Every paper, by date: page 153

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 153 of 200: 23 August 2023 to 11 August 2023.

Wednesday, 23 August 2023 (23 papers, 13 on this page)

[34049] doi:10.1098/rsos.230118 [paper, repository]

Early urinary candidate biomarkers and clinical outcomes of intervention in a rat model of experimental autoimmune encephalomyelitis.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6781091 (no license)

Status: code found, still to be checked

[34050] doi:10.1111/acel.13911 [paper]

Accelerated aging in mice with astrocytic redox imbalance as a consequence of SOD2 deletion.

Journal: Aging cell

Status: code on request

[34051] doi:10.1126/sciadv.adg3038 [paper, data]

Reduced thalamic excitation to motor cortical pyramidal tract neurons in parkinsonism.

Journal: Science advances

Status: data only, 1 dataset cited

[34052] doi:10.1126/sciadv.adh2501 [paper, data]

An engineered Sox17 induces somatic to neural stem cell fate transitions independently from pluripotency reprogramming.

Journal: Science advances

Status: data only, 1 dataset cited

[34053] doi:10.1152/jn.00160.2023 [paper, repository]

Simulations predict differing phase responses to excitation vs. inhibition in theta-resonant pyramidal neurons.

Journal: Journal of neurophysiology

Authors' code: suny-downstate-medical-center/nonlinear_impedance_phase (no license)

Status: code verified, 141 files readable, 9 matches

[34054] doi:10.1186/s12915-023-01682-3 [paper, data]

Gene losses, parallel evolution and heightened expression confer adaptations to dedicated cleaning behaviour.

Journal: BMC biology

Status: data only, 2 datasets cited

[34055] doi:10.1523/eneuro.0147-23.2023 [paper, repository]

Single-Nucleus Profiling Identifies Accelerated Oligodendrocyte Precursor Cell Senescence in a Mouse Model of Down Syndrome.

Journal: eNeuro

Authors' code: KalishLab/Ts65Dn_OPC_Senescence (no license)

Status: empty repository, 1 file readable

[34056] doi:10.15252/embj.2022112507 [paper, repository]

Queuosine-tRNA promotes sex-dependent learning and memory formation by maintaining codon-biased translation elongation speed.

Journal: The EMBO journal

Authors' code: broadinstitute/protigy (BSD-3-Clause)

Status: code verified, 14 files readable, 1 match

[34057] doi:10.3389/fnins.2023.1211079 [paper, data]

Publicly available <i>ex vivo</i> transcriptomics datasets to explore CNS physiology and neurodegeneration: state of the art and perspectives.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[34058] doi:10.3390/biomedicines11092360 [paper, repository]

Distinct Cerebrospinal Fluid Lipid Signature in Patients with Subarachnoid Hemorrhage-Induced Hydrocephalus.

Journal: Biomedicines

Authors' code: Sorennorge/MacAulayLab-SAH-Metabolomics (no license)

Status: code verified, 27 files readable, 2 matches

[34059] doi:10.3390/brainsci13091231 [paper, data]

Age of Bilingual Onset Shapes the Dynamics of Functional Connectivity and Laterality in the Resting-State.

Journal: Brain sciences

Status: data only, 1 dataset cited

[34060] doi:10.7554/elife.82566 [paper, repository]

Statistical inference on representational geometries.

Journal: eLife

Authors' code: rsagroup/rsatoolbox (MIT), adkipnis/fmri-simulations (no license)

Status: code verified, 239 files readable, 24 matches

[34061] doi:10.7554/elife.84296 [paper, repository]

Using adversarial networks to extend brain computer interface decoding accuracy over time.

Journal: eLife

Authors' code: limblab/adversarial_BCI (no license), limblab/XDS (no license), xuanma/decoder_standard (no license), Zenodo 8247497 (MIT), Zenodo 8247498 (MIT)

Status: code verified, 60 files readable, 15 matches

Tuesday, 22 August 2023 (22 papers)

[34062] doi:10.1002/hbm.26451 [paper, repository]

Indirect evidence for altered dopaminergic neurotransmission in very premature-born adults.

Journal: Human brain mapping

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable, 3 matches

[34063] doi:10.1002/hbm.26453 [paper, repository]

Robust hierarchically organized whole-brain patterns of dysconnectivity in schizophrenia spectrum disorders observed after personalized intrinsic network topography.

Journal: Human brain mapping

Authors' code: TIGRLab/SSD_PINT (MIT)

Status: code verified, 74 files readable, 12 matches

[34064] doi:10.1002/hbm.26458 [paper, data]

Spatial distribution of hand-grasp motor task activity in spinal cord functional magnetic resonance imaging.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[34065] doi:10.1002/hbm.26460 [paper]

MR-based spatiotemporal anisotropic atrophy evaluation of hippocampus in Alzheimer's disease progression by multiscale skeletal representation.

Journal: Human brain mapping

Status: code on request

[34066] doi:10.1002/hbm.26468 [paper, repository]

Healthcare experience affects pain-specific responses to others' suffering in the anterior insula.

Journal: Human brain mapping

Authors' code: canlab/neuroimaging_pattern_masks (GPL-3.0)

Status: code verified, 344 files readable, 3 matches

[34067] doi:10.1007/s12015-023-10600-7 [paper, data]

Dbx2, an Aging-Related Homeobox Gene, Inhibits the Proliferation of Adult Neural Progenitors.

Journal: Stem cell reviews and reports

Status: data only, 1 dataset cited

[34068] doi:10.1007/s12311-023-01596-4 [paper, repository]

A Functional Atlas of the Cerebellum Based on NeuroSynth Task Coordinates.

Journal: Cerebellum (London, England)

Authors' code: SocialCerebellum/Parcellation (no license)

Status: code verified, 11 files readable, 1 match

[34069] doi:10.1016/j.celrep.2023.112994 [paper, data]

Cell-type-specific regulation of APOE and CLU levels in human neurons by the Alzheimer's disease risk gene SORL1.

Journal: Cell reports

Status: data only, 1 dataset cited

[34070] doi:10.1021/acs.jproteome.3c00366 [paper, repository]

Deciphering Protein Secretion from the Brain to Cerebrospinal Fluid for Biomarker Discovery.

Journal: Journal of proteome research

Authors' code: kathiwaury/brain-csf-proteomics (MIT)

Status: code verified, 36 files readable, 11 matches

[34071] doi:10.1038/s41439-023-00251-y [paper, data]

Leigh-like syndrome with progressive cerebellar atrophy caused by novel HIBCH variants.

Journal: Human genome variation

Status: data only, 2 datasets cited

[34072] doi:10.1038/s41467-023-40725-9 [paper]

Super-resolution multicolor fluorescence microscopy enabled by an apochromatic super-oscillatory lens with extended depth-of-focus.

Journal: Nature communications

Status: code on request

[34073] doi:10.1038/s41467-023-40800-1 [paper, repository]

Structural insights into opposing actions of neurosteroids on GABA_A receptors.

Journal: Nature communications

Authors' code: Zenodo 7770004 (CC-BY-4.0)

Status: code verified

[34074] doi:10.1038/s41597-023-02454-y [paper, repository]

A magnetoencephalography dataset during three-dimensional reaching movements for brain-computer interfaces.

Journal: Scientific data

Authors' code: honggi82/FTF-analysis (MIT), honggi82/Scientific_Data_2023 (MIT)

Status: code verified, 13 files readable, 4 matches

[34075] doi:10.1038/s41597-023-02457-9 [paper, repository]

A large public dataset of annotated clinical MRIs and metadata of patients with acute stroke.

Journal: Scientific data

Authors' code: Zenodo 5579390 (GPL-3.0), chin-fu-liu/acute-stroke_detection_segmentation (GPL-3.0)

Status: code verified, 4 files readable, 2 matches

[34076] doi:10.1038/s41598-023-40973-1 [paper, repository]

A simplified mesoscale 3D model for characterizing fibrinolysis under flow conditions.

Journal: Scientific reports

Authors' code: remy.pet/insist-2020 (no license), remy.pet/thrombolysis2d (no license)

Status: code verified, 7 files readable, 2 matches

[34077] doi:10.1073/pnas.2306479120 [paper, repository]

PI3K block restores age-dependent neurovascular coupling defects associated with cerebral small vessel disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: datadryad.org/stash/share/bec-2anqtxaa6x6z_ju_dejsp-9zydeevshxmvzkt3w (no license)

Status: code verified

[34078] doi:10.1155/2023/8594273 [paper, repository]

Individual-Level Prediction of Exposure Therapy Outcome Using Structural and Functional MRI Data in Spider Phobia: A Machine-Learning Study.

Journal: Depression and anxiety

Authors' code: avchavanne/SpiderPhobia_Treatment_response_prediction_multimodal (no license)

Status: code verified, 10 files readable, 10 matches

[34079] doi:10.1186/s11689-023-09492-y [paper, repository]

Aberrant oscillatory activity in neurofibromatosis type 1: an EEG study of resting state and working memory.

Journal: Journal of neurodevelopmental disorders

Authors' code: jason-taylor (no license)

Status: code verified

[34080] doi:10.1371/journal.pone.0273269 [paper, repository]

Bright light therapy and early morning attention, mathematical performance, electroencephalography and brain connectivity in adolescents with morning sleepiness.

Journal: PloS one

Authors' code: supp:PMC10443881/pone.0273269.s010.Rmd (no license)

Status: code verified, 1 file readable, 3 matches

[34081] doi:10.3389/fnhum.2023.1216758 [paper, data]

CutFEM forward modeling for EEG source analysis.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[34082] doi:10.3389/fped.2023.1237572 [paper]

Atypical teratoid/rhabdoid tumour with CDK6 amplification in a child: a case report and literature review.

Journal: Frontiers in pediatrics

Status: data only

[34083] doi:10.7554/elife.86512 [paper, data]

Functional imaging of conduction dynamics in cortical and spinal axons.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 21 August 2023 (23 papers)

[34084] doi:10.1002/acn3.51869 [paper, repository]

A trichotomy method for defining homogeneous subgroups in a dementia population.

Journal: Annals of clinical and translational neurology

Authors' code: markvcid.partners.org/consortium-protocols-resources (no license)

Status: code verified

[34085] doi:10.1038/s41398-023-02567-3 [paper, repository]

Brain mediators of negative affect-induced physical symptom reporting in patients with functional somatic syndromes.

Journal: Translational psychiatry

Authors' code: canlab/MediationToolbox (no license), labgas/proj-emosymp (GPL-3.0)

Status: code verified, 231 files readable, 4 matches

[34086] doi:10.1038/s41467-023-40332-8 [paper, repository]

Erythropoietin re-wires cognition-associated transcriptional networks.

Journal: Nature communications

Authors' code: Manu-1512/Erythropoetin-says-Dracarys (no license), Zenodo 8071161 (CC-BY-4.0)

Status: code verified, 3 files readable

[34087] doi:10.1038/s41467-023-40517-1 [paper, repository]

Linking emotional valence and anxiety in a mouse insula-amygdala circuit.

Journal: Nature communications

Authors' code: deisseroth-lab/multifiber (no license), beyelerlab/FiberPhotometry_anxiety (no license)

Status: code verified, 134 files readable, 4 matches

[34088] doi:10.1038/s41467-023-40651-w [paper, repository]

Sequence anticipation and spike-timing-dependent plasticity emerge from a predictive learning rule.

Journal: Nature communications

Authors' code: matteosaponati/predictive_neuron (no license)

Status: code verified, 45 files readable, 6 matches

[34089] doi:10.1038/s41467-023-40917-3 [paper, repository]

At-home wearables and machine learning sensitively capture disease progression in amyotrophic lateral sclerosis.

Journal: Nature communications

Authors' code: neuropheno-org/Pairwise_model_code (MIT)

Status: code verified, 4 files readable, 2 matches

[34090] doi:10.1038/s41593-023-01410-8 [paper, repository]

A stable and replicable neural signature of lifespan adversity in the adult brain.

Journal: Nature neuroscience

Authors' code: amarquand/PCNtoolkit (GPL-3.0)

Status: code verified, 126 files readable, 3 matches

[34091] doi:10.1038/s41597-023-02377-8 [paper, repository]

A longitudinal resource for population neuroscience of school-age children and adolescents in China.

Journal: Scientific data

Authors' code: zuoxinian/ccs (GPL-2.0)

Status: code verified, 732 files readable, 5 matches

[34092] doi:10.1038/s41746-023-00895-8 [paper, repository]

Mining the contribution of intensive care clinical course to outcome after traumatic brain injury.

Journal: NPJ digital medicine

Authors' code: sbhattacharyay/dynamic_GOSE_model (MIT), Zenodo 7668551 (other-open)

Status: code verified, 94 files readable, 4 matches

[34093] doi:10.1073/pnas.2304323120 [paper]

Intersectin deficiency impairs cortico-striatal neurotransmission and causes obsessive-compulsive behaviors in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[34094] doi:10.1073/pnas.2308951120 [paper, repository]

Intersubject similarity in neural representations underlies shared episodic memory content.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Cynthia1229/Individualized-memory (no license)

Status: code verified, 4 files readable

[34095] doi:10.1101/2023.08.19.553985 [paper, data]

Local activation of CA1 pyramidal cells induces theta phase precession

Journal: bioRxiv (preprint)

Status: data only, 3 datasets cited

[34096] doi:10.1101/2023.08.20.554009 [paper, repository]

Social complexity affects cognitive abilities but not brain structure in a Poecilid fish

Journal: bioRxiv (preprint)

Authors' code: Zenodo 10800075 (CC-BY-4.0), Zenodo 10800076 (CC-BY-4.0)

Status: code verified, 2 files readable

[34097] doi:10.1162/imag_a_00009 [paper, repository]

Neural representations of naturalistic person identities while watching a feature film.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF vu23z (no license)

Status: code verified, 6 files readable, 3 matches

[34098] doi:10.1186/s13287-023-03444-y [paper, data]

APOE deficiency impacts neural differentiation and cholesterol biosynthesis in human iPSC-derived cerebral organoids.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[34099] doi:10.1242/dev.201488 [paper, data]

SWI/SNF complexes are required for retinal pigmented epithelium differentiation and for the inhibition of cell proliferation and neural differentiation programs.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[34100] doi:10.1371/journal.pone.0282346 [paper, repository]

Evidence- and data-driven classification of low back pain via artificial intelligence: Protocol of the PREDICT-LBP study.

Journal: PloS one

Authors' code: OSF b4edg (no license)

Status: code verified, 8 files readable, 6 matches

[34101] doi:10.1371/journal.pone.0288000 [paper, repository]

clusterBMA: Bayesian model averaging for clustering.

Journal: PloS one

Authors' code: of2/clusterBMA (no license), of2/cBMA_paper_simulations (no license), of2/EEG_clustering_public (no license)

Status: code verified, 19 files readable, 9 matches

[34102] doi:10.3389/fnetp.2023.1216366 [paper, data]

General anesthesia alters CNS and astrocyte expression of activity-dependent and activity-independent genes.

Journal: Frontiers in network physiology

Status: data only, 1 dataset cited

[34103] doi:10.3389/fphys.2023.1214210 [paper, repository]

Intercellular crosstalk mediated by tunneling nanotubes between central nervous system cells. What we need to advance.

Journal: Frontiers in physiology

Authors' code: utraf-pasteur-institute/CellWalker (GPL-3.0)

Status: code verified, 9 files readable

[34104] doi:10.3390/bioengineering10080988 [paper, repository]

Functional Changes of White Matter Are Related to Human Pain Sensitivity during Sustained Nociception.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: rfmri.org/dpabi (no license)

Status: code verified

[34105] doi:10.3390/jcm12165415 [paper, repository]

Adverse Outcome Following Mild Traumatic Brain Injury Is Associated with Microstructure Alterations at the Gray and White Matter Boundary.

Journal: Journal of clinical medicine

Authors' code: pnlbwh/pnlNipype (other), pnlbwh/dMRIharmonization (other)

Status: code verified, 64 files readable, 3 matches

[34106] doi:10.7717/peerj.15689 [paper, data]

Crown-of-thorns starfish spines secrete defence proteins.

Journal: PeerJ

Status: data only, 1 dataset cited

Saturday, 19 August 2023 (15 papers)

[34107] doi:10.1007/s00018-023-04911-8 [paper]

The COP9 signalosome reduces neuroinflammation and attenuates ischemic neuronal stress in organotypic brain slice culture model.

Journal: Cellular and molecular life sciences : CMLS

Status: code on request

[34108] doi:10.1007/s00406-023-01666-y [paper, repository]

Influence of noninvasive brain stimulation on connectivity and local activation: a combined tDCS and fMRI study.

Journal: European archives of psychiatry and clinical neuroscience

Authors' code: neuroanatomyandconnectivity/pipelines (MIT)

Status: code verified, 98 files readable, 1 match

[34109] doi:10.1007/s10143-023-02114-0 [paper, repository]

Enhancing the prediction for shunt-dependent hydrocephalus after aneurysmal subarachnoid hemorrhage using a machine learning approach.

Journal: Neurosurgical review

Authors' code: prediction2020/explainable-predictive-models (MIT)

Status: code verified, 13 files readable, 3 matches

[34110] doi:10.1007/s11357-023-00871-w [paper, repository]

Insights into ageing rates comparison across tissues from recalibrating cerebellum DNA methylation clock.

Journal: GeroScience

Authors' code: yiluyucheng/dnaMethyAge (no license)

Status: code verified, 12 files readable

[34111] doi:10.1016/j.isci.2023.107682 [paper, data]

Mate copying requires the coincidence detector Rutabaga in the mushroom bodies of <i>Drosophila melanogaster</i>.

Journal: iScience

Status: code on request, 3 datasets cited

[34112] doi:10.1016/j.isci.2023.107690 [paper, repository]

Human iPS cell-derived sensory neurons can be infected by SARS-CoV-2.

Journal: iScience

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[34113] doi:10.1016/j.nbd.2023.106266 [paper]

Evoked responses to single pulse electrical stimulation reveal impaired striatal excitability in a rat model of Parkinson's disease.

Journal: Neurobiology of disease

Status: code on request

[34114] doi:10.1016/j.neo.2023.100921 [paper, repository]

Therapeutic HDAC inhibition in hypermutant diffuse intrinsic pontine glioma.

Journal: Neoplasia (New York, N.Y.)

Authors' code: tgen/phoenix (MIT)

Status: code verified, 17 files readable, 2 matches

[34115] doi:10.1016/j.ymthe.2023.08.013 [paper]

Epithelioid neoplasm of the spinal cord in a child with spinal muscular atrophy treated with onasemnogene abeparvovec.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: code on request

[34116] doi:10.1038/s41467-023-40681-4 [paper, data]

CD98hc is a target for brain delivery of biotherapeutics.

Journal: Nature communications

Status: data only, 16 datasets cited

[34117] doi:10.1038/s41467-023-40776-y [paper, data]

Epigenetic and molecular coordination between HDAC2 and SMAD3-SKI regulates essential brain tumour stem cell characteristics.

Journal: Nature communications

Status: data only, 1 dataset cited

[34118] doi:10.1038/s43856-023-00344-3 [paper, repository]

Noninvasive and reliable automated detection of spreading depolarization in severe traumatic brain injury using scalp EEG.

Journal: Communications medicine

Authors' code: Zenodo 8210380 (other-open), Chamanzar/WAVEFRONT (other)

Status: code verified, 22 files readable, 13 matches

[34119] doi:10.1186/s12974-023-02862-2 [paper]

Influenza A virus infection disrupts oligodendrocyte homeostasis and alters the myelin lipidome in the adult mouse.

Journal: Journal of neuroinflammation

Status: data only

[34120] doi:10.1186/s13063-023-07575-8 [paper]

Effect of postoperative application of esketamine on postoperative depression and postoperative analgesia in patients undergoing pancreatoduodenectomy: a randomized controlled trial protocol.

Journal: Trials

Status: code on request

[34121] doi:10.3390/ijms241612964 [paper, data]

Amyloid Precursor Protein (APP) Regulates Gliogenesis and Neurogenesis of Human Neural Stem Cells by Several Signaling Pathways.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 18 August 2023 (21 papers)

[34122] doi:10.1002/brb3.3217 [paper, repository]

Preliminary findings on long-term effects of fMRI neurofeedback training on functional networks involved in sustained attention.

Journal: Brain and behavior

Authors' code: gustavopamplona/Followup_NF_attention (no license)

Status: code verified

[34123] doi:10.1002/mgg3.2269 [paper, data]

Phenotypic and genetic characteristics of 24 cases of early infantile epileptic encephalopathy in East China, including a rare case of biallelic UGDH mutations.

Journal: Molecular genetics & genomic medicine

Status: data only, 1 dataset cited

[34124] doi:10.1007/s00018-023-04892-8 [paper, repository]

Proteomic investigation of neural stem cell to oligodendrocyte precursor cell differentiation reveals phosphorylation-dependent Dclk1 processing.

Journal: Cellular and molecular life sciences : CMLS

Authors' code: Zenodo 7851932 (other-open), roberthardt/bioid-dclk1 (no license)

Status: code verified, 20 files readable, 5 matches

[34125] doi:10.1007/s00422-023-00970-z [paper, repository]

The Bcm rule allows a spinal cord model to learn rhythmic movements.

Journal: Biological cybernetics

Authors' code: Zenodo 5681218 (other-open), matthiaskohler/bcm-oscillation (no license)

Status: code verified, 30 files readable, 3 matches

[34126] doi:10.1007/s11065-023-09609-z [paper, data]

Gradient Organization of Space, Time, and Numbers in the Brain: A Meta-analysis of Neuroimaging Studies.

Journal: Neuropsychology review

Status: data only, 1 dataset cited

[34127] doi:10.1016/j.isci.2023.107679 [paper]

Similar neural pathways link psychological stress and brain-age in health and multiple sclerosis.

Journal: iScience

Status: code on request

[34128] doi:10.1016/j.jmccpl.2023.100043 [paper, repository]

KairoSight-3.0: A validated optical mapping software to characterize cardiac electrophysiology, excitation-contraction coupling, and alternans.

Journal: Journal of molecular and cellular cardiology plus

Authors' code: kairosight (no license)

Status: code verified

[34129] doi:10.1038/s41598-023-39867-z [paper, repository]

Computational modeling allows unsupervised classification of epileptic brain states across species.

Journal: Scientific reports

Authors' code: cobragroup/epileptic-brain-states (AGPL-3.0)

Status: code verified, 18 files readable, 3 matches

[34130] doi:10.1038/s42003-023-05217-y [paper, data]

Dog brains are sensitive to infant- and dog-directed prosody.

Journal: Communications biology

Status: data only, 1 dataset cited

[34131] doi:10.1111/jcmm.17816 [paper, data]

Oestrogen treatment restores dentate gyrus development in premature newborns by IGF1 regulation.

Journal: Journal of cellular and molecular medicine

Status: data only, 1 dataset cited

[34132] doi:10.1162/imag_a_00008 [paper, repository]

Erotic cue exposure increases neural reward responses without modulating temporal discounting.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 6uz8g (no license)

Status: code verified

[34133] doi:10.1186/s12987-023-00459-8 [paper, repository]

Human brain solute transport quantified by glymphatic MRI-informed biophysics during sleep and sleep deprivation.

Journal: Fluids and barriers of the CNS

Authors' code: Zenodo 8036492 (CC-BY-4.0)

Status: code verified

[34134] doi:10.1186/s40001-023-01255-8 [paper, data]

A predictive model for the risk of sepsis within 30 days of admission in patients with traumatic brain injury in the intensive care unit: a retrospective analysis based on MIMIC-IV database.

Journal: European journal of medical research

Status: data only, 1 dataset cited

[34135] doi:10.1371/journal.pcbi.1011385 [paper, repository]

Enhancing reinforcement learning models by including direct and indirect pathways improves performance on striatal dependent tasks.

Journal: PLoS computational biology

Authors' code: neuroRD/TD2Q (no license), modeldb:2014825 (no license), Zenodo 8183889 (other-open)

Status: code verified, 62 files readable, 12 matches

[34136] doi:10.1371/journal.pone.0289406 [paper, repository]

Brain effective connectome based on fMRI and DTI data: Bayesian causal learning and assessment.

Journal: PloS one

Authors' code: abmbagheri/BGOLEM-and-BFGES (no license)

Status: code verified, 29 files readable, 4 matches

[34137] doi:10.1371/journal.ppat.1011544 [paper, data]

Pathogenesis and outcome of VA1 astrovirus infection in the human brain are defined by disruption of neural functions and imbalanced host immune responses.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

[34138] doi:10.3233/adr-220083 [paper, data]

The Abnormal Alternations of Brain Imaging in Patients with Chronic Obstructive Pulmonary Disease: A Systematic Review.

Journal: Journal of Alzheimer's disease reports

Status: data only, 8 datasets cited

[34139] doi:10.3390/biomedicines11082296 [paper, data]

Sleep Traits Causally Affect the Brain Cortical Structure: A Mendelian Randomization Study.

Journal: Biomedicines

Status: data only, 2 datasets cited

[34140] doi:10.3390/cancers15164172 [paper, data]

Brain Tumor Detection Based on Deep Learning Approaches and Magnetic Resonance Imaging.

Journal: Cancers

Status: data only, 2 datasets cited

[34141] doi:10.3390/ijms241612934 [paper, data]

Single and Combined Effects of Chlorpyrifos and Glyphosate on the Brain of Common Carp: Based on Biochemical and Molecular Perspective.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[34142] doi:10.3390/nu15163631 [paper, repository]

Ileal Dysbiosis Is Associated with Increased Acoustic Startle in the 22q11.2 Microdeletion Mouse Model of Schizophrenia.

Journal: Nutrients

Authors' code: julianneyang/q22 (no license)

Status: code verified, 17 files readable, 6 matches

Thursday, 17 August 2023 (30 papers)

[34143] doi:10.1007/s00422-023-00973-w [paper, repository]

Bio-inspired, task-free continual learning through activity regularization.

Journal: Biological cybernetics

Authors' code: pennfranc/bio-inspired-continual-learning (Apache-2.0), Zenodo 7414720 (other-open)

Status: code verified, 225 files readable, 12 matches

[34144] doi:10.1016/j.celrep.2023.112992 [paper, repository]

Peptidergic and functional delineation of the Edinger-Westphal nucleus.

Journal: Cell reports

Authors' code: KozorovitskiyLaboratory (no license), mousebrain.org (no license)

Status: code verified

[34145] doi:10.1016/j.isci.2023.107653 [paper, repository]

Decision and response monitoring during working memory are sequentially represented in the human insula.

Journal: iScience

Authors' code: ludovicbellier/InsulaWM (no license)

Status: code verified, 20 files readable, 2 matches

[34146] doi:10.1038/s41467-023-40526-0 [paper, repository]

Combinatorial expression of neurexins and LAR-type phosphotyrosine phosphatase receptors instructs assembly of a cerebellar circuit.

Journal: Nature communications

Authors' code: behavioranalysis/Tremor-analysis (no license)

Status: code verified, 4 files readable, 1 match

[34147] doi:10.1038/s41467-023-40677-0 [paper, repository]

The respective activation and silencing of striatal direct and indirect pathway neurons support behavior encoding.

Journal: Nature communications

Authors' code: deKerchove-Lab/Varin_2023_NatComm (GPL-3.0), Zenodo 8158538 (other-open)

Status: code verified, 20 files readable, 7 matches

[34148] doi:10.1038/s41467-023-40743-7 [paper, data]

LINE-1 regulates cortical development by acting as long non-coding RNAs.

Journal: Nature communications

Status: data only, 1 dataset cited

[34149] doi:10.1038/s41588-023-01475-y [paper, repository]

Genetic insights into human cortical organization and development through genome-wide analyses of 2,347 neuroimaging phenotypes.

Journal: Nature genetics

Authors' code: ucam-department-of-psychiatry/UKB (GPL-3.0), ucam-department-of-psychiatry/ABCD (no license)

Status: code verified, 81 files readable, 4 matches

[34150] doi:10.1038/s41593-023-01409-1 [paper]

Orbitofrontal cortex control of striatum leads economic decision-making.

Journal: Nature neuroscience

Status: code on request

[34151] doi:10.1038/s41598-023-39951-4 [paper, repository]

The effects of the NMDAR co-agonist D-serine on the structure and function of optic tectal neurons in the developing visual system.

Journal: Scientific reports

Authors' code: fieryzarzar/morphology_timecourse_analysis (no license), RuthazerLab/XenMap (no license), sites.google.com/site/pierrickcoupe (no license)

Status: code verified, 16 files readable, 6 matches

[34152] doi:10.1073/pnas.2300585120 [paper, repository]

Synaptic and cellular endocannabinoid signaling mechanisms regulate stress-induced plasticity of nucleus accumbens somatostatin neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: tjd2002/tjd-shared-code (no license)

Status: code verified, 118 files readable

[34153] doi:10.1073/pnas.2302676120 [paper, repository]

Interictal epileptiform discharges affect memory in an Alzheimer's disease mouse model.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: buzsakilab/buzcode (GPL-3.0), valegarman (no license)

Status: code verified, 2,000 files readable, 12 matches

[34154] doi:10.1073/pnas.2306950120 [paper, repository]

Orange/far-red hybrid voltage indicators with reduced phototoxicity enable reliable long-term imaging in neurons and cardiomyocytes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: PKUCHEMZouLab/HVI (no license)

Status: code verified, 33 files readable

[34155] doi:10.1083/jcb.202112143 [paper, repository]

Cooperative regulation of C1-domain membrane recruitment polarizes atypical protein kinase C.

Journal: The Journal of cell biology

Authors' code: ACCLAB/DABEST-python (Apache-2.0)

Status: code verified, 85 files readable

[34156] doi:10.1093/texcom/tgad015 [paper, repository]

Different patterns of intrinsic functional connectivity at the default mode and attentional networks predict crystalized and fluid abilities in childhood.

Journal: Cerebral cortex communications

Authors' code: diego1977-code/diego1977-code (no license)

Status: empty repository

[34157] doi:10.1101/2023.08.15.553456 [paper, data]

Decoding reveals the neural representation of perceived and imagined musical sounds

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[34158] doi:10.1186/s12915-023-01679-y [paper, data]

Four-parameter analysis in modified Rotarod test for detecting minor motor deficits in mice.

Journal: BMC biology

Status: data only, 1 dataset cited

[34159] doi:10.1371/journal.pbio.3002229 [paper, repository]

Extensive topographic remapping and functional sharpening in the adult rat visual pathway upon first visual experience.

Journal: PLoS biology

Authors' code: Joana-Carvalho (no license)

Status: code verified

[34160] doi:10.1371/journal.pone.0290146 [paper, data]

Sleep disrupts complex spiking dynamics in the neocortex and hippocampus.

Journal: PloS one

Status: data only, 2 datasets cited

[34161] doi:10.1523/eneuro.0128-23.2023 [paper, data]

The Effect of the Peristimulus α Phase on Visual Perception through Real-Time Phase-Locked Stimulus Presentation.

Journal: eNeuro

Status: data only, 1 dataset cited

[34162] doi:10.3389/fncom.2023.1232925 [paper, repository]

Towards best practice of interpreting deep learning models for EEG-based brain computer interfaces.

Journal: Frontiers in computational neuroscience

Authors' code: cuijiancorbin/towards-best-practice-of-interpreting-deep-learning-models-for-eeg-based-bci (no license)

Status: code verified, 2 files readable, 3 matches

[34163] doi:10.3389/fneur.2023.1124943 [paper, repository]

Association between gestational levels of toxic metals and essential elements and cerebral palsy in children.

Journal: Frontiers in neurology

Authors' code: OSF 5867z (no license)

Status: code verified, 1 file readable

[34164] doi:10.3389/fnhum.2023.1139569 [paper, repository]

Cortical control of posture in fine motor skills: evidence from inter-utterance rest position.

Journal: Frontiers in human neuroscience

Authors' code: ericeasthope/as-in-ecog (MIT)

Status: code verified, 7 files readable, 5 matches

[34165] doi:10.3389/fnins.2023.1220848 [paper, data]

Resting-state networks representation of the global phenomena.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[34166] doi:10.3389/fnins.2023.1237176 [paper, data]

Engineered neurogenesis in naïve adult rat cortex by Ngn2-mediated neuronal reprogramming of resident oligodendrocyte progenitor cells.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[34167] doi:10.3389/fnmol.2023.1232447 [paper, data]

Analysis of matrisome expression patterns in murine and human dorsal root ganglia.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[34168] doi:10.3389/fpubh.2023.1199949 [paper, repository]

Holistic pedestrian safety assessment for average males and females.

Journal: Frontiers in public health

Authors' code: openvt.eu (no license)

Status: code verified

[34169] doi:10.3390/cancers15164147 [paper, data]

Imaging Correlates between Headache and Breast Cancer: An [¹⁸F]FDG PET Study.

Journal: Cancers

Status: data only, 2 datasets cited

[34170] doi:10.7554/elife.80152 [paper, repository]

A stochastic model of hippocampal synaptic plasticity with geometrical readout of enzyme dynamics.

Journal: eLife

Authors' code: rveltz/synapseelife (MIT), rveltz/PiecewiseDeterministicMarkovProcesses.jl (MIT)

Status: code verified, 56 files readable, 10 matches

[34171] doi:10.7554/elife.83974 [paper, repository]

Optogenetic manipulation of Gq- and Gi/o-coupled receptor signaling in neurons and heart muscle cells.

Journal: eLife

Authors' code: supp:PMC10435233/elife-83974-code1.zip (no license), supp:PMC10435233/elife-83974-code2.zip (no license), supp:PMC10435233/elife-83974-code3.zip (no license), supp:PMC10435233/elife-83974-code4.zip (no license)

Status: code verified, 4 files readable

[34172] doi:10.7554/elife.83975 [paper, repository]

Optogenetic manipulation of neuronal and cardiomyocyte functions in zebrafish using microbial rhodopsins and adenylyl cyclases.

Journal: eLife

Authors' code: supp:PMC10435232/elife-83975-code1.zip (no license)

Status: code verified, 1 file readable

Wednesday, 16 August 2023 (27 papers)

[34173] doi:10.1002/brb3.3219 [paper, repository]

Considerations on brain age predictions from repeatedly sampled data across time.

Journal: Brain and behavior

Authors' code: estenhl/pyment-public (CC-BY-NC-4.0), MaxKorbmacher/BBSC_Brain (no license)

Status: code verified, 68 files readable

[34174] doi:10.1016/j.celrep.2023.112976 [paper, repository]

Somatostatin peptide signaling dampens cortical circuits and promotes exploratory behavior.

Journal: Cell reports

Authors' code: doi:10.5061/dryad.mgqnk993f (no license)

Status: code verified

[34175] doi:10.1016/j.celrep.2023.113000 [paper]

Role of Na&lt;sub&gt;V&lt;/sub&gt;1.6-mediated persistent sodium current and bursting-pacemaker properties in breathing rhythm generation.

Journal: Cell reports

Status: code on request

[34176] doi:10.1038/s41380-023-02220-x [paper, repository]

Diverging asymmetry of intrinsic functional organization in autism.

Journal: Molecular psychiatry

Authors' code: wanb-psych/autism_gradient_asymm (no license)

Status: code verified, 12 files readable, 4 matches

[34177] doi:10.1038/s41467-023-39873-9 [paper, repository]

Platelet-derived exerkine CXCL4/platelet factor 4 rejuvenates hippocampal neurogenesis and restores cognitive function in aged mice.

Journal: Nature communications

Authors' code: Walker-Neurogenesis/PF4 (no license)

Status: code verified, 1 file readable, 1 match

[34178] doi:10.1038/s41467-023-40611-4 [paper, repository]

Whole genome deconvolution unveils Alzheimer's resilient epigenetic signature.

Journal: Nature communications

Authors' code: elo-nsrb/Cellformer (GPL-3.0), Zenodo 8175353 (CC-BY-4.0)

Status: code verified, 53 files readable, 6 matches

[34179] doi:10.1038/s41467-023-40682-3 [paper, data]

Astroglial Hmgb1 regulates postnatal astrocyte morphogenesis and cerebrovascular maturation.

Journal: Nature communications

Status: data only, 1 dataset cited

[34180] doi:10.1038/s41586-023-06430-9 [paper, repository]

Xiphoid nucleus of the midline thalamus controls cold-induced food seeking.

Journal: Nature

Authors' code: Zenodo 7869467 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[34181] doi:10.1038/s41586-023-06436-3 [paper, data]

Platelet factors attenuate inflammation and rescue cognition in ageing.

Journal: Nature

Status: data only, 2 datasets cited

[34182] doi:10.1038/s41597-023-02449-9 [paper, data]

Release of cognitive and multimodal MRI data including real-world tasks and hippocampal subfield segmentations.

Journal: Scientific data

Status: data only, 1 dataset cited

[34183] doi:10.1038/s41598-023-39650-0 [paper]

Functional MRI of murine olfactory bulbs at 15.2T reveals characteristic activation patters when stimulated by different odors.

Journal: Scientific reports

Status: code on request

[34184] doi:10.1038/s41598-023-40240-3 [paper, repository]

Identifying cellular markers of focal cortical dysplasia type II with cell-type deconvolution and single-cell signatures.

Journal: Scientific reports

Authors' code: icgalvao/DeconvolutionFCD (no license)

Status: code verified, 20 files readable, 5 matches

[34185] doi:10.1038/s43587-023-00468-0 [paper, repository]

Platelet factors are induced by longevity factor klotho and enhance cognition in young and aging mice.

Journal: Nature aging

Authors' code: DenaDubal/Park_et_al_2023 (no license)

Status: code verified, 2 files readable

[34186] doi:10.1038/s43856-023-00342-5 [paper, repository]

Infant movement classification through pressure distribution analysis.

Journal: Communications medicine

Authors' code: Zenodo 8104097 (CC-BY-4.0)

Status: code verified, 10 files readable, 2 matches

[34187] doi:10.1073/pnas.2211986120 [paper, data]

<i>Ret</i> deficiency decreases neural crest progenitor proliferation and restricts fate potential during enteric nervous system development.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[34188] doi:10.1097/ms9.0000000000001204 [paper, repository]

Association of vitamin D and functional dyspepsia: a case-control study.

Journal: Annals of medicine and surgery (2012)

Authors' code: OSF rnqhf (no license)

Status: empty repository

[34189] doi:10.1126/sciadv.adh0558 [paper, repository]

Cross-species analysis identifies mitochondrial dysregulation as a functional consequence of the schizophrenia-associated 3q29 deletion.

Journal: Science advances

Authors' code: doi:10.5061/dryad.b2rbnzsmm (no license), Zenodo 7977913 (MIT)

Status: code verified, 5 files readable, 11 matches

[34190] doi:10.1126/sciadv.adi5548 [paper, data]

Loss of function of the ALS-associated NEK1 kinase disrupts microtubule homeostasis and nuclear import.

Journal: Science advances

Status: data only, 2 datasets cited

[34191] doi:10.1186/s12967-023-04403-0 [paper, data]

Warburg effect enhanced by AKR1B10 promotes acquired resistance to pemetrexed in lung cancer-derived brain metastasis.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[34192] doi:10.1186/s12974-023-02870-2 [paper, data]

Microglial senescence contributes to female-biased neuroinflammation in the aging mouse hippocampus: implications for Alzheimer's disease.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[34193] doi:10.1186/s13020-023-00813-w [paper, data]

Multi-target regulatory mechanism of Yang Xin Tang - a traditional Chinese medicine against dementia.

Journal: Chinese medicine

Status: data only, 1 dataset cited

[34194] doi:10.3389/fcell.2023.1236243 [paper, repository]

Proteomics and disease network associations evaluation of environmentally relevant Bisphenol A concentrations in a human 3D neural stem cell model.

Journal: Frontiers in cell and developmental biology

Authors' code: superlsd/NetBPAbrain (MIT)

Status: code verified, 6 files readable, 2 matches

[34195] doi:10.3389/fncel.2023.1156802 [paper, repository]

<i>Stat1</i> is an inducible transcriptional repressor of neural stem cells self-renewal program during neuroinflammation.

Journal: Frontiers in cellular neuroscience

Authors' code: martin-villalba-lab/data (no license)

Status: code verified, 33 files readable, 2 matches

[34196] doi:10.3389/fnins.2023.1223950 [paper, repository]

Understanding the effects of cortical gyrification in tACS: insights from experiments and computational models.

Journal: Frontiers in neuroscience

Authors' code: LCCN/Frontiers2023 (no license)

Status: code verified, 14 files readable, 5 matches

[34197] doi:10.3389/fnmol.2023.1232805 [paper]

Systems biology approach discovers comorbidity interaction of Parkinson's disease with psychiatric disorders utilizing brain transcriptome.

Journal: Frontiers in molecular neuroscience

Status: data only

[34198] doi:10.3390/jimaging9080163 [paper, data]

MRI-Based Effective Ensemble Frameworks for Predicting Human Brain Tumor.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[34199] doi:10.7554/elife.80250 [paper, repository]

Adult-born granule cells improve stimulus encoding and discrimination in the dentate gyrus.

Journal: eLife

Authors' code: diegoarri91/iclamp-glm (BSD-3-Clause)

Status: code verified, 49 files readable, 1 match

Tuesday, 15 August 2023 (23 papers)

[34200] doi:10.1016/j.celrep.2023.112932 [paper]

Synaptic zinc potentiates AMPA receptor function in mouse auditory cortex.

Journal: Cell reports

Status: code on request

[34201] doi:10.1016/j.cub.2023.07.042 [paper, data]

Engram stability and maturation during systems consolidation.

Journal: Current biology : CB

Status: code on request, 1 dataset cited

[34202] doi:10.1016/j.xpro.2023.102470 [paper]

Protocol for human brain organoid transplantation into a rat visual cortex to model neural repair.

Journal: STAR protocols

Status: code on request

[34203] doi:10.1021/acs.jmedchem.3c00573 [paper, data]

Imaging Cholinergic Receptors in the Brain by Positron Emission Tomography.

Journal: Journal of medicinal chemistry

Status: data only, 2 datasets cited

[34204] doi:10.1038/s41398-023-02581-5 [paper, repository]

Neural representations of anxiety in adolescents with anorexia nervosa: a multivariate approach.

Journal: Translational psychiatry

Authors' code: bbp-lab/seiger-2023 (no license)

Status: code verified, 6 files readable, 2 matches

[34205] doi:10.1038/s41420-023-01595-8 [paper, data]

NeuroD4 converts glioblastoma cells into neuron-like cells through the SLC7A11-GSH-GPX4 antioxidant axis.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[34206] doi:10.1038/s41467-023-40079-2 [paper, repository]

Association between vmPFC gray matter volume and smoking initiation in adolescents.

Journal: Nature communications

Authors' code: Shitong-Xiang/Smoking (no license)

Status: code verified, 8 files readable, 1 match

[34207] doi:10.1038/s41467-023-40484-7 [paper, data]

A sex-specific thermogenic neurocircuit induced by predator smell recruiting cholecystokinin neurons in the dorsomedial hypothalamus.

Journal: Nature communications

Status: code on request, 1 dataset cited

[34208] doi:10.1038/s41467-023-40499-0 [paper, repository]

Subtle adversarial image manipulations influence both human and machine perception.

Journal: Nature communications

Authors' code: OSF dnmkw (no license)

Status: code verified, 3 files readable

[34209] doi:10.1038/s41467-023-40504-6 [paper, data]

A parabrachial-hypothalamic parallel circuit governs cold defense in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[34210] doi:10.1038/s41467-023-40564-8 [paper, repository]

Deep-learning based detection of vessel occlusions on CT-angiography in patients with suspected acute ischemic stroke.

Journal: Nature communications

Authors' code: MIC-DKFZ/nnDetection (no license)

Status: code verified, 167 files readable, 4 matches

[34211] doi:10.1038/s41467-023-40579-1 [paper, data]

Optical blood-brain-tumor barrier modulation expands therapeutic options for glioblastoma treatment.

Journal: Nature communications

Status: data only, 1 dataset cited

[34212] doi:10.1038/s41598-023-40244-z [paper]

Determining regional brain growth in premature and mature infants in relation to age at MRI using deep neural networks.

Journal: Scientific reports

Status: code on request

[34213] doi:10.1038/s41598-023-40321-3 [paper, repository]

Alteration of functional connectivity despite preserved cerebral oxygenation during acute hypoxia.

Journal: Scientific reports

Authors' code: marl1bakker/Hypoxia (no license)

Status: code verified, 78 files readable, 8 matches

[34214] doi:10.1101/gr.277804.123 [paper, repository]

The predicted RNA-binding protein regulome of axonal mRNAs.

Journal: Genome research

Authors' code: Zenodo 8047412 (CC-BY-4.0), RLuisier/AxonLoc (no license)

Status: code verified, 16 files readable, 21 matches

[34215] doi:10.1371/journal.pbio.3002176 [paper, repository]

Music can be reconstructed from human auditory cortex activity using nonlinear decoding models.

Journal: PLoS biology

Authors' code: ludovicbellier/PF_HFAdecoding (no license)

Status: code verified, 32 files readable, 11 matches

[34216] doi:10.1523/jneurosci.0549-23.2023 [paper, data]

Distinctive Roles of Medial Prefrontal Cortex Subregions in Strategic Conformity to Social Hierarchy.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[34217] doi:10.3389/fncom.2023.1229715 [paper, repository]

Quantitative analysis of the optogenetic excitability of CA1 neurons.

Journal: Frontiers in computational neuroscience

Authors' code: Rschoete/3DOptogeneticStimulationCA1_public (MIT)

Status: code verified, 1,046 files readable, 3 matches

[34218] doi:10.3389/fnins.2023.1212549 [paper, repository]

Self-regulation learning as active inference: dynamic causal modeling of an fMRI neurofeedback task.

Journal: Frontiers in neuroscience

Authors' code: galadriana/selfregulationlearning_DCM_fMRI (no license)

Status: code verified, 12 files readable, 2 matches

[34219] doi:10.3390/brainsci13081204 [paper, data]

Skilled Performers Show Right Parietal Lateralization during Anticipation of Volleyball Attacks.

Journal: Brain sciences

Status: data only, 1 dataset cited

[34220] doi:10.3390/ijms241612825 [paper, data]

The ε-Isozyme of Protein Kinase C (PKCε) Is Impaired in ALS Motor Cortex and Its Pulse Activation by Bryostatin-1 Produces Long Term Survival in Degenerating SOD1-G93A Motor Neuron-like Cells.

Journal: International journal of molecular sciences

Status: data only, 3 datasets cited

[34221] doi:10.3390/microorganisms11082089 [paper, data]

Microbiota in Irritable Bowel Syndrome and Endometriosis: Birds of a Feather Flock Together-A Review.

Journal: Microorganisms

Status: data only, 3 datasets cited

[34222] doi:10.7554/elife.86439 [paper, repository]

Variability of visual field maps in human early extrastriate cortex challenges the canonical model of organization of V2 and V3.

Journal: eLife

Authors' code: felenitaribeiro/VariabilityEarlyVisualCortex (GPL-3.0)

Status: code verified, 28 files readable, 5 matches

Monday, 14 August 2023 (22 papers)

[34223] doi:10.1002/hbm.26452 [paper, repository]

MRAβ: A multimodal MRI-derived amyloid-β biomarker for Alzheimer's disease.

Journal: Human brain mapping

Authors' code: BrainWanderLab/MRAbeta (Apache-2.0)

Status: code verified, 17 files readable

[34224] doi:10.1016/j.isci.2023.107486 [paper]

Ventrolateral periaqueductal gray GABAergic neurons promote arousal of sevoflurane anesthesia through cortico-midbrain circuit.

Journal: iScience

Status: code on request

[34225] doi:10.1038/s41467-023-40331-9 [paper, repository]

Cellular profiling of a recently-evolved social behavior in cichlid fishes.

Journal: Nature communications

Authors' code: streelmanlab/cichlid_sn (no license), Zenodo 8030021 (other-open)

Status: code verified, 10 files readable, 3 matches

[34226] doi:10.1038/s41593-023-01404-6 [paper, repository]

Regional, circuit and network heterogeneity of brain abnormalities in psychiatric disorders.

Journal: Nature neuroscience

Authors' code: amarquand/PCNtoolkit (GPL-3.0), ashlea-segal/crossdisorder_multiscale_gmv_heterogeneity (no license)

Status: code verified, 131 files readable, 2 matches

[34227] doi:10.1038/s41598-023-40086-9 [paper, data]

Mechanical hierarchy in the formation and modulation of cortical folding patterns.

Journal: Scientific reports

Status: data only, 1 dataset cited

[34228] doi:10.1038/s41598-023-40097-6 [paper, data]

Asymmetric charge balanced waveforms direct retinal ganglion cell axon growth.

Journal: Scientific reports

Status: data only, 1 dataset cited

[34229] doi:10.1038/s42003-023-05211-4 [paper, repository]

Measuring human cerebral blood flow and brain function with fiber-based speckle contrast optical spectroscopy system.

Journal: Communications biology

Authors' code: BUNPC/2023-SCOS (no license), Zenodo 8206356 (other-open)

Status: code verified, 10 files readable, 3 matches

[34230] doi:10.1038/s42003-023-05212-3 [paper]

Task-residual effective connectivity of motor network in transient ischemic attack.

Journal: Communications biology

Status: code on request

[34231] doi:10.1073/pnas.2219150120 [paper, repository]

Building transformers from neurons and astrocytes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: kozleo/neuron-astrocyte-transformer (no license)

Status: code verified, 3 files readable, 5 matches

[34232] doi:10.1073/pnas.2301150120 [paper, repository]

Scalable Gaussian process inference of neural responses to natural images.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: samuelevirgili/Scalable-gaussian-process-inference-of-neural-responses-to-natural-images (no license)

Status: code verified, 9 files readable, 4 matches

[34233] doi:10.1073/pnas.2304230120 [paper, repository]

Olfactory search with finite-state controllers.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: kyrellverano/Finite-Memory-Controller (no license)

Status: code verified, 9 files readable

[34234] doi:10.1080/23723556.2023.2246657 [paper, data]

The identification of key genes and pathways in glioblastoma by bioinformatics analysis.

Journal: Molecular & cellular oncology

Status: data only, 1 dataset cited

[34235] doi:10.1083/jcb.202208110 [paper, repository]

Presynapses contain distinct actin nanostructures.

Journal: The Journal of cell biology

Authors' code: cleterrier/ChriSTORM (no license), cleterrier/measure_rois (no license)

Status: code verified, 33 files readable, 2 matches

[34236] doi:10.1101/2023.08.11.552951 [paper, data]

A developmental increase of inhibition promotes the emergence of hippocampal ripples

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[34237] doi:10.1101/2023.08.14.552755 [paper, data]

An ancestral dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[34238] doi:10.1111/jopy.12876 [paper, repository]

There is a party in my head and no one is invited: Resting-state electrocortical activity and solitude.

Journal: Journal of personality

Authors' code: OSF n8cg7 (no license)

Status: empty repository

[34239] doi:10.1177/09567976231188107 [paper, repository]

Self-Relevance Predicts the Aesthetic Appeal of Real and Synthetic Artworks Generated via Neural Style Transfer.

Journal: Psychological science

Authors' code: OSF 6zxc5 (no license), giacomobignardi/empirical-aesthetics-vca (MIT)

Status: code verified, 21 files readable, 7 matches

[34240] doi:10.1186/s12885-023-11131-7 [paper, data]

CRISPR-Cas9 identifies growth-related subtypes of glioblastoma with therapeutical significance through cell line knockdown.

Journal: BMC cancer

Status: data only, 1 dataset cited

[34241] doi:10.3389/adar.2023.11668 [paper, data]

MicroRNA-mediated translational pathways are regulated in the orbitofrontal cortex and peripheral blood samples during acute abstinence from heroin self-administration.

Journal: Advances in drug and alcohol research

Status: data only, 1 dataset cited

[34242] doi:10.3390/brainsci13081201 [paper, data]

Temporal Feature Extraction and Machine Learning for Classification of Sleep Stages Using Telemetry Polysomnography.

Journal: Brain sciences

Status: data only, 2 datasets cited

[34243] doi:10.3390/cancers15164088 [paper, data]

Current Treatment of Melanoma Brain Metastases.

Journal: Cancers

Status: data only, 5 datasets cited

[34244] doi:10.7554/elife.82850 [paper, repository]

Cytoarchitectonic, receptor distribution and functional connectivity analyses of the macaque frontal lobe.

Journal: eLife

Authors' code: seanfw/macaque-pfc-func-conn (MIT)

Status: code verified, 4 files readable, 1 match

Saturday, 12 August 2023 (12 papers)

[34245] doi:10.1016/j.bioactmat.2023.08.009 [paper, data]

Modeling human brain rhabdoid tumor by inactivating tumor suppressor genes in induced pluripotent stem cells.

Journal: Bioactive materials

Status: data only, 1 dataset cited

[34246] doi:10.1016/j.dcn.2023.101290 [paper, data]

Adolescents' neural sensitivity to high and low popularity: Longitudinal links to risk-taking and prosocial behavior.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[34247] doi:10.1016/j.isci.2023.107571 [paper, data]

Topographic representation of visually evoked emotional experiences in the human cerebral cortex.

Journal: iScience

Status: code on request, 3 datasets cited

[34248] doi:10.1016/j.isci.2023.107598 [paper, data]

EpiGe: A machine-learning strategy for rapid classification of medulloblastoma using PCR-based methyl-genotyping.

Journal: iScience

Status: code on request, 1 dataset cited

[34249] doi:10.1016/j.isci.2023.107624 [paper, repository]

Tangent functional connectomes uncover more unique phenotypic traits.

Journal: iScience

Authors' code: engineering.purdue.edu/connplexitylab/publications (no license)

Status: code verified

[34250] doi:10.1016/j.redox.2023.102848 [paper, data]

Protective effects of luteolin against amyloid beta-induced oxidative stress and mitochondrial impairments through peroxisome proliferator-activated receptor γ-dependent mechanism in Alzheimer's disease.

Journal: Redox biology

Status: data only, 1 dataset cited

[34251] doi:10.1038/s41467-023-40666-3 [paper]

Anxious individuals shift emotion control from lateral frontal pole to dorsolateral prefrontal cortex.

Journal: Nature communications

Status: code on request

[34252] doi:10.1038/s41537-023-00375-8 [paper]

Aberrant cortico-thalamo-cerebellar network interactions and their association with impaired cognitive functioning in patients with schizophrenia.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[34253] doi:10.1186/s13020-023-00814-9 [paper, data]

Integrating animal experiments, mass spectrometry and network-based approach to reveal the sleep-improving effects of Ziziphi Spinosae Semen and γ-aminobutyric acid mixture.

Journal: Chinese medicine

Status: code on request, 7 datasets cited

[34254] doi:10.3390/brainsci13081195 [paper, repository]

Associations between Neuropsychiatric Symptoms and Alzheimer's Disease Biomarkers in People with Mild Cognitive Impairment.

Journal: Brain sciences

Authors' code: www0.cs.ucl.ac.uk/staff/g.ridgway (no license)

Status: code verified

[34255] doi:10.3390/ijms241612712 [paper, data]

Molecular Changes in the Brain of the Wintering <i>Calidris pusilla</i> in the Mangroves of the Amazon River Estuary.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[34256] doi:10.3390/s23167137 [paper, data]

A Bio-Inspired Chaos Sensor Model Based on the Perceptron Neural Network: Machine Learning Concept and Application for Computational Neuro-Science.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 11 August 2023 (26 papers, 16 on this page)

[34257] doi:10.1007/s00415-023-11902-z [paper, repository]

Neural correlates of transient topographical disorientation: an experimental EEG-MRI case study.

Journal: Journal of neurology

Authors' code: marinevernet/topographical_disorientation (no license)

Status: code verified, 3 files readable

[34258] doi:10.1016/j.xpro.2023.102493 [paper, data]

Protocol to conduct functional magnetic resonance spectroscopy in different age groups of human participants.

Journal: STAR protocols

Status: data only, 1 dataset cited

[34259] doi:10.1016/j.xpro.2023.102496 [paper, repository]

Protocol to study ischemic stroke by photothrombotic lesioning in the cortex of non-human primates.

Journal: STAR protocols

Authors' code: Zenodo 5963338 (other-open), karamkhateeb/cort_phys_toolbox (no license)

Status: code verified, 116 files readable, 1 match

[34260] doi:10.1016/j.xpro.2023.102513 [paper, repository]

Protocol for geometric transformation of cognitive maps for generalization across hippocampal-prefrontal circuits.

Journal: STAR protocols

Authors' code: JadhavLab/GeometricTransformationProtocol (no license), JadhavLab/GeometricTransformation (Apache-2.0), LorenFrankLab/track_linearization (MIT), mkarlsso/matclust (no license)

Status: code verified, 108 files readable, 8 matches

[34261] doi:10.1038/s41467-023-40486-5 [paper, data]

Spinal cord repair is modulated by the neurogenic factor Hb-egf under direction of a regeneration-associated enhancer.

Journal: Nature communications

Status: data only, 1 dataset cited

[34262] doi:10.1038/s41539-023-00177-8 [paper]

Mnemonic-trained brain tuning to a regular odd-even pattern subserves digit memory in children.

Journal: NPJ science of learning

Status: code on request

[34263] doi:10.1038/s41598-023-39946-1 [paper, repository]

Functional network of contextual and temporal memory has increased amygdala centrality and connectivity with the retrosplenial cortex, thalamus, and hippocampus.

Journal: Scientific reports

Authors' code: coelhocao/Brain_Network_analysis (MIT)

Status: code verified, 23 files readable, 1 match

[34264] doi:10.1038/s41598-023-40212-7 [paper, repository]

Characterizing the circadian connectome of Ocimum tenuiflorum using an integrated network theoretic framework.

Journal: Scientific reports

Authors' code: vikramsinghlab/Pcrp (LGPL-2.1)

Status: code verified, 8 files readable, 1 match

[34265] doi:10.1073/pnas.2306153120 [paper, data]

Transcriptomic analysis of the ocular posterior segment completes a cell atlas of the human eye.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[34266] doi:10.1159/000533203 [paper, data]

Automatic Deep Learning-Based Pipeline for Automatic Delineation and Measurement of Fetal Brain Structures in Routine Mid-Trimester Ultrasound Images.

Journal: Fetal diagnosis and therapy

Status: data only, 2 datasets cited

[34267] doi:10.1186/s12915-023-01660-9 [paper, repository]

An automated, low-latency environment for studying the neural basis of behavior in freely moving rats.

Journal: BMC biology

Authors' code: jniediek/RIFF_publication (MIT), Zenodo 8089123 (other-open)

Status: code verified, 687 files readable, 9 matches

[34268] doi:10.1371/journal.pcbi.1010871 [paper, repository]

Receptive field sizes and neuronal encoding bandwidth are constrained by axonal conduction delays.

Journal: PLoS computational biology

Authors' code: doi:10.12751/g-node.78xqwl (no license), g-node/nix (BSD-3-Clause)

Status: code verified, 124 files readable

[34269] doi:10.1371/journal.pcbi.1011325 [paper, repository]

Functional and spatial rewiring principles jointly regulate context-sensitive computation.

Journal: PLoS computational biology

Authors' code: OSF 8e5s7 (no license)

Status: code verified, 26 files readable, 7 matches

[34270] doi:10.1371/journal.pone.0288555 [paper, repository]

Robust deep learning-based gait event detection across various pathologies.

Journal: PloS one

Authors' code: fhstp/IntellEvent (CC-BY-4.0), LempereurMat/deepevent (CC-BY-NC-SA-4.0)

Status: code verified, 13 files readable, 1 match

[34271] doi:10.1371/journal.pone.0289671 [paper, data]

Spoken language processing activates the primary visual cortex.

Journal: PloS one

Status: data only, 1 dataset cited

[34272] doi:10.1371/journal.pone.0289964 [paper, data]

Opposite effects of rapid auditory stimulation on tetanized and non-tetanized tone of adjacent frequency: Mismatch negativity study.

Journal: PloS one

Status: data only, 1 dataset cited

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