OSCR

The NeuroML ecosystem for standardized multi-scale modeling in neuroscience.

This page is built on request from the registry's record of the paper. The 6,000 most recent papers have a fuller page, built ahead of time, with the Code ↔ Paper reader, the tracing map and its validation, the record's versions, how to cite it and similar papers. This paper is older: its record, its code, its data and the requests about it are below.

Code

3,697 files of its code read; 11 matches between paragraphs and code. The Code ↔ Paper reader is built for the 6,000 most recent papers only: this paper's code is read at its source.

jupyter.org

License: none: the authors keep all their rights
State: the link answers

OpenSourceBrain/AllenInstituteNeuroML

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/Brunel2000

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/L5bPyrCellHayEtAl2011

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/IzhikevichModel

License: BSD-3-Clause
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/BlueBrainProjectShowcase

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/PospischilEtAl2008

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/PotjansDiesmann2014

License: GPL-3.0
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/M1NetworkModel

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/SadehEtAl2017-InhibitionStabilizedNetworks

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/SmithEtAl2013-L23DendriticSpikes

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/Thalamocortical

License: GPL-2.0
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/BahlEtAl2012_ReducedL5PyrCell

License: none: the authors keep all their rights
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/del-Molino2017

License: none: the authors keep all their rights
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/MejiasEtAl2016

License: none: the authors keep all their rights
State: the link answers
Copies: kept by the registry: this license allows it

SilverLabUCL/MF-GC-network-backprop-public

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/SolinasEtAl-GolgiCell

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/VervaekeEtAl-GolgiCellNetwork

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

mbezaire/ca1

License: none: the authors keep all their rights
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/WangBuzsaki1996

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/MiglioreEtAl14_OlfactoryBulb3D

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

openworm/hodgkin_huxley_tutorial

License: LGPL-3.0
State: the link answers
Copies: kept by the registry: this license allows it

openworm/muscle_model

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

openworm/c302

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

opensourcebrain/hindmarshrose1984

License: none: the authors keep all their rights
State: the link answers
Copies: kept by the registry: this license allows it

OpenSourceBrain/ArborShowcase

License: none: the authors keep all their rights
State: the link answers
Copies: kept by the registry: this license allows it

NeuroML/Cvapp-NeuroMorpho.org

License: none: the authors keep all their rights
State: the link answers
Copies: kept by the registry: this license allows it

neuroml/neuroml2

License: LGPL-3.0
State: the link answers
Copies: kept by the registry: this license allows it

NeuroML

License: none: the authors keep all their rights
State: the link answers

LEMS

License: none: the authors keep all their rights
State: the link answers

Zenodo 2535506

License: other-open
State: the link answers
Copies: kept by the registry: this license allows it

Zenodo 6417333

License: CC-BY-4.0
State: the link answers

Zenodo 13350473

License: CC-BY-4.0
State: the link answers
Copies: kept by the registry: this license allows it

Zenodo 13342731

License: CC-BY-4.0
State: the link answers
Copies: kept by the registry: this license allows it

Zenodo 8364786

License: other-open
State: the link answers
Copies: kept by the registry: this license allows it

Zenodo 10783062

License: CC-BY-4.0
State: the link answers
Copies: kept by the registry: this license allows it

neuroml/pyneuroml

License: LGPL-3.0
State: the link answers
Copies: kept by the registry: this license allows it

lems/jlems

License: MIT
State: the link answers
Copies: kept by the registry: this license allows it

Overview

Authors: Ankur Sinha, Padraig Gleeson, Bóris Marin, Salvador Dura-Bernal, Sotirios Panagiotou, Sharon Crook, Matteo Cantarelli, Robert C Cannon, Andrew P Davison, Harsha Gurnani, Robin Angus Silver
Journal: eLife
Published: 10 January 2025
Type: Research article
Status: code verified (how the code is found and verified)
License: CC BY

Data

No dataset cited, and no data link found.

Contribute

The authors of this paper can claim it and correct its record, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to the registry's own machine, which answers it; your account page follows them.

Sign in with ORCID to claim this paper as one of its authors or correct its record: when the paper's metadata lists your ORCID iD, you are recognized at once. Maintainers of its code: sign in with GitHub, then claim the repository on your account page.

Add the badge to the code's README

OSCR: the badge of this paper

Authors and maintainers of this paper's code: the badge says what OSCR knows of the paper and links the code to this page. Paste one of these under the README's title. Keep the two marks around it: they let the badge be replaced in place, never added twice. Nothing is changed for you.

Markdown
<!-- oscr-badge:start -->
[![OSCR](https://openscicode.org/badge/doi/10.7554/elife.95135.svg)](https://openscicode.org/badge/doi/10.7554/elife.95135)
<!-- oscr-badge:end -->
reStructuredText
.. oscr-badge:start

.. image:: https://openscicode.org/badge/doi/10.7554/elife.95135.svg
   :target: https://openscicode.org/badge/doi/10.7554/elife.95135
   :alt: OSCR

.. oscr-badge:end
HTML
<!-- oscr-badge:start -->
<a href="https://openscicode.org/badge/doi/10.7554/elife.95135"><img src="https://openscicode.org/badge/doi/10.7554/elife.95135.svg" alt="OSCR"></a>
<!-- oscr-badge:end -->

On GitHub, open the README, choose Edit (the pencil), paste the snippet under the title, then "Commit changes".

Or let it be kept for you, once you choose it: oscr badge --write from the command line, or the GitHub Action in your repository's workflows. Every other form is on the badge page.

Request its removal

To ask for this record, the copies of its authors' scripts or its tracing map to be removed, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).