Every paper, by date: page 155

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 155 of 200: 2 August 2023 to 21 July 2023.

Wednesday, 2 August 2023 (30 papers, 1 on this page)

[34497] doi:10.7717/peerj.15810 [paper, data]

Mutation-derived, genomic instability-associated lncRNAs are prognostic markers in gliomas.

Journal: PeerJ

Status: data only, 1 dataset cited

Tuesday, 1 August 2023 (57 papers)

[34498] doi:10.1002/jev2.12358 [paper, data]

Comprehensive characterization of human brain-derived extracellular vesicles using multiple isolation methods: Implications for diagnostic and therapeutic applications.

Journal: Journal of extracellular vesicles

Status: data only, 1 dataset cited

[34499] doi:10.1007/s12195-023-00782-y [paper, repository]

Amyloid-β Pathology-Specific Cytokine Secretion Suppresses Neuronal Mitochondrial Metabolism.

Journal: Cellular and molecular bioengineering

Authors' code: elizabethproctor/Luminex-Data-Cleaning (GPL-3.0)

Status: code verified, 4 files readable, 1 match

[34500] doi:10.1016/j.bpsgos.2023.07.006 [paper, repository]

Enhancing Associative Learning in Rats With a Computationally Designed Training Protocol.

Journal: Biological psychiatry global open science

Authors' code: Owenxz/Zhang-XO-Enhanced-Learning-2022 (no license)

Status: empty repository

[34501] doi:10.1016/j.cell.2023.07.006 [paper, data]

PIEZO2 in somatosensory neurons controls gastrointestinal transit.

Journal: Cell

Status: code on request, 1 dataset cited

[34502] doi:10.1016/j.cell.2023.07.039 [paper, repository]

Phage-assisted evolution and protein engineering yield compact, efficient prime editors.

Journal: Cell

Authors' code: pinellolab/CRISPResso2 (other), hub.docker.com/r/araguram (no license)

Status: code verified, 62 files readable, 2 matches

[34503] doi:10.1016/j.celrep.2023.112934 [paper]

KCC2 reverse mode helps to clear postsynaptically released potassium at glutamatergic synapses.

Journal: Cell reports

Status: code on request

[34504] doi:10.1016/j.heliyon.2023.e18868 [paper, data]

Analysis of potential copy-number variations and genes associated with first-trimester missed abortion.

Journal: Heliyon

Status: data only, 1 dataset cited

[34505] doi:10.1016/j.jbc.2023.105121 [paper, repository]

Development of a versatile LCM-Seq method for spatial transcriptomics of fluorescently tagged cholinergic neuron populations.

Journal: The Journal of biological chemistry

Authors' code: alexdobin/STAR (MIT), goczbalazs/PRJNA901862 (no license)

Status: code verified, 334 files readable, 3 matches

[34506] doi:10.1016/j.neuroimage.2023.120287 [paper, repository]

Profiling intra- and inter-individual differences in brain development across early adolescence.

Journal: NeuroImage

Authors' code: 62442katieb/deltaABCD_variability (no license)

Status: dead link

[34507] doi:10.1016/j.ynpai.2023.100145 [paper, data]

Gene expression changes in the cerebellum are associated with persistent post-injury pain in adolescent rats exposed to early life stress.

Journal: Neurobiology of pain (Cambridge, Mass.)

Status: data only, 1 dataset cited

[34508] doi:10.1038/s12276-023-01048-3 [paper, data]

Olfactory modulation of stress-response neural circuits.

Journal: Experimental & molecular medicine

Status: data only, 1 dataset cited

[34509] doi:10.1038/s12276-023-01065-2 [paper, data]

Dysregulation of the Wnt/β-catenin signaling pathway via Rnf146 upregulation in a VPA-induced mouse model of autism spectrum disorder.

Journal: Experimental & molecular medicine

Status: data only, 1 dataset cited

[34510] doi:10.1038/s41537-023-00376-7 [paper]

Reduced mammillary body volume in individuals with a schizophrenia diagnosis: an analysis of the COBRE data set.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[34511] doi:10.1038/s41598-023-39458-y [paper, repository]

Demonstrating the successful application of synthetic learning in spine surgery for training multi-center models with increased patient privacy.

Journal: Scientific reports

Authors' code: Ethan-schonfeld/SpineGAN (no license)

Status: code verified, 136 files readable, 8 matches

[34512] doi:10.1042/bst20230122 [paper, data]

Structural insights into NMDA receptor pharmacology.

Journal: Biochemical Society transactions

Status: data only, 87 datasets cited

[34513] doi:10.1073/pnas.2221533120 [paper, repository]

Changes in patterns of age-related network connectivity are associated with risk for schizophrenia.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: trendscenter.org/software/gift (no license), Zenodo 7948162 (CC-BY-4.0)

Status: code verified

[34514] doi:10.1073/pnas.2221994120 [paper, repository]

Feasibility of dopamine as a vector-valued feedback signal in the basal ganglia.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: emiwar/diffuse-dopamine-rnn (no license)

Status: code verified, 50 files readable, 1 match

[34515] doi:10.1093/brain/awad044 [paper, repository]

Mitochondrial function-associated genes underlie cortical atrophy in prodromal synucleinopathies.

Journal: Brain : a journal of neurology

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 10 matches

[34516] doi:10.1093/brain/awad056 [paper]

Acute thalamic connectivity precedes chronic post-concussive symptoms in mild traumatic brain injury.

Journal: Brain : a journal of neurology

Status: code on request

[34517] doi:10.1093/brain/awad086 [paper, repository]

A homozygous POLR1A variant causes leukodystrophy and affects protein homeostasis.

Journal: Brain : a journal of neurology

Authors' code: umcugenetics/iap (MIT)

Status: code verified, 25 files readable

[34518] doi:10.1093/cercor/bhad160 [paper, repository]

Ubiquitous lognormal distribution of neuron densities in mammalian cerebral cortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 7871536 (BSD-3-Clause), INM-6/lognormal_neurons (no license)

Status: code verified, 3 files readable, 1 match

[34519] doi:10.1093/cercor/bhad219 [paper, repository]

Age differences in neural distinctiveness during memory encoding, retrieval, and reinstatement.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF rm65w (no license)

Status: code verified, 197 files readable, 8 matches

[34520] doi:10.1093/cercor/bhad222 [paper]

Objects sharpen visual scene representations: evidence from MEG decoding.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[34521] doi:10.1093/cercor/bhad232 [paper, data]

3D synaptic organization of layer III of the human anterior cingulate and temporopolar cortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[34522] doi:10.1093/cercor/bhad235 [paper, repository]

CDKL5 deficiency disorder: progressive brain atrophy may be part of the syndrome.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: ai-med/QuickNATv2 (MIT)

Status: code verified, 23 files readable

[34523] doi:10.1093/cercor/bhad243 [paper, repository]

Geodesic theory of long association fibers arrangement in the human fetal cortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: KazuyaHoribe/GeodesicTheory (no license)

Status: empty repository, 1 file readable

[34524] doi:10.1093/cercor/bhad247 [paper, repository]

Function and biochemistry of the dorsolateral prefrontal cortex during placebo analgesia: how the certainty of prior experiences shapes endogenous pain relief.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: schorschinho.github.io/osprey (no license)

Status: code verified

[34525] doi:10.1093/g3journal/jkad114 [paper, data]

Social defeat stress induces genome-wide 5mC and 5hmC alterations in the mouse brain.

Journal: G3 (Bethesda, Md.)

Status: data only, 2 datasets cited

[34526] doi:10.1093/g3journal/jkad124 [paper, repository]

Generation of LexA enhancer-trap lines in Drosophila by an international scholastic network.

Journal: G3 (Bethesda, Md.)

Authors' code: sanath-2024/StanX_tools (BSD-3-Clause), sanath-2024/stan_x_paper_prep (no license)

Status: code verified, 37 files readable, 5 matches

[34527] doi:10.1093/g3journal/jkad131 [paper, data]

An allelic series of spontaneous Rorb mutant mice exhibit a gait phenotype, changes in retina morphology and behavior, and gene expression signatures associated with the unfolded protein response.

Journal: G3 (Bethesda, Md.)

Status: data only, 1 dataset cited

[34528] doi:10.1093/genetics/iyad061 [paper, repository]

Genetic and genomic analyses of Drosophila melanogaster models of chromatin modification disorders.

Journal: Genetics

Authors' code: rebeccamacpherson/Dmel_models_CSS_NCBRS_CdLS (CC0-1.0)

Status: code verified, 4 files readable, 4 matches

[34529] doi:10.1093/genetics/iyad109 [paper, data]

An angiotensin converting enzyme homolog is required for volatile pheromone detection, odorant binding protein secretion and normal courtship behavior in Drosophila melanogaster.

Journal: Genetics

Status: data only, 1 dataset cited

[34530] doi:10.1093/molbev/msad173 [paper, data]

Integrative Omics Reveals Rapidly Evolving Regulatory Sequences Driving Primate Brain Evolution.

Journal: Molecular biology and evolution

Status: data only, 1 dataset cited

[34531] doi:10.1093/molbev/msad184 [paper, repository]

Comparative Genomic Analysis Identifies Great-Ape-Specific Structural Variants and Their Evolutionary Relevance.

Journal: Molecular biology and evolution

Authors' code: kizzb/Great-apes-specific-SVs (no license)

Status: code verified, 6 files readable, 5 matches

[34532] doi:10.1093/nar/gkad523 [paper, data]

In skeletal muscle and neural crest cells, SMCHD1 regulates biological pathways relevant for Bosma syndrome and facioscapulohumeral dystrophy phenotype.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[34533] doi:10.1093/neuonc/noad032 [paper, data]

Efficient detection and monitoring of pediatric brain malignancies with liquid biopsy based on patient-specific somatic mutation screening.

Journal: Neuro-oncology

Status: data only, 4 datasets cited

[34534] doi:10.1093/neuonc/noad067 [paper, data]

Primary papillary epithelial tumor of the sella and posterior pituitary tumor show similar (epi)genetic features and constitute a single neuro-oncological entity.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[34535] doi:10.1093/scan/nsac039 [paper, data]

Development of social feedback processing and responses in childhood: an fMRI test-replication design in two age cohorts.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[34536] doi:10.1093/scan/nsad038 [paper, repository]

Midfrontal theta as an index of conflict strength in approach-approach vs avoidance-avoidance conflicts.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF tezrj (no license)

Status: code verified, 4 files readable, 4 matches

[34537] doi:10.1093/scan/nsad040 [paper, data]

Differential processing of risk and reward in delinquent and non-delinquent youth.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[34538] doi:10.1097/md.0000000000034706 [paper]

The value of RPS15 and MRPS27 in ischemic stroke.

Journal: Medicine

Status: data only

[34539] doi:10.1101/gad.350597.123 [paper, data]

Uncovering a mammalian neural-specific poly(A) binding protein with unique properties.

Journal: Genes & development

Status: data only, 1 dataset cited

[34540] doi:10.1111/adb.13313 [paper, repository]

Exploring opportunities for drug repurposing and precision medicine in cannabis use disorder using genetics.

Journal: Addiction biology

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable, 2 matches

[34541] doi:10.1167/iovs.64.11.9 [paper, repository]

Impaired Direction Selectivity in the Nucleus of the Optic Tract of Albino Mice.

Journal: Investigative ophthalmology & visual science

Authors' code: JorritMontijn/Acquipix (GPL-3.0), JorritMontijn/UniversalProbeFinder (GPL-3.0), JorritMontijn/EyeTracker (Apache-2.0), JorritMontijn/TuningCurves (no license), JorritMontijn/GeneralAnalysis (Apache-2.0), Zenodo 7104646 (other-open)

Status: code verified, 991 files readable, 14 matches

[34542] doi:10.1186/s13073-023-01212-4 [paper, repository]

Shared genetic architecture between irritable bowel syndrome and psychiatric disorders reveals molecular pathways of the gut-brain axis.

Journal: Genome medicine

Authors' code: precimed/pleiofdr (GPL-3.0), precimed/mixer (GPL-3.0)

Status: code verified, 55 files readable, 1 match

[34543] doi:10.1186/s13229-023-00557-2 [paper, repository]

Shank3 deletion in PV neurons is associated with abnormal behaviors and neuronal functions that are rescued by increasing GABAergic signaling.

Journal: Molecular autism

Authors' code: DidiLamers/PCDH19_ZebraExplore (no license)

Status: code verified, 9 files readable, 3 matches

[34544] doi:10.1210/clinem/dgad147 [paper, repository]

Expanding the Phenotypic Spectrum of Kenny-Caffey Syndrome.

Journal: The Journal of clinical endocrinology and metabolism

Authors' code: figshare 21842832 (CC-BY-4.0)

Status: empty repository

[34545] doi:10.1242/dev.201830 [paper, repository]

Developmental emergence of cortical neurogliaform cell diversity.

Journal: Development (Cambridge, England)

Authors' code: OSF se7gu (no license), gomez-L/neurogliaform (BSD-2-Clause)

Status: code verified, 26 files readable, 12 matches

[34546] doi:10.12998/wjcc.v11.i22.5215 [paper]

Changes in neurotransmitter levels, brain structural characteristics, and their correlation with PANSS scores in patients with first-episode schizophrenia.

Journal: World journal of clinical cases

Status: code on request

[34547] doi:10.3389/fendo.2023.1223021 [paper, data]

Neuropilin 2 in osteoblasts regulates trabecular bone mass in male mice.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[34548] doi:10.3389/fninf.2023.1202156 [paper, repository]

Perfusion-weighted software written in Python for DSC-MRI analysis.

Journal: Frontiers in neuroinformatics

Authors' code: MRI-NOBEL/Perfusion-NOBEL (GPL-3.0)

Status: code verified, 6 files readable, 3 matches

[34549] doi:10.3389/fnins.2023.1224752 [paper, repository]

Incorporating structural plasticity into self-organization recurrent networks for sequence learning.

Journal: Frontiers in neuroscience

Authors' code: yuanyesjtu/RSRN (no license)

Status: code verified, 31 files readable, 2 matches

[34550] doi:10.3389/fnmol.2023.1176823 [paper]

A new Hoxb8FlpO mouse line for intersectional approaches to dissect developmentally defined adult sensorimotor circuits.

Journal: Frontiers in molecular neuroscience

Status: code on request

[34551] doi:10.3758/s13415-023-01115-2 [paper, repository]

Dissociating representations of affect and motion in visual cortices.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: bf777/PCMforR (no license)

Status: code verified, 6 files readable, 2 matches

[34552] doi:10.3758/s13428-023-02185-3 [paper, repository]

CBMAT: a MATLAB toolbox for data preparation and post hoc analyses in neuroimaging meta-analyses.

Journal: Behavior research methods

Authors' code: nimare.readthedocs.io (no license), Jordi-Manuello/CBMAT (Apache-2.0)

Status: code verified, 2 files readable

[34553] doi:10.5607/en23020 [paper, data]

Bias in Prestimulus Motor Cortical Activity Determines Decision-making Error in Rodents.

Journal: Experimental neurobiology

Status: data only, 1 dataset cited

[34554] doi:10.7554/elife.83239 [paper, repository]

How inhibitory and excitatory inputs gate output of the inferior olive.

Journal: eLife

Authors' code: mrio/olivetree (no license)

Status: code verified, 507 files readable, 4 matches

Monday, 31 July 2023 (22 papers)

[34555] doi:10.1002/epi4.12793 [paper, repository]

Exploring the impact of hippocampal sclerosis on white matter tracts and memory in individuals with mesial temporal lobe epilepsy.

Journal: Epilepsia open

Authors' code: pnlbwh/pnlutil (no license), pnlbwh/ukftractography (other), SlicerDMRI/whitematteranalysis (other)

Status: code verified, 482 files readable, 4 matches

[34556] doi:10.1016/j.bbih.2023.100671 [paper, repository]

G protein-coupled receptors: A target for microbial metabolites and a mechanistic link to microbiome-immune-brain interactions.

Journal: Brain, behavior, & immunity - health

Authors' code: gajenderaleti/GPCR-MicrobialMetaboliteInteractions (no license)

Status: empty repository, 1 file readable

[34557] doi:10.1038/s41420-023-01559-y [paper, repository]

CellDeathPred: a deep learning framework for ferroptosis and apoptosis prediction based on cell painting.

Journal: Cell death discovery

Authors' code: peng-lab/celldeathpred (no license)

Status: code verified, 12 files readable, 4 matches

[34558] doi:10.1038/s41598-023-38033-9 [paper, repository]

A neural encoder for earthquake rate forecasting.

Journal: Scientific reports

Authors' code: google-research/google-research (Apache-2.0)

Status: code verified, 2,000 files readable

[34559] doi:10.1038/s41598-023-39467-x [paper, repository]

Investigating structural and functional aspects of the brain's criticality in stroke.

Journal: Scientific reports

Authors' code: grelade/critical-stroke (no license)

Status: code verified, 10 files readable, 4 matches

[34560] doi:10.1038/s41598-023-39640-2 [paper, data]

Non-invasive enhancement of intracortical solute clearance using transcranial focused ultrasound.

Journal: Scientific reports

Status: data only, 1 dataset cited

[34561] doi:10.1038/s42003-023-05168-4 [paper, repository]

Comparative analysis of multifaceted neural effects associated with varying endogenous cognitive load.

Journal: Communications biology

Authors' code: Zenodo 8118580 (CC-BY-4.0)

Status: code verified, 12 files readable, 6 matches

[34562] doi:10.1073/pnas.2300558120 [paper, repository]

NMDA-driven dendritic modulation enables multitask representation learning in hierarchical sensory processing pathways.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 7870103 (CC-BY-4.0)

Status: code verified

[34563] doi:10.1073/pnas.2301730120 [paper, data]

GABAergic miR-34a regulates Dorsal Raphè inhibitory transmission in response to aversive, but not rewarding, stimuli.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[34564] doi:10.1073/pnas.2303647120 [paper, repository]

Quantifying common and distinct information in single-cell multimodal data with Tilted Canonical Correlation Analysis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: linnykos/tiltedCCA (MIT), linnykos/tiltedCCA_analysis (no license), rargelaguet/mouse_organogenesis_10x_multiome_publication (no license)

Status: code verified, 643 files readable, 6 matches

[34565] doi:10.1186/s12868-023-00811-6 [paper, data]

Transcriptome analysis reveals the neuroprotective effect of Dlg4 against fastigial nucleus stimulation-induced ischemia/reperfusion injury in rats.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[34566] doi:10.1186/s12915-023-01661-8 [paper, repository]

Expanded olfactory system in ray-finned fishes capable of terrestrial exploration.

Journal: BMC biology

Authors' code: vgp/vgp-assembly (BSD-3-Clause)

Status: code verified, 313 files readable, 2 matches

[34567] doi:10.1186/s40478-023-01613-x [paper, data]

Decoding key cell sub-populations and molecular alterations in glioblastoma at recurrence by single-cell analysis.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[34568] doi:10.1371/journal.pcbi.1011335 [paper, repository]

SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.

Journal: PLoS computational biology

Authors' code: bsotomayorg/SpikeShip (MIT)

Status: code verified, 11 files readable

[34569] doi:10.1371/journal.pone.0289124 [paper, data]

A longitudinal analysis of selective motor control during gait in individuals with cerebral palsy and the relation to gait deviations.

Journal: PloS one

Status: data only, 1 dataset cited

[34570] doi:10.3389/fncom.2023.1143323 [paper, repository]

Tutorial: using NEURON for neuromechanical simulations.

Journal: Frontiers in computational neuroscience

Authors' code: fietkiewicz/PointerBuilder (no license)

Status: code verified, 56 files readable, 7 matches

[34571] doi:10.3389/fnins.2023.1175690 [paper, repository]

Multivariate analytical approaches for investigating brain-behavior relationships.

Journal: Frontiers in neuroscience

Authors' code: VU-BRAINS-lab/ABCD_PLSCCA_Vol (no license)

Status: dead link

[34572] doi:10.3389/fnins.2023.1210175 [paper, data]

Traumatic brain injury induces an adaptive immune response in the meningeal transcriptome that is amplified by aging.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[34573] doi:10.3390/bioengineering10080909 [paper, repository]

Learning Causal Biological Networks with Parallel Ant Colony Optimization Algorithm.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: huawei-noah/trustworthyAI (Apache-2.0), ZJH66/PACO (no license)

Status: code verified, 323 files readable, 5 matches

[34574] doi:10.3390/diagnostics13152537 [paper, repository]

A Deep Learning-Based Automatic Segmentation and 3D Visualization Technique for Intracranial Hemorrhage Detection Using Computed Tomography Images.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: WuChanada/StripSkullCT (BSD-3-Clause)

Status: code verified, 45 files readable

[34575] doi:10.3390/diagnostics13152544 [paper, data]

Enhancing Prediction of Brain Tumor Classification Using Images and Numerical Data Features.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[34576] doi:10.3390/genes14081565 [paper, data]

Aicardi Syndrome Is a Genetically Heterogeneous Disorder.

Journal: Genes

Status: data only, 1 dataset cited

Sunday, 30 July 2023 (3 papers)

[34577] doi:10.1002/hbm.26435 [paper, repository]

An automated pipeline for obtaining labeled ICA-templates corresponding to functional brain systems.

Journal: Human brain mapping

Authors' code: OSF mek47 (no license)

Status: code verified, 3 files readable, 1 match

[34578] doi:10.1111/ejn.16101 [paper, data]

Tactile estimation of hedonic and sensory properties during active touch: An electroencephalography study.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[34579] doi:10.3390/nu15153390 [paper, data]

Alzheimer's Disease Genetic Influences Impact the Associations between Diet and Resting-State Functional Connectivity: A Study from the UK Biobank.

Journal: Nutrients

Status: data only, 1 dataset cited

Saturday, 29 July 2023 (12 papers)

[34580] doi:10.1002/hbm.26426 [paper, repository]

Bloody noise: The impact of blood-flow artifacts on registration.

Journal: Human brain mapping

Authors' code: gin.g-node.org/johndlewis/bloodynoise (no license)

Status: code verified

[34581] doi:10.1007/s10548-023-00993-6 [paper, repository]

EEG-Meta-Microstates: Towards a More Objective Use of Resting-State EEG Microstate Findings Across Studies.

Journal: Brain topography

Authors' code: ThomasKoenigBern/MS-Template-Explorer (GPL-3.0)

Status: code verified, 25 files readable

[34582] doi:10.1016/j.dcn.2023.101287 [paper, repository]

Resting brain activity in early childhood predicts IQ at 18 years.

Journal: Developmental cognitive neuroscience

Authors' code: OSF 4hfc7 (no license)

Status: code verified, 1 file readable, 2 matches

[34583] doi:10.1016/j.isci.2023.107514 [paper]

Intergenerational association of gut microbiota and metabolism with perinatal folate metabolism and neural tube defects.

Journal: iScience

Status: code on request

[34584] doi:10.1016/j.neuroimage.2023.120294 [paper, repository]

Mitigating susceptibility-induced distortions in high-resolution 3DEPI fMRI at 7T.

Journal: NeuroImage

Authors' code: fil-physics/publication-code (GPL-2.0)

Status: code verified, 204 files readable, 16 matches

[34585] doi:10.1016/j.neuroimage.2023.120300 [paper, repository]

Causally informed activity flow models provide mechanistic insight into network-generated cognitive activations.

Journal: NeuroImage

Authors' code: ColeLab/DirectedActflow_release (no license), cmu-phil/tetrad (GPL-3.0)

Status: code verified, 2,008 files readable, 2 matches

[34586] doi:10.1038/s41597-023-02396-5 [paper, repository]

Multimodal neuroimaging data from a 5-week heart rate variability biofeedback randomized clinical trial.

Journal: Scientific data

Authors' code: EmotionCognitionLab/HRV-ER-dataset_release (MIT), EmotionCognitionLab/emWave_HRV (MIT)

Status: code verified, 7 files readable, 1 match

[34587] doi:10.1038/s41598-023-38782-7 [paper, repository]

Externally validated deep learning model to identify prodromal Parkinson's disease from electrocardiogram.

Journal: Scientific reports

Authors' code: ikarabayir/PD_ECG_CNN_Risk (GPL-3.0)

Status: code verified, 3 files readable

[34588] doi:10.1038/s42003-023-05147-9 [paper, data]

An iPSC-derived astrocyte model of fragile X syndrome exhibits dysregulated cholesterol homeostasis.

Journal: Communications biology

Status: data only, 1 dataset cited

[34589] doi:10.1049/syb2.12074 [paper, repository]

Single-cell RNA sequencing identifies macrophage signatures correlated with clinical features and tumour microenvironment in meningiomas.

Journal: IET systems biology

Authors' code: smorabit.github.io/hdwgcna (no license)

Status: code verified

[34590] doi:10.1186/s12885-023-11202-9 [paper, repository]

Hypofractionated stereotactic radiotherapy (HFSRT) versus single fraction stereotactic radiosurgery (SRS) to the resection cavity of brain metastases after surgical resection (SATURNUS): study protocol for a randomized phase III trial.

Journal: BMC cancer

Authors' code: med.tum.de/en/ethics-commission (no license)

Status: dead link

[34591] doi:10.3390/nu15153381 [paper, data]

Alleviation of Cognitive Impairment-like Behaviors, Neuroinflammation, Colitis, and Gut Dysbiosis in 5xFAD Transgenic and Aged Mice by <i>Lactobacillus mucosae</i> and <i>Bifidobacterium longum</i>.

Journal: Nutrients

Status: data only, 1 dataset cited

Friday, 28 July 2023 (29 papers)

[34592] doi:10.1002/hbm.26433 [paper, repository]

Proactive and reactive language control in bilingual language production revealed by decoding sustained potentials and electroencephalography oscillations.

Journal: Human brain mapping

Authors' code: ammsimmons/binorg_decoding (GPL-3.0)

Status: code verified, 8 files readable, 2 matches

[34593] doi:10.1007/s00018-023-04887-5 [paper, data]

Collagen VI sustains cell stemness and chemotherapy resistance in glioblastoma.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[34594] doi:10.1016/j.celrep.2023.112865 [paper]

Electrophysiological signatures of inequity-dependent reward encoding in the human OFC.

Journal: Cell reports

Status: code on request

[34595] doi:10.1016/j.cub.2023.07.009 [paper, repository]

An unconventional TOG domain is required for CLASP localization.

Journal: Current biology : CB

Authors' code: sokrypton/ColabFold (MIT)

Status: code verified, 74 files readable, 3 matches

[34596] doi:10.1016/j.ebiom.2023.104725 [paper, repository]

Neuronal actin cytoskeleton gain of function in the human brain.

Journal: EBioMedicine

Authors' code: mbb-team/vba-toolbox (GPL-3.0)

Status: code verified, 576 files readable

[34597] doi:10.1016/j.ijchp.2023.100397 [paper]

Neuroanatomical and functional substrates of the hypomanic personality trait and its prediction on aggression.

Journal: International journal of clinical and health psychology : IJCHP

Status: code on request

[34598] doi:10.1016/j.isci.2023.107501 [paper]

<i>hGFAP</i>-mediated <i>GLI2</i> overexpression leads to early death and severe cerebellar malformations with rare tumor formation.

Journal: iScience

Status: code on request

[34599] doi:10.1016/j.isci.2023.107505 [paper]

<i>C9orf72</i> poly(PR) mediated neurodegeneration is associated with nucleolar stress.

Journal: iScience

Status: code on request

[34600] doi:10.1016/j.neuron.2023.06.018 [paper, repository]

Play and tickling responses map to the lateral columns of the rat periaqueductal gray.

Journal: Neuron

Authors' code: DrCoffey/DeepSqueak (BSD-3-Clause)

Status: code verified, 87 files readable

[34601] doi:10.1016/j.nicl.2023.103482 [paper, repository]

An extended clinical EEG dataset with 15,300 automatically labelled recordings for pathology decoding.

Journal: NeuroImage. Clinical

Authors' code: AKiessner/TUHAbnormal-Expansion-dataset (no license)

Status: code verified, 7 files readable, 2 matches

[34602] doi:10.1016/j.nicl.2023.103483 [paper, repository]

Validation of deep learning techniques for quality augmentation in diffusion MRI for clinical studies.

Journal: NeuroImage. Clinical

Authors' code: myigitavci (no license), qiyuantian/DeepDTI (MIT), chaineypung (no license), sbb-gh/PROSUB (Apache-2.0)

Status: code verified, 18 files readable, 2 matches

[34603] doi:10.1016/j.xpro.2023.102453 [paper, repository]

Two-photon manipulation of neuronal activity and behavior in Hydra vulgaris.

Journal: STAR protocols

Authors' code: NTCColumbia (no license), ntccolumbia/hydra_somersaulting (MIT), Zenodo 8011802 (other-open)

Status: code verified, 13 files readable, 3 matches

[34604] doi:10.1038/s41467-023-40285-y [paper, repository]

Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex.

Journal: Nature communications

Authors' code: Zenodo 7942472 (other-open), montalvoortizlab/RRoxBS (no license)

Status: code verified, 10 files readable, 5 matches

[34605] doi:10.1038/s41598-023-39456-0 [paper, repository]

Electrophysiological evidence for sensitization effects elicited by concurrent social threats.

Journal: Scientific reports

Authors' code: OSF kad5t (no license)

Status: code verified, 6 files readable

[34606] doi:10.1126/sciadv.adi0286 [paper, repository]

PTBP1 regulates injury responses and sensory pathways in adult peripheral neurons.

Journal: Science advances

Authors' code: Zenodo 8006804 (other-open), rkawaguc/rnaseq-pipeline (no license)

Status: code verified, 38 files readable, 3 matches

[34607] doi:10.1186/s12883-023-03336-x [paper, repository]

Assessing volumetric brain differences in migraine and depression patients: a UK Biobank study.

Journal: BMC neurology

Authors' code: OresteAffatato/Migraine_Depression_MRI_project (no license)

Status: code verified, 2 files readable, 5 matches

[34608] doi:10.1186/s13073-023-01203-5 [paper, data]

Morphological and transcriptomic analyses of stem cell-derived cortical neurons reveal mechanisms underlying synaptic dysfunction in schizophrenia.

Journal: Genome medicine

Status: data only, 2 datasets cited

[34609] doi:10.1186/s13287-023-03422-4 [paper, data]

hESC-derived striatal progenitors grafted into a Huntington's disease rat model support long-term functional motor recovery by differentiating, self-organizing and connecting into the lesioned striatum.

Journal: Stem cell research & therapy

Status: data only, 3 datasets cited

[34610] doi:10.1242/dmm.050169 [paper, data]

Attenuated cerebellar phenotypes in Inpp4a truncation mutants with preserved phosphatase activity.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[34611] doi:10.12688/f1000research.131507.2 [paper, data]

Modelling host- <i>Trypanosoma brucei gambiense</i> interactions <i>in vitro</i> using human induced pluripotent stem cell-derived cortical brain organoids.

Journal: F1000Research

Status: data only, 1 dataset cited

[34612] doi:10.1371/journal.pone.0289204 [paper, repository]

Assemble the shallow or integrate a deep? Toward a lightweight solution for glyph-aware Chinese text classification.

Journal: PloS one

Authors' code: SophonPlus/ChineseNlpCorpus (no license)

Status: code verified, 18 files readable

[34613] doi:10.1371/journal.pone.0289313 [paper, repository]

Implicit bias training can remove bias from subliminal stimuli, restoring choice divergence: A proof-of-concept study.

Journal: PloS one

Authors' code: OSF 35tqf (no license)

Status: code verified, 6 files readable, 1 match

[34614] doi:10.1523/jneurosci.1337-22.2023 [paper]

The VLPFC-Engaged Voluntary Emotion Regulation: Combined TMS-fMRI Evidence for the Neural Circuit of Cognitive Reappraisal.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: code on request

[34615] doi:10.1523/jneurosci.2260-21.2023 [paper, repository]

Evidence Accumulation Rate Moderates the Relationship between Enriched Environment Exposure and Age-Related Response Speed Declines.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: gerontium/big_dots (CC-BY-NC-SA-4.0), OSF vupa4 (no license), shou-han/DetectionDDM (no license)

Status: code verified, 52 files readable, 8 matches

[34616] doi:10.3389/fcimb.2023.1217984 [paper, repository]

MicroRNA expression profile of human umbilical vein endothelial cells in response to coxsackievirus A10 infection reveals a potential role of miR-143-3p in maintaining the integrity of the blood-brain barrier.

Journal: Frontiers in cellular and infection microbiology

Authors' code: sourceforge.net/mireap (no license)

Status: code verified

[34617] doi:10.3389/fnagi.2023.1204134 [paper, repository]

Virtual brain simulations reveal network-specific parameters in neurodegenerative dementias.

Journal: Frontiers in aging neuroscience

Authors' code: BrainModes/fast_tvb (MIT)

Status: code verified, 6 files readable, 2 matches

[34618] doi:10.3389/fnins.2023.1218072 [paper, data]

Micro SleepNet: efficient deep learning model for mobile terminal real-time sleep staging.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[34619] doi:10.3390/bioengineering10080898 [paper]

Validation of Lead-DBS β-Oscillation Localization with Directional Electrodes.

Journal: Bioengineering (Basel, Switzerland)

Status: code on request

[34620] doi:10.3390/cancers15153852 [paper, repository]

Grey Matter Reshaping of Language-Related Regions Depends on Tumor Lateralization.

Journal: Cancers

Authors' code: lmansoo (no license)

Status: code verified

Thursday, 27 July 2023 (25 papers)

[34621] doi:10.1016/j.celrep.2023.112901 [paper, repository]

Cell-type-specific disruption of cortico-striatal circuitry drives repetitive patterns of behavior in fragile X syndrome model mice.

Journal: Cell reports

Authors' code: TritschLab/TLab-2P-analysis (no license), HarveyLab/Acquisition2P_class (MIT)

Status: code verified, 178 files readable

[34622] doi:10.1016/j.dcn.2023.101284 [paper, repository]

Mapping the evolution of regional brain network efficiency and its association with cognitive abilities during the first twenty-eight months of life.

Journal: Developmental cognitive neuroscience

Authors' code: nda.nih.gov (no license)

Status: code verified

[34623] doi:10.1016/j.isci.2023.107480 [paper, data]

A tetracationic porphyrin with dual anti-prion activity.

Journal: iScience

Status: code on request, 1 dataset cited

[34624] doi:10.1016/j.neuroimage.2023.120283 [paper, repository]

Systematic cortical thickness and curvature patterns in primates.

Journal: NeuroImage

Authors' code: mholla/curveball (GPL-3.0), mholla/NIMG23 (GPL-3.0), jms290/nmt (no license), viko18/JunaChimp (GPL-3.0), chimpanzeebrain.org (no license)

Status: code verified, 64 files readable, 16 matches

[34625] doi:10.1037/rev0000436 [paper, repository]

A maturational frequency discrimination deficit may explain developmental language disorder.

Journal: Psychological review

Authors' code: schung039/neural_manifolds_replicaMFT (no license), OSF x2h8k (no license)

Status: code verified, 9 files readable

[34626] doi:10.1038/s41420-023-01569-w [paper, repository]

The spatiotemporal dynamics of spatially variable genes in developing mouse brain revealed by a novel computational scheme.

Journal: Cell death discovery

Authors' code: CPenglab/svgbit (GPL-3.0), pypi.org/project/svgbit (no license)

Status: code verified, 21 files readable

[34627] doi:10.1038/s41467-023-40139-7 [paper, repository]

Hippocampal ensemble dynamics and memory performance are modulated by respiration during encoding.

Journal: Nature communications

Authors' code: nakamunh/Nakamura_2023_Nat_Commun (no license)

Status: code verified, 3 files readable

[34628] doi:10.1038/s41590-023-01558-2 [paper]

Exposure of iPSC-derived human microglia to brain substrates enables the generation and manipulation of diverse transcriptional states in vitro.

Journal: Nature immunology

Status: code on request

[34629] doi:10.1038/s41593-023-01396-3 [paper, repository]

Pedunculopontine Chx10⁺ neurons control global motor arrest in mice.

Journal: Nature neuroscience

Authors' code: kiehnlab/pauseandplay (MIT), Zenodo 8013911 (MIT)

Status: code verified, 16 files readable, 1 match

[34630] doi:10.1038/s41598-023-39276-2 [paper, data]

A single case neuroimaging study of tickertape synesthesia.

Journal: Scientific reports

Status: data only, 1 dataset cited

[34631] doi:10.1111/cns.14382 [paper, repository]

A data-driven approach to complement the A/T/(N) classification system using CSF biomarkers.

Journal: CNS neuroscience & therapeutics

Authors' code: laurahdezlorenzo/CSF_clustering (MIT)

Status: code verified, 10 files readable, 3 matches

[34632] doi:10.1186/s13023-023-02785-4 [paper, repository]

Machine learning in Huntington's disease: exploring the Enroll-HD dataset for prognosis and driving capability prediction.

Journal: Orphanet journal of rare diseases

Authors' code: jaspero98/hdml (MIT), Zenodo 7620222 (MIT)

Status: code verified, 25 files readable, 17 matches

[34633] doi:10.3389/fimmu.2023.1175873 [paper]

Causality between inflammatory bowel disease and the cerebral cortex: insights from Mendelian randomization and integrated bioinformatics analysis.

Journal: Frontiers in immunology

Status: code on request

[34634] doi:10.3389/fnagi.2023.1221667 [paper, repository]

Evaluation of glymphatic system activity using diffusion tensor image analysis along the perivascular space and amyloid PET in older adults with objectively normal cognition: a preliminary study.

Journal: Frontiers in aging neuroscience

Authors' code: GGonEsc/petpve12 (GPL-3.0)

Status: code verified, 59 files readable, 2 matches

[34635] doi:10.3389/fncom.2023.1132160 [paper, repository]

Hyperscanning fNIRS data analysis using multiregression dynamic models: an illustration in a violin duo.

Journal: Frontiers in computational neuroscience

Authors' code: ProfNascimento/MDM-BF (no license)

Status: code verified, 2 files readable, 2 matches

[34636] doi:10.3389/fneur.2023.1203241 [paper, repository]

Automated acute ischemic stroke lesion delineation based on apparent diffusion coefficient thresholds.

Journal: Frontiers in neurology

Authors' code: goschv/ADC_threshold_study (MIT)

Status: code verified, 11 files readable, 8 matches

[34637] doi:10.3389/fnins.2023.1206688 [paper, data]

Systemic alterations of tricarboxylic acid cycle enzymes in Alzheimer's disease.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[34638] doi:10.3389/fnmol.2023.1087136 [paper]

Heterogeneity in quiescent Müller glia in the uninjured zebrafish retina drive differential responses following photoreceptor ablation.

Journal: Frontiers in molecular neuroscience

Status: data only

[34639] doi:10.3390/biology12081058 [paper, repository]

Identification of Two Subsets of Subcompartment A1 Associated with High Transcriptional Activity and Frequent Loop Extrusion.

Journal: Biology

Authors' code: deeptools/pyBigWig (MIT)

Status: code verified, 16 files readable

[34640] doi:10.3390/cells12151951 [paper, repository]

Inducible <i>Rbpms</i>-CreER^T2 Mouse Line for Studying Gene Function in Retinal Ganglion Cell Physiology and Disease.

Journal: Cells

Authors' code: usadellab/Trimmomatic (GPL-3.0)

Status: code verified, 152 files readable

[34641] doi:10.3390/diagnostics13152511 [paper]

Radiomics and Hybrid Models Based on Machine Learning to Predict Levodopa-Induced Dyskinesia of Parkinson's Disease in the First 6 Years of Levodopa Treatment.

Journal: Diagnostics (Basel, Switzerland)

Status: code on request

[34642] doi:10.3390/v15081632 [paper, data]

Morphological and Molecular Changes in the Cortex and Cerebellum of Immunocompetent Mice Infected with Zika Virus.

Journal: Viruses

Status: data only, 1 dataset cited

[34643] doi:10.34133/cbsystems.0045 [paper, repository]

Cross-Subject Emotion Recognition Brain-Computer Interface Based on fNIRS and DBJNet.

Journal: Cyborg and bionic systems (Washington, D.C.)

Authors' code: ThreePoundUniverse/2023CBS (no license)

Status: code verified, 16 files readable, 1 match

[34644] doi:10.7554/elife.78205 [paper, repository]

Monkeys exhibit human-like gaze biases in economic decisions.

Journal: eLife

Authors' code: OSF hkgmn (no license), glambox.readthedocs.io (no license)

Status: code verified, 2 files readable

[34645] doi:10.7554/elife.80777 [paper, repository]

A brain-wide analysis maps structural evolution to distinct anatomical module.

Journal: eLife

Authors' code: doi:10.5061/dryad.w9ghx3frw (no license), supp:PMC10435234/elife-80777-code1.zip (no license), supp:PMC10435234/elife-80777-code2.zip (no license), Zenodo 6780011 (MIT)

Status: code verified, 7 files readable, 4 matches

Wednesday, 26 July 2023 (20 papers)

[34646] doi:10.1002/brb3.3181 [paper, data]

Pseudo-mutual gazing enhances interbrain synchrony during remote joint attention tasking.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[34647] doi:10.1002/hbm.26418 [paper, data]

Divergent auditory activation in relation to inhibition task performance in children and adults.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[34648] doi:10.1007/s11357-023-00878-3 [paper, repository]

Pan-primate studies of age and sex.

Journal: GeroScience

Authors' code: shorvath/mammalianmethylationconsortium (MIT)

Status: code verified, 50 files readable, 6 matches

[34649] doi:10.1016/j.celrep.2023.112883 [paper]

COPI-regulated mitochondria-ER contact site formation maintains axonal integrity.

Journal: Cell reports

Status: code on request

[34650] doi:10.1016/j.dcn.2023.101281 [paper, repository]

The Hitchhiker's guide to longitudinal models: A primer on model selection for repeated-measures methods.

Journal: Developmental cognitive neuroscience

Authors' code: OSF bn6yu (no license)

Status: code verified, 14 files readable, 2 matches

[34651] doi:10.1016/j.devcel.2023.07.003 [paper, repository]

A transcriptional and regulatory map of mouse somite maturation.

Journal: Developmental cell

Authors' code: alexdobin/STAR (MIT), lh3/bwa (GPL-3.0), arq5x/bedtools2 (MIT), xibarrasoria/somitogenesis2022 (no license)

Status: code verified, 889 files readable, 31 matches

[34652] doi:10.1016/j.redox.2023.102830 [paper, repository]

Limited expression of Nrf2 in neurons across the central nervous system.

Journal: Redox biology

Authors' code: levin252/NRF2_brain_single-cell-analysis (CC-BY-4.0)

Status: code verified, 2 files readable, 8 matches

[34653] doi:10.1038/s41380-023-02178-w [paper]

In vivo evidence of microstructural hypo-connectivity of brain white matter in 22q11.2 deletion syndrome.

Journal: Molecular psychiatry

Status: code on request

[34654] doi:10.1038/s41597-023-02389-4 [paper, repository]

AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures.

Journal: Scientific data

Authors' code: tgbugs/pyontutils (MIT), Zenodo 7885728 (Apache-2.0), Zenodo 7885733 (Apache-2.0), Zenodo 7946734 (MIT), fzj-inm1-bda/siibra-python (Apache-2.0), fzj-inm1-bda/siibra-explorer (Apache-2.0)

Status: code verified, 2,025 files readable, 8 matches

[34655] doi:10.1038/s42003-023-05093-6 [paper, repository]

5-HT2AR and NMDAR psychedelics induce similar hyper-synchronous states in the rat cognitive-limbic cortex-basal ganglia system.

Journal: Communications biology

Authors' code: NRC-Lund/ct-tools (AGPL-3.0), NRC-Lund/htrdetector (MIT)

Status: code verified, 35 files readable, 5 matches

[34656] doi:10.1038/s42003-023-05099-0 [paper, repository]

Evolutionary modeling suggests that addictions may be driven by competition-induced microbiome dysbiosis.

Journal: Communications biology

Authors' code: Zenodo 8028697 (CC-BY-4.0)

Status: code verified, 2 files readable, 1 match

[34657] doi:10.1186/s12974-023-02823-9 [paper, data]

Physiological expression of mutated TAU impaired astrocyte activity and exacerbates β-amyloid pathology in 5xFAD mice.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[34658] doi:10.1371/journal.pone.0287205 [paper, data]

Spontaneous urinary bladder regeneration after subtotal cystectomy increases YAP/WWTR1 signaling and downstream BDNF expression: Implications for smooth muscle injury responses.

Journal: PloS one

Status: data only, 1 dataset cited

[34659] doi:10.1371/journal.pone.0288137 [paper, data]

Matters of development and experience: Evaluation of dog and human emotional expressions by children and adults.

Journal: PloS one

Status: data only, 1 dataset cited

[34660] doi:10.1371/journal.pone.0288691 [paper, data]

"My brain freezes and I am blocked again": The subjective experience of post-migration living difficulties influenced by complex posttraumatic stress disorder of Afghan asylum seekers and refugees in Austria.

Journal: PloS one

Status: data only, 1 dataset cited

[34661] doi:10.3389/fcell.2023.1180483 [paper, data]

Krill oil treatment ameliorates lipid metabolism imbalance in chronic unpredicted mild stress-induced depression-like behavior in mice.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[34662] doi:10.3389/fncir.2023.1223334 [paper, repository]

Distinctive features of the central synaptic organization of &lt;i&gt;Drosophila&lt;/i&gt; larval proprioceptors.

Journal: Frontiers in neural circuits

Authors' code: navis-org/pymaid (GPL-3.0), HeckscherLab/proprio-synapse-org (no license)

Status: code verified, 60 files readable, 8 matches

[34663] doi:10.3389/fnut.2023.1190392 [paper, data]

Strain-specific changes in nucleus accumbens transcriptome and motivation for palatable food reward in mice exposed to maternal separation.

Journal: Frontiers in nutrition

Status: data only, 1 dataset cited

[34664] doi:10.3390/s23156707 [paper, repository]

Adaptive Template Reconstruction for Effective Pattern Classification.

Journal: Sensors (Basel, Switzerland)

Authors' code: zalandoresearch/fashion-mnist (MIT)

Status: code verified, 14 files readable

[34665] doi:10.7717/peerj-cs.1452 [paper, repository]

An automatic system for extracting figure-caption pair from medical documents: a six-fold approach.

Journal: PeerJ. Computer science

Authors' code: Jyotismita-1/figure-caption (no license)

Status: code verified, 9 files readable, 2 matches

Tuesday, 25 July 2023 (21 papers)

[34666] doi:10.1016/j.dcn.2023.101285 [paper, repository]

Neural correlates of theory of mind reasoning in congenitally blind children.

Journal: Developmental cognitive neuroscience

Authors' code: OSF pavdg (no license)

Status: code verified, 1 file readable, 3 matches

[34667] doi:10.1016/j.isci.2023.107476 [paper]

Increased NMDARs in neurons and glutamine synthetase in astrocytes underlying autistic-like behaviors of <i>Gabrb1</i>^-/- mice.

Journal: iScience

Status: code on request

[34668] doi:10.1016/j.jpha.2023.07.013 [paper, repository]

Pregnenolone 16α-carbonitrile negatively regulates hippocampal cytochrome P450 enzymes and ameliorates phenytoin-induced hippocampal neurotoxicity.

Journal: Journal of pharmaceutical analysis

Authors' code: zhsh006/PXR_Pub (no license)

Status: code verified, 6 files readable, 4 matches

[34669] doi:10.1016/j.ynirp.2023.100179 [paper, data]

White matter microstructural integrity continues to develop from adolescence to young adulthood in mice and humans: Same phenotype, different mechanism.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

[34670] doi:10.1038/s41467-023-40208-x [paper, data]

Compilation of reported protein changes in the brain in Alzheimer's disease.

Journal: Nature communications

Status: data only, 1 dataset cited

[34671] doi:10.1038/s41598-023-36099-z [paper, repository]

Spatiotemporal visual statistics of aquatic environments in the natural habitats of zebrafish.

Journal: Scientific reports

Authors' code: eacooper/ZebrafishAquaticVisualStatsCode (MIT)

Status: code verified, 31 files readable, 6 matches

[34672] doi:10.1038/s41598-023-38761-y [paper, repository]

A deep semantic matching approach for identifying relevant messages for social media analysis.

Journal: Scientific reports

Authors' code: brownworth/TwitterNLP (no license)

Status: code verified, 2 files readable, 1 match

[34673] doi:10.1038/s41598-023-38870-8 [paper, data]

Distinct sensorimotor mechanisms underlie the control of grasp and manipulation forces for dexterous manipulation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[34674] doi:10.1038/s42003-023-05155-9 [paper, repository]

VBASS enables integration of single cell gene expression data in Bayesian association analysis of rare variants.

Journal: Communications biology

Authors' code: ShenLab/VBASS (no license), Zenodo 8018227 (other-open), Zenodo 8018228 (other-open)

Status: code verified, 95 files readable, 8 matches

[34675] doi:10.1038/s43856-023-00333-6 [paper, repository]

Quantification of race/ethnicity representation in Alzheimer's disease neuroimaging research in the USA: a systematic review.

Journal: Communications medicine

Authors' code: aaronclim/adreview (no license), Zenodo 8096807 (other-open)

Status: code verified, 4 files readable

[34676] doi:10.1073/pnas.2305001120 [paper, repository]

Network bypasses sustain complexity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: lucaslacasa/bypasses (no license)

Status: code verified, 4 files readable

[34677] doi:10.1101/gad.350594.123 [paper, data]

Histone bivalency regulates the timing of cerebellar granule cell development.

Journal: Genes & development

Status: data only, 2 datasets cited

[34678] doi:10.1111/acel.13924 [paper, repository]

Delayed formation of neural representations of space in aged mice.

Journal: Aging cell

Authors' code: GoncalvesLab/McDermott-et-al-aging (BSD-3-Clause)

Status: code verified, 5 files readable

[34679] doi:10.1186/s12916-023-02982-9 [paper, data]

Assessment of bidirectional relationships between brain imaging-derived phenotypes and stroke: a Mendelian randomization study.

Journal: BMC medicine

Status: data only, 1 dataset cited

[34680] doi:10.1186/s40779-023-00470-y [paper, data]

RARRES2 regulates lipid metabolic reprogramming to mediate the development of brain metastasis in triple negative breast cancer.

Journal: Military Medical Research

Status: data only, 2 datasets cited

[34681] doi:10.12688/f1000research.139755.1 [paper, repository]

The identification of high-performing antibodies for Charged multivesicular body protein 2b for use in Western Blot, immunoprecipitation and immunofluorescence.

Journal: F1000Research

Authors' code: Zenodo 5717498 (CC-BY-4.0), Zenodo 5717510 (CC-BY-4.0), Zenodo 5717516 (CC-BY-4.0)

Status: empty repository

[34682] doi:10.3389/fnimg.2023.1157565 [paper, data]

Label-efficient deep semantic segmentation of intracranial hemorrhages in CT-scans.

Journal: Frontiers in neuroimaging

Status: data only, 2 datasets cited

[34683] doi:10.3389/fnins.2023.1194713 [paper, repository]

Learning parallel and hierarchical mechanisms for edge detection.

Journal: Frontiers in neuroscience

Authors' code: PXinTao/PHNet (no license)

Status: code verified, 10 files readable, 1 match

[34684] doi:10.3389/fnins.2023.1222815 [paper, repository]

State-of-the-art image and video quality assessment with a metric based on an intrinsically non-linear neural summation model.

Journal: Frontiers in neuroscience

Authors' code: raullunadelvalle/INRF-IQA-VQA (GPL-3.0)

Status: code verified, 7 files readable, 1 match

[34685] doi:10.7554/elife.85910 [paper, repository]

Continuous odor profile monitoring to study olfactory navigation in small animals.

Journal: eLife

Authors' code: figshare 21737303 (CC-BY-4.0), GershowLab/OdorSensorArray (gnu), Kevin-Sean-Chen/leifer-Behavior-Triggered-Averaging-Tracker-new (GPL-3.0), GershowLab/Chen-Wu-eLife-Drosophila-Image-Capture (GPL-2.0)

Status: code verified, 406 files readable, 4 matches

[34686] doi:10.7554/elife.88206 [paper, data]

Discovery and characterization of a specific inhibitor of serine-threonine kinase cyclin-dependent kinase-like 5 (CDKL5) demonstrates role in hippocampal CA1 physiology.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 24 July 2023 (20 papers)

[34687] doi:10.1016/j.heliyon.2023.e18433 [paper, repository]

Crowdsourced EEG experiments: A proof of concept for remote EEG acquisition using EmotivPRO Builder and EmotivLABS.

Journal: Heliyon

Authors' code: OSF 9bvgh (no license)

Status: code verified, 2 files readable, 3 matches

[34688] doi:10.1016/j.nicl.2023.103478 [paper, data]

Hypothalamic volume is associated with body mass index.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[34689] doi:10.1016/j.xpro.2023.102450 [paper]

Cell-surface biotinylation of GABA&lt;sub&gt;A&lt;/sub&gt; receptors in mouse hippocampal slices after sevoflurane anesthesia.

Journal: STAR protocols

Status: code on request

[34690] doi:10.1021/acs.jmedchem.3c00775 [paper, repository]

<i>In Silico</i> Discovery and Subsequent Characterization of Potent 4R-Tauopathy Positron Emission Tomography Radiotracers.

Journal: Journal of medicinal chemistry

Authors' code: abazabaaa/molbeam_fp (MIT)

Status: code verified, 12 files readable, 2 matches

[34691] doi:10.1038/s41467-023-40142-y [paper, repository]

Glial Draper signaling triggers cross-neuron plasticity in bystander neurons after neuronal cell death in Drosophila.

Journal: Nature communications

Authors' code: sihaohuanguc/larva_trajectory_process (GPL-2.0), Zenodo 8011787 (other-open)

Status: code verified, 6 files readable, 1 match

[34692] doi:10.1063/5.0155037 [paper, data]

Magnetic self-assembly of 3D multicellular microscaffolds: A biomimetic brain tumor-on-a-chip for drug delivery and selectivity testing.

Journal: APL bioengineering

Status: data only, 1 dataset cited

[34693] doi:10.1073/pnas.2222095120 [paper, data]

Neuronal diversity of neuropeptide signaling, including galanin, in the mouse locus coeruleus.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[34694] doi:10.1073/pnas.2306399120 [paper, data]

Disulfiram blocks inflammatory TLR4 signaling by targeting MD-2.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[34695] doi:10.1111/psyp.14399 [paper, repository]

The neural correlates of continuous feedback processing.

Journal: Psychophysiology

Authors' code: CCNHuntLab/continuousfeedback (MIT)

Status: code verified, 25 files readable, 9 matches

[34696] doi:10.1172/jci.insight.165937 [paper, repository]

Multimodal single-cell analysis of nonrandom heteroplasmy distribution in human retinal mitochondrial disease.

Journal: JCI insight

Authors' code: nkmullin/melas_jci_insight_2023 (MIT)

Status: code verified, 20 files readable, 13 matches

[34697] doi:10.1172/jci.insight.166306 [paper, data]

Age-related decline in hippocampal tyrosine phosphatase PTPRO is a mechanistic factor in chemotherapy-related cognitive impairment.

Journal: JCI insight

Status: data only, 1 dataset cited

[34698] doi:10.1371/journal.pbio.3002203 [paper, repository]

Social network position is a major predictor of ant behavior, microbiota composition, and brain gene expression.

Journal: PLoS biology

Authors' code: Zenodo 8043085 (other-open), formicidae-tracker (no license), mo-katy/socialenvironment_camponotus (no license)

Status: code verified, 24 files readable, 5 matches

[34699] doi:10.1371/journal.pcbi.1011249 [paper, repository]

DeepGenePrior: A deep learning model for prioritizing genes affected by copy number variants.

Journal: PLoS computational biology

Authors' code: git.dml.ir/z_rahaie/dgp (no license)

Status: code found, still to be checked

[34700] doi:10.1523/eneuro.0047-23.2023 [paper]

Multimodal Temporal Pattern Discrimination Is Encoded in Visual Cortical Dynamics.

Journal: eNeuro

Status: code on request

[34701] doi:10.1523/eneuro.0167-23.2023 [paper, repository]

A Novel Approach to Study Coherent γ-Band Oscillations in Hippocampal Brain Sections.

Journal: eNeuro

Authors' code: Jcrd25/NeuroMEACode (no license)

Status: code verified, 372 files readable, 1 match

[34702] doi:10.1523/eneuro.0188-23.2023 [paper, repository]

Dual Receptive Fields Underlying Target and Wide-Field Motion Sensitivity in Looming-Sensitive Descending Neurons.

Journal: eNeuro

Authors' code: Zenodo 7227236 (MIT)

Status: code verified, 20 files readable, 4 matches

[34703] doi:10.1523/eneuro.0435-22.2023 [paper, repository]

Adaptation Shapes Local Cortical Reactivity: From Bifurcation Diagram and Simulations to Human Physiological and Pathological Responses.

Journal: eNeuro

Authors' code: annacatt/Adaptation_and_cortical_responses (MIT), mauriziomattia/Perseus (CC-BY-SA-4.0)

Status: code verified, 47 files readable, 13 matches

[34704] doi:10.3389/fninf.2023.1216443 [paper, data]

NeuroBridge ontology: computable provenance metadata to give the long tail of neuroimaging data a FAIR chance for secondary use.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[34705] doi:10.3390/cells12141922 [paper, data]

Epigenetic Age Acceleration in Frontotemporal Lobar Degeneration: A Comprehensive Analysis in the Blood and Brain.

Journal: Cells

Status: data only, 2 datasets cited

[34706] doi:10.7554/elife.87169 [paper, repository]

Uncovering circuit mechanisms of current sinks and sources with biophysical simulations of primary visual cortex.

Journal: eLife

Authors' code: atleer/CINPLA_Allen_V1_analysis (MIT)

Status: code verified, 16 files readable, 6 matches

Sunday, 23 July 2023 (3 papers)

[34707] doi:10.1002/ece3.10323 [paper, data]

Individual variation in preference behavior in sailfin fish refines the neurotranscriptomic pathway for mate preference.

Journal: Ecology and evolution

Status: data only, 1 dataset cited

[34708] doi:10.1021/acschemneuro.3c00192 [paper, data]

The Double-Layered Structure of Amyloid-β Assemblage on GM1-Containing Membranes Catalytically Promotes Fibrillization.

Journal: ACS chemical neuroscience

Status: data only, 1 dataset cited

[34709] doi:10.1186/s12974-023-02856-0 [paper, data]

Emerging role of non-coding RNAs in neuroinflammation mediated by microglia and astrocytes.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

Saturday, 22 July 2023 (7 papers)

[34710] doi:10.1002/cjs.11790 [paper, repository]

Oscillating neural circuits: Phase, amplitude, and the complex normal distribution.

Journal: The Canadian journal of statistics = Revue canadienne de statistique

Authors' code: urbkn7/latent_cn (GPL-3.0)

Status: code verified, 4 files readable

[34711] doi:10.1007/s00360-023-01504-6 [paper, repository]

Noradrenergic tone is not required for neuronal activity-induced rebound sleep in zebrafish.

Journal: Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology

Authors' code: Zenodo 7644073 (other-open), ACCLAB/DABEST-Matlab (BSD-3-Clause), jrihel/sleep-analysis (CC0-1.0)

Status: code verified, 59 files readable

[34712] doi:10.1016/j.isci.2023.107454 [paper, repository]

Early classification of Alzheimer's disease phenotype based on hippocampal electrophysiology in the TgF344-AD rat model.

Journal: iScience

Authors' code: cortex-lab/phy (BSD-3-Clause), Research-lab-KUMS/AD-project (MIT)

Status: code verified, 182 files readable, 3 matches

[34713] doi:10.1016/j.isci.2023.107458 [paper]

Myo1d promotes alpha-synuclein transfer from brain microvascular endothelial cells to pericytes through tunneling nanotubes.

Journal: iScience

Status: code on request

[34714] doi:10.1016/j.jcmgh.2023.07.008 [paper]

Deciphering Brain Metastasis Stem Cell Properties From Colorectal Cancer Highlights Specific Stemness Signature and Shared Molecular Features.

Journal: Cellular and molecular gastroenterology and hepatology

Status: data only

[34715] doi:10.1016/j.nicl.2023.103480 [paper, data]

Brain health imaging markers, post-stroke aphasia and Cognition: A scoping review.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[34716] doi:10.3390/brainsci13071113 [paper, data]

The Role of the Dorsolateral Prefrontal Cortex in the Production and Comprehension of Phonologically and Semantically Related Words.

Journal: Brain sciences

Status: data only, 1 dataset cited

Friday, 21 July 2023 (25 papers, 4 on this page)

[34717] doi:10.1002/brb3.3173 [paper, data]

Depression diagnosis based on electroencephalography power ratios.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[34718] doi:10.1007/s00213-023-06426-3 [paper, repository]

Facial mimicry is not modulated by dopamine D2/3 and opioid receptor antagonism.

Journal: Psychopharmacology

Authors' code: OSF uht37 (no license)

Status: code verified, 9 files readable, 5 matches

[34719] doi:10.1007/s10548-023-00989-2 [paper, repository]

Timing of Allocentric and Egocentric Spatial Processing in Human Intracranial EEG.

Journal: Brain topography

Authors' code: kamilvlcek/ieeg_scripts (GPL-3.0)

Status: code verified, 172 files readable, 5 matches

[34720] doi:10.1016/j.celrep.2023.112845 [paper]

PCDH12 loss results in premature neuronal differentiation and impeded migration in a cortical organoid model.

Journal: Cell reports

Status: code on request

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