Every paper, by date: page 199

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 199 of 200: 1 June 2022 to 1 May 2022.

Wednesday, 1 June 2022 (86 papers, 78 on this page)

[44353] doi:10.1016/j.celrep.2022.110961 [paper, repository]

Absence of microglia promotes diverse pathologies and early lethality in Alzheimer's disease mice.

Journal: Cell reports

Authors' code: Zenodo 6565145 (other-open), swaruplabUCI/FIRE-mouse-2021-paper (no license), smorabit/5xfire_2021 (no license)

Status: code verified, 65 files readable, 16 matches

[44354] doi:10.1016/j.celrep.2022.110962 [paper, repository]

Genetic encoding of an esophageal motor circuit.

Journal: Cell reports

Authors' code: Zenodo 6564316 (CC-BY-4.0)

Status: code verified, 1 file readable

[44355] doi:10.1016/j.celrep.2022.110992 [paper, repository]

Post-transcriptional regulation of transcription factor codes in immature neurons drives neuronal diversity.

Journal: Cell reports

Authors' code: Zenodo 6592760 (other-open)

Status: code verified, 2 files readable

[44356] doi:10.1016/j.dib.2022.108338 [paper, data]

Data and experimental setup for a comprehensive study of ketamine's effect on neuronal plasticity following social isolation rearing in male and female rats.

Journal: Data in brief

Status: data only, 3 datasets cited

[44357] doi:10.1016/s2666-7568(22)00117-9 [paper, data]

Cardiometabolic multimorbidity, genetic risk, and dementia: a prospective cohort study.

Journal: The lancet. Healthy longevity

Status: data only, 2 datasets cited

[44358] doi:10.1038/s41392-022-00989-x [paper, data]

BOD1 regulates the cerebellar IV/V lobe-fastigial nucleus circuit associated with motor coordination.

Journal: Signal transduction and targeted therapy

Status: data only, 1 dataset cited

[44359] doi:10.1038/s41467-022-30214-w [paper, repository]

A calcium-based plasticity model for predicting long-term potentiation and depression in the neocortex.

Journal: Nature communications

Authors' code: Zenodo 5654788 (CC-BY-4.0), BlueBrain/EModelRunner (Apache-2.0)

Status: code verified, 198 files readable, 8 matches

[44360] doi:10.1038/s41467-022-30777-8 [paper, repository]

Robust derivation of transplantable dopamine neurons from human pluripotent stem cells by timed retinoic acid delivery.

Journal: Nature communications

Authors' code: Zenodo 6367837 (CC-BY-4.0)

Status: code verified, 2 files readable

[44361] doi:10.1038/s41586-022-04760-8 [paper, data]

Molecularly defined circuits for cardiovascular and cardiopulmonary control.

Journal: Nature

Status: data only, 1 dataset cited

[44362] doi:10.1038/s41598-022-12646-y [paper, data]

Brain tumor image generation using an aggregation of GAN models with style transfer.

Journal: Scientific reports

Status: data only, 1 dataset cited

[44363] doi:10.1038/s41598-022-13021-7 [paper, data]

Dietary emulsifier consumption alters gene expression in the amygdala and paraventricular nucleus of the hypothalamus in mice.

Journal: Scientific reports

Status: data only, 1 dataset cited

[44364] doi:10.1038/s41598-022-13071-x [paper, repository]

Human cerebral spheroids undergo 4-aminopyridine-induced, activity associated changes in cellular composition and microrna expression.

Journal: Scientific reports

Authors' code: Thomas-Parmentier/calcium-imaging-cultured-cells (MIT)

Status: code verified, 2 files readable, 1 match

[44365] doi:10.1038/s41598-022-13127-y [paper, data]

Lifelong changes of neurotransmitter receptor expression and debilitation of hippocampal synaptic plasticity following early postnatal blindness.

Journal: Scientific reports

Status: data only, 1 dataset cited

[44366] doi:10.1038/s41598-022-13181-6 [paper, data]

The impact of obesity-related raised intracranial pressure in rodents.

Journal: Scientific reports

Status: data only, 4 datasets cited

[44367] doi:10.1073/pnas.2112385119 [paper, data]

Discrete roles of Ir76b ionotropic coreceptor impact olfaction, blood feeding, and mating in the malaria vector mosquito <i>Anopheles coluzzii</i>.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 5 datasets cited

[44368] doi:10.1073/pnas.2117346119 [paper, repository]

Ultrafast two-photon fluorescence imaging of cerebral blood circulation in the mouse brain in vivo.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: JiLabUCBerkeley/FACED2PFM-vessel (no license)

Status: code verified, 46 files readable, 6 matches

[44369] doi:10.1073/pnas.2203965119 [paper, data]

The nonclassical MHC class I Qa-1 expressed in layer 6 neurons regulates activity-dependent plasticity via microglial CD94/NKG2 in the cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[44370] doi:10.1073/pnas.2204433119 [paper, repository]

Multiscale neural signatures of major depressive, anxiety, and stress-related disorders.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: peterzhukovsky/ukb_transdiagnostic (GPL-3.0)

Status: code verified, 21 files readable, 4 matches

[44371] doi:10.1080/21655979.2022.2084494 [paper, data]

Methyltransferase-like 3 silenced inhibited the ferroptosis development via regulating the glutathione peroxidase 4 levels in the intracerebral hemorrhage progression.

Journal: Bioengineered

Status: data only, 1 dataset cited

[44372] doi:10.1080/21655979.2022.2090608 [paper, data]

IL-17A deletion reduces sevoflurane-induced neurocognitive impairment in neonatal mice by inhibiting NF-κB signaling pathway.

Journal: Bioengineered

Status: data only, 1 dataset cited

[44373] doi:10.1080/21655979.2022.2108266 [paper, data]

Effects of ischemic postconditioning and long non-coding RNAs in ischemic stroke.

Journal: Bioengineered

Status: data only, 4 datasets cited

[44374] doi:10.1089/hum.2022.037 [paper, data]

Cell-Selective Adeno-Associated Virus-Mediated <i>SCN1A</i> Gene Regulation Therapy Rescues Mortality and Seizure Phenotypes in a Dravet Syndrome Mouse Model and Is Well Tolerated in Nonhuman Primates.

Journal: Human gene therapy

Status: data only, 1 dataset cited

[44375] doi:10.1093/brain/awab362 [paper, data]

A brain atlas of axonal and synaptic delays based on modelling of cortico-cortical evoked potentials.

Journal: Brain : a journal of neurology

Status: data only, 8 datasets cited

[44376] doi:10.1093/brain/awab432 [paper, repository]

Gene-mapping study of extremes of cerebral small vessel disease reveals TRIM47 as a strong candidate.

Journal: Brain : a journal of neurology

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable

[44377] doi:10.1093/brain/awab440 [paper, repository]

Differentially targeted seeding reveals unique pathological alpha-synuclein propagation patterns.

Journal: Brain : a journal of neurology

Authors' code: srahayel (no license)

Status: code verified

[44378] doi:10.1093/brain/awab466 [paper]

A daily temperature rhythm in the human brain predicts survival after brain injury.

Journal: Brain : a journal of neurology

Status: code on request

[44379] doi:10.1093/brain/awab479 [paper, repository]

Junctional instability in neuroepithelium and network hyperexcitability in a focal cortical dysplasia human model.

Journal: Brain : a journal of neurology

Authors' code: fpuppo/ECRtools (Apache-2.0)

Status: code verified, 51 files readable, 2 matches

[44380] doi:10.1093/brain/awac126 [paper, repository]

Post-acute blood biomarkers and disease progression in traumatic brain injury.

Journal: Brain : a journal of neurology

Authors' code: biomedia-mira/brain-age-cnn (no license)

Status: empty repository, 1 file readable

[44381] doi:10.1093/cercor/bhab370 [paper]

Gray Matter Volume Variability in Young Healthy Adults: Influence of Gender Difference and Brain-Derived Neurotrophic Factor Genotype.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[44382] doi:10.1093/cercor/bhab384 [paper, repository]

Scaling Principles of White Matter Connectivity in the Human and Nonhuman Primate Brain.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: ardesch/brainscaling (GPL-3.0)

Status: code verified, 33 files readable, 10 matches

[44383] doi:10.1093/cercor/bhab385 [paper, repository]

EEG Frequency Tagging Reveals the Integration of Form and Motion Cues into the Perception of Group Movement.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF bs8n7 (no license)

Status: code verified, 4 files readable

[44384] doi:10.1093/eurheartj/ehac020 [paper, data]

Silent brain infarcts impact on cognitive function in atrial fibrillation.

Journal: European heart journal

Status: data only, 1 dataset cited

[44385] doi:10.1093/ijnp/pyac009 [paper, data]

Functional Neuroimaging Correlates of Placebo Response in Patients With Depressive or Anxiety Disorders: A Systematic Review.

Journal: The international journal of neuropsychopharmacology

Status: data only, 1 dataset cited

[44386] doi:10.1093/ijnp/pyac013 [paper, repository]

Auricular Transcutaneous Vagus Nerve Stimulation Diminishes Alpha-Band-Related Inhibitory Gating Processes During Conflict Monitoring in Frontal Cortices.

Journal: The international journal of neuropsychopharmacology

Authors' code: OSF fn7br (no license)

Status: code verified, 11 files readable, 2 matches

[44387] doi:10.1093/nar/gkac084 [paper, repository]

CellDART: cell type inference by domain adaptation of single-cell and spatial transcriptomic data.

Journal: Nucleic acids research

Authors' code: mexchy1000/CellDART (no license)

Status: code verified, 12 files readable, 11 matches

[44388] doi:10.1093/nar/gkac337 [paper, data]

Intra-axonal translation of Khsrp mRNA slows axon regeneration by destabilizing localized mRNAs.

Journal: Nucleic acids research

Status: data only, 3 datasets cited

[44389] doi:10.1093/neuonc/noab241 [paper, data]

Human embryonic stem cell-derived neural crest model unveils CD55 as a cancer stem cell regulator for therapeutic targeting in MYCN-amplified neuroblastoma.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[44390] doi:10.1093/psyrad/kkac006 [paper, data]

Linked brain connectivity patterns with psychopathological and cognitive phenotypes in drug-naïve first-episode schizophrenia.

Journal: Psychoradiology

Status: data only, 1 dataset cited

[44391] doi:10.1093/scan/nsab118 [paper, repository]

Sex differences in the behavioral inhibition system and ventromedial prefrontal cortex connectivity.

Journal: Social cognitive and affective neuroscience

Authors' code: canlab/MediationToolbox (no license)

Status: code verified, 202 files readable, 2 matches

[44392] doi:10.1093/scan/nsab123 [paper, data]

EEG alpha and theta signatures of socially and non-socially cued working memory in virtual reality.

Journal: Social cognitive and affective neuroscience

Status: data only, 2 datasets cited

[44393] doi:10.1093/scan/nsab126 [paper, repository]

Neural correlates of successful costly punishment in the Ultimatum game on a trial-by-trial basis.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 8cj69 (no license)

Status: code verified, 2 files readable, 9 matches

[44394] doi:10.1093/scan/nsab136 [paper, repository]

Causal role of the right temporoparietal junction in selfishness depends on the social partner.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 5ky3x (no license)

Status: code verified, 3 files readable

[44395] doi:10.1093/schbul/sbac047 [paper, repository]

Graph Convolutional Networks Reveal Network-Level Functional Dysconnectivity in Schizophrenia.

Journal: Schizophrenia bulletin

Authors' code: alien18/GCN_SCZ_Classification (MIT)

Status: code verified, 11 files readable, 1 match

[44396] doi:10.1096/fj.202200079r [paper, data]

The PLAUR signaling promotes chronic pruritus.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[44397] doi:10.1111/cogs.13147 [paper, repository]

A Cross-Modal and Cross-lingual Study of Iconicity in Language: Insights From Deep Learning.

Journal: Cognitive science

Authors' code: facebookresearch/MUSE (CC-BY-NC-4.0), Andrea-de-Varda/iconicity-deep-learning (no license)

Status: code verified, 23 files readable, 3 matches

[44398] doi:10.1126/sciadv.abg5244 [paper, repository]

Internally generated population activity in cortical networks hinders information transmission.

Journal: Science advances

Authors' code: Zenodo 5874682 (CC-BY-4.0), hcc11/FI_SpatialNet (no license)

Status: code verified, 48 files readable, 4 matches

[44399] doi:10.1128/msystems.01399-21 [paper, data]

Sepsis-Induced Gut Dysbiosis Mediates the Susceptibility to Sepsis-Associated Encephalopathy in Mice.

Journal: mSystems

Status: data only, 1 dataset cited

[44400] doi:10.1162/netn_a_00218 [paper, repository]

Structure supports function: Informing directed and dynamic functional connectivity with anatomical priors.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: PscDavid/dynet_toolbox (BSD-3-Clause), joanrue/pydynet (BSD-3-Clause)

Status: code verified, 65 files readable, 4 matches

[44401] doi:10.1162/netn_a_00222 [paper, repository]

More than the sum of its parts: Merging network psychometrics and network neuroscience with application in autism.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: fcp-indi.github.io/docs (no license)

Status: dead link

[44402] doi:10.1162/netn_a_00228 [paper, repository]

An application of neighbourhoods in digraphs to the classification of binary dynamics.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: jlazovskis/neurotop-nest (GPL-3.0)

Status: code verified, 31 files readable

[44403] doi:10.1162/netn_a_00229 [paper, repository]

NeuMapper: A scalable computational framework for multiscale exploration of the brain's dynamical organization.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: braindynamicslab/neumapper (BSD-3-Clause)

Status: code verified, 22 files readable, 3 matches

[44404] doi:10.1162/netn_a_00232 [paper, repository]

Normalization effect of levodopa on hierarchical brain function in Parkinson's disease.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 3 matches

[44405] doi:10.1162/netn_a_00234 [paper, repository]

Latent functional connectivity underlying multiple brain states.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: ito-takuya/fmriNuisanceRegression (MIT)

Status: code verified, 3 files readable, 1 match

[44406] doi:10.1167/jov.22.7.3 [paper, repository]

Could simplified stimuli change how the brain performs visual search tasks? A deep neural network study.

Journal: Journal of vision

Authors' code: dicarlolab/CORnet (GPL-3.0), NickleDave/visual-search-nets (BSD-3-Clause), NickleDave/searchstims (BSD-3-Clause), NickleDave/Nicholson-Prinz-JOV-DNNs-bio-vis (BSD-3-Clause), NickleDave/NIH-Chest-X-Rays-Multi-Label-Image-Classification-In-Pytorch (no license)

Status: code verified, 199 files readable, 10 matches

[44407] doi:10.1167/jov.22.7.6 [paper, repository]

Identifying specular highlights: Insights from deep learning.

Journal: Journal of vision

Authors' code: Zenodo 6543442 (no license)

Status: dead link

[44408] doi:10.1172/jci149371 [paper, data]

Caffeine intake exerts dual genome-wide effects on hippocampal metabolism and learning-dependent transcription.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[44409] doi:10.1172/jci154317 [paper, data]

The neuronal tyrosine kinase receptor ligand ALKAL2 mediates persistent pain.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[44410] doi:10.1172/jci154619 [paper, data]

Transplanted human cones incorporate into the retina and function in a murine cone degeneration model.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[44411] doi:10.1186/s12883-022-02697-z [paper, repository]

Birth prevalence of neural tube defects in eastern Africa: a systematic review and meta-analysis.

Journal: BMC neurology

Authors' code: ssentongojeddy/Neural-Tube-Defects-in-Eastern-Africa (no license)

Status: code verified, 2 files readable

[44412] doi:10.1186/s12887-022-03348-5 [paper, data]

Changes in a sensorimotor network, occipital network, and psychomotor speed within three months after focal surgical injury in pediatric patients with intracranial space-occupying lesions.

Journal: BMC pediatrics

Status: code on request, 1 dataset cited

[44413] doi:10.1186/s12987-022-00342-y [paper, data]

Application of blood brain barrier models in pre-clinical assessment of glioblastoma-targeting CAR-T based immunotherapies.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[44414] doi:10.1186/s13229-022-00502-9 [paper, data]

Autism-associated protein POGZ controls ESCs and ESC neural induction by association with esBAF.

Journal: Molecular autism

Status: data only, 9 datasets cited

[44415] doi:10.14336/ad.2021.1029 [paper, data]

Blocking C3d⁺/GFAP⁺ A1 Astrocyte Conversion with Semaglutide Attenuates Blood-Brain Barrier Disruption in Mice after Ischemic Stroke.

Journal: Aging and disease

Status: data only, 1 dataset cited

[44416] doi:10.14336/ad.2021.1115 [paper, data]

Neuroprotective Effects of Celastrol in Neurodegenerative Diseases-Unscramble Its Major Mechanisms of Action and Targets.

Journal: Aging and disease

Status: data only, 1 dataset cited

[44417] doi:10.1590/0004-282x-anp-2021-0136 [paper, data]

Measuring optic nerve sheath diameter using ultrasonography in patients with idiopathic intracranial hypertension.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 2 datasets cited

[44418] doi:10.1590/0004-282x-anp-2021-0225 [paper, data]

Diagnosis of Guillain-Barré syndrome and use of Brighton criteria in Peruvian hospitals.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[44419] doi:10.3201/eid2806.212344 [paper, data]

Angiostrongylus cantonensis Nematode Invasion Pathway, Mallorca, Spain.

Journal: Emerging infectious diseases

Status: data only, 12 datasets cited

[44420] doi:10.3389/fams.2022.822782 [paper, repository]

A Scalar Poincaré Map for Anti-phase Bursting in Coupled Inhibitory Neurons With Synaptic Depression.

Journal: Frontiers in applied mathematics and statistics

Authors' code: markolenik/poincare-map-paper (no license), markolenik/PyXPP (GPL-3.0)

Status: code verified, 26 files readable, 2 matches

[44421] doi:10.3389/fendo.2022.891039 [paper, data]

Single-Cell Sequencing Analysis of the db/db Mouse Hippocampus Reveals Cell-Type-Specific Insights Into the Pathobiology of Diabetes-Associated Cognitive Dysfunction.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[44422] doi:10.3389/fmed.2022.896263 [paper]

Delayed Impact of 2-Oxoadipate Dehydrogenase Inhibition on the Rat Brain Metabolism Is Linked to Protein Glutarylation.

Journal: Frontiers in medicine

Status: data only

[44423] doi:10.3389/fnins.2022.915349 [paper, data]

Listening Over Time: Single-Trial Tonic and Phasic Oscillatory Alpha-and Theta-Band Indicators of Listening-Related Fatigue.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[44424] doi:10.3389/fonc.2022.873268 [paper, repository]

A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor.

Journal: Frontiers in oncology

Authors' code: alinawazT/Brain-Tumor-Segmentation (no license)

Status: code verified, 3 files readable, 2 matches

[44425] doi:10.3389/fphar.2022.902254 [paper]

Low-Dose Anti-HIV Drug Efavirenz Mitigates Retinal Vascular Lesions in a Mouse Model of Alzheimer's Disease.

Journal: Frontiers in pharmacology

Status: data only

[44426] doi:10.3390/brainsci12060727 [paper, data]

Frequency-Specific Analysis of the Dynamic Reconfiguration of the Brain in Patients with Schizophrenia.

Journal: Brain sciences

Status: data only, 1 dataset cited

[44427] doi:10.3390/brainsci12060728 [paper, repository]

Spike-Dependent Dynamic Partitioning of the Locus Coeruleus Network through Noradrenergic Volume Release in a Simulation of the Nucleus Core.

Journal: Brain sciences

Authors' code: teamprigge (no license)

Status: code verified

[44428] doi:10.5607/en22011 [paper, repository]

Simultaneous Cellular Imaging, Electrical Recording and Stimulation of Hippocampal Activity in Freely Behaving Mice.

Journal: Experimental neurobiology

Authors' code: kloostermannerflab/combined-microdrive-and-miniscope (no license)

Status: code verified, 3 files readable, 1 match

[44429] doi:10.7554/elife.70661 [paper, repository]

Minian, an open-source miniscope analysis pipeline.

Journal: eLife

Authors' code: denisecailab/minian (GPL-3.0)

Status: code verified, 41 files readable, 21 matches

[44430] doi:10.7554/elife.74971 [paper, repository]

A neural mechanism for detecting object motion during self-motion.

Journal: eLife

Authors' code: hkim09/MoogDots_2013 (MIT)

Status: code verified, 24 files readable, 5 matches

Saturday, 7 May 2022 (4 papers)

[44431] doi:10.1016/j.isci.2022.104371 [paper]

Antibiotics increase aggression behavior and aggression-related pheromones and receptors in <i>Drosophila melanogaster</i>.

Journal: iScience

Status: code on request

[44432] doi:10.1016/j.neuroimage.2022.119241 [paper, repository]

The neural correlates of inhibitory control in 10-month-old infants: A functional near-infrared spectroscopy study.

Journal: NeuroImage

Authors' code: OSF mpt5g (no license), DOT-HUB (no license), OSF mv47n (no license), figshare 13258814 (CC-BY-4.0), nitrc.org/projects/homer2 (no license), liamhywelcj/ReconstructionTenMonthCohortData (no license)

Status: code verified, 25 files readable, 3 matches

[44433] doi:10.3390/diagnostics12051165 [paper]

Biomarker Candidates for Alzheimer's Disease Unraveled through In Silico Differential Gene Expression Analysis.

Journal: Diagnostics (Basel, Switzerland)

Status: data only

[44434] doi:10.3390/s22093557 [paper]

A Holistic Strategy for Classification of Sleep Stages with EEG.

Journal: Sensors (Basel, Switzerland)

Status: code on request

Friday, 6 May 2022 (37 papers)

[44435] doi:10.1002/epi4.12596 [paper, repository]

Scalp HFO rates are higher for larger lesions.

Journal: Epilepsia open

Authors' code: ZurichNCH/Automatic-High-Frequency-Oscillation-Detector (Apache-2.0)

Status: code verified, 21 files readable, 1 match

[44436] doi:10.1007/s00401-022-02428-1 [paper, repository]

AR cooperates with SMAD4 to maintain skeletal muscle homeostasis.

Journal: Acta neuropathologica

Authors' code: FelixKrueger/TrimGalore (GPL-3.0)

Status: code verified, 31 files readable, 1 match

[44437] doi:10.1007/s00429-022-02496-9 [paper, repository]

Meditation-induced effects on whole-brain structural and effective connectivity.

Journal: Brain structure & function

Authors' code: MatthieuGilson/WBLEC_toolbox.Fig (no license), MatthieuGilson/WBLEC_toolbox (GPL-3.0)

Status: code verified, 6 files readable, 5 matches

[44438] doi:10.1016/j.isci.2022.104364 [paper]

Altered synaptic plasticity of the longitudinal dentate gyrus network in noise-induced anxiety.

Journal: iScience

Status: code on request

[44439] doi:10.1016/j.isci.2022.104368 [paper, data]

Aβ-induced synaptic impairments require CaMKII activity that is stimulated by indirect signaling events.

Journal: iScience

Status: code on request, 1 dataset cited

[44440] doi:10.1016/j.neuron.2022.04.008 [paper, repository]

Walking strides direct rapid and flexible recruitment of visual circuits for course control in Drosophila.

Journal: Neuron

Authors' code: jbohnslav/deepethogram (other), Zenodo 6365304 (CC-BY-4.0)

Status: code verified, 99 files readable, 15 matches

[44441] doi:10.1016/j.pneurobio.2022.102285 [paper, repository]

Alpha oscillations reflect suppression of distractors with increased perceptual load.

Journal: Progress in neurobiology

Authors' code: tgutteling/Perceptual_Load_Experiment (no license)

Status: code verified, 25 files readable, 8 matches

[44442] doi:10.1038/s41398-022-01934-w [paper, repository]

A serotonergic biobehavioral signature differentiates cocaine use disorder participants administered mirtazapine.

Journal: Translational psychiatry

Authors' code: HaukeHillebrandt/SPM_connectome (no license)

Status: code verified, 24 files readable

[44443] doi:10.1038/s41398-022-01939-5 [paper, repository]

Magnetization transfer imaging alterations and its diagnostic value in antipsychotic-naïve first-episode schizophrenia.

Journal: Translational psychiatry

Authors' code: QKmeans0902/MTR_classification (MIT)

Status: code verified, 3 files readable, 1 match

[44444] doi:10.1038/s41398-022-01956-4 [paper, repository]

Bayesian causal network modeling suggests adolescent cannabis use accelerates prefrontal cortical thinning.

Journal: Translational psychiatry

Authors' code: owensmax/Cannabis_Bayesian_Networks (no license)

Status: code verified, 2 files readable, 4 matches

[44445] doi:10.1038/s41398-022-01959-1 [paper]

Multi-omics signatures of alcohol use disorder in the dorsal and ventral striatum.

Journal: Translational psychiatry

Status: code on request

[44446] doi:10.1038/s41467-022-30292-w [paper, data]

Cryo-EM structures of thylakoid-located voltage-dependent chloride channel VCCN1.

Journal: Nature communications

Status: data only, 1 dataset cited

[44447] doi:10.1038/s41593-022-01067-9 [paper]

Neurotransmitter phenotype switching by spinal excitatory interneurons regulates locomotor recovery after spinal cord injury.

Journal: Nature neuroscience

Status: code on request

[44448] doi:10.1038/s41598-022-11579-w [paper, data]

The effects of dietary proline, β-alanine, and γ-aminobutyric acid (GABA) on the nest construction behavior in the Oriental hornet (Vespa orientalis).

Journal: Scientific reports

Status: data only, 1 dataset cited

[44449] doi:10.1038/s42003-022-03378-w [paper, repository]

The interaction between endogenous GABA, functional connectivity, and behavioral flexibility is critically altered with advanced age.

Journal: Communications biology

Authors' code: figshare 14256314 (CC-BY-4.0)

Status: code verified, 6 files readable, 10 matches

[44450] doi:10.1101/2022.05.06.490895 [paper, data]

Heart Rate Variability Covaries with Amygdala Functional Connectivity During Voluntary Emotion Regulation

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[44451] doi:10.1113/jp282609 [paper, repository]

Investigation of neural and biomechanical impairments leading to pathological toe and heel gaits using neuromusculoskeletal modelling.

Journal: The Journal of physiology

Authors' code: AliceBrue/pathological_gait (no license)

Status: code verified, 13 files readable, 6 matches

[44452] doi:10.1155/2022/3522492 [paper, data]

circHtra1/miR-3960/GRB10 Axis Promotes Neuronal Loss and Immune Deficiency in Traumatic Brain Injury.

Journal: Oxidative medicine and cellular longevity

Status: data only, 3 datasets cited

[44453] doi:10.1186/s12859-022-04692-0 [paper, repository]

CircMiMi: a stand-alone software for constructing circular RNA-microRNA-mRNA interactions across species.

Journal: BMC bioinformatics

Authors' code: TreesLab/CircMiMi (MIT)

Status: code verified, 41 files readable, 9 matches

[44454] doi:10.1186/s12868-022-00712-0 [paper, data]

Auditory steady state responses elicited by silent gaps embedded within a broadband noise.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[44455] doi:10.1371/journal.pbio.3001540 [paper, data]

The human insula processes both modality-independent and pain-selective learning signals.

Journal: PLoS biology

Status: data only, 1 dataset cited

[44456] doi:10.1371/journal.pone.0267916 [paper]

Thalamic activations in rat brain by fMRI during tactile (forepaw, whisker) and non-tactile (visual, olfactory) sensory stimulations.

Journal: PloS one

Status: code on request

[44457] doi:10.3389/fimmu.2022.856254 [paper, data]

Annexin-A1 Tripeptide Attenuates Surgery-Induced Neuroinflammation and Memory Deficits Through Regulation the NLRP3 Inflammasome.

Journal: Frontiers in immunology

Status: data only, 6 datasets cited

[44458] doi:10.3389/fnagi.2022.889930 [paper, repository]

Handwriting Declines With Human Aging: A Machine Learning Study.

Journal: Frontiers in aging neuroscience

Authors' code: mindee/doctr (Apache-2.0)

Status: code verified, 270 files readable, 3 matches

[44459] doi:10.3389/fncir.2022.836930 [paper, data]

A Molecular Landscape of Mouse Hippocampal Neuromodulation.

Journal: Frontiers in neural circuits

Status: data only, 1 dataset cited

[44460] doi:10.3389/fncom.2022.769860 [paper, repository]

Cross-Frequency Slow Oscillation-Spindle Coupling in a Biophysically Realistic Thalamocortical Neural Mass Model.

Journal: Frontiers in computational neuroscience

Authors' code: jajcayn/thalamocortical_model_study (MIT)

Status: code verified, 17 files readable, 14 matches

[44461] doi:10.3389/fncom.2022.883660 [paper, data]

The Task Pre-Configuration Is Associated With Cognitive Performance Evidence From the Brain Synchrony.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[44462] doi:10.3389/fnhum.2022.855778 [paper, data]

Audience Interbrain Synchrony During Live Music Is Shaped by Both the Number of People Sharing Pleasure and the Strength of This Pleasure.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[44463] doi:10.3389/fnhum.2022.880304 [paper, data]

Improved Brain-Computer Interface Signal Recognition Algorithm Based on Few-Channel Motor Imagery.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[44464] doi:10.3389/fnmol.2022.874299 [paper, data]

Reactive Astrocytes Derived From Human Induced Pluripotent Stem Cells Suppress Oligodendrocyte Precursor Cell Differentiation.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[44465] doi:10.3389/fonc.2022.855167 [paper, data]

Cross-Talk Between Histone Methyltransferases and Demethylases Regulate REST Transcription During Neurogenesis.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[44466] doi:10.3389/fpsyt.2022.866051 [paper, data]

A Longitudinal Examination of Alcohol-Related Blackouts as a Predictor of Changes in Learning, Memory, and Executive Function in Adolescents.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[44467] doi:10.3390/cells11091565 [paper, data]

Tany-Seq: Integrated Analysis of the Mouse Tanycyte Transcriptome.

Journal: Cells

Status: data only, 1 dataset cited

[44468] doi:10.3390/ijms23095200 [paper, repository]

Overlap between Central and Peripheral Transcriptomes in Parkinson's Disease but Not Alzheimer's Disease.

Journal: International journal of molecular sciences

Authors' code: binfnstats/SRA-RNAseq (no license)

Status: empty repository, 1 file readable

[44469] doi:10.3390/jcm11092609 [paper, data]

Chronic Pain in Musculoskeletal Diseases: Do You Know Your Enemy?

Journal: Journal of clinical medicine

Status: data only, 3 datasets cited

[44470] doi:10.3390/molecules27092990 [paper, data]

ST2825, a Small Molecule Inhibitor of MyD88, Suppresses NF-κB Activation and the ROS/NLRP3/Cleaved Caspase-1 Signaling Pathway to Attenuate Lipopolysaccharide-Stimulated Neuroinflammation.

Journal: Molecules (Basel, Switzerland)

Status: data only, 2 datasets cited

[44471] doi:10.7554/elife.75688 [paper, repository]

Flexible utilization of spatial- and motor-based codes for the storage of visuo-spatial information.

Journal: eLife

Authors' code: mmhenderson/wm_flex (MIT)

Status: code verified, 72 files readable, 22 matches

Thursday, 5 May 2022 (21 papers)

[44472] doi:10.1016/j.stemcr.2022.04.003 [paper, data]

Differentiation of brain and retinal organoids from confluent cultures of pluripotent stem cells connected by nerve-like axonal projections of optic origin.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[44473] doi:10.1021/acsomega.2c01470 [paper, data]

Exploration of the Detailed Structure-Activity Relationships of Isatin and Their Isomers As Monoamine Oxidase Inhibitors.

Journal: ACS omega

Status: data only, 1 dataset cited

[44474] doi:10.1038/s41467-022-29687-6 [paper, data]

Multisensory correlation computations in the human brain identified by a time-resolved encoding model.

Journal: Nature communications

Status: data only, 2 datasets cited

[44475] doi:10.1038/s41467-022-30168-z [paper, data]

PICASSO allows ultra-multiplexed fluorescence imaging of spatially overlapping proteins without reference spectra measurements.

Journal: Nature communications

Status: data only, 1 dataset cited

[44476] doi:10.1038/s41587-022-01288-0 [paper, data]

DIALOGUE maps multicellular programs in tissue from single-cell or spatial transcriptomics data.

Journal: Nature biotechnology

Status: data only, 7 datasets cited

[44477] doi:10.1038/s41588-022-01057-4 [paper, data]

Genetic architecture of 11 major psychiatric disorders at biobehavioral, functional genomic and molecular genetic levels of analysis.

Journal: Nature genetics

Status: data only, 1 dataset cited

[44478] doi:10.1038/s41593-022-01061-1 [paper, repository]

Single-cell genomic profiling of human dopamine neurons identifies a population that selectively degenerates in Parkinson's disease.

Journal: Nature neuroscience

Authors' code: MacoskoLab/slideseq-tools (no license), bulik/ldsc (GPL-3.0), tkamath1/Kamathetal2022 (MIT)

Status: code verified, 85 files readable, 24 matches

[44479] doi:10.1038/s41598-022-11153-4 [paper, data]

Spatial maps and oscillations in the healthy hippocampus of Octodon degus, a natural model of sporadic Alzheimer's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[44480] doi:10.1038/s42003-022-03329-5 [paper, repository]

Normalized unitary synaptic signaling of the hippocampus and entorhinal cortex predicted by deep learning of experimental recordings.

Journal: Communications biology

Authors' code: k1moradi/SynapseModelingUtility (AGPL-3.0), k1moradi/MachineLearningSynapsePhysiology (GPL-3.0), Zenodo 6385650 (other-open), Zenodo 6385648 (other-open)

Status: code verified, 14 files readable, 11 matches

[44481] doi:10.1073/pnas.2115128119 [paper, data]

Two kinds of memory signals in neurons of the human hippocampus.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[44482] doi:10.1093/braincomms/fcac112 [paper, repository]

Neural alterations in opioid-exposed infants revealed by edge-centric brain functional networks.

Journal: Brain communications

Authors' code: Windywom/Classification-based-on-Edge-centric-FC (no license)

Status: code verified, 5 files readable, 4 matches

[44483] doi:10.1155/2022/8187009 [paper, data]

Attention-Based DSC-ConvLSTM for Multiclass Motor Imagery Classification.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[44484] doi:10.1155/2022/8279851 [paper]

Pomelo Peel Essential Oil Ameliorates Cerebral Ischemia-Reperfusion Injury through Regulating Redox Homeostasis in Rats and SH-SY5Y Cells.

Journal: Oxidative medicine and cellular longevity

Status: code on request

[44485] doi:10.1371/journal.pone.0266165 [paper, data]

The impact of musical training in symbolic and non-symbolic audiovisual judgements of magnitude.

Journal: PloS one

Status: data only, 1 dataset cited

[44486] doi:10.1530/eor-21-0121 [paper, data]

Congenital scoliosis: a narrative review and proposal of a treatment algorithm.

Journal: EFORT open reviews

Status: data only, 1 dataset cited

[44487] doi:10.2147/jir.s360743 [paper, data]

Characterization of Immune-Related Genes and Immune Infiltration Features in Epilepsy by Multi-Transcriptome Data.

Journal: Journal of inflammation research

Status: data only, 1 dataset cited

[44488] doi:10.3389/fgene.2022.868716 [paper, data]

Comprehensive Analysis of lncRNAs, miRNAs and mRNAs in Mouse Hippocampus With Hepatic Encephalopathy.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[44489] doi:10.3389/fonc.2022.885472 [paper, data]

Current Treatment Approaches and Global Consensus Guidelines for Brain Metastases in Melanoma.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[44490] doi:10.3390/cells11091545 [paper, data]

Hippocampal Excitatory Synaptic Transmission and Plasticity Are Differentially Altered during Postnatal Development by Loss of the X-Linked Intellectual Disability Protein Oligophrenin-1.

Journal: Cells

Status: data only, 1 dataset cited

[44491] doi:10.3390/diagnostics12051142 [paper, repository]

End-to-End Deep Learning Approach for Perfusion Data: A Proof-of-Concept Study to Classify Core Volume in Stroke CT.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: AndreasMittermeier/stroke-perfusion-CNN (Apache-2.0)

Status: code verified, 3 files readable

[44492] doi:10.7554/elife.74462 [paper, data]

Early detection of cerebrovascular pathology and protective antiviral immunity by MRI.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 4 May 2022 (23 papers)

[44493] doi:10.1002/brb3.2507 [paper]

Altered hippocampal volume and functional connectivity in patients with Cushing's disease.

Journal: Brain and behavior

Status: code on request

[44494] doi:10.1016/j.isci.2022.104343 [paper, repository]

A mathematical model of neuroimmune interactions in epileptogenesis for discovering treatment strategies.

Journal: iScience

Authors' code: Zenodo 6035834 (other-open)

Status: code verified, 55 files readable, 8 matches

[44495] doi:10.1021/acschembio.1c00920 [paper, repository]

DRUG-seq Provides Unbiased Biological Activity Readouts for Neuroscience Drug Discovery.

Journal: ACS chemical biology

Authors' code: Novartis/DRUG-seq (MIT)

Status: code verified, 4 files readable, 2 matches

[44496] doi:10.1038/s41398-022-01944-8 [paper]

Differential expression of gene co-expression networks related to the mTOR signaling pathway in bipolar disorder.

Journal: Translational psychiatry

Status: data only

[44497] doi:10.1038/s41420-022-01016-2 [paper, data]

Circ_0000811 acts as a miR-15b sponge and inhibits Prkar2a-mediated JAK2/STAT1 pathway to attenuate cerebral ischemic vertigo.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[44498] doi:10.1038/s41467-022-29748-w [paper, repository]

Genome and transcriptome mechanisms driving cephalopod evolution.

Journal: Nature communications

Authors' code: viemet/public (no license)

Status: code verified, 31 files readable

[44499] doi:10.1038/s41467-022-30069-1 [paper]

Transition from predictable to variable motor cortex and striatal ensemble patterning during behavioral exploration.

Journal: Nature communications

Status: code on request

[44500] doi:10.1038/s41586-022-04686-1 [paper, repository]

Gene regulation by gonadal hormone receptors underlies brain sex differences.

Journal: Nature

Authors' code: ENCODE-DCC/atac-seq-pipeline (MIT), gegenhu/estrogen_gene_reg (no license)

Status: code verified, 64 files readable, 11 matches

[44501] doi:10.1038/s41598-022-11204-w [paper, data]

A comprehensive atlas of Aggrecan, Versican, Neurocan and Phosphacan expression across time in wildtype retina and in retinal degeneration.

Journal: Scientific reports

Status: data only, 1 dataset cited

[44502] doi:10.1038/s42003-022-03352-6 [paper, repository]

Social synchronization of brain activity increases during eye-contact.

Journal: Communications biology

Authors' code: OSF y9cr2 (no license)

Status: code verified, 1 file readable

[44503] doi:10.1098/rsob.210387 [paper, data]

A novel methodological approach to simultaneously extract high-quality total RNA and proteins from cortical and trabecular bone.

Journal: Open biology

Status: data only, 1 dataset cited

[44504] doi:10.1126/sciadv.abm6081 [paper, data]

Phase coding of spatial representations in the human entorhinal cortex.

Journal: Science advances

Status: data only, 1 dataset cited

[44505] doi:10.1155/2022/7636705 [paper, data]

An Efficient Data Classification Decision Based on Multimodel Deep Learning.

Journal: Computational intelligence and neuroscience

Status: data only, 2 datasets cited

[44506] doi:10.1161/strokeaha.121.038099 [paper, data]

Determinants and Temporal Dynamics of Cerebral Small Vessel Disease: 14-Year Follow-Up.

Journal: Stroke

Status: data only, 2 datasets cited

[44507] doi:10.1186/s40168-022-01277-0 [paper, data]

Correction to: The microbiota-gut-brain axis participates in chronic cerebral hypoperfusion by disrupting the metabolism of short-chain fatty acids.

Journal: Microbiome

Status: data only, 1 dataset cited

[44508] doi:10.1371/journal.pcbi.1009531 [paper, repository]

Controlling astrocyte-mediated synaptic pruning signals for schizophrenia drug repurposing with deep graph networks.

Journal: PLoS computational biology

Authors' code: gravins/DGNs-for-schizophrenia (no license)

Status: code verified, 28 files readable, 12 matches

[44509] doi:10.1523/jneurosci.1889-21.2022 [paper, repository]

Sleep-Specific Processing of Auditory Stimuli Is Reflected by Alpha and Sigma Oscillations.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Wislowska/fSON_MEG_project (no license)

Status: code verified, 74 files readable, 4 matches

[44510] doi:10.3389/fgene.2022.686739 [paper, data]

Single-Cell Transcriptomics Uncovers Cellular Heterogeneity, Mechanisms, and Therapeutic Targets for Parkinson's Disease.

Journal: Frontiers in genetics

Status: data only, 11 datasets cited

[44511] doi:10.3389/fonc.2022.849447 [paper, repository]

Deep Learning Model for Classifying Metastatic Epidural Spinal Cord Compression on MRI.

Journal: Frontiers in oncology

Authors' code: tzutalin/labelImg (MIT), NUHS-NUS-SpineAI/SpineAI-Bilsky-Grading (no license)

Status: code verified, 49 files readable

[44512] doi:10.3390/cells11091537 [paper, data]

Signal Transduction Regulators in Axonal Regeneration.

Journal: Cells

Status: data only, 2 datasets cited

[44513] doi:10.7554/elife.75470 [paper, repository]

A discrete parasubthalamic nucleus subpopulation plays a critical role in appetite suppression.

Journal: eLife

Authors' code: MattCarter-WilliamsCollege/FiberPhotometryCode (CC0-1.0)

Status: code verified, 6 files readable

[44514] doi:10.7554/elife.76707 [paper, data]

Generation of vascularized brain organoids to study neurovascular interactions.

Journal: eLife

Status: data only, 7 datasets cited

[44515] doi:10.7554/elife.77470 [paper, repository]

Intrinsic excitability mechanisms of neuronal ensemble formation.

Journal: eLife

Authors' code: Zenodo 6653226 (CC-BY-ND-4.0)

Status: code verified, 67 files readable

Tuesday, 3 May 2022 (23 papers)

[44516] doi:10.1007/s40279-022-01689-w [paper, repository]

An Active Inference Account of Skilled Anticipation in Sport: Using Computational Models to Formalise Theory and Generate New Hypotheses.

Journal: Sports medicine (Auckland, N.Z.)

Authors' code: OSF 8bpkr (no license), OSF vuy8e (no license)

Status: code verified, 7 files readable, 2 matches

[44517] doi:10.1016/j.crmeth.2022.100208 [paper, repository]

Impact of optogenetic pulse design on CA3 learning and replay: A neural model.

Journal: Cell reports methods

Authors' code: Zenodo 6415338 (other-open), yesterdaysam/computationalwaveformmemory (MIT)

Status: code verified, 70 files readable, 13 matches

[44518] doi:10.1016/j.dcn.2022.101112 [paper]

Prefrontal modulation of frustration-related physiology in preschool children ranging from low to severe irritability.

Journal: Developmental cognitive neuroscience

Status: code on request

[44519] doi:10.1016/j.xcrm.2022.100623 [paper]

Patient-derived models of brain metastases recapitulate human disseminated disease.

Journal: Cell reports. Medicine

Status: code on request

[44520] doi:10.1038/s41390-022-02075-y [paper, data]

Severe intraventricular hemorrhage causes long-lasting structural damage in a preterm rabbit pup model.

Journal: Pediatric research

Status: data only, 4 datasets cited

[44521] doi:10.1038/s41467-022-30003-5 [paper, repository]

Alterations in homologous recombination repair genes in prostate cancer brain metastases.

Journal: Nature communications

Authors' code: broadinstitute/phylogicndt (other)

Status: code verified, 42 files readable, 1 match

[44522] doi:10.1038/s41467-022-30071-7 [paper, repository]

Alternative splicing modulation by G-quadruplexes.

Journal: Nature communications

Authors' code: Zenodo 6324564 (other-open), hemberg-lab/Georgakopoulos_Soares_and_Parada_2022 (no license)

Status: code verified, 10 files readable, 6 matches

[44523] doi:10.1038/s41467-022-30110-3 [paper, repository]

Multivariate genome-wide association study on tissue-sensitive diffusion metrics highlights pathways that shape the human brain.

Journal: Nature communications

Authors' code: ABCD-STUDY (no license), cmig-research-group/RSIGWAS (BSD-2-Clause), Zenodo 6289762 (other-open)

Status: code verified, 24 files readable, 5 matches

[44524] doi:10.1038/s41467-022-30198-7 [paper, repository]

The representation of context in mouse hippocampus is preserved despite neural drift.

Journal: Nature communications

Authors' code: akeinath/MorphExperiments (no license)

Status: code verified, 175 files readable, 2 matches

[44525] doi:10.1038/s41598-022-11269-7 [paper, repository]

Juvenile handling rescues autism-related effects of prenatal exposure to valproic acid.

Journal: Scientific reports

Authors' code: OSF 3zbvf (no license)

Status: code verified, 2 files readable, 5 matches

[44526] doi:10.1111/psyp.14077 [paper, repository]

The role of the primary motor cortex in motor imagery: A theta burst stimulation study.

Journal: Psychophysiology

Authors' code: OSF 6rzym (no license)

Status: code verified, 1 file readable, 2 matches

[44527] doi:10.1186/s13063-022-06244-6 [paper, repository]

A cost-effectiveness and value of information analysis to inform future research of tranexamic acid for older adults experiencing mild traumatic brain injury.

Journal: Trials

Authors' code: jackrdwilliams/CRASH-Mild-Model (MIT)

Status: code verified, 8 files readable, 3 matches

[44528] doi:10.1186/s40035-022-00300-6 [paper, data]

Parvalbumin neuroplasticity compensates for somatostatin impairment, maintaining cognitive function in Alzheimer's disease.

Journal: Translational neurodegeneration

Status: data only, 7 datasets cited

[44529] doi:10.1371/journal.pone.0267345 [paper, data]

Corticotropin releasing factor (CRF) systems: Promoting cocaine pursuit without distress via incentive motivation.

Journal: PloS one

Status: data only, 1 dataset cited

[44530] doi:10.1523/eneuro.0068-22.2022 [paper, repository]

Long-Term Effects of Repeated Social Defeat Stress on Brain Activity during Social Interaction in BALB/c Mice.

Journal: eNeuro

Authors' code: balb-sds/semi-autmated-cFos-analysis (no license)

Status: code verified, 6 files readable, 3 matches

[44531] doi:10.1523/eneuro.0482-21.2022 [paper, data]

SMART: An Open-Source Extension of WholeBrain for Intact Mouse Brain Registration and Segmentation.

Journal: eNeuro

Status: data only, 1 dataset cited

[44532] doi:10.3389/fbioe.2022.873530 [paper, data]

Angiographic Pulse Wave Coherence in the Human Brain.

Journal: Frontiers in bioengineering and biotechnology

Status: data only, 1 dataset cited

[44533] doi:10.3389/fnetp.2022.893743 [paper, repository]

The Reconstruction of Causal Networks in Physiology.

Journal: Frontiers in network physiology

Authors' code: moritz-g/causal_networks_physiology (no license)

Status: code verified, 8 files readable, 9 matches

[44534] doi:10.3389/fnins.2022.858126 [paper, data]

DeePred-BBB: A Blood Brain Barrier Permeability Prediction Model With Improved Accuracy.

Journal: Frontiers in neuroscience

Status: data only, 10 datasets cited

[44535] doi:10.3389/fnins.2022.869426 [paper, repository]

Ear-EEG Measures of Auditory Attention to Continuous Speech.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 6379903 (other-open), Zenodo 5946875 (CC-BY-4.0), bjoernholtze/eareegauditoryattentionmeasures (MIT)

Status: code verified, 91 files readable, 20 matches

[44536] doi:10.3390/brainsci12050596 [paper, data]

Different Approximation Methods for Calculation of Integrated Information Coefficient in the Brain during Instrumental Learning.

Journal: Brain sciences

Status: data only, 2 datasets cited

[44537] doi:10.3390/cancers14092285 [paper, data]

New Developments in the Pathogenesis, Therapeutic Targeting, and Treatment of Pediatric Medulloblastoma.

Journal: Cancers

Status: data only, 2 datasets cited

[44538] doi:10.7554/elife.73097 [paper, repository]

Eye movements reveal spatiotemporal dynamics of visually-informed planning in navigation.

Journal: eLife

Authors' code: neuro-sci/gaze-navigation (no license)

Status: code verified, 83 files readable, 12 matches

Monday, 2 May 2022 (23 papers)

[44539] doi:10.1002/oby.23432 [paper, repository]

FGF21 response to sucrose is associated with BMI and dorsal striatal signaling in humans.

Journal: Obesity (Silver Spring, Md.)

Authors' code: OSF e7b9f (no license)

Status: code verified, 2 files readable

[44540] doi:10.1016/j.nicl.2022.103028 [paper]

Modulation of dorsolateral prefrontal cortex functional connectivity after intermittent theta-burst stimulation in depression: Combining findings from fNIRS and fMRI.

Journal: NeuroImage. Clinical

Status: code on request

[44541] doi:10.1038/s12276-022-00761-9 [paper, data]

Suberoylanilide hydroxamic acid suppresses axonal damage and neurological dysfunction after subarachnoid hemorrhage via the HDAC1/HSP70/TDP-43 axis.

Journal: Experimental & molecular medicine

Status: data only, 1 dataset cited

[44542] doi:10.1038/s41467-022-29942-w [paper, repository]

Transcription Factor 4 loss-of-function is associated with deficits in progenitor proliferation and cortical neuron content.

Journal: Nature communications

Authors' code: apcamargo/2020-pths-rna-seq-analysis (no license), Zenodo 6323774 (other-open), apcamargo/2022-pths-rna-seq-analysis (no license)

Status: code verified, 18 files readable, 9 matches

[44543] doi:10.1038/s41467-022-30081-5 [paper, data]

Activation and allosteric regulation of the orphan GPR88-Gi1 signaling complex.

Journal: Nature communications

Status: data only, 1 dataset cited

[44544] doi:10.1038/s41593-022-01052-2 [paper, repository]

Maladaptive myelination promotes generalized epilepsy progression.

Journal: Nature neuroscience

Authors' code: huguenardlab/EEG (no license)

Status: code verified, 4 files readable

[44545] doi:10.1038/s41593-022-01060-2 [paper, data]

Cerebrospinal fluid can exit into the skull bone marrow and instruct cranial hematopoiesis in mice with bacterial meningitis.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[44546] doi:10.1038/s42003-022-03361-5 [paper, repository]

Sense of self impacts spatial navigation and hexadirectional coding in human entorhinal cortex.

Journal: Communications biology

Authors' code: OSF u8vha (no license)

Status: code verified, 1 file readable, 3 matches

[44547] doi:10.1073/pnas.2113701119 [paper, repository]

A novel regulatory gene promotes novel cell fate by suppressing ancestral fate in the sea anemone <i>Nematostella vectensis</i>.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: josephryan (no license)

Status: code verified

[44548] doi:10.1109/access.2022.3171927 [paper, repository]

BrainSec: Automated Brain Tissue Segmentation Pipeline for Scalable Neuropathological Analysis.

Journal: IEEE access : practical innovations, open solutions

Authors' code: ucdrubinet/BrainSec (GPL-3.0)

Status: code verified, 81 files readable, 15 matches

[44549] doi:10.1186/s11689-022-09441-1 [paper, data]

Characterization of cell-cell communication in autistic brains with single-cell transcriptomes.

Journal: Journal of neurodevelopmental disorders

Status: data only, 9 datasets cited

[44550] doi:10.1186/s12915-022-01293-4 [paper, data]

The steroid hormone estriol (E&lt;sub&gt;3&lt;/sub&gt;) regulates epigenetic programming of fetal mouse brain and reproductive tract.

Journal: BMC biology

Status: data only, 3 datasets cited

[44551] doi:10.1186/s13041-022-00925-8 [paper, data]

Construction of a lncRNA-associated competing endogenous RNA regulatory network after traumatic brain injury in mouse.

Journal: Molecular brain

Status: data only, 1 dataset cited

[44552] doi:10.1186/s13041-022-00926-7 [paper, data]

New neurons in old brains: implications of age in the analysis of neurogenesis in post-mortem tissue.

Journal: Molecular brain

Status: data only, 1 dataset cited

[44553] doi:10.1371/journal.pbio.3001620 [paper, repository]

A multistudy analysis reveals that evoked pain intensity representation is distributed across brain systems.

Journal: PLoS biology

Authors' code: canlab/petre_scope_of_pain_representation (no license), canlab/canlab_single_trials (GPL-3.0), bogpetre/mlpcr0 (no license)

Status: code verified, 53 files readable, 1 match

[44554] doi:10.1371/journal.pcbi.1009083 [paper, repository]

Unsupervised learning for robust working memory.

Journal: PLoS computational biology

Authors' code: jtg374/NDF_ringNet_plasticity (no license)

Status: code verified, 37 files readable, 1 match

[44555] doi:10.1523/jneurosci.0572-21.2022 [paper, repository]

Conflict Detection in a Sequential Decision Task Is Associated with Increased Cortico-Subthalamic Coherence and Prolonged Subthalamic Oscillatory Response in the β Band.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: zits69/MOUSE_LFPMEG (no license)

Status: code verified, 14 files readable, 4 matches

[44556] doi:10.3389/fncel.2022.853035 [paper, data]

Cisplatin Neurotoxicity Targets Specific Subpopulations and K&lt;sup&gt;+&lt;/sup&gt; Channels in Tyrosine-Hydroxylase Positive Dorsal Root Ganglia Neurons.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[44557] doi:10.3389/fncom.2022.885126 [paper, repository]

Abnormal Dynamic Functional Networks in Subjective Cognitive Decline and Alzheimer's Disease.

Journal: Frontiers in computational neuroscience

Authors' code: sandywang/GRETNA (GPL-3.0)

Status: code verified, 453 files readable, 4 matches

[44558] doi:10.3389/fneur.2022.827816 [paper, data]

Through-Plane Super-Resolution With Autoencoders in Diffusion Magnetic Resonance Imaging of the Developing Human Brain.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[44559] doi:10.3389/fnins.2022.895181 [paper, repository]

Detecting Brain Structure-Specific Methylation Signatures and Rules for Alzheimer's Disease.

Journal: Frontiers in neuroscience

Authors' code: scikit-learn-contrib/boruta_py (BSD-3-Clause)

Status: code verified, 8 files readable, 2 matches

[44560] doi:10.3389/frai.2022.813842 [paper, repository]

Toward Sharing Brain Images: Differentially Private TOF-MRA Images With Segmentation Labels Using Generative Adversarial Networks.

Journal: Frontiers in artificial intelligence

Authors' code: prediction2020/Labeled-TOF-MRA-with-DP (MIT)

Status: code verified, 12 files readable, 1 match

[44561] doi:10.3390/biology11050700 [paper]

Reduced Cross-Frequency Coupling and Daytime Sleepiness in Obstructive Sleep Apnea Patients.

Journal: Biology

Status: code on request

Sunday, 1 May 2022 (82 papers, 15 on this page)

[44562] doi:10.1001/jamapsychiatry.2022.0407 [paper, data]

Inflammation and Brain Structure in Schizophrenia and Other Neuropsychiatric Disorders: A Mendelian Randomization Study.

Journal: JAMA psychiatry

Status: data only, 3 datasets cited

[44563] doi:10.1016/j.celrep.2022.110756 [paper, repository]

Choice-selective sequences dominate in cortical relative to thalamic inputs to NAc to support reinforcement learning.

Journal: Cell reports

Authors' code: baiydaavi/RL_models_with_choice_selective_sequences (Apache-2.0), nfparker/event_encoding_model (no license)

Status: code verified, 17 files readable, 10 matches

[44564] doi:10.1016/j.celrep.2022.110765 [paper, data]

HIV Tat and cocaine interactively alter genome-wide DNA methylation and gene expression and exacerbate learning and memory impairments.

Journal: Cell reports

Status: code on request, 1 dataset cited

[44565] doi:10.1016/j.celrep.2022.110776 [paper]

Cholesterol determines the cytosolic entry and seeded aggregation of tau.

Journal: Cell reports

Status: code on request

[44566] doi:10.1016/j.celrep.2022.110790 [paper, data]

Loss-of-function variants in the schizophrenia risk gene SETD1A alter neuronal network activity in human neurons through the cAMP/PKA pathway.

Journal: Cell reports

Status: data only, 3 datasets cited

[44567] doi:10.1016/j.celrep.2022.110801 [paper, repository]

Movement-specific signaling is differentially distributed across motor cortex layer 5 projection neuron classes.

Journal: Cell reports

Authors' code: DuguidLab (no license)

Status: code verified

[44568] doi:10.1016/j.celrep.2022.110811 [paper]

The ciliary gene INPP5E confers dorsal telencephalic identity to human cortical organoids by negatively regulating Sonic hedgehog signaling.

Journal: Cell reports

Status: code on request

[44569] doi:10.1016/j.celrep.2022.110823 [paper, repository]

Divergent properties and independent regulation of striatal dopamine and GABA co-transmission.

Journal: Cell reports

Authors' code: StrowbridgeLab/Toronado-LaserScanning (no license)

Status: dead link

[44570] doi:10.1016/j.celrep.2022.110824 [paper]

The non-essential TSC complex component TBC1D7 restricts tissue mTORC1 signaling and brain and neuron growth.

Journal: Cell reports

Status: code on request

[44571] doi:10.1016/j.celrep.2022.110839 [paper]

Homogeneity of antibody-drug conjugates critically impacts the therapeutic efficacy in brain tumors.

Journal: Cell reports

Status: code on request

[44572] doi:10.1016/j.celrep.2022.110868 [paper, repository]

Rapid assembly of a polar network architecture drives efficient actomyosin contractility.

Journal: Cell reports

Authors' code: Zenodo 6486924 (other-open), ktyman2/pulse-actomyosin-contraction (no license)

Status: code verified, 36 files readable, 5 matches

[44573] doi:10.1016/j.celrep.2022.110869 [paper]

Phosphatidylinositol transfer protein/planar cell polarity axis regulates neocortical morphogenesis by supporting interkinetic nuclear migration.

Journal: Cell reports

Status: code on request

[44574] doi:10.1016/j.celrep.2022.110874 [paper, repository]

Cholinergic interneurons mediate cocaine extinction in male mice through plasticity across medium spiny neuron subtypes.

Journal: Cell reports

Authors' code: neurodroid/stimfit (GPL-2.0)

Status: code verified, 237 files readable, 1 match

[44575] doi:10.1016/j.celrep.2022.110892 [paper, repository]

Differentiation of Hebbian and homeostatic plasticity mechanisms within layer 5 visual cortex neurons.

Journal: Cell reports

Authors' code: Zenodo 6482880 (other-open)

Status: code verified, 5 files readable

[44576] doi:10.1016/j.xcrm.2022.100630 [paper]

Aβ oligomer concentration in mouse and human brain and its drug-induced reduction ex vivo.

Journal: Cell reports. Medicine

Status: code on request

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