 (1 paper)

[415] Code ↔ Paper doi:10.1002/dad2.70333 [paper, repository]

Associations of plasma phosphorylated tau217 with cognitive impairment and brain microstructural alterations in Alzheimer's disease.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: ejcanalesr/multicomponent-T2-toolbox (no license)

Status: code verified, 29 files readable, 6 matches

Saturday, 18 April 2026 (1 paper)

[416] doi:10.1007/s11357-026-02255-2 [paper]

Map-based spatial perspective taking reveals frontal late negativity loss and posterior delta gain in mild cognitive impairment.

Journal: GeroScience

Status: code on request

Friday, 17 April 2026 (2 papers)

[417] Code ↔ Paper doi:10.1038/s41467-026-71831-z [paper, repository]

Dysfunction of the episodic memory network in the Alzheimer's disease cascade.

Journal: Nature communications

Authors' code: gitlab.inria.fr/epione/gp_progression_model_v2 (other), renelattmann/EMN_dysfunction (no license)

Status: code verified, 17 files readable, 3 matches

[418] Code ↔ Paper doi:10.3390/brainsci16040421 [paper, repository]

MambaKAN: An Interpretable Framework for Alzheimer's Disease Diagnosis via Selective State Space Modeling of Dynamic Functional Connectivity.

Journal: Brain sciences

Authors' code: l1binn/MambaKAN (no license)

Status: code verified, 10 files readable, 17 matches

Thursday, 16 April 2026 (4 papers)

[419] doi:10.1002/14651858.cd016297 [paper]

Amyloid-beta-targeting monoclonal antibodies for people with mild cognitive impairment or mild dementia due to Alzheimer's disease.

Journal: The Cochrane database of systematic reviews

Status: code on request

[420] doi:10.1038/s41531-026-01355-2 [paper]

Regional gene expression and brain atrophy in dementia with Lewy bodies: an imaging transcriptomics study.

Journal: NPJ Parkinson's disease

Status: code on request

[421] doi:10.1186/s12974-026-03800-8 [paper, data]

CMV titer associations with cognition and the plasma proteome implicate FLT1 and neurovascular mechanisms as potential moderators.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[422] Code ↔ Paper doi:10.3390/diagnostics16081186 [paper, repository]

The Perioperative Neurocognitive Disorder Prediction Based on AI-Assisted EEG Dynamic Features in Anesthetized Mice.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: JingweiToo/EEG-Feature-Extraction-Toolbox (BSD-3-Clause), cran.r-project.org/package=xgboost (no license)

Status: code verified, 34 files readable, 4 matches

Wednesday, 15 April 2026 (7 papers)

[423] doi:10.1159/000551193 [paper, data]

Intracranial Arterial Calcification on Computed Tomography and Risk of Cognitive Impairment or Dementia: A Systematic Review and Meta-Analysis.

Journal: Cerebrovascular diseases (Basel, Switzerland)

Status: data only, 1 dataset cited

[424] doi:10.1038/s12276-026-01684-5 [paper, data]

Human brain and organoid transcriptomes reveal key receptor tyrosine kinase pathways and genetic signatures in Alzheimer's disease.

Journal: Experimental & molecular medicine

Status: data only, 1 dataset cited

[425] Code ↔ Paper doi:10.1038/s41588-026-02570-6 [paper, repository]

Somatic mosaicism in ALS and FTD identifies focal mutations associated with widespread degeneration.

Journal: Nature genetics

Authors' code: AugustHuang/RNA-MosaicHunter (no license), kimjh607/ALS-FTD-somatic-mosaicism (no license), Zenodo 18682277 (CC-BY-4.0)

Status: code verified, 62 files readable, 11 matches

[426] Code ↔ Paper doi:10.1016/j.nicl.2026.103994 [paper, repository]

Mapping the multiscale neuroanatomy of GRN-related frontotemporal dementia using mode-based morphometry.

Journal: NeuroImage. Clinical

Authors' code: NSBLab/MBM (Apache-2.0)

Status: code verified, 328 files readable, 4 matches

[427] doi:10.3389/fnins.2026.1771310 [paper, data]

Oleic acid improves pathological changes in Aβ1-42-induced astrocytes and Alzheimer's disease mouse models through PKA/ACACB/CPT1A.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[428] doi:10.12779/dnd.2026.25.2.115 [paper, data]

Effects of Sarcopenia and Frailty on Cognitive Function, Brain Volume, and Dementia Risk: A Prospective Cohort Study Based on UK Biobank.

Journal: Dementia and neurocognitive disorders

Status: data only, 1 dataset cited

[429] Code ↔ Paper doi:10.1016/j.isci.2026.115747 [paper, repository]

Realistic PET image synthesis from MRI for automated inference of brain atrophy and Alzheimer's.

Journal: iScience

Authors' code: Zenodo 15089724 (CC-BY-4.0), btheodorou99/MRI2PET (MIT)

Status: code verified, 124 files readable, 13 matches

Tuesday, 14 April 2026 (4 papers)

[430] Code ↔ Paper doi:10.1007/s11357-026-02195-x [paper, repository]

The aging epigenome: integrative analyses reveal intersection with Alzheimer's disease.

Journal: GeroScience

Authors' code: TransBioInfoLab/AD-Aging-blood-sample-analysis (MIT)

Status: code verified, 16 files readable, 6 matches

[431] doi:10.1038/s41467-026-71826-w [paper, data]

Signaling cascades shape functional subpopulations of cortical astrocytes in male wild-type mice and APP/PS1dE9 Alzheimer's disease model.

Journal: Nature communications

Status: data only, 1 dataset cited

[432] doi:10.1038/s44321-026-00421-9 [paper, data]

Targeted cellular micropharmacies deliver therapeutic agents to the brain.

Journal: EMBO molecular medicine

Status: data only, 2 datasets cited

[433] Code ↔ Paper doi:10.1016/j.nbd.2026.107379 [paper, repository]

DYRK1A and Parkinson's disease, facts and hypotheses.

Journal: Neurobiology of disease

Authors' code: neurogenetics/GWAS_locus_browser (GPL-3.0)

Status: code verified, 65 files readable

Monday, 13 April 2026 (5 papers)

[434] doi:10.1002/advs.202523511 [paper, data]

Alzheimer's Disease Risk Factor APOE4 Exerts Dimorphic Effects on Female Bone.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[435] Code ↔ Paper doi:10.1186/s13024-026-00942-4 [paper, repository]

Regional diffusion imaging measures to disentangle SVD-related hypertensive arteriopathy versus cerebral amyloid angiopathy.

Journal: Molecular neurodegeneration

Authors' code: psmd-marker.com (no license)

Status: code verified

[436] doi:10.1162/imag.a.1205 [paper]

Dissecting medial temporal lobe from diencephalic sub-volumes: The amnesia dichotomy revisited.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[437] Code ↔ Paper doi:10.3389/fnins.2026.1775047 [paper, repository]

A multimodal imaging-based integrative framework for HIV-associated cognitive impairment and treatment response.

Journal: Frontiers in neuroscience

Authors' code: cMadan/calcFD (GPL-3.0)

Status: code verified, 13 files readable, 2 matches

[438] doi:10.3389/fnbeh.2026.1812480 [paper, data]

Oropharyngeal dysphagia and amyloid beta pathology in the TgF344-AD rat model of Alzheimer's disease.

Journal: Frontiers in behavioral neuroscience

Status: data only, 1 dataset cited

Sunday, 12 April 2026 (1 paper)

[439] doi:10.3390/biom16040570 [paper, data]

Variecolactone, a Natural PDE4 Inhibitor from Marine-Derived <i>Talaromyces</i> sp. ZSD-1, Alleviates Amyloid-β Accumulation and mtDNA Dyshomeostasis via cAMP-PKA-CREB Signaling Pathway.

Journal: Biomolecules

Status: data only, 1 dataset cited

Saturday, 11 April 2026 (3 papers)

[440] Code ↔ Paper doi:10.1186/s12967-026-08098-x [paper, repository]

Targeting the astrocyte-microglia EFEMP1-GALNT10 axis: a spatially programmable therapeutic strategy for hippocampal vulnerability in Alzheimer's disease.

Journal: Journal of translational medicine

Authors' code: DrLiu-jt/snRNA-SMR (no license)

Status: dead link

[441] doi:10.1038/s41380-026-03592-6 [paper, data]

Pyrazole-derived TRPC3 antagonist ameliorates synaptic dysfunctions and memory deficits in Alzheimer's disease models.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[442] doi:10.3390/ijms27083430 [paper, data]

Metatranscriptomic Reanalysis of Alzheimer's Brains Identifies Low-Biomass Microbial Signals Including Enrichment of <i>Acinetobacter radioresistens</i>.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 10 April 2026 (1 paper)

[443] doi:10.1093/braincomms/fcag128 [paper, data]

EEG-motor correlation as early Alzheimer's disease index in herpes simplex virus type-1-infected mice.

Journal: Brain communications

Status: data only, 1 dataset cited

Thursday, 9 April 2026 (5 papers)

[444] Code ↔ Paper doi:10.1038/s41598-026-47047-y [paper, repository]

Imaging-genetics-based dementia risk prediction using deep survival neural networks in the Rotterdam Study.

Journal: Scientific reports

Authors' code: yyyuj/Deep_Survival (no license)

Status: code verified, 29 files readable, 6 matches

[445] Code ↔ Paper doi:10.1038/s41467-026-71732-1 [paper, repository]

Trajectories of plasma and CSF MTBR-tau243 and phosphorylated-tau species across the Alzheimer's disease continuum.

Journal: Nature communications

Authors' code: Betthauser-Neuro-Lab/SILA-AD-Biomarker (GPL-3.0)

Status: code verified, 11 files readable, 2 matches

[446] Code ↔ Paper doi:10.1186/s12889-026-27289-1 [paper, repository]

UK dementia prevention policies and initiatives across the life-course: a scoping review (2009-2024).

Journal: BMC public health

Authors' code: OSF k89uf (no license)

Status: code found, not verified yet

[447] doi:10.1016/j.neuroimage.2026.121920 [paper]

Test-retest reliability of FreeSurfer measures of neurodegeneration.

Journal: NeuroImage

Status: code on request

[448] doi:10.3389/frai.2026.1777236 [paper, data]

Design of a deep learning prediction model for Alzheimer's and Parkinson's Disease using MRI images.

Journal: Frontiers in artificial intelligence

Status: data only, 1 dataset cited

Tuesday, 7 April 2026 (4 papers)

[449] Code ↔ Paper doi:10.1038/s41467-026-71112-9 [paper, repository]

Modelling synaptic dysfunction in childhood dementia using human iPSC-derived cortical networks.

Journal: Nature communications

Authors' code: bardylab/MPSIIIA_snRNAseq_Synaptic_Paper_2026 (no license)

Status: code verified, 4 files readable, 13 matches

[450] Code ↔ Paper doi:10.18632/aging.206369 [paper, repository]

Association of epigenetic age acceleration with MRI biomarkers of aging and Alzheimer's disease neurodegeneration.

Journal: Aging

Authors' code: danbelsky/DunedinPACE (GPL-3.0)

Status: code verified, 7 files readable

[451] Code ↔ Paper doi:10.1016/j.celrep.2026.117235 [paper, repository]

Integration of aged brain multi-omics reveals cross-system mechanisms underlying Alzheimer's disease heterogeneity.

Journal: Cell reports

Authors' code: Zenodo 18842083 (GPL-2.0), RushAlz/ROSMAP_MOFA_public_release (GPL-2.0), Zenodo 18842084 (GPL-2.0)

Status: code verified, 69 files readable, 12 matches

[452] Code ↔ Paper doi:10.1038/s44400-026-00074-y [paper, repository]

Methylomic signatures of tau and amyloid-beta in transgenic mouse models of Alzheimer's disease neuropathology.

Journal: NPJ dementia

Authors' code: SziKayLeung/AD_mouse_methylation (no license), Zenodo 15741353 (CC-BY-4.0)

Status: code verified, 93 files readable, 16 matches

Monday, 6 April 2026 (2 papers)

[453] doi:10.1186/s13195-026-02030-7 [paper, data]

Moderating role of executive function in the relationship between specific white matter changes and long-term delayed recall in aMCI patients.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[454] Code ↔ Paper doi:10.1002/dad2.70323 [paper, repository]

The primary care brain health navigator: A perspective on implementation.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: aafp.org/pubs/fpm (no license)

Status: code verified

Saturday, 4 April 2026 (2 papers)

[455] Code ↔ Paper doi:10.1186/s40478-026-02287-x [paper, repository]

Cellular signatures of melanocortin pathway genes across the locus coeruleus.

Journal: Acta neuropathologica communications

Authors' code: fmbetul/LC-melanocortin-analysis (MIT)

Status: code verified, 11 files readable, 27 matches

[456] Code ↔ Paper doi:10.1186/s40478-026-02286-y [paper, repository]

AI guided discovery of a murine model of asymptomatic Alzheimer's disease.

Journal: Acta neuropathologica communications

Authors' code: sahoo00/adnet](https: (no license)

Status: dead link

Friday, 3 April 2026 (3 papers)

[457] Code ↔ Paper doi:10.1371/journal.pcbi.1014022 [paper, repository]

Emergence of multifrequency activity in a laminar neural mass model.

Journal: PLoS computational biology

Authors' code: dsb-lab/LaNMM (CC0-1.0)

Status: code verified, 6 files readable

[458] Code ↔ Paper doi:10.1038/s43587-026-01096-0 [paper, repository]

Neuronal APOE4-induced early hippocampal network hyperexcitability in Alzheimer's disease pathogenesis.

Journal: Nature aging

Authors' code: dtabuena/TabuenaJangGrone (no license)

Status: code verified, 1 file readable

[459] doi:10.1016/j.jnha.2026.100836 [paper, data]

Accelerated biological aging and brain structural alterations linking air pollution to dementia risk: a prospective cohort study.

Journal: The journal of nutrition, health & aging

Status: data only, 1 dataset cited

Thursday, 2 April 2026 (4 papers)

[460] doi:10.1016/j.bpj.2026.03.061 [paper]

Clustering hinders APP α-secretase processing in the plasma membrane.

Journal: Biophysical journal

Status: code on request

[461] Code ↔ Paper doi:10.1007/s00366-026-02313-5 [paper, repository]

A computational framework to predict the spreading of Alzheimer's disease.

Journal: Engineering with computers

Authors' code: mechmat.web.ox.ac.uk/codes (no license)

Status: code verified

[462] Code ↔ Paper doi:10.3389/fnagi.2026.1771822 [paper, repository]

Neuroanatomical patterns of dementia risk in autism spectrum disorder.

Journal: Frontiers in aging neuroscience

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable, 1 match

[463] doi:10.1002/exp2.70160 [paper, data]

<i>RBFOX1</i> Dysfunction Unlocks <i>APOE4</i>-Associated Microglial Genesis and Exacerbates Alzheimer's Pathology in Human Cerebral Organoids.

Journal: Exploration (Beijing, China)

Status: data only, 1 dataset cited

Wednesday, 1 April 2026 (22 papers)

[464] Code ↔ Paper doi:10.1093/brain/awaf375 [paper, repository]

Reference proteins to improve Core 1 and Core 2 Alzheimer's disease CSF and plasma biomarkers.

Journal: Brain : a journal of neurology

Authors' code: DeMONLab-BioFINDER/karlsson_refprot_normalization (no license)

Status: code verified, 4 files readable, 4 matches

[465] Code ↔ Paper doi:10.1111/ejn.70480 [paper, repository]

Astrocyte Proximity Protects Synapses From Human Amyloid-Beta Induced Degeneration in a Mouse Ex Vivo Model of Early Alzheimer's Disease.

Journal: The European journal of neuroscience

Authors' code: francesco-gobbo/astrocyte-proximity-protects-synapses-in-ad (Apache-2.0)

Status: code verified, 6 files readable, 4 matches

[466] doi:10.1002/brb3.71363 [paper]

Brain Functional Connectivity as a Mediator Between Hematological Metrics and Cognitive Decline in Children With Beta-thalassemia Major.

Journal: Brain and behavior

Status: code on request

[467] Code ↔ Paper doi:10.1038/s42003-026-09923-1 [paper, repository]

Scalable discovery of spatial multicellular patterns via neighborhood-to-sequence transformation.

Journal: Communications biology

Authors' code: zhengli09/BASS-Analysis (no license), zhaofangyuan98/FDPMining (no license), Zenodo 18902032 (CC-BY-4.0)

Status: code verified, 63 files readable, 1 match

[468] doi:10.1096/fj.202504243r [paper, data]

Maternal Choline Supplementation in a Mouse Model of Down Syndrome and Alzheimer's Disease Generates Unique Expression Profile Mosaics Within Three Hippocampal Excitatory Neuronal Populations.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[469] Code ↔ Paper doi:10.1002/alz.71337 [paper, repository]

Tracking tau and cellular responses in human iPSC-microglia: from uptake to seedable secretion, including in extracellular vesicles.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: s-washer/karabova_2025_tracking_tau_and_cellular_responses_in_microglia_rnaseq (MIT)

Status: code verified, 5 files readable, 6 matches

[470] Code ↔ Paper doi:10.1002/alz.71273 [paper, repository]

Proteomic profiling of brain organoids and extracellular vesicles identifies early Alzheimer's disease biomarkers and drug response heterogeneity.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: daiyundong/Machairaki_2025_EV_Organoid_Proteomics (MIT)

Status: code verified, 4 files readable, 4 matches

[471] Code ↔ Paper doi:10.1002/alz.71343 [paper, repository]

Health system patterns of imaging and fluid biomarker testing in the era of anti-amyloid therapies.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: RadGenLab/AmyloidVolume (no license)

Status: dead link

[472] doi:10.1002/cns.70860 [paper, data]

RFWD2 Mitigates AD-Like Cognitive Impairments via the JNK-SGK1 Signaling Pathway in Mice.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[473] Code ↔ Paper doi:10.1002/hbm.70508 [paper, repository]

Cyclic 2.5D Perceptual Loss for Cross-Modal 3D Medical Image Synthesis: T1w MRI to Tau PET.

Journal: Human brain mapping

Authors' code: labhai/Cyclic-2.5D-Perceptual-Loss (no license)

Status: code verified, 6 files readable, 3 matches

[474] Code ↔ Paper doi:10.1002/alz.71365 [paper, repository]

Benchmarking speech biomarkers of Alzheimer's against cognitive and neural measures.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: OSF ad8jb (no license)

Status: code verified, 4 files readable, 1 match

[475] Code ↔ Paper doi:10.1093/bioinformatics/btag153 [paper, repository]

MAISNet: a multi-species integrated graph neural network for acetylcholinesterase inhibitor screening.

Journal: Bioinformatics (Oxford, England)

Authors' code: liangshengjie111/MAISNet (no license)

Status: code verified, 32 files readable, 4 matches

[476] Code ↔ Paper doi:10.1002/alz.71271 [paper, repository]

Intracellular protein GBF1 displays significant associations with amyloid pathology in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: chapmanb/bcbio-nextgen (MIT)

Status: code verified, 318 files readable, 1 match

[477] doi:10.1002/alz.71411 [paper, data]

Risk factors underlying brain structure change rate in cognitive decline: Results from genomewide and phenomewide investigations.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[478] Code ↔ Paper doi:10.1002/alz.71366 [paper, repository]

Divergent patterns of cognitive decline in preclinical Alzheimer's disease: Implications for secondary prevention trials.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: atri-biostats/a4learn (no license)

Status: code verified, 9 files readable, 14 matches

[479] doi:10.1002/alz.71232 [paper, data]

Neural embedding of frailty in cognitively unimpaired aging and dementia across Latin America.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[480] doi:10.1002/alz.71378 [paper, data]

Human iPSC-derived GABAergic interneuron transplantation restores circuit balance and cognitive function in an Alzheimer's disease model.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[481] doi:10.1002/alz.71433 [paper, data]

Genetic correlation analysis of Alzheimer's disease and stroke implicates PHLPP1 as a shared locus in individuals of African ancestry.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[482] Code ↔ Paper doi:10.1002/trc2.70257 [paper, repository]

Blood DNA methylation signature of cognitive reserve moderates the association between CSF tau pathology and memory in prodromal Alzheimer's disease.

Journal: Alzheimer's & dementia (New York, N. Y.)

Authors' code: TransBioInfoLab/ad-cr (MIT)

Status: code verified, 42 files readable, 9 matches

[483] Code ↔ Paper doi:10.1002/trc2.70264 [paper, repository]

Single-subject proteomic signatures in Alzheimer's disease reflect clinical phenotypes and distinguish asymptomatic from symptomatic cases.

Journal: Alzheimer's & dementia (New York, N. Y.)

Authors' code: avijitpodder-ap.github.io/ssproteomics-workflow (no license), avijitpodder-AP/ssproteomics-workflow (no license)

Status: code verified, 1 file readable

[484] Code ↔ Paper doi:10.1002/dad2.70360 [paper, repository]

Investigating the amyloid-tau-neurodegeneration framework in Alzheimer's disease using semi-supervised multimodal imaging data fusion.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: ANSR-laboratory/SuperBigFLICA_McL (MIT)

Status: code verified, 5 files readable

[485] Code ↔ Paper doi:10.1002/trc2.70278 [paper, repository]

A combination of ketones and NAD<sup>+</sup> precursor preserves white matter integrity in mild cognitive impairment.

Journal: Alzheimer's & dementia (New York, N. Y.)

Authors' code: scilus/rbx_flow (MIT)

Status: empty repository, 2 files readable

2025 (2 papers)

[486] Code ↔ Paper doi:10.1038/s41467-025-62798-4 [paper, repository]

Distinct manifestations of excitatory-inhibitory imbalance associated with amyloid-β and tau in patients with Alzheimer’s disease

Journal: —

Authors' code: kamalinigr/megabtaufdg (no license)

Status: empty repository, 1 file readable

[487] Code ↔ Paper doi:10.1007/s00429-025-03012-5 [paper, repository]

The neurophysiology of healthy and pathological aging: a comprehensive systematic review

Journal: —

Authors' code: gemmaferu/systematic-review-neurophysiology-aging (no license)

Status: code verified, 2 files readable, 1 match