Every paper, by date: page 198

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 198 of 200: 12 June 2022 to 1 June 2022.

Sunday, 12 June 2022 (2 papers)

[44129] doi:10.1007/s13760-022-01984-3 [paper, data]

Eotaxin-1 (CCL11) in neuroinflammatory disorders and possible role in COVID-19 neurologic complications.

Journal: Acta neurologica Belgica

Status: data only, 2 datasets cited

[44130] doi:10.3390/ijms23126558 [paper, repository]

Slaying (Yet Again) the Brain-Eating Zombie Called the "Isochore Theory": A Segmentation Algorithm Used to "Confirm" the Existence of Isochores Creates "Isochores" Where None Exist.

Journal: International journal of molecular sciences

Authors' code: RackS103/Segmentation-Algorithm-Comparison (MIT)

Status: code verified, 10 files readable, 5 matches

Saturday, 11 June 2022 (9 papers)

[44131] doi:10.1002/ana.26419 [paper, repository]

Magnetic Resonance Imaging Evaluation of Perivascular Space Abnormalities in Neuromyelitis Optica.

Journal: Annals of neurology

Authors' code: sunhongfu/QSM (MIT)

Status: code verified, 165 files readable, 3 matches

[44132] doi:10.1007/s11357-022-00602-7 [paper, repository]

Systemic inflammatory markers in relation to cognitive function and measures of brain atrophy: a Mendelian randomization study.

Journal: GeroScience

Authors' code: kn3in/mRnd (no license)

Status: code verified, 8 files readable, 2 matches

[44133] doi:10.1016/j.isci.2022.104580 [paper]

A systematic characterization of microglia-like cell occurrence during retinal organoid differentiation.

Journal: iScience

Status: code on request

[44134] doi:10.1016/j.ynirp.2022.100109 [paper, repository]

The effect of transcranial direct current stimulation on the interplay between executive control, behavioral variability and mind wandering: A registered report.

Journal: Neuroimage. Reports

Authors' code: OSF t2b3m (no license), OSF 3fcsx (no license), OSF ctmbw (no license), OSF w73xj (no license)

Status: code verified

[44135] doi:10.1186/s12885-022-09682-2 [paper, data]

Integrative analysis of cell adhesion molecules in glioblastoma identified prostaglandin F2 receptor inhibitor (PTGFRN) as an essential gene.

Journal: BMC cancer

Status: data only, 2 datasets cited

[44136] doi:10.1186/s12974-022-02501-2 [paper, data]

Intermittent theta-burst stimulation improves motor function by inhibiting neuronal pyroptosis and regulating microglial polarization via TLR4/NFκB/NLRP3 signaling pathway in cerebral ischemic mice.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[44137] doi:10.1186/s12974-022-02503-0 [paper, data]

Adaptation of prelimbic cortex mediated by IL-6/STAT3/Acp5 pathway contributes to the comorbidity of neuropathic pain and depression in rats.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[44138] doi:10.1186/s13024-022-00547-7 [paper, data]

Novel App knock-in mouse model shows key features of amyloid pathology and reveals profound metabolic dysregulation of microglia.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[44139] doi:10.3390/biomedicines10061384 [paper, data]

High-Frequency Irreversible Electroporation (H-FIRE) Induced Blood-Brain Barrier Disruption Is Mediated by Cytoskeletal Remodeling and Changes in Tight Junction Protein Regulation.

Journal: Biomedicines

Status: data only, 1 dataset cited

Friday, 10 June 2022 (30 papers)

[44140] doi:10.1007/s00521-022-07424-w [paper, data]

Machine learning applications for COVID-19 outbreak management.

Journal: Neural computing & applications

Status: data only, 7 datasets cited

[44141] doi:10.1016/j.dib.2022.108379 [paper, data]

Experimental radar data for monitoring brain atrophy progression.

Journal: Data in brief

Status: data only, 2 datasets cited

[44142] doi:10.1016/j.isci.2022.104573 [paper]

<i>Prkn</i> knockout mice show autistic-like behaviors and aberrant synapse formation.

Journal: iScience

Status: code on request

[44143] doi:10.1016/j.neuroimage.2022.119360 [paper, data]

Empirical transmit field bias correction of T1w/T2w myelin maps.

Journal: NeuroImage

Status: data only, 1 dataset cited

[44144] doi:10.1016/j.neuron.2022.05.011 [paper, repository]

Dynamic causal communication channels between neocortical areas.

Journal: Neuron

Authors' code: DylanMuir/stimserver (no license), Zenodo 6512457 (CC-BY-4.0), Zenodo 6512262 (CC-BY-4.0), mitrajz/behavior_code (no license), mitrajz/long_range_com (no license)

Status: code verified, 418 files readable, 5 matches

[44145] doi:10.1038/s41467-022-30963-8 [paper, repository]

Exploring the cellular landscape of circular RNAs using full-length single-cell RNA sequencing.

Journal: Nature communications

Authors' code: circatlas.biols.ac.cn (no license), bioinfo-biols/Code_for_circSC (GPL-3.0), Zenodo 6558694 (other-open)

Status: code verified, 12 files readable, 1 match

[44146] doi:10.1038/s41467-022-30968-3 [paper, repository]

Orgo-Seq integrates single-cell and bulk transcriptomic data to identify cell type specific-driver genes associated with autism spectrum disorder.

Journal: Nature communications

Authors' code: elimlab/orgo-seq (no license)

Status: code verified, 27 files readable, 3 matches

[44147] doi:10.1038/s41467-022-30979-0 [paper, repository]

Excess ribosomal protein production unbalances translation in a model of Fragile X Syndrome.

Journal: Nature communications

Authors' code: sidbdri/empirical_utrs (MIT)

Status: code verified, 11 files readable, 2 matches

[44148] doi:10.1038/s41467-022-31082-0 [paper, data]

Parallel ventral hippocampus-lateral septum pathways differentially regulate approach-avoidance conflict.

Journal: Nature communications

Status: data only, 1 dataset cited

[44149] doi:10.1038/s41598-022-13348-1 [paper, data]

Automated recognition of pain in cats.

Journal: Scientific reports

Status: data only, 1 dataset cited

[44150] doi:10.1038/s41598-022-13674-4 [paper, data]

Maximum entropy models provide functional connectivity estimates in neural networks.

Journal: Scientific reports

Status: data only, 1 dataset cited

[44151] doi:10.1038/s42003-022-03463-0 [paper]

Amygdala-pons connectivity is hyperactive and associated with symptom severity in depression.

Journal: Communications biology

Status: code on request

[44152] doi:10.1038/s42003-022-03479-6 [paper, repository]

Dynamic full-field optical coherence tomography allows live imaging of retinal pigment epithelium stress model.

Journal: Communications biology

Authors' code: Zenodo 3137246 (other-open), Zenodo 5820201 (CC-BY-4.0), julesscholler/ffoct (MIT)

Status: code verified, 103 files readable, 2 matches

[44153] doi:10.1038/s42003-022-03505-7 [paper, repository]

The INSIDEOUT framework provides precise signatures of the balance of intrinsic and extrinsic dynamics in brain states.

Journal: Communications biology

Authors' code: decolab/insideout (CC0-1.0), Zenodo 6561284 (other-open)

Status: code verified, 24 files readable, 3 matches

[44154] doi:10.1089/brain.2021.0189 [paper, repository]

Nx4 Modulated Resting-State Functional Connectivity Between Amygdala and Prefrontal Cortex in a Placebo-Controlled, Crossover Trial.

Journal: Brain connectivity

Authors' code: tarachandtaak/MS2_Nx4 (no license)

Status: code verified, 5 files readable, 1 match

[44155] doi:10.1093/jamiaopen/ooac048 [paper, repository]

Delirium prediction in the ICU: designing a screening tool for preventive interventions.

Journal: JAMIA open

Authors' code: mostafaalishahi/Delirium_prediction_models (no license)

Status: code verified, 7 files readable, 3 matches

[44156] doi:10.1126/sciadv.abc8812 [paper, repository]

Neuronal correlates of selective attention and effort in visual area V4 are invariant of motivational context.

Journal: Science advances

Authors' code: MaunsellLab/Lablib-Public-05-July-2016 (no license)

Status: code verified, 892 files readable, 1 match

[44157] doi:10.1126/sciadv.abn3567 [paper, data]

Daily changes in light influence mood via inhibitory networks within the thalamic perihabenular nucleus.

Journal: Science advances

Status: data only, 1 dataset cited

[44158] doi:10.1155/2022/4096383 [paper, repository]

Enhancing Text Generation via Parse Tree Embedding.

Journal: Computational intelligence and neuroscience

Authors' code: kaggle.com/wcukierski/enron-email-dataset (no license)

Status: dead link

[44159] doi:10.26508/lsa.202201504 [paper, repository]

LncRNA <i>RUS</i> shapes the gene expression program towards neurogenesis.

Journal: Life science alliance

Authors' code: MariusFSchneider/Schneider22 (no license)

Status: code verified, 8 files readable, 2 matches

[44160] doi:10.3389/fneur.2022.859068 [paper, repository]

Learning Models for Traumatic Brain Injury Mortality Prediction on Pediatric Electronic Health Records.

Journal: Frontiers in neurology

Authors' code: fouticus/hptbi-hackathon (MIT)

Status: code verified, 21 files readable, 3 matches

[44161] doi:10.3389/fneur.2022.909436 [paper]

Short Chain Fatty Acids Protect the Cognitive Function of Sepsis Associated Encephalopathy Mice via GPR43.

Journal: Frontiers in neurology

Status: data only

[44162] doi:10.3389/fnhum.2022.875851 [paper, data]

A Regional Smoothing Block Sparse Bayesian Learning Method With Temporal Correlation for Channel Selection in P300 Speller.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[44163] doi:10.3389/fnins.2022.853527 [paper, repository]

Male and Female C57BL/6 Mice Respond Differently to Awake Magnetic Resonance Imaging Habituation.

Journal: Frontiers in neuroscience

Authors' code: CFIN-High-Field-MRI (no license)

Status: code verified

[44164] doi:10.3389/fnmol.2022.903175 [paper, data]

Bulk and Single-Nucleus Transcriptomics Highlight Intra-Telencephalic and Somatostatin Neurons in Alzheimer's Disease.

Journal: Frontiers in molecular neuroscience

Status: data only, 8 datasets cited

[44165] doi:10.3390/jcm11123353 [paper, data]

Mental Stress and Cardiovascular Health-Part I.

Journal: Journal of clinical medicine

Status: data only, 3 datasets cited

[44166] doi:10.3390/jdb10020023 [paper, data]

Emerging Roles of RNA-Binding Proteins in Neurodevelopment.

Journal: Journal of developmental biology

Status: data only, 2 datasets cited

[44167] doi:10.3390/mi13060927 [paper, data]

Motor Imagery EEG Classification Based on Transfer Learning and Multi-Scale Convolution Network.

Journal: Micromachines

Status: data only, 1 dataset cited

[44168] doi:10.3758/s13428-022-01869-6 [paper, repository]

Offline dominance and zeugmatic similarity normings of variably ambiguous words assessed against a neural language model (BERT).

Journal: Behavior research methods

Authors' code: seantrott/zeugma_norms (no license)

Status: code verified, 4 files readable, 1 match

[44169] doi:10.7554/elife.78301 [paper, data]

Tyrosine phosphorylation tunes chemical and thermal sensitivity of TRPV2 ion channel.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 9 June 2022 (29 papers)

[44170] doi:10.1002/acn3.51606 [paper, repository]

Dissecting the limited genetic overlap of Parkinson's and Alzheimer's disease.

Journal: Annals of clinical and translational neurology

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable, 2 matches

[44171] doi:10.1002/hbm.25968 [paper, data]

Effect of neuroanatomy on corticomotor excitability during and after transcranial magnetic stimulation and intermittent theta burst stimulation.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[44172] doi:10.1016/j.crmeth.2022.100233 [paper, repository]

A behavioral paradigm for measuring perceptual distances in mice.

Journal: Cell reports methods

Authors' code: pyrfume/pyrfume-data (MIT), olfa-lab/mouse-perceptual-distance (MIT), Zenodo 6537497 (other-open)

Status: code verified, 94 files readable, 6 matches

[44173] doi:10.1016/j.dcn.2022.101119 [paper, repository]

EEG functional connectivity analysis in the source space.

Journal: Developmental cognitive neuroscience

Authors' code: happytudouni/SourceSpaceFCAnalysis_DCN (MIT)

Status: code verified, 13 files readable, 10 matches

[44174] doi:10.1016/j.isci.2022.104570 [paper, data]

Multimodal imaging of the dynamic brain tumor microenvironment during glioblastoma progression and in response to treatment.

Journal: iScience

Status: code on request, 1 dataset cited

[44175] doi:10.1016/j.neuroimage.2022.119364 [paper, repository]

Arousal impacts distributed hubs modulating the integration of brain functional connectivity.

Journal: NeuroImage

Authors' code: multifunkim/spark-matlab (GPL-3.0), Kangjoo/arousal-rsfMRIpupil-hub (MIT)

Status: code verified, 19 files readable, 7 matches

[44176] doi:10.1016/j.ymthe.2022.06.003 [paper, data]

MicroRNA-124-3p-enriched small extracellular vesicles as a therapeutic approach for Parkinson's disease.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: data only, 1 dataset cited

[44177] doi:10.1038/s41467-022-30628-6 [paper, repository]

Learning emergent partial differential equations in a learned emergent space.

Journal: Nature communications

Authors' code: fkemeth/emergent_pdes (MIT), fkemeth/emergent_pde_videos (no license)

Status: code verified, 48 files readable, 7 matches

[44178] doi:10.1038/s41467-022-30720-x [paper, repository]

Proteomic and functional analyses of the periodic membrane skeleton in neurons.

Journal: Nature communications

Authors' code: ZhuangLab/storm-control (MIT), boranhan/MPS (no license), Zenodo 3264857 (other-open), Zenodo 6513278 (other-open)

Status: code verified, 891 files readable, 5 matches

[44179] doi:10.1038/s41467-022-30827-1 [paper]

Norepinephrine potentiates and serotonin depresses visual cortical responses by transforming eligibility traces.

Journal: Nature communications

Status: code on request

[44180] doi:10.1038/s41467-022-30844-0 [paper, repository]

Cerebellar stimulation prevents Levodopa-induced dyskinesia in mice and normalizes activity in a motor network.

Journal: Nature communications

Authors' code: teamnbc/LID_code_paper (no license)

Status: dead link

[44181] doi:10.1038/s41467-022-31002-2 [paper, data]

Molecularly cleavable bioinks facilitate high-performance digital light processing-based bioprinting of functional volumetric soft tissues.

Journal: Nature communications

Status: code on request, 1 dataset cited

[44182] doi:10.1038/s41467-022-31031-x [paper, data]

Structural basis of ligand binding modes of human EAAT2.

Journal: Nature communications

Status: data only, 1 dataset cited

[44183] doi:10.1038/s41467-022-31053-5 [paper, repository]

Association between resting-state functional brain connectivity and gene expression is altered in autism spectrum disorder.

Journal: Nature communications

Authors' code: konopkalab/AUTISM_rsFMRI_GeneExpressionCorrelations (no license), DeepLearningForPrecisionHealthLab/AUTISM_rsfMRI_ProcessingConnectivityExtractionAndSubjectMatching (no license)

Status: code verified, 49 files readable, 12 matches

[44184] doi:10.1038/s41467-022-31073-1 [paper, repository]

An in vitro model of neuronal ensembles.

Journal: Nature communications

Authors' code: tomerlab/Rabadan_Tomer2022 (MIT)

Status: code verified, 14 files readable, 2 matches

[44185] doi:10.1038/s41531-022-00335-6 [paper, repository]

Lipase regulation of cellular fatty acid homeostasis as a Parkinson's disease therapeutic strategy.

Journal: NPJ Parkinson's disease

Authors' code: jdreyf/ezlimma (MIT)

Status: code verified, 70 files readable

[44186] doi:10.1038/s41562-022-01364-0 [paper, repository]

Putative rhythms in attentional switching can be explained by aperiodic temporal structure.

Journal: Nature human behaviour

Authors' code: gbrookshire/simulated_rhythmic_sampling (MIT)

Status: code verified, 21 files readable, 10 matches

[44187] doi:10.1038/s41597-022-01388-1 [paper, data]

PAPILA: Dataset with fundus images and clinical data of both eyes of the same patient for glaucoma assessment.

Journal: Scientific data

Status: data only, 1 dataset cited

[44188] doi:10.1038/s41597-022-01413-3 [paper, repository]

A Chinese multi-modal neuroimaging data release for increasing diversity of human brain mapping.

Journal: Scientific data

Authors' code: zuoxinian/ccs (GPL-2.0)

Status: code verified, 732 files readable, 17 matches

[44189] doi:10.1038/s41598-022-13708-x [paper, data]

The modulatory effect of adaptive task-switching training on resting-state neural network dynamics in younger and older adults.

Journal: Scientific reports

Status: data only, 1 dataset cited

[44190] doi:10.1038/s42003-022-03489-4 [paper, repository]

Biophysical mechanism underlying compensatory preservation of neural synchrony over the adult lifespan.

Journal: Communications biology

Authors' code: cbdl/wbm_kuramotodelay (no license), Zenodo 6542486 (CC-BY-4.0)

Status: code verified, 12 files readable, 3 matches

[44191] doi:10.1073/pnas.2117234119 [paper, repository]

Dynamical differential covariance recovers directional network structure in multiscale neural systems.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: yschen13/DDC (no license)

Status: code verified, 16 files readable, 5 matches

[44192] doi:10.1093/braincomms/fcac145 [paper, data]

Prionoids in amyotrophic lateral sclerosis.

Journal: Brain communications

Status: data only, 5 datasets cited

[44193] doi:10.1093/braincomms/fcac151 [paper, repository]

Protocol for multicentre comparison of interictal high-frequency oscillations as a predictor of seizure freedom.

Journal: Brain communications

Authors' code: ZurichNCH/Automatic-High-Frequency-Oscillation-Detector (Apache-2.0)

Status: code verified, 21 files readable, 2 matches

[44194] doi:10.1371/journal.pcbi.1009995 [paper, data]

The lexical categorization model: A computational model of left ventral occipito-temporal cortex activation in visual word recognition.

Journal: PLoS computational biology

Status: data only, 2 datasets cited

[44195] doi:10.3389/fmolb.2022.885806 [paper, data]

Novel Brain-Stiffness-Mimicking Matrix Gel Enables Comprehensive Invasion Analysis of 3D Cultured GBM Cells.

Journal: Frontiers in molecular biosciences

Status: data only, 1 dataset cited

[44196] doi:10.3389/fpsyg.2022.852995 [paper, data]

Age-Specific Activation Patterns and Inter-Subject Similarity During Verbal Working Memory Maintenance and Cognitive Reserve.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[44197] doi:10.3390/biom12060808 [paper, data]

<i>Djhsp60</i> Is Required for Planarian Regeneration and Homeostasis.

Journal: Biomolecules

Status: data only, 6 datasets cited

[44198] doi:10.3390/cells11121877 [paper, repository]

Analysis of the Expression and Subcellular Distribution of <i>eEF1A1</i> and <i>eEF1A2</i> mRNAs during Neurodevelopment.

Journal: Cells

Authors' code: VeraUgalde/ARLIN (no license)

Status: code verified, 15 files readable, 2 matches

Wednesday, 8 June 2022 (28 papers)

[44199] doi:10.1002/hbm.25973 [paper]

Attenuated brain white matter functional network interactions in Parkinson's disease.

Journal: Human brain mapping

Status: code on request

[44200] doi:10.1016/j.nicl.2022.103082 [paper, repository]

Multi-site harmonization of MRI data uncovers machine-learning discrimination capability in barely separable populations: An example from the ABIDE dataset.

Journal: NeuroImage. Clinical

Authors' code: rpomponio/neuroHarmonize (MIT)

Status: code verified, 12 files readable, 1 match

[44201] doi:10.1021/acsomega.2c00908 [paper, repository]

Identifying Possible AChE Inhibitors from Drug-like Molecules via Machine Learning and Experimental Studies.

Journal: ACS omega

Authors' code: nguyentrunghai/AchE_inhibitor_ML (no license)

Status: code verified, 3 files readable, 2 matches

[44202] doi:10.1038/s41467-022-30778-7 [paper, data]

Control of CRK-RAC1 activity by the miR-1/206/133 miRNA family is essential for neuromuscular junction function.

Journal: Nature communications

Status: data only, 1 dataset cited

[44203] doi:10.1038/s41467-022-30855-x [paper, repository]

Altered predictive control during memory suppression in PTSD.

Journal: Nature communications

Authors' code: PierreGagnepain/predictive_control (no license), Zenodo 6362400 (other-open)

Status: code verified, 170 files readable, 29 matches

[44204] doi:10.1038/s41467-022-30978-1 [paper, repository]

Striatal hub of dynamic and stabilized prediction coding in forebrain networks for olfactory reinforcement learning.

Journal: Nature communications

Authors' code: DrCarbonCIMH/extractPupil (MIT), DrCarbonCIMH/extractBrain (MIT)

Status: code verified, 21 files readable, 3 matches

[44205] doi:10.1038/s41467-022-31040-w [paper, repository]

Hippocampal representations switch from errors to predictions during acquisition of predictive associations.

Journal: Nature communications

Authors' code: OSF 48xjf (no license)

Status: code verified

[44206] doi:10.1038/s41597-022-01382-7 [paper, data]

A 10-hour within-participant magnetoencephalography narrative dataset to test models of language comprehension.

Journal: Scientific data

Status: data only, 1 dataset cited

[44207] doi:10.1038/s41598-022-13636-w [paper, repository]

Neural network-based clustering model of ischemic stroke patients with a maximally distinct distribution of 1-year vascular outcomes.

Journal: Scientific reports

Authors' code: PurdueMINDS/DeepLifetimeClustering (no license)

Status: code verified, 6 files readable, 4 matches

[44208] doi:10.1038/s41598-022-13695-z [paper, data]

Phoenixin-14 alters transcriptome and steroid profiles in female green-spotted puffer (Dichotomyctere nigroviridis).

Journal: Scientific reports

Status: data only, 1 dataset cited

[44209] doi:10.1038/s42003-022-03496-5 [paper, data]

Brain aging is faithfully modelled in organotypic brain slices and accelerated by prions.

Journal: Communications biology

Status: data only, 1 dataset cited

[44210] doi:10.1126/sciadv.abm6340 [paper, repository]

Neural network learning defines glioblastoma features to be of neural crest perivascular or radial glia lineages.

Journal: Science advances

Authors' code: ernforslab/Hu-et-al._GBMlineage2022 (BSD-3-Clause), Zenodo 6321370 (other-open)

Status: code verified, 25 files readable, 12 matches

[44211] doi:10.1126/sciadv.abn5345 [paper, repository]

Glucose-sensing glucagon-like peptide-1 receptor neurons in the dorsomedial hypothalamus regulate glucose metabolism.

Journal: Science advances

Authors' code: Zenodo 6456623 (CC-BY-4.0)

Status: code verified

[44212] doi:10.1155/2022/2747043 [paper, data]

Differential Regulation of the Immune System in Peripheral Blood Following Ischemic Stroke.

Journal: BioMed research international

Status: data only, 1 dataset cited

[44213] doi:10.1186/s12859-022-04764-1 [paper, repository]

Comprehensive study of semi-supervised learning for DNA methylation-based supervised classification of central nervous system tumors.

Journal: BMC bioinformatics

Authors' code: stjude/Semisupervised_Learning (MIT)

Status: code verified, 80 files readable, 5 matches

[44214] doi:10.1186/s12864-022-08665-8 [paper, data]

Integrative analysis of expression profile indicates the ECM receptor and LTP dysfunction in the glioma-related epilepsy.

Journal: BMC genomics

Status: data only, 1 dataset cited

[44215] doi:10.1242/jcs.258608 [paper, data]

The developmental stage of the medulloblastoma cell-of-origin restricts Sonic hedgehog pathway usage and drug sensitivity.

Journal: Journal of cell science

Status: data only, 2 datasets cited

[44216] doi:10.1371/journal.pcbi.1009338 [paper, repository]

An approximate stochastic optimal control framework to simulate nonlinear neuro-musculoskeletal models in the presence of noise.

Journal: PLoS computational biology

Authors' code: tomvanwouwe1992/SOC_Paper (no license)

Status: code verified, 114 files readable, 19 matches

[44217] doi:10.1371/journal.pgen.1010219 [paper, data]

OLA-1, an Obg-like ATPase, integrates hunger with temperature information in sensory neurons in C. elegans.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[44218] doi:10.1371/journal.pgen.1010221 [paper, repository]

Single cell transcriptomics reveals dysregulated cellular and molecular networks in a fragile X syndrome model.

Journal: PLoS genetics

Authors' code: garber-lab/inDrop_Processing (GPL-3.0), garber-lab/SignallingSingleCell (no license), elisadonnard/FXSinDrop (GPL-3.0)

Status: code verified, 73 files readable, 6 matches

[44219] doi:10.3389/fbinf.2022.865443 [paper, repository]

An End-To-End Pipeline for Fully Automatic Morphological Quantification of Mouse Brain Structures From MRI Imagery.

Journal: Frontiers in bioinformatics

Authors' code: hierakonpolis/mu-net-r (MIT), stjude/DeepBrainIPP (Apache-2.0), JaneliaSciComp/jacs-cm (BSD-3-Clause)

Status: code verified, 84 files readable, 11 matches

[44220] doi:10.3389/fcell.2022.880696 [paper, repository]

Sample Preparation and Warping Accuracy for Correlative Multimodal Imaging in the Mouse Olfactory Bulb Using 2-Photon, Synchrotron X-Ray and Volume Electron Microscopy.

Journal: Frontiers in cell and developmental biology

Authors' code: FrancisCrickInstitute/warpAnnotations (no license)

Status: code verified, 504 files readable

[44221] doi:10.3389/fnins.2022.908330 [paper, repository]

Intrinsic Noise Improves Speech Recognition in a Computational Model of the Auditory Pathway.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 1342401 (other-open)

Status: code verified, 9 files readable

[44222] doi:10.3390/biology11060879 [paper, data]

Possible Event-Related Potential Correlates of Voluntary Attention and Reflexive Attention in the Emei Music Frog.

Journal: Biology

Status: data only, 1 dataset cited

[44223] doi:10.3390/brainsci12060751 [paper, repository]

A Multi-Modal and Multi-Atlas Integrated Framework for Identification of Mild Cognitive Impairment.

Journal: Brain sciences

Authors' code: cs.ucl.ac.uk/staff/g.ridgway (no license)

Status: code verified

[44224] doi:10.3390/e24060799 [paper, data]

A Hybrid Deep Learning Model for Brain Tumour Classification.

Journal: Entropy (Basel, Switzerland)

Status: data only, 2 datasets cited

[44225] doi:10.3758/s13415-022-01017-9 [paper, repository]

Longitudinal maturation of resting state networks: Relevance to sustained attention and attention deficit/hyperactivity disorder.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: Zenodo 3628880 (Apache-2.0), nipy/nipype (Apache-2.0)

Status: code verified, 2,754 files readable, 4 matches

[44226] doi:10.7554/elife.77115 [paper, repository]

Sparse genetically defined neurons refine the canonical role of periaqueductal gray columnar organization.

Journal: eLife

Authors' code: schuettepeter/l-vlPAG_ActiveAvoidance (no license)

Status: code verified, 2 files readable, 3 matches

Tuesday, 7 June 2022 (18 papers)

[44227] doi:10.1002/hbm.25949 [paper, repository]

Cognitive enhancement: Effects of methylphenidate, modafinil, and caffeine on latent memory and resting state functional connectivity in healthy adults.

Journal: Human brain mapping

Authors' code: MaxiBecker/Neuroenhancement (GPL-3.0)

Status: code verified, 2 files readable, 2 matches

[44228] doi:10.1007/s00429-022-02511-z [paper, data]

Disconnections in personal neglect.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[44229] doi:10.1007/s00429-022-02515-9 [paper, data]

Spatio-temporal brain dynamics of self-identity: an EEG source analysis of the current and past self.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[44230] doi:10.1007/s11517-022-02591-3 [paper, repository]

Classification of SARS-CoV-2 viral genome sequences using Neurochaos Learning.

Journal: Medical & biological engineering & computing

Authors' code: HarikrishnanNB/genome-classification-nl (Apache-2.0)

Status: code verified, 43 files readable, 4 matches

[44231] doi:10.1016/j.isci.2022.104543 [paper]

Model scenarios for cell cycle re-entry in Alzheimer's disease.

Journal: iScience

Status: code on request

[44232] doi:10.1016/j.nicl.2022.103079 [paper, data]

An ecological approach to identify distinct neural correlates of disinhibition in frontotemporal dementia.

Journal: NeuroImage. Clinical

Status: data only, 2 datasets cited

[44233] doi:10.1016/j.xpro.2022.101421 [paper]

<i>In utero</i> electroporation and cranial window implantation for <i>in vivo</i> wide-field two-photon calcium imaging using G-CaMP9a transgenic mice.

Journal: STAR protocols

Status: code on request

[44234] doi:10.1038/s41467-022-30275-x [paper, repository]

Electro-optical mechanically flexible coaxial microprobes for minimally invasive interfacing with intrinsic neural circuits.

Journal: Nature communications

Authors' code: Spencer-W/EO-Flex-Algorithms (GPL-3.0)

Status: code verified, 14 files readable, 14 matches

[44235] doi:10.1038/s41467-022-30614-y [paper, repository]

JMJD3 intrinsically disordered region links the 3D-genome structure to TGFβ-dependent transcription activation.

Journal: Nature communications

Authors' code: MolecularImagingPlatformIBMB (no license)

Status: code verified

[44236] doi:10.1038/s41467-022-30825-3 [paper, repository]

Mafa-dependent GABAergic activity promotes mouse neonatal apneas.

Journal: Nature communications

Authors' code: yzerlaut.github.io/elphy (no license)

Status: code verified

[44237] doi:10.1097/aud.0000000000001246 [paper, data]

Random Forest Classification to Predict Response to High-Definition Transcranial Direct Current Stimulation for Tinnitus Relief: A Preliminary Feasibility Study.

Journal: Ear and hearing

Status: data only, 1 dataset cited

[44238] doi:10.1155/2022/2484081 [paper, repository]

Optimized Multiscale Entropy Model Based on Resting-State fMRI for Appraising Cognitive Performance in Healthy Elderly.

Journal: Computational and mathematical methods in medicine

Authors' code: juanitacabral/LEiDA (no license)

Status: code verified, 45 files readable

[44239] doi:10.2147/nss.s362205 [paper, data]

The Combination of Betahistine and Oxybutynin Increases Respiratory Control Sensitivity (Loop Gain) in People with Obstructive Sleep Apnea: A Randomized, Placebo-Controlled Trial.

Journal: Nature and science of sleep

Status: data only, 1 dataset cited

[44240] doi:10.3389/fnins.2022.869081 [paper, data]

The Alteration Profiles of m⁶A-Tagged circRNAs in the Peri-Infarct Cortex After Cerebral Ischemia in Mice.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[44241] doi:10.3389/fnins.2022.887634 [paper, repository]

FetalGAN: Automated Segmentation of Fetal Functional Brain MRI Using Deep Generative Adversarial Learning and Multi-Scale 3D U-Net.

Journal: Frontiers in neuroscience

Authors' code: BioMedIA/IRTK (other)

Status: code verified, 951 files readable, 2 matches

[44242] doi:10.3389/fphys.2022.911097 [paper, repository]

<i>Anopheles stephensi</i> Feeding, Flight Behavior, and Infection With Malaria Parasites are Altered by Ingestion of Serotonin.

Journal: Frontiers in physiology

Authors' code: Zenodo 5579784 (other-open), riffelllab/windtunnel_trajectoryanalyses (GPL-3.0)

Status: code verified, 136 files readable, 2 matches

[44243] doi:10.3390/biom12060800 [paper, data]

Breaching Brain Barriers: B Cell Migration in Multiple Sclerosis.

Journal: Biomolecules

Status: data only, 1 dataset cited

[44244] doi:10.7554/elife.78840 [paper, repository]

Functional coupling between TRPV4 channel and TMEM16F modulates human trophoblast fusion.

Journal: eLife

Authors' code: yz299/matlabcode (no license)

Status: code verified, 2 files readable

Monday, 6 June 2022 (29 papers)

[44245] doi:10.1002/cam4.4913 [paper, data]

Comprehensive analyses indicated the association between m6A related long non-coding RNAs and various pathways in glioma.

Journal: Cancer medicine

Status: data only, 4 datasets cited

[44246] doi:10.1002/hbm.25960 [paper, repository]

Causal effects of cingulate morphology on executive functions in healthy young adults.

Journal: Human brain mapping

Authors' code: CCC-members/HCP-Anat-R (no license)

Status: code verified, 2 files readable, 1 match

[44247] doi:10.1002/hbm.25966 [paper, repository]

Interacting brains revisited: A cross-brain network neuroscience perspective.

Journal: Human brain mapping

Authors' code: ChristianGerloff/interbrain-network-embedding (BSD-3-Clause)

Status: code verified, 17 files readable, 3 matches

[44248] doi:10.1007/s10548-022-00897-x [paper, repository]

Brain Reactions to Opening and Closing the Eyes: Salivary Cortisol and Functional Connectivity.

Journal: Brain topography

Authors' code: PoChihKuo/icc-neuroimage (no license)

Status: code verified, 4 files readable

[44249] doi:10.1016/j.crmeth.2022.100227 [paper, repository]

Fast construction of interpretable whole-brain decoders.

Journal: Cell reports methods

Authors' code: sangillee/TPLSm (GPL-3.0), sangillee/TPLSp (MIT), OSF jrtyu (no license), sangillee/GLMNET64MATLAB (no license)

Status: code verified, 62 files readable, 11 matches

[44250] doi:10.1016/j.dib.2022.108355 [paper, data]

Experimental data on developmental elimination of retrosplenial cortex GABAergic interneurons in a mouse model of ethanol exposure during the last trimester of human pregnancy.

Journal: Data in brief

Status: data only, 3 datasets cited

[44251] doi:10.1016/j.isci.2022.104539 [paper]

Imaging the stability of chronic electrical microstimulation using electrodes coated with PEDOT/CNT and iridium oxide.

Journal: iScience

Status: code on request

[44252] doi:10.1038/s41467-022-29656-z [paper, repository]

Diversity of spatiotemporal coding reveals specialized visual processing streams in the mouse cortex.

Journal: Nature communications

Authors' code: figshare 18415925 (CC-BY-4.0)

Status: code verified, 45 files readable, 7 matches

[44253] doi:10.1038/s41467-022-30820-8 [paper, repository]

Machine learning the metastable phase diagram of covalently bonded carbon.

Journal: Nature communications

Authors' code: Srilok/Machine-learning-Metastable-Phase-Diagram (no license)

Status: code verified, 2 files readable, 1 match

[44254] doi:10.1038/s41467-022-30868-6 [paper, data]

Perirenal adipose afferent nerves sustain pathological high blood pressure in rats.

Journal: Nature communications

Status: data only, 1 dataset cited

[44255] doi:10.1038/s41563-022-01272-8 [paper, repository]

Tapered fibertrodes for optoelectrical neural interfacing in small brain volumes with reduced artefacts.

Journal: Nature materials

Authors' code: Zenodo 6477861 (CC-BY-4.0)

Status: code verified

[44256] doi:10.1038/s42003-022-03504-8 [paper, data]

Neural activities in music frogs reveal call variations and phylogenetic relationships within the genus Nidirana.

Journal: Communications biology

Status: code on request, 1 dataset cited

[44257] doi:10.1073/pnas.2204144119 [paper, data]

Acute stress promotes brain network integration and reduces state transition variability.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[44258] doi:10.1098/rsta.2021.0007 [paper, data]

Neural microprobe modelling and microfabrication for improved implantation and mechanical failure mitigation.

Journal: Philosophical transactions. Series A, Mathematical, physical, and engineering sciences

Status: data only, 3 datasets cited

[44259] doi:10.1098/rsta.2021.0268 [paper, repository]

Spatio-temporal feature extraction in sensory electroneurographic signals.

Journal: Philosophical transactions. Series A, Mathematical, physical, and engineering sciences

Authors' code: doi:10.6084/m9.figshare.c.5972655 (no license)

Status: code found, still to be checked

[44260] doi:10.1111/acel.13652 [paper, data]

Accelerated epigenetic aging in newborns with Down syndrome.

Journal: Aging cell

Status: data only, 1 dataset cited

[44261] doi:10.1111/epi.17310 [paper, data]

Virtual epileptic patient brain modeling: Relationships with seizure onset and surgical outcome.

Journal: Epilepsia

Status: data only, 2 datasets cited

[44262] doi:10.1186/s12868-022-00718-8 [paper, data]

Sirt1 protects against hippocampal atrophy and its induced cognitive impairment in middle-aged mice.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[44263] doi:10.1371/journal.pcbi.1010213 [paper, repository]

Deciphering clock cell network morphology within the biological master clock, suprachiasmatic nucleus: From the perspective of circadian wave dynamics.

Journal: PLoS computational biology

Authors' code: hkimman/scnnets (no license)

Status: code verified, 5 files readable, 1 match

[44264] doi:10.1371/journal.pcbi.1010226 [paper, repository]

Non-monotonic effects of GABAergic synaptic inputs on neuronal firing.

Journal: PLoS computational biology

Authors' code: AghilZadeh/GABA (no license)

Status: code verified, 6 files readable, 4 matches

[44265] doi:10.1371/journal.pcbi.1010232 [paper, data]

Correction: Stability of spontaneous, correlated activity in mouse auditory cortex.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[44266] doi:10.1371/journal.pone.0269041 [paper, repository]

Diet drove brain and dental morphological coevolution in strepsirrhine primates.

Journal: PloS one

Authors' code: supp:PMC9170099/pone.0269041.s010.R (no license)

Status: code verified, 1 file readable, 3 matches

[44267] doi:10.3390/ijms23116347 [paper, repository]

Repurposing Histaminergic Drugs in Multiple Sclerosis.

Journal: International journal of molecular sciences

Authors' code: sportingCode/SAveRUNNER (AGPL-3.0)

Status: code verified, 43 files readable

[44268] doi:10.3758/s13423-022-02127-8 [paper, data]

Preferred music listening is associated with perceptual learning enhancement at the expense of self-focused attention.

Journal: Psychonomic bulletin & review

Status: data only, 2 datasets cited

[44269] doi:10.7150/thno.69682 [paper, data]

Challenges and opportunities to penetrate the blood-brain barrier for brain cancer therapy.

Journal: Theranostics

Status: data only, 2 datasets cited

[44270] doi:10.7554/elife.67258 [paper, repository]

A general decoding strategy explains the relationship between behavior and correlated variability.

Journal: eLife

Authors' code: hcc11/GeneralDecoder (no license)

Status: code verified, 26 files readable, 7 matches

[44271] doi:10.7554/elife.69308 [paper, repository]

Sleep-dependent upscaled excitability, saturated neuroplasticity, and modulated cognition in the human brain.

Journal: eLife

Authors' code: doi:10.12751/g-node.5tzhqw (no license)

Status: code verified

[44272] doi:10.7554/elife.75323 [paper, repository]

Prefrontal cortex supports speech perception in listeners with cochlear implants.

Journal: eLife

Authors' code: WUSTL-ORL/NeuroDOT_Beta (other), OSF nkb5v (no license)

Status: code verified, 325 files readable, 13 matches

[44273] doi:10.7554/elife.77918 [paper, repository]

Cross-modality synthesis of EM time series and live fluorescence imaging.

Journal: eLife

Authors' code: zhirongbaolab/CellIDAlignment (no license)

Status: code verified, 78 files readable, 1 match

Sunday, 5 June 2022 (1 paper)

[44274] doi:10.1038/s41598-022-12174-9 [paper, repository]

The role of the anterior temporal cortex in action: evidence from fMRI multivariate searchlight analysis during real object grasping.

Journal: Scientific reports

Authors' code: OSF zxnpv (no license)

Status: empty repository

Saturday, 4 June 2022 (9 papers)

[44275] doi:10.1002/hbm.25964 [paper, repository]

Sulci 3D mapping from human cranial endocasts: A powerful tool to study hominin brain evolution.

Journal: Human brain mapping

Authors' code: jeandumoncel/curve-editor (GPL-3.0)

Status: code verified, 10 files readable

[44276] doi:10.1007/s00018-022-04373-4 [paper]

Glycation of α-synuclein hampers its binding to synaptic-like vesicles and its driving effect on their fusion.

Journal: Cellular and molecular life sciences : CMLS

Status: code on request

[44277] doi:10.1016/j.jbc.2022.102106 [paper, data]

Neural stemness unifies cell tumorigenicity and pluripotent differentiation potential.

Journal: The Journal of biological chemistry

Status: data only, 3 datasets cited

[44278] doi:10.1016/j.nicl.2022.103073 [paper, repository]

Neurocircuit dynamics of arbitration between decision-making strategies across obsessive-compulsive and related disorders.

Journal: NeuroImage. Clinical

Authors' code: dseok/ocd_bdd_arbitration_rsfmri (no license)

Status: code verified, 22 files readable

[44279] doi:10.1016/j.pneurobio.2022.102297 [paper, repository]

Aberrant neural activity in prefrontal pyramidal neurons lacking TDP-43 precedes neuron loss.

Journal: Progress in neurobiology

Authors' code: liang-bo/AutoStereota (MIT)

Status: code verified, 16 files readable

[44280] doi:10.1016/j.xpro.2022.101435 [paper, repository]

A TMS/EEG protocol for the causal assessment of the functions of the oscillatory brain rhythms in perceptual and cognitive processes.

Journal: STAR protocols

Authors' code: metacoglab/HMeta-d (MIT)

Status: code verified, 46 files readable

[44281] doi:10.1186/s12987-022-00333-z [paper, data]

Glioblastoma microenvironment contains multiple hormonal and non-hormonal growth-stimulating factors.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[44282] doi:10.1186/s12987-022-00335-x [paper, repository]

Transcriptional profiling of transport mechanisms and regulatory pathways in rat choroid plexus.

Journal: Fluids and barriers of the CNS

Authors' code: Sorennorge/MacAulayLab-RNAseq2 (no license)

Status: code verified, 45 files readable, 3 matches

[44283] doi:10.1186/s13244-022-01237-0 [paper, repository]

The role of generative adversarial networks in brain MRI: a scoping review.

Journal: Insights into imaging

Authors' code: cabal-cmu/Feedback-Discovery (no license)

Status: code verified, 31 files readable

Friday, 3 June 2022 (30 papers)

[44284] doi:10.1002/da.23267 [paper]

Altered motivation of effortful decision-making for self and others in subthreshold depression.

Journal: Depression and anxiety

Status: code on request

[44285] doi:10.1007/s00018-022-04378-z [paper, data]

Brain proteome profiling implicates the complement and coagulation cascade in multiple system atrophy brain pathology.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[44286] doi:10.1007/s00521-022-07393-0 [paper, repository]

Differentially private multivariate time series forecasting of aggregated human mobility with deep learning: Input or gradient perturbation?

Journal: Neural computing & applications

Authors' code: hharcolezi/ldp-protocols-mobility-cdrs (MIT)

Status: code verified, 12 files readable, 5 matches

[44287] doi:10.1016/j.isci.2022.104525 [paper, data]

Becoming a mother shifts the activity of the social and motivation brain networks in mice.

Journal: iScience

Status: code on request, 1 dataset cited

[44288] doi:10.1016/j.isci.2022.104529 [paper]

Melanopsin photoreception differentially modulates rod-mediated and cone-mediated human temporal vision.

Journal: iScience

Status: code on request

[44289] doi:10.1038/s41380-022-01621-8 [paper, repository]

Ultra-rare and common genetic variant analysis converge to implicate negative selection and neuronal processes in the aetiology of schizophrenia.

Journal: Molecular psychiatry

Authors' code: WonuAkingbuwa/Gene_expression_SCZ (no license)

Status: code verified, 63 files readable, 9 matches

[44290] doi:10.1038/s41386-022-01351-z [paper, repository]

Mobile footprinting: linking individual distinctiveness in mobility patterns to mood, sleep, and brain functional connectivity.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: Zenodo 4010846 (other-open), PennLINC/footprinting (no license), pennbbl/xcpengine (MIT)

Status: code verified, 139 files readable, 12 matches

[44291] doi:10.1038/s41439-022-00197-7 [paper, data]

Thyroid hypogenesis is associated with a novel AKT3 germline variant that causes megalencephaly and cortical malformation.

Journal: Human genome variation

Status: data only, 1 dataset cited

[44292] doi:10.1038/s41531-022-00332-9 [paper, repository]

Neuroimaging signatures predicting motor improvement to focused ultrasound subthalamotomy in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: neuropm-lab.com (no license)

Status: code verified

[44293] doi:10.1038/s41598-022-13220-2 [paper, repository]

Automated soccer head impact exposure tracking using video and deep learning.

Journal: Scientific reports

Authors' code: AHNR0/DeepImpact (no license)

Status: code verified, 47 files readable, 7 matches

[44294] doi:10.1073/pnas.2118448119 [paper, repository]

A feedforward inhibitory premotor circuit for auditory-vocal interactions in zebra finches.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: nortonph/call-timing (GPL-3.0)

Status: code verified, 25 files readable, 6 matches

[44295] doi:10.1073/pnas.2119931119 [paper, repository]

The neural signature of the decision value of future pain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: neurovault.org/collections/10410 (no license), mpcoll/coll_painvalue_2021 (no license), hub.docker.com/r/mpcoll2 (no license)

Status: code verified, 35 files readable, 9 matches

[44296] doi:10.1085/jgp.202113039 [paper, data]

Role of a conserved ion-binding site tyrosine in ion selectivity of the Na+/K+ pump.

Journal: The Journal of general physiology

Status: data only, 2 datasets cited

[44297] doi:10.1126/sciadv.abm6127 [paper, repository]

Modeling spatial, developmental, physiological, and topological constraints on human brain connectivity.

Journal: Science advances

Authors' code: StuartJO/GenerativeNetworkModel (no license), Zenodo 6458464 (CC-BY-4.0)

Status: code verified, 76 files readable, 15 matches

[44298] doi:10.1136/bmjopen-2021-059301 [paper]

Real-time seizure detection in paediatric intensive care patients: the RESET child brain protocol.

Journal: BMJ open

Status: code on request

[44299] doi:10.1155/2022/6856567 [paper, repository]

Heavyweight Statistical Alignment to Guide Neural Translation.

Journal: Computational intelligence and neuroscience

Authors' code: ThienCNguyen/CInN_2022 (no license)

Status: code verified, 1 file readable

[44300] doi:10.1155/2022/7887908 [paper, data]

Prediction of Diabetes through Retinal Images Using Deep Neural Network.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[44301] doi:10.1186/s12883-022-02726-x [paper, repository]

Use of deep artificial neural networks to identify stroke during triage via subtle changes in circulating cell counts.

Journal: BMC neurology

Authors' code: ddsjoberg/dca (other)

Status: code verified, 425 files readable, 2 matches

[44302] doi:10.1186/s12974-022-02493-z [paper, data]

CEST MRI and MALDI imaging reveal metabolic alterations in the cervical lymph nodes of EAE mice.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[44303] doi:10.1186/s12984-022-01026-2 [paper]

Design-development of an at-home modular brain-computer interface (BCI) platform in a case study of cervical spinal cord injury.

Journal: Journal of neuroengineering and rehabilitation

Status: code on request

[44304] doi:10.1186/s12987-022-00344-w [paper, data]

Exposure of human cerebral microvascular endothelial cells hCMEC/D3 to laminar shear stress induces vascular protective responses.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[44305] doi:10.1371/journal.pone.0269491 [paper, data]

Cingulate transcranial direct current stimulation in adults with HIV.

Journal: PloS one

Status: data only, 1 dataset cited

[44306] doi:10.3389/fendo.2022.824661 [paper, data]

Effects of Body Mass Index on Brain Structures in the Elderly: Longitudinal Analyses.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[44307] doi:10.3389/fimmu.2022.875994 [paper]

Impact of Diminished Expression of circRNA on Multiple Sclerosis Pathomechanisms.

Journal: Frontiers in immunology

Status: data only

[44308] doi:10.3389/fncel.2022.896854 [paper, data]

Microrchidia CW-Type Zinc Finger 2, a Chromatin Modifier in a Spectrum of Peripheral Neuropathies.

Journal: Frontiers in cellular neuroscience

Status: data only, 3 datasets cited

[44309] doi:10.3389/fneur.2022.867048 [paper, data]

Neuroplasticity Mechanisms in Frontal Brain Gliomas: A Preliminary Study.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[44310] doi:10.3389/fnhum.2022.895761 [paper]

A Fusion-Based Technique With Hybrid Swarm Algorithm and Deep Learning for Biosignal Classification.

Journal: Frontiers in human neuroscience

Status: code on request

[44311] doi:10.3389/fphar.2022.887981 [paper, repository]

Signatures of Thalamocortical Alpha Oscillations and Synchronization With Increased Anesthetic Depths Under Isoflurane.

Journal: Frontiers in pharmacology

Authors' code: asoplata/propofol-coupling-2017-full (no license)

Status: code verified, 104 files readable, 4 matches

[44312] doi:10.3389/fpsyg.2022.873796 [paper, repository]

Effects of Hemodynamic Differences on the Assessment of Inter-Brain Synchrony Between Adults and Infants.

Journal: Frontiers in psychology

Authors' code: canlab/CanlabCore (GPL-2.0)

Status: code verified, 2,000 files readable, 3 matches

[44313] doi:10.3390/v14061218 [paper, data]

Non-Productive Infection of Glial Cells with SARS-CoV-2 in Hamster Organotypic Cerebellar Slice Cultures.

Journal: Viruses

Status: data only, 1 dataset cited

Thursday, 2 June 2022 (31 papers)

[44314] doi:10.1016/j.cub.2022.05.022 [paper, repository]

Threat history controls flexible escape behavior in mice.

Journal: Current biology : CB

Authors' code: SainsburyWellcomeCentre/lenzietal2022_lse_figures (no license), Zenodo 6483625 (CC-BY-4.0), SainsburyWellcomeCentre/looming_spots (no license), Zenodo 6483482 (CC-BY-4.0)

Status: code verified, 68 files readable, 9 matches

[44315] doi:10.1016/j.isci.2022.104499 [paper, data]

Temporal responses of bumblebee gustatory neurons to sugars.

Journal: iScience

Status: code on request, 1 dataset cited

[44316] doi:10.1016/j.isci.2022.104502 [paper, data]

Molecular and functional basis of high-salt avoidance in a blood-sucking insect.

Journal: iScience

Status: code on request, 3 datasets cited

[44317] doi:10.1016/j.patter.2022.100524 [paper, repository]

DeepND: Deep multitask learning of gene risk for comorbid neurodevelopmental disorders.

Journal: Patterns (New York, N.Y.)

Authors' code: ciceklab/deepnd (no license), Zenodo 6501496 (other-open)

Status: code verified, 7 files readable, 7 matches

[44318] doi:10.1016/j.xpro.2022.101399 [paper, repository]

Protocol to decode representations from EEG data with intermixed signals using temporal signal decomposition and multivariate pattern-analysis.

Journal: STAR protocols

Authors' code: OSF 4qgp2 (no license)

Status: code verified, 8 files readable, 14 matches

[44319] doi:10.1038/s41588-022-01064-5 [paper, repository]

A phenotypic spectrum of autism is attributable to the combined effects of rare variants, polygenic risk and sex.

Journal: Nature genetics

Authors' code: sebatlab/Antaki2021 (no license)

Status: code verified, 9 files readable, 8 matches

[44320] doi:10.1038/s41593-022-01084-8 [paper, data]

Faulty autolysosome acidification in Alzheimer's disease mouse models induces autophagic build-up of Aβ in neurons, yielding senile plaques.

Journal: Nature neuroscience

Status: data only, 2 datasets cited

[44321] doi:10.1038/s41597-022-01364-9 [paper, repository]

AnimalTraits - a curated animal trait database for body mass, metabolic rate and brain size.

Journal: Scientific data

Authors' code: animaltraits/animaltraits.github.io (CC0-1.0), Zenodo 6468938 (other-open)

Status: code verified, 35 files readable, 6 matches

[44322] doi:10.1038/s42003-022-03466-x [paper, repository]

Time-resolved structure-function coupling in brain networks.

Journal: Communications biology

Authors' code: netneurolab/markello_spatialnulls (BSD-3-Clause), dominance-analysis/dominance-analysis (MIT)

Status: code verified, 51 files readable, 4 matches

[44323] doi:10.1073/pnas.2123076119 [paper, repository]

The emergence of a collective sensory response threshold in ant colonies.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 6569620 (CC-BY-4.0)

Status: code verified

[44324] doi:10.1111/psyp.14115 [paper, repository]

Self-regulation of the brain's right frontal Beta rhythm using a brain-computer interface.

Journal: Psychophysiology

Authors' code: OSF 3rnq4 (no license)

Status: empty repository

[44325] doi:10.1155/2022/4928096 [paper, repository]

Framework to Segment and Evaluate Multiple Sclerosis Lesion in MRI Slices Using VGG-UNet.

Journal: Computational intelligence and neuroscience

Authors' code: muschellij2/open_ms_data (no license)

Status: code verified, 29 files readable

[44326] doi:10.1177/00238309221098116 [paper, data]

Processing of Grammatical Agreement in the Face of Variation in Lexical Stress: A Mismatch Negativity Study.

Journal: Language and speech

Status: data only, 1 dataset cited

[44327] doi:10.1186/s12864-022-08584-8 [paper, data]

Integrative analysis of summary data from GWAS and eQTL studies implicates genes differentially expressed in Alzheimer's disease.

Journal: BMC genomics

Status: data only, 1 dataset cited

[44328] doi:10.1186/s41016-022-00282-4 [paper, data]

RNA sequencing analysis between ruptured and un-ruptured brain AVM.

Journal: Chinese neurosurgical journal

Status: data only, 6 datasets cited

[44329] doi:10.1371/journal.pcbi.1009062 [paper, repository]

Priority-based transformations of stimulus representation in visual working memory.

Journal: PLoS computational biology

Authors' code: OSF sgqvn (no license)

Status: code verified, 10 files readable, 5 matches

[44330] doi:10.1371/journal.pcbi.1010198 [paper, repository]

Radical pairs may explain reactive oxygen species-mediated effects of hypomagnetic field on neurogenesis.

Journal: PLoS computational biology

Authors' code: RishabhQuantum/RPM_ROS_HMF (MIT), Zenodo 5606149 (other-open)

Status: code verified, 6 files readable, 1 match

[44331] doi:10.1371/journal.pone.0263908 [paper, data]

In-vivo egfp expression in the honeybee Apis mellifera induced by electroporation and viral expression vector.

Journal: PloS one

Status: data only, 1 dataset cited

[44332] doi:10.1371/journal.pone.0269280 [paper, data]

The relationship between cannabis use and taurine: A MRS and metabolomics study.

Journal: PloS one

Status: data only, 1 dataset cited

[44333] doi:10.18632/aging.204104 [paper]

DNA methylation-regulated YTHDF2 correlates with cell migration and immune cell infiltration in glioma.

Journal: Aging

Status: data only

[44334] doi:10.3389/fcell.2022.903179 [paper, data]

m⁶A Modification Involves in Enriched Environment-Induced Neurogenesis and Cognition Enhancement.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[44335] doi:10.3389/fncel.2022.885569 [paper, data]

Transcriptional Alterations of Mouse Trigeminal Ganglion Neurons Following Orofacial Inflammation Revealed by Single-Cell Analysis.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[44336] doi:10.3389/fnhum.2022.871239 [paper, data]

Retrospective Analysis of Task-Specific Effects on Brain Activity After Stroke: A Pilot Study.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[44337] doi:10.3389/fnimg.2022.861687 [paper, repository]

Synthetic Atrophy for Longitudinal Cortical Surface Analyses.

Journal: Frontiers in neuroimaging

Authors' code: MedICL-VU/Synthetic-Atrophy-For-Longtidunal-Cortical-Surface-Analyses (no license)

Status: code verified, 13 files readable, 6 matches

[44338] doi:10.3389/fnins.2022.884707 [paper, repository]

Dynamic Interrogation of Stochastic Transcriptome Trajectories Using Disease Associated Genes Reveals Distinct Origins of Neurological and Psychiatric Disorders.

Journal: Frontiers in neuroscience

Authors' code: gatsby.ucl.ac.uk/~gretton (no license)

Status: code verified

[44339] doi:10.3389/fnmol.2022.904913 [paper, data]

DNA Methylation-Related circRNA_0116449 Is Involved in Lipid Peroxidation in Traumatic Brain Injury.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[44340] doi:10.3389/fnmol.2022.916249 [paper, data]

Necrosulfonamide Alleviates Acute Brain Injury of Intracerebral Hemorrhage <i>via</i> Inhibiting Inflammation and Necroptosis.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[44341] doi:10.3389/fphar.2022.814271 [paper]

Gastrodin From <i>Gastrodia elata</i> Enhances Cognitive Function and Neuroprotection of AD Mice <i>via</i> the Regulation of Gut Microbiota Composition and Inhibition of Neuron Inflammation.

Journal: Frontiers in pharmacology

Status: data only

[44342] doi:10.3389/fphar.2022.853936 [paper, data]

Sex-Specific Effects of Acute Ethanol Exposure on Locomotory Activity and Exploratory Behavior in Adult Zebrafish (<i>Danio rerio</i>).

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[44343] doi:10.3390/ijms23116223 [paper, data]

Physical Activity Rewires the Human Brain against Neurodegeneration.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[44344] doi:10.3390/pharmaceutics14061195 [paper, data]

Intranasal Methylprednisolone Ameliorates Neuroinflammation Induced by Chronic Toluene Exposure.

Journal: Pharmaceutics

Status: data only, 1 dataset cited

Wednesday, 1 June 2022 (86 papers, 8 on this page)

[44345] doi:10.1001/jamanetworkopen.2022.17854 [paper, repository]

Development and Validation of a Deep Learning Model to Screen for Trisomy 21 During the First Trimester From Nuchal Ultrasonographic Images.

Journal: JAMA network open

Authors' code: dreamenwalker/trisomy21net (no license)

Status: code verified, 5 files readable

[44346] doi:10.1007/s00702-022-02518-0 [paper, data]

Bioinformatics approach reveals the critical role of the NOD-like receptor signaling pathway in COVID-19-associated multiple sclerosis syndrome.

Journal: Journal of neural transmission (Vienna, Austria : 1996)

Status: data only, 1 dataset cited

[44347] doi:10.1007/s12671-022-01910-x [paper, data]

Mindfulness-Based Cognitive Therapy: A Preliminary Examination of the (Event-Related) Potential for Modifying Threat-Related Attentional Bias in Anxiety.

Journal: Mindfulness

Status: data only, 1 dataset cited

[44348] doi:10.1016/j.celrep.2022.110849 [paper]

Genetic loss of function of Ptbp1 does not induce glia-to-neuron conversion in retina.

Journal: Cell reports

Status: code on request

[44349] doi:10.1016/j.celrep.2022.110921 [paper]

Representation of ethological events by basolateral amygdala neurons.

Journal: Cell reports

Status: code on request

[44350] doi:10.1016/j.celrep.2022.110932 [paper, repository]

Recruitment of frontal sensory circuits during visual discrimination.

Journal: Cell reports

Authors' code: Zenodo 6530962 (CC-BY-4.0)

Status: code verified, 1 file readable, 1 match

[44351] doi:10.1016/j.celrep.2022.110951 [paper, repository]

Hebbian activity-dependent plasticity in white matter.

Journal: Cell reports

Authors' code: Zenodo 6532370 (CC-BY-4.0), open.win.ox.ac.uk/pages/alazari (no license)

Status: code verified, 14 files readable, 7 matches

[44352] doi:10.1016/j.celrep.2022.110953 [paper, data]

A brainstem circuit for nausea suppression.

Journal: Cell reports

Status: code on request, 1 dataset cited

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