OSCR

Maternal Inflammation Alters Nuclear and Mitochondrial DNA Methylation Patterns in Neonatal Brain Monocytes.

Overview

Authors: Andrew T Ebenezer1, Jonathan R Hicks2, Brooke Hollander1,3, Alexander Hone1,3, Mona Batish4,5, Robert Akins2,5, Adam Marsh5,6, Elizabeth Wright-Jin1,2,3,7
  1. Division of Neurology, Nemours Children’s Hospital, Wilmington, DE 19803, USA; (A.T.E.); (B.H.); (A.H.)
  2. Division of Biomedical Research, Nemours Children’s Health, Wilmington, DE 19803, USA; (J.R.H.); (R.A.)
  3. Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA 19107, USA
  4. Medical and Molecular Sciences, University of Delaware, Newark, DE 19707, USA
  5. Delaware Data Science Institute, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19716, USA
  6. School of Marine Science and Policy, University of Delaware, Newark, DE 19107, USA
  7. Psychological and Brain Sciences, University of Delaware, Newark, DE 19107, USA
Institutions: Nemours Children's Health System (United States); Thomas Jefferson University (United States); University of Delaware (United States)
Journal: Cells, volume 15, issue 8, article 714
Dates: received 3 March 2026; accepted 16 April 2026; published online 18 April 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.3390/cells15080714 · PMID 42041581 · PMCID PMC13115308 · OpenAlex W7154963824
Open access: gold, a free copy (OpenAlex)
Status: data only
Categories: genetics / omics (modality), human (organism), mouse (organism), other condition (population)
Methods: Statistics, Smoothing, state filtering, decompositions
Keywords: hypoxic ischemic encephalopathy, maternal immune activation, DNA methylation, epigenetics, neurodevelopment
MeSH: Brain*, Cell Nucleus*, DNA Methylation*, DNA, Mitochondrial*, Inflammation*, Monocytes*, Animals, Animals, Newborn, CpG Islands, Epigenesis, Genetic, Female, Humans, Hypoxia-Ischemia, Brain, Mice, Pregnancy (* major topic)
Topic: Neonatal and fetal brain pathology (Pediatrics, Perinatology and Child Health, Medicine), according to OpenAlex
Funding: NIGMS NIH HHS (3P20GM103446-23S8)
Citations: not cited yet (Europe PMC); 76 references in the paper

Abstract

Highlights: What are the main findings?

Widespread DNA methylation changes occur in brain monocytes of newborn mice after exposure to maternal immune activation in utero.

Mitochondrial DNA is hypermethylated in offspring’s brain monocytes after exposure to maternal immune activation in utero.

Nuclear genes are predominantly hypermethylated after maternal immune activation, and gene ontology analysis reveals these genes are important for neurodevelopment, immune response, and structural development.

What are the implications of the main findings?

Altered methylation of nuclear and mitochondrial DNA in brain monocytes may increase neurodevelopmental risk in offspring after maternal immune activation in utero.

Abstract: Neonatal hypoxic ischemic encephalopathy (HIE) is a common birth complication that can cause death or lifelong disabling conditions like cerebral palsy, epilepsy, and autism. It is well established that maternal infection and inflammation are significant risk factors for HIE but reasons for this increase in neurological risk to the offspring remain unknown. Inflammation or infection are associated with epigenetic changes and may contribute to the increased risk of neurodevelopmental disability in exposed offspring. Here, we analyzed and compared DNA methylation patterns in brain monocytes isolated from control, maternal immune activation (MIA), and an inflammation sensitized HIE (IS-HIE) CF-1 mouse model at postnatal day 7. We found that maternal inflammation induced significant methylation differences in neonates relative to control samples in both MIA and IS-HIE samples with no significant differences identified between the MIA and IS-HIE groups. MIA samples showed hypermethylation at loci involving craniofacial development and transcription factors important for regulating neurodevelopment and immune function. MIA samples also demonstrated significant hypermethylation at multiple mitochondrial genome CpGs. These findings suggest that maternal inflammation induces epigenetic alterations in fetal brain immune cells that are detectable in neonates. These changes may contribute to heightened neurodevelopmental risk in offspring following hypoxic injury, highlighting potential molecular pathways for future therapeutic targeting.

Reproduced under the paper's license (CC BY), from the paper cited above.

Code

The paper links to its data, not to its authors' code: see the Data section.

Tracing map

A tracing map links a paper to the code its authors published: this paper has none, so it has no map.

Data

Datasets cited

Data Availability Statement

The data presented in this study are openly available in [NCBI GEO accession number GSE319589 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319589)].

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 29 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 8 authors, 5 keywords, 15 MeSH terms, 1 funder, 68 references.

Cite

This paper

Ebenezer, A. T., Hicks, J. R., Hollander, B., Hone, A., Batish, M., Akins, R., Marsh, A., & Wright-Jin, E. (2026). Maternal Inflammation Alters Nuclear and Mitochondrial DNA Methylation Patterns in Neonatal Brain Monocytes. Cells, 15(8), 714. https://doi.org/10.3390/cells15080714

BibTeX

@article{ebenezer2026maternal,
author = {Ebenezer, Andrew T and Hicks, Jonathan R and Hollander, Brooke and Hone, Alexander and Batish, Mona and Akins, Robert and Marsh, Adam and Wright-Jin, Elizabeth},
title = {{Maternal Inflammation Alters Nuclear and Mitochondrial DNA Methylation Patterns in Neonatal Brain Monocytes}},
journal = {Cells},
year = {2026},
month = apr,
volume = {15},
number = {8},
pages = {714},
publisher = {Multidisciplinary Digital Publishing Institute (MDPI)},
issn = {2073-4409},
doi = {10.3390/cells15080714},
url = {https://doi.org/10.3390/cells15080714},
pmid = {42041581},
pmcid = {PMC13115308}
}

RIS

TY - JOUR
AU - Ebenezer, Andrew T
AU - Hicks, Jonathan R
AU - Hollander, Brooke
AU - Hone, Alexander
AU - Batish, Mona
AU - Akins, Robert
AU - Marsh, Adam
AU - Wright-Jin, Elizabeth
TI - Maternal Inflammation Alters Nuclear and Mitochondrial DNA Methylation Patterns in Neonatal Brain Monocytes
T2 - Cells
J2 - Cells
PY - 2026
DA - 2026/04/18
VL - 15
IS - 8
SP - 714
SN - 2073-4409
PB - Multidisciplinary Digital Publishing Institute (MDPI)
DO - 10.3390/cells15080714
UR - https://doi.org/10.3390/cells15080714
LA - en
ER -

CSL-JSON

{
"id": "10.3390/cells15080714",
"type": "article-journal",
"title": "Maternal Inflammation Alters Nuclear and Mitochondrial DNA Methylation Patterns in Neonatal Brain Monocytes",
"container-title": "Cells",
"author": [
{
"family": "Ebenezer",
"given": "Andrew T"
},
{
"family": "Hicks",
"given": "Jonathan R"
},
{
"family": "Hollander",
"given": "Brooke"
},
{
"family": "Hone",
"given": "Alexander"
},
{
"family": "Batish",
"given": "Mona"
},
{
"family": "Akins",
"given": "Robert"
},
{
"family": "Marsh",
"given": "Adam"
},
{
"family": "Wright-Jin",
"given": "Elizabeth"
}
],
"container-title-short": "Cells",
"volume": "15",
"issue": "8",
"page": "714",
"DOI": "10.3390/cells15080714",
"PMID": "42041581",
"PMCID": "PMC13115308",
"ISSN": "2073-4409",
"publisher": "Multidisciplinary Digital Publishing Institute (MDPI)",
"URL": "https://doi.org/10.3390/cells15080714",
"language": "en",
"issued": {
"date-parts": [
[
2026,
4,
18
]
]
}
}

Similar papers

The papers with a page that share the most with this one: the tools found in their code, their categories, datasets, cited references and authors, the rarest counting most.

[1] doi:10.1186/s13073-026-01650-w [code]
DNA methylation biomarkers-based pan-cancer classifier: predictive modeling for cancer classification.
Journal: Genome medicine
In common: genetics / omics, other condition, 3 references
[2] doi:10.3389/fimmu.2026.1775662
<i>Blomia tropicalis</i> allergens induce lung DNA methylation changes in neuroimmune genes in a mouse model of airway inflammation.
Journal: Frontiers in immunology
In common: genetics / omics, mouse, 2 references
[3] doi:10.1038/s41598-026-45990-4 [code]
Multi-platform profiling reveals host- and cell -type-specific pseudorabies virus gene expression.
Journal: Scientific reports
In common: genetics / omics, other condition, 2 references
[4] doi:10.1038/s41586-026-10679-1 [code]
Cortical development dynamics across autism spectrum disorder mouse models.
Journal: Nature
In common: genetics / omics, mouse, 2 references
[5] doi:10.1038/s41467-026-76587-0 [code]
Uncovering the signaling networks of disseminated glioblastoma cells in vivo with INSIGHT.
Journal: Nature communications
In common: genetics / omics, other condition, mouse, 2 references
[6] doi:10.3389/fncel.2026.1901103
Loss of epigenetic adaptation to a high-fat diet in alpha-synuclein transgenic mice.
Journal: Frontiers in cellular neuroscience
In common: genetics / omics, mouse, 2 references
[7] doi:10.1016/j.cell.2026.05.026 [code]
The critical role of the endogenous immune compartment after CAR T cell therapy in recurrent GBM.
Journal: Cell
In common: genetics / omics, other condition, 2 references
[8] doi:10.1186/s13059-026-04084-0
Histone H1 variants regulate neurodevelopmental transcriptional programs in autism with 16p11.2 deletion.
Journal: Genome biology
In common: genetics / omics, other condition, 2 references
[9] doi:10.1093/bib/bbag339 [code]
scDeepAPA: a deep learning framework for single-cell alternative polyadenylation identification.
Journal: Briefings in bioinformatics
In common: genetics / omics, other condition, mouse, 1 reference
[10] doi:10.3389/fbinf.2026.1808516
Integrative multi-cohort analysis of DNA methylation profiles for pancreatic ductal adenocarcinoma biomarker discovery and prognosis.
Journal: Frontiers in bioinformatics
In common: genetics / omics, 2 references

Contribute

The authors of this paper can claim it, correct its record and validate its tracing map, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to OSCR's own machine, which answers it; your account page follows them.

Sign in with ORCID to claim this paper as one of its authors, correct its record or validate its tracing map: when the paper's metadata lists your ORCID iD, you are recognized at once. Maintainers of its code: sign in with GitHub, then claim the repository on your account page.

Request its removal

To ask OSCR to remove this record, the copies of its authors' scripts or its tracing map, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).

Discussion, reproductions, activity

Discussion: questions and error reports about this paper and its code, from signed-in readers and its authors. It opens with sign-in.

Reproductions: reports from readers who ran the authors' code: what they reproduced, with which environment, commit and data. It opens with sign-in.

Activity: what happens around this paper: new versions of its record, its map's validation, discussions and reproductions. It opens with sign-in.