Every paper, by date: page 197

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 197 of 200: 22 June 2022 to 13 June 2022.

Wednesday, 22 June 2022 (26 papers, 14 on this page)

[43905] doi:10.1111/ejn.15736 [paper, repository]

Decoding violated sensory expectations from the auditory cortex of anaesthetised mice: Hierarchical recurrent neural network depicts separate 'danger' and 'safety' units.

Journal: The European journal of neuroscience

Authors' code: OSF hkmut (no license)

Status: code verified, 20 files readable, 10 matches

[43906] doi:10.1111/ejn.15739 [paper, repository]

Visual illusion susceptibility in autism: A neural model.

Journal: The European journal of neuroscience

Authors' code: sangwookparkbu/sangwookparkbu (no license)

Status: code verified, 7 files readable

[43907] doi:10.1126/sciadv.abn3471 [paper, repository]

Temozolomide-induced guanine mutations create exploitable vulnerabilities of guanine-rich DNA and RNA regions in drug-resistant gliomas.

Journal: Science advances

Authors' code: timplab/Drug_resistant_GBM (no license), Zenodo 6514994 (CC-BY-4.0)

Status: code verified, 5 files readable, 3 matches

[43908] doi:10.1126/sciadv.abn5803 [paper, data]

Cortical-subcortical structural connections support transcranial magnetic stimulation engagement of the amygdala.

Journal: Science advances

Status: data only, 1 dataset cited

[43909] doi:10.1172/jci.insight.158144 [paper, data]

Age-dependent gray matter demyelination is associated with leptomeningeal neutrophil accumulation.

Journal: JCI insight

Status: data only, 1 dataset cited

[43910] doi:10.1371/journal.pcbi.1010229 [paper, repository]

Topological Sholl descriptors for neuronal clustering and classification.

Journal: PLoS computational biology

Authors' code: reemkhalilneurolab/morphology (MIT), reemkhalilneurolab/morphology-figures (no license)

Status: code verified, 104 files readable, 2 matches

[43911] doi:10.3389/fgene.2022.917142 [paper, data]

Causal Inference of Genetic Variants and Genes in Amyotrophic Lateral Sclerosis.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[43912] doi:10.3389/fncel.2022.931247 [paper]

Transcriptomic Profile of Blood-Brain Barrier Remodeling in Cerebral Amyloid Angiopathy.

Journal: Frontiers in cellular neuroscience

Status: data only

[43913] doi:10.3389/fphar.2022.887608 [paper, data]

The Role of Vascular-Immune Interactions in Modulating Chemotherapy Induced Neuropathic Pain.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[43914] doi:10.3389/fphar.2022.926123 [paper, data]

Mechanism of Neural Regeneration Induced by Natural Product LY01 in the 5×FAD Mouse Model of Alzheimer's Disease.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[43915] doi:10.3389/fpsyt.2022.913470 [paper, data]

Accelerated Global and Local Brain Aging Differentiate Cognitively Impaired From Cognitively Spared Patients With Schizophrenia.

Journal: Frontiers in psychiatry

Status: data only, 2 datasets cited

[43916] doi:10.3390/cells11131996 [paper, repository]

Hypothalamic CREB Regulates the Expression of Pomc-Processing Enzyme Pcsk2.

Journal: Cells

Authors' code: OCRC/Zanesco_et_al_2022 (no license)

Status: code verified, 3 files readable, 2 matches

[43917] doi:10.7554/elife.67573 [paper, repository]

Perceptual restoration fails to recover unconscious processing for smooth eye movements after occipital stroke.

Journal: eLife

Authors' code: huxlinlab/TrainingCodes (no license)

Status: code verified, 3 files readable, 2 matches

[43918] doi:10.7554/elife.74149 [paper, data]

Different brain systems support learning from received and avoided pain during human pain-avoidance learning.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 21 June 2022 (29 papers)

[43919] doi:10.1007/s10682-022-10191-8 [paper, repository]

Predation impacts brain allometry in female guppies (<i>Poecilia reticulata</i>).

Journal: Evolutionary ecology

Authors' code: OSF 42cpt (no license)

Status: code verified, 1 file readable

[43920] doi:10.1007/s12031-022-02036-4 [paper, data]

Massive Accumulation of Sphingomyelin Affects the Lysosomal and Mitochondria Compartments and Promotes Apoptosis in Niemann-Pick Disease Type A.

Journal: Journal of molecular neuroscience : MN

Status: data only, 4 datasets cited

[43921] doi:10.1038/s41389-022-00409-3 [paper, data]

MYCN induces cell-specific tumorigenic growth in RB1-proficient human retinal organoid and chicken retina models of retinoblastoma.

Journal: Oncogenesis

Status: data only, 1 dataset cited

[43922] doi:10.1038/s41396-022-01262-3 [paper, data]

Presence of Blastocystis in gut microbiota is associated with cognitive traits and decreased executive function.

Journal: The ISME journal

Status: data only, 1 dataset cited

[43923] doi:10.1038/s42003-022-03553-z [paper]

Spontaneous pauses in firing of external pallidum neurons are associated with exploratory behavior.

Journal: Communications biology

Status: code on request

[43924] doi:10.1073/pnas.2116703119 [paper, data]

Brain tract structure predicts relapse to stimulant drug use.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43925] doi:10.1073/pnas.2121868119 [paper, repository]

Spindle reorientation in response to mechanical stress is an emergent property of the spindle positioning mechanisms.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: rdr.ucl.ac.uk (no license)

Status: code found, still to be checked

[43926] doi:10.1073/pnas.2204066119 [paper, repository]

Temporally and anatomically specific contributions of the human amygdala to threat and safety learning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF srvx7 (no license)

Status: code found, still to be checked

[43927] doi:10.1101/gr.276451.121 [paper, data]

Somatic retrotransposition in the developing rhesus macaque brain.

Journal: Genome research

Status: data only, 1 dataset cited

[43928] doi:10.1111/ejn.15737 [paper, repository]

The representation of shape and texture in category-selective regions of ventral-temporal cortex.

Journal: The European journal of neuroscience

Authors' code: ddcoggan/p008 (no license)

Status: empty repository

[43929] doi:10.1155/2022/2532497 [paper, data]

Human Psychological Disorder towards Cryptography: True Random Number Generator from EEG of Schizophrenics and Its Application in Block Encryption's Substitution Box.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[43930] doi:10.1155/2022/2998242 [paper, repository]

An Improved Transformer-Based Neural Machine Translation Strategy: Interacting-Head Attention.

Journal: Computational intelligence and neuroscience

Authors' code: jessevig/bertviz (Apache-2.0)

Status: code verified, 39 files readable, 3 matches

[43931] doi:10.1186/s12974-022-02524-9 [paper, data]

Positive interaction between GPER and β-alanine in the dorsal root ganglion uncovers potential mechanisms: mediating continuous neuronal sensitization and neuroinflammation responses in neuropathic pain.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[43932] doi:10.1186/s13023-022-02389-4 [paper, data]

Mitochondrial bioenergetic is impaired in Monocarboxylate transporter 1 deficiency: a new clinical case and review of the literature.

Journal: Orphanet journal of rare diseases

Status: data only, 3 datasets cited

[43933] doi:10.1186/s40104-022-00720-4 [paper, data]

Constant light in early life induces fear-related behavior in chickens with suppressed melatonin secretion and disrupted hippocampal expression of clock- and BDNF-associated genes.

Journal: Journal of animal science and biotechnology

Status: data only, 1 dataset cited

[43934] doi:10.1371/journal.pbio.3001684 [paper, repository]

ROS and cGMP signaling modulate persistent escape from hypoxia in Caenorhabditis elegans.

Journal: PLoS biology

Authors' code: wormtracker/zentracker (no license), neuronanalyser/neuronanalyser (no license)

Status: code verified, 9 files readable

[43935] doi:10.1371/journal.pcbi.1010214 [paper, repository]

Neural circuit mechanisms of hierarchical sequence learning tested on large-scale recording data.

Journal: PLoS computational biology

Authors' code: ToshitakeAsabuki/dendritic_gating (no license), zivlab/island (no license)

Status: code verified, 56 files readable, 1 match

[43936] doi:10.1371/journal.pcbi.1010221 [paper, repository]

Error-based or target-based? A unified framework for learning in recurrent spiking networks.

Journal: PLoS computational biology

Authors' code: myscience/goal (no license)

Status: code verified, 16 files readable, 1 match

[43937] doi:10.1371/journal.pcbi.1010227 [paper, repository]

Towards a more general understanding of the algorithmic utility of recurrent connections.

Journal: PLoS computational biology

Authors' code: druckmann-lab/edgeConnectedPixel (no license), druckmann-lab/competitiveForaging (no license)

Status: code verified, 47 files readable, 2 matches

[43938] doi:10.1371/journal.pcbi.1010233 [paper, repository]

Sequence learning, prediction, and replay in networks of spiking neurons.

Journal: PLoS computational biology

Authors' code: Zenodo 5578212 (no license), numenta/htmpapers (AGPL-3.0)

Status: code verified, 159 files readable

[43939] doi:10.1371/journal.pgen.1010278 [paper, data]

Missense variants causing Wiedemann-Steiner syndrome preferentially occur in the KMT2A-CXXC domain and are accurately classified using AlphaFold2.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[43940] doi:10.3389/fimmu.2022.799509 [paper, data]

Characterization of Different Subtypes of Immune Cell Infiltration in Glioblastoma to Aid Immunotherapy.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[43941] doi:10.3389/fnagi.2022.856782 [paper, repository]

Relationship Between Arterial Stiffness Index, Pulse Pressure, and Magnetic Resonance Imaging Markers of White Matter Integrity: A UK Biobank Study.

Journal: Frontiers in aging neuroscience

Authors' code: atefbadji/ASI_PP_MRI_UKBiobank (no license)

Status: code verified, 3 files readable, 5 matches

[43942] doi:10.3389/fnhum.2022.878994 [paper]

Neural Mechanisms Underlying the Effects of Novel Sounds on Task Performance in Children With and Without ADHD.

Journal: Frontiers in human neuroscience

Status: code on request

[43943] doi:10.3389/fpain.2022.880831 [paper, repository]

White Matter Diffusion Properties in Chronic Temporomandibular Disorders: An Exploratory Analysis.

Journal: Frontiers in pain research (Lausanne, Switzerland)

Authors' code: samuelstjean/nlsam (GPL-3.0)

Status: code verified, 17 files readable

[43944] doi:10.3390/s22134670 [paper, data]

Stroke Risk Prediction with Machine Learning Techniques.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[43945] doi:10.3758/s13415-022-01021-z [paper, repository]

Brain stimulation over dorsomedial prefrontal cortex modulates effort-based decision making.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF a2bhy (no license)

Status: code found, still to be checked

[43946] doi:10.7554/elife.73930 [paper, repository]

Sigma oscillations protect or reinstate motor memory depending on their temporal coordination with slow waves.

Journal: eLife

Authors' code: judithnicolas/MotorMemory_OpenLoop_TMR (AGPL-3.0)

Status: code verified, 25 files readable, 10 matches

[43947] doi:10.7554/elife.75316 [paper, repository]

Biophysical K&lt;sub&gt;v&lt;/sub&gt;3 channel alterations dampen excitability of cortical PV interneurons and contribute to network hyperexcitability in early Alzheimer's.

Journal: eLife

Authors' code: ViktorJOlah/KDR-in-FS-PV (GPL-3.0)

Status: code verified, 53 files readable

Monday, 20 June 2022 (25 papers)

[43948] doi:10.1002/hbm.25977 [paper]

Allometry in the corpus callosum in neonates: Sexual dimorphism.

Journal: Human brain mapping

Status: code on request

[43949] doi:10.1002/hbm.25979 [paper, repository]

Evaluating denoising strategies in resting-state functional magnetic resonance in traumatic brain injury (EpiBioS4Rx).

Journal: Human brain mapping

Authors' code: lindenmp/rs-fMRI (MIT)

Status: code verified, 83 files readable, 11 matches

[43950] doi:10.1002/mco2.128 [paper]

Decreased synapse-associated proteins are associated with the onset of epileptic memory impairment in endothelial <i>CDK5</i>-deficient mice.

Journal: MedComm

Status: data only

[43951] doi:10.1002/mds.29123 [paper, repository]

Neuroimaging Correlates of Cognitive Deficits in Wilson's Disease.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: acostaj/QSMexplorer (no license)

Status: code verified, 110 files readable

[43952] doi:10.1002/mds.29128 [paper, repository]

Bacterial Butyrate in Parkinson's Disease Is Linked to Epigenetic Changes and Depressive Symptoms.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: AojiXie/PD_microbiome_DNA_methylation (no license)

Status: code verified, 17 files readable, 6 matches

[43953] doi:10.1007/s00422-022-00936-7 [paper]

Auditory cortex modelled as a dynamical network of oscillators: understanding event-related fields and their adaptation.

Journal: Biological cybernetics

Status: code on request

[43954] doi:10.1016/j.crmeth.2022.100235 [paper, repository]

Identification of the stress granule transcriptome via RNA-editing in single cells and <i>in vivo</i>.

Journal: Cell reports methods

Authors' code: mvanins/stress_granule_RNA_manuscript (no license)

Status: code verified, 22 files readable, 4 matches

[43955] doi:10.1016/j.molmed.2022.06.005 [paper, data]

Olfactory dysfunction in COVID-19: pathology and long-term implications for brain health.

Journal: Trends in molecular medicine

Status: data only, 1 dataset cited

[43956] doi:10.1016/j.ynirp.2022.100114 [paper, repository]

Harmonization of Multi-Center Diffusion Tensor Tractography in Neonates with Congenital Heart Disease: Optimizing Post-Processing and Application of ComBat.

Journal: Neuroimage. Reports

Authors' code: PIRCImagingTools/DINGO (BSD-3-Clause)

Status: code verified, 14 files readable, 1 match

[43957] doi:10.1038/s41467-022-31037-5 [paper, repository]

Multimodal deep learning for Alzheimer's disease dementia assessment.

Journal: Nature communications

Authors' code: vkola-lab/ncomms2022 (MIT)

Status: code verified, 91 files readable, 10 matches

[43958] doi:10.1038/s41531-022-00343-6 [paper]

Deep brain stimulation rectifies the noisy cortex and irresponsive subthalamus to improve parkinsonian locomotor activities.

Journal: NPJ Parkinson's disease

Status: code on request

[43959] doi:10.1038/s41587-022-01353-8 [paper, repository]

Genome-wide mapping of somatic mutation rates uncovers drivers of cancer.

Journal: Nature biotechnology

Authors' code: dcc.icgc.org (no license), ncbi.nlm.nih.gov/projects/gap (no license), anaconda.org/mutation_density/digdriver (no license), maxwellsh/digdriver (BSD-3-Clause)

Status: code verified, 58 files readable, 4 matches

[43960] doi:10.1038/s41597-022-01476-2 [paper, repository]

Chinese adult brain atlas with functional and white matter parcellation.

Journal: Scientific data

Authors' code: bieqa/AdultBrainAtlas (no license)

Status: code verified, 1 file readable

[43961] doi:10.1038/s41598-022-13799-6 [paper, repository]

GABAergic CA1 neurons are more stable following context changes than glutamatergic cells.

Journal: Scientific reports

Authors' code: daharoni/Miniscope_Analysis (MIT)

Status: code verified, 66 files readable

[43962] doi:10.1038/s42003-022-03557-9 [paper, repository]

Face identity coding in the deep neural network and primate brain.

Journal: Communications biology

Authors' code: Zenodo 6575224 (other-open), jingew/id_selective (no license)

Status: code verified, 88 files readable, 3 matches

[43963] doi:10.1038/s43856-022-00133-4 [paper, repository]

A predictive model using the mesoscopic architecture of the living brain to detect Alzheimer's disease.

Journal: Communications medicine

Authors' code: doi:10.17632/rpztyz22df.1 (no license)

Status: code verified

[43964] doi:10.1111/psyp.14121 [paper, repository]

Built environment color modulates autonomic and EEG indices of emotional response.

Journal: Psychophysiology

Authors' code: OSF fudac (no license)

Status: empty repository

[43965] doi:10.1155/2022/1744969 [paper, data]

Med-SRNet: GAN-Based Medical Image Super-Resolution via High-Resolution Representation Learning.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[43966] doi:10.1155/2022/2702328 [paper, data]

A Novel Approach to Predict Brain Cancerous Tumor Using Transfer Learning.

Journal: Computational and mathematical methods in medicine

Status: data only, 1 dataset cited

[43967] doi:10.1186/s13041-022-00942-7 [paper, data]

Ferroptosis participates in neuron damage in experimental cerebral malaria and is partially induced by activated CD8⁺ T cells.

Journal: Molecular brain

Status: data only, 1 dataset cited

[43968] doi:10.3389/fnagi.2022.885500 [paper, data]

Mitochondrial Dysfunction in Parkinson's Disease: From Mechanistic Insights to Therapy.

Journal: Frontiers in aging neuroscience

Status: data only, 3 datasets cited

[43969] doi:10.3389/fninf.2022.853098 [paper, repository]

A Programmable Ontology Encompassing the Functional Logic of the <i>Drosophila</i> Brain.

Journal: Frontiers in neuroinformatics

Authors' code: FlyBrainLab/OlfTrans (BSD-3-Clause), mkturkcan/FeedbackCircuits (BSD-3-Clause), FlyBrainLab/datasets (BSD-3-Clause), Zenodo 44225 (CC-BY-4.0), Zenodo 30036 (CC-BY-4.0)

Status: code verified, 62 files readable, 14 matches

[43970] doi:10.3389/fnins.2022.903881 [paper, data]

Foxa2 and Pet1 Direct and Indirect Synergy Drive Serotonergic Neuronal Differentiation.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[43971] doi:10.3390/diagnostics12061503 [paper, data]

COVID-19 Diagnosis: A Comprehensive Review of the RT-qPCR Method for Detection of SARS-CoV-2.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[43972] doi:10.7554/elife.68852 [paper, repository]

Homotopic contralesional excitation suppresses spontaneous circuit repair and global network reconnections following ischemic stroke.

Journal: eLife

Authors' code: BauerLabCodebase/CodeforBiceElife2022 (Apache-2.0)

Status: code verified, 68 files readable

Sunday, 19 June 2022 (2 papers)

[43973] doi:10.1111/acel.13661 [paper]

Sensitivity of the S1 neuronal calcium network to insulin and Bay-K 8644 in vivo: Relationship to gait, motivation, and aging processes.

Journal: Aging cell

Status: code on request

[43974] doi:10.3390/biomedicines10061446 [paper]

Modulating Microglia/Macrophage Activation by CDNF Promotes Transplantation of Fetal Ventral Mesencephalic Graft Survival and Function in a Hemiparkinsonian Rat Model.

Journal: Biomedicines

Status: data only

Saturday, 18 June 2022 (7 papers)

[43975] doi:10.1002/hbm.25976 [paper, repository]

The role of the ventrolateral anterior temporal lobes in social cognition.

Journal: Human brain mapping

Authors' code: yunshiuan/label4MRI (GPL-3.0)

Status: code verified, 12 files readable

[43976] doi:10.1016/j.isci.2022.104641 [paper, repository]

Mesodiencephalic junction GABAergic inputs are processed separately from motor cortical inputs in the basilar pons.

Journal: iScience

Authors' code: tractatus/wholebrain (GPL-3.0)

Status: code verified, 339 files readable

[43977] doi:10.1038/s41386-022-01355-9 [paper, repository]

The GABA&lt;sub&gt;A&lt;/sub&gt; receptor modulator zolpidem augments hippocampal-prefrontal coupling during non-REM sleep.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: ubartsch/sleepwalker (MIT)

Status: code verified, 93 files readable, 2 matches

[43978] doi:10.1038/s41386-022-01359-5 [paper, data]

Association of day-of-injury plasma glial fibrillary acidic protein concentration and six-month posttraumatic stress disorder in patients with mild traumatic brain injury.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 2 datasets cited

[43979] doi:10.1038/s41467-022-31264-w [paper]

Complex regulation of Gephyrin splicing is a determinant of inhibitory postsynaptic diversity.

Journal: Nature communications

Status: data only

[43980] doi:10.1111/cpr.13286 [paper, data]

Differences in the stemness characteristics and molecular markers of distinct human oral tissue neural crest-derived multilineage cells.

Journal: Cell proliferation

Status: data only, 1 dataset cited

[43981] doi:10.3390/brainsci12060798 [paper, data]

Brain Asymmetry and Its Effects on Gait Strategies in Hemiplegic Patients: New Rehabilitative Conceptions.

Journal: Brain sciences

Status: data only, 1 dataset cited

Friday, 17 June 2022 (31 papers)

[43982] doi:10.1007/s00401-022-02440-5 [paper, data]

Dominant-acting CSF1R variants cause microglial depletion and altered astrocytic phenotype in zebrafish and adult-onset leukodystrophy.

Journal: Acta neuropathologica

Status: data only, 5 datasets cited

[43983] doi:10.1007/s00436-022-07571-y [paper, data]

Activity of isoflavone biochanin A in chronic experimental toxoplasmosis: impact on inflammation.

Journal: Parasitology research

Status: data only, 1 dataset cited

[43984] doi:10.1016/j.isci.2022.104626 [paper]

Biogenic action of <i>Lactobacillus plantarum</i> SBT2227 promotes sleep in <i>Drosophila melanogaster</i>.

Journal: iScience

Status: code on request

[43985] doi:10.1016/j.xpro.2022.101478 [paper]

Imaging neuronal migration and network activity in human forebrain assembloids.

Journal: STAR protocols

Status: code on request

[43986] doi:10.1016/j.xpro.2022.101491 [paper, repository]

Protocol for single-nucleus ATAC sequencing and bioinformatic analysis in frozen human brain tissue.

Journal: STAR protocols

Authors' code: swaruplabUCI/ArchRtoSignac (MIT), Zenodo 6612020 (other-open), greenleaflab/archr (MIT), timoast/signac (other)

Status: code verified, 128 files readable, 34 matches

[43987] doi:10.1021/acschemneuro.2c00124 [paper, data]

Protective Effects of Intranasally Administrated Oxytocin-Loaded Nanoparticles on Pentylenetetrazole-Kindling Epilepsy in Terms of Seizure Severity, Memory, Neurogenesis, and Neuronal Damage.

Journal: ACS chemical neuroscience

Status: data only, 1 dataset cited

[43988] doi:10.1038/s41467-022-31168-9 [paper, data]

Deficiency in endocannabinoid synthase DAGLB contributes to early onset Parkinsonism and murine nigral dopaminergic neuron dysfunction.

Journal: Nature communications

Status: data only, 1 dataset cited

[43989] doi:10.1038/s41467-022-31217-3 [paper, repository]

Functional but not obligatory link between microsaccades and neural modulation by covert spatial attention.

Journal: Nature communications

Authors' code: baiweiliu/vwmms_eeg_alpha-covertattention (no license)

Status: code verified, 7 files readable, 6 matches

[43990] doi:10.1038/s41597-022-01414-2 [paper, data]

Pupillometry and electroencephalography in the digit span task.

Journal: Scientific data

Status: data only, 3 datasets cited

[43991] doi:10.1038/s41598-022-14237-3 [paper]

Non-invasive vagus nerve stimulation in epilepsy patients enhances cooperative behavior in the prisoner's dilemma task.

Journal: Scientific reports

Status: code on request

[43992] doi:10.1038/s41598-022-14309-4 [paper, repository]

Identifying long-range synaptic inputs using genetically encoded labels and volume electron microscopy.

Journal: Scientific reports

Authors' code: mobie/mobie-viewer-fiji (BSD-2-Clause)

Status: code verified, 577 files readable

[43993] doi:10.1155/2022/6486570 [paper, data]

EEG-Based Epileptic Seizure Detection via Machine/Deep Learning Approaches: A Systematic Review.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[43994] doi:10.1186/s12864-022-08647-w [paper, data]

The extensive transgenerational transcriptomic effects of ocean acidification on the olfactory epithelium of a marine fish are associated with a better viral resistance.

Journal: BMC genomics

Status: data only, 1 dataset cited

[43995] doi:10.1186/s13024-022-00548-6 [paper, data]

Microbial-derived metabolites as a risk factor of age-related cognitive decline and dementia.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[43996] doi:10.1186/s13041-022-00941-8 [paper, data]

mTORC1 function in hippocampal parvalbumin interneurons: regulation of firing and long-term potentiation of intrinsic excitability but not long-term contextual fear memory and context discrimination.

Journal: Molecular brain

Status: data only, 1 dataset cited

[43997] doi:10.1186/s13293-022-00442-2 [paper, data]

Sex-specific differences in zebrafish brains.

Journal: Biology of sex differences

Status: data only, 2 datasets cited

[43998] doi:10.1371/journal.pcbi.1010174 [paper, repository]

Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues.

Journal: PLoS computational biology

Authors' code: Ananth-Prakash/Mouse_Rat_DDA_proteomics (no license)

Status: code verified, 6 files readable, 5 matches

[43999] doi:10.1371/journal.pcbi.1010215 [paper, repository]

Metastable spiking networks in the replica-mean-field limit.

Journal: PLoS computational biology

Authors' code: yuluyan/rmf-metastability (GPL-3.0)

Status: code verified, 9 files readable

[44000] doi:10.1371/journal.pcbi.1010250 [paper, repository]

Systematic perturbation of an artificial neural network: A step towards quantifying causal contributions in the brain.

Journal: PLoS computational biology

Authors' code: kuffmode/ANNLesionAnalysis (no license)

Status: code verified, 19 files readable, 3 matches

[44001] doi:10.3389/fgene.2022.851427 [paper, data]

A Novel Extracellular Matrix Gene-Based Prognostic Model to Predict Overall Survive in Patients With Glioblastoma.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[44002] doi:10.3389/fgene.2022.928393 [paper, data]

Retinoic Acid Supplementation Rescues the Social Deficits in <i>Fmr1</i> Knockout Mice.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[44003] doi:10.3389/fnagi.2022.886491 [paper, repository]

The Instrumental Activities of Daily Living in Parkinson's Disease Patients Treated by Subthalamic Deep Brain Stimulation.

Journal: Frontiers in aging neuroscience

Authors' code: josefmana/dbs_postop_iADL (no license)

Status: code verified, 2 files readable, 1 match

[44004] doi:10.3389/fncel.2022.878351 [paper]

Nicotinamide Promotes Formation of Retinal Organoids From Human Pluripotent Stem Cells <i>via</i> Enhanced Neural Cell Fate Commitment.

Journal: Frontiers in cellular neuroscience

Status: data only

[44005] doi:10.3389/fncel.2022.918041 [paper, data]

Single-Nucleus RNA-seq of Normal-Appearing Brain Regions in Relapsing-Remitting vs. Secondary Progressive Multiple Sclerosis: Implications for the Efficacy of Fingolimod.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[44006] doi:10.3389/fninf.2022.843114 [paper, repository]

NeoRS: A Neonatal Resting State fMRI Data Preprocessing Pipeline.

Journal: Frontiers in neuroinformatics

Authors' code: venguix/NeoRS (no license)

Status: code verified, 56 files readable, 14 matches

[44007] doi:10.3389/fninf.2022.882552 [paper, repository]

Scaling and Benchmarking an Evolutionary Algorithm for Constructing Biophysical Neuronal Models.

Journal: Frontiers in neuroinformatics

Authors' code: BlueBrain/BluePyOpt (GPL-3.0), BlueBrain/eFEL (GPL-3.0), AllenInstitute/ipfx (BSD-2-Clause), roybens/NeuroGPU (MIT), BlueBrain/CoreNeuron (BSD-3-Clause), xanderladd/benchmarking_examples (no license), xanderladd/EA_benchmarking (no license)

Status: code verified, 2,595 files readable, 6 matches

[44008] doi:10.3389/fnins.2022.872101 [paper, data]

Interpersonal Family Dynamics Relate to Hippocampal CA Subfield Structure.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[44009] doi:10.3389/fnmol.2022.888351 [paper]

Premature Neural Progenitor Cell Differentiation Into Astrocytes in Retinoic Acid-Induced Spina Bifida Rat Model.

Journal: Frontiers in molecular neuroscience

Status: data only

[44010] doi:10.3389/fphys.2022.931094 [paper, data]

Post-Ganglionic Sympathetic Neurons can Directly Sense Raised Extracellular Na&lt;sup&gt;+&lt;/sup&gt; via SCN7a/Na&lt;sub&gt;x&lt;/sub&gt;.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[44011] doi:10.3390/brainsci12060797 [paper, repository]

SwinBTS: A Method for 3D Multimodal Brain Tumor Segmentation Using Swin Transformer.

Journal: Brain sciences

Authors' code: langwangdezhexue/Swin_BTS (no license)

Status: dead link

[44012] doi:10.7554/elife.74159 [paper, repository]

Convergent mosaic brain evolution is associated with the evolution of novel electrosensory systems in teleost fishes.

Journal: eLife

Authors' code: Zenodo 5538571 (MIT), Zenodo 5538572 (MIT)

Status: code verified, 24 files readable, 13 matches

Thursday, 16 June 2022 (33 papers)

[44013] doi:10.1007/s11682-022-00690-1 [paper, data]

Microstructural white matter alterations associated with migraine headaches: a systematic review of diffusion tensor imaging studies.

Journal: Brain imaging and behavior

Status: data only, 1 dataset cited

[44014] doi:10.1016/j.bbi.2022.06.010 [paper, repository]

Attenuated transcriptional response to pro-inflammatory cytokines in schizophrenia hiPSC-derived neural progenitor cells.

Journal: Brain, behavior, and immunity

Authors' code: abhat92/DGE_response_to_cytokines_in_SZ_hiPSC-NPCs (no license)

Status: code verified, 7 files readable, 5 matches

[44015] doi:10.1016/j.jbc.2022.102147 [paper, repository]

Astrocyte ethanol exposure reveals persistent and defined calcium response subtypes and associated gene signatures.

Journal: The Journal of biological chemistry

Authors' code: safisher/ngs (no license)

Status: code verified, 37 files readable, 1 match

[44016] doi:10.1021/acsomega.2c01897 [paper, data]

Network Pharmacology Experiments Show That Emodin Can Exert a Protective Effect on MCAO Rats by Regulating Hif-1α/VEGF-A Signaling.

Journal: ACS omega

Status: data only, 25 datasets cited

[44017] doi:10.1038/s41398-022-01983-1 [paper]

Identifying alcohol misuse biotypes from neural connectivity markers and concurrent genetic associations.

Journal: Translational psychiatry

Status: code on request

[44018] doi:10.1038/s41559-022-01784-1 [paper, repository]

A single-cell transcriptomic atlas tracking the neural basis of division of labour in an ant superorganism.

Journal: Nature ecology & evolution

Authors' code: figshare 16616353 (CC-BY-4.0)

Status: code verified, 1 file readable

[44019] doi:10.1038/s41562-022-01359-x [paper, repository]

Genome-wide association study of musical beat synchronization demonstrates high polygenicity.

Journal: Nature human behaviour

Authors' code: marianiarchou/beat-synchronization-gwas (no license)

Status: code verified, 1 file readable

[44020] doi:10.1038/s41597-022-01401-7 [paper, repository]

A large, curated, open-source stroke neuroimaging dataset to improve lesion segmentation algorithms.

Journal: Scientific data

Authors' code: npnl/atlas (no license), isles-challenge.org/we (no license), npnl/PALS (no license), npnl/isles_2022 (no license)

Status: code verified, 7 files readable, 1 match

[44021] doi:10.1038/s41598-022-12101-y [paper, repository]

Simulating epileptic seizures using the bidomain model.

Journal: Scientific reports

Authors' code: SVMTK/SVMTK (GPL-3.0)

Status: code verified, 58 files readable, 1 match

[44022] doi:10.1038/s41598-022-13693-1 [paper, data]

Single-cell transcriptomic analysis of neuroepithelial cells and other cell types of the gills of zebrafish (Danio rerio) exposed to hypoxia.

Journal: Scientific reports

Status: data only, 1 dataset cited

[44023] doi:10.1038/s41598-022-14221-x [paper, repository]

Evidence for non-selective response inhibition in uncertain contexts revealed by combined meta-analysis and Bayesian analysis of fMRI data.

Journal: Scientific reports

Authors' code: Masharipov/Bayesian_inference (GPL-3.0)

Status: code verified, 11 files readable, 2 matches

[44024] doi:10.1038/s42003-022-03547-x [paper, data]

An investigation of the cognitive and neural correlates of semantic memory search related to creative ability.

Journal: Communications biology

Status: code on request, 1 dataset cited

[44025] doi:10.1093/texcom/tgac024 [paper, repository]

Brain morphometric similarity and flexibility.

Journal: Cerebral cortex communications

Authors' code: surfer.nmr.mgh.harvard.edu (no license)

Status: code verified

[44026] doi:10.1117/1.nph.9.4.041409 [paper, repository]

Advances in computer-generated holography for targeted neuronal modulation.

Journal: Neurophotonics

Authors' code: UNC-optics/NOVO-CGH (no license), UNC-optics/DeepCGH (other), UNC-optics/DCGH (no license)

Status: code verified, 36 files readable, 6 matches

[44027] doi:10.1155/2022/8342767 [paper, repository]

An Automated Deep Learning Model for the Cerebellum Segmentation from Fetal Brain Images.

Journal: BioMed research international

Authors' code: kaggle.com/gokulappu04/fetalbrains (no license)

Status: dead link

[44028] doi:10.12688/f1000research.121901.3 [paper, data]

Insulin and insulin-like growth factor-I receptors in astrocytes exert different effects on behavior and Alzheimer´s-like pathology.

Journal: F1000Research

Status: data only, 2 datasets cited

[44029] doi:10.1371/journal.pcbi.1010190 [paper, repository]

Orchestrated neuronal migration and cortical folding: A computational and experimental study.

Journal: PLoS computational biology

Authors' code: mholla/neuronal_migration (GPL-3.0)

Status: code verified, 12 files readable, 1 match

[44030] doi:10.1371/journal.pgen.1010230 [paper, data]

Chromatin interaction maps identify Wnt responsive cis-regulatory elements coordinating Paupar-Pax6 expression in neuronal cells.

Journal: PLoS genetics

Status: data only, 11 datasets cited

[44031] doi:10.1371/journal.pgen.1010251 [paper, repository]

EPIC: Inferring relevant cell types for complex traits by integrating genome-wide association studies and single-cell RNA sequencing.

Journal: PLoS genetics

Authors' code: rujinwang/EPIC (no license)

Status: code verified, 15 files readable, 20 matches

[44032] doi:10.1371/journal.pone.0263198 [paper, repository]

Discrimination of edge orientation by bumblebees.

Journal: PloS one

Authors' code: figshare 19723087 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[44033] doi:10.3389/fimmu.2022.882830 [paper, data]

The Antibody Dependant Neurite Outgrowth Modulation Response Involvement in Spinal Cord Injury.

Journal: Frontiers in immunology

Status: data only, 8 datasets cited

[44034] doi:10.3389/fncel.2022.929529 [paper, data]

Glial Cells and Brain Diseases: Inflammasomes as Relevant Pathological Entities.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[44035] doi:10.3389/fnins.2022.892022 [paper, data]

Integrated Analysis of Expression Profile and Potential Pathogenic Mechanism of Temporal Lobe Epilepsy With Hippocampal Sclerosis.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[44036] doi:10.3389/fnmol.2022.872471 [paper, data]

Research Progress of Pyroptosis in Alzheimer's Disease.

Journal: Frontiers in molecular neuroscience

Status: data only, 9 datasets cited

[44037] doi:10.3389/fnsys.2022.919761 [paper, repository]

Cerebellum Involvement in Dystonia During Associative Motor Learning: Insights From a Data-Driven Spiking Network Model.

Journal: Frontiers in systems neuroscience

Authors' code: dbbs-lab/dystonia_ebcc (no license)

Status: code verified, 5 files readable, 2 matches

[44038] doi:10.3389/fphar.2022.873646 [paper, data]

Xiaoyaosan Exerts Antidepressant-Like Effect by Regulating Autophagy Involves the Expression of GLUT4 in the Mice Hypothalamic Neurons.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[44039] doi:10.3389/fphys.2022.933706 [paper, data]

Minocycline Reduces Hypothalamic Microglia Activation and Improves Metabolic Dysfunction in High Fat Diet-Induced Obese Mice.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[44040] doi:10.3390/cells11121939 [paper, repository]

Perturbation of Cortical Excitability in a Conditional Model of PCDH19 Disorder.

Journal: Cells

Authors' code: DidiLamers/PCDH19_ZebraExplore (no license), DidiLamers/PCDH19_CalciumImaging (no license)

Status: code verified, 20 files readable

[44041] doi:10.3390/molecules27123869 [paper, repository]

TNKPVI, a Putative Bioaccessible Pharmacophore of Anti-Inflammatory Potato Patatin-Derived Decapeptide DIKTNKPVIF.

Journal: Molecules (Basel, Switzerland)

Authors' code: dosorio/Peptides (no license)

Status: code verified, 58 files readable, 2 matches

[44042] doi:10.7554/elife.70263 [paper, repository]

Multiple timescales of sensory-evidence accumulation across the dorsal cortex.

Journal: eLife

Authors' code: BrainCOGS/laserGalvoControl (GPL-3.0), BrainCOGS/widefieldImaging (GPL-3.0), BrainCOGS/PintoEtAl2020_sub-trial_inact (no license), sakoay/accumtowerstools (GPL-3.0), BrainCOGS/PintoEtAl2020_subtrial_inact (GPL-3.0)

Status: code verified, 152 files readable, 21 matches

[44043] doi:10.7554/elife.74921 [paper, repository]

Self-organization of in vitro neuronal assemblies drives to complex network topology.

Journal: eLife

Authors' code: code.google.com/p/transfer-entropy-toolbox (no license)

Status: code verified

[44044] doi:10.7554/elife.75463 [paper, repository]

Distinct representation of cue-outcome association by D1 and D2 neurons in the ventral striatum's olfactory tubercle.

Journal: eLife

Authors' code: VicKapoor/Multiphoton-Code (GPL-3.0), Zenodo 6621687 (MIT)

Status: code verified, 22 files readable, 4 matches

[44045] doi:10.7554/elife.77387 [paper, data]

Evolutionary convergence of a neural mechanism in the cavefish lateral line system.

Journal: eLife

Status: data only, 4 datasets cited

Wednesday, 15 June 2022 (21 papers)

[44046] doi:10.1007/s11095-022-03285-z [paper, data]

Pharmacokinetics and Pharmacodynamic Effect of a Blood-Brain Barrier-Crossing Fusion Protein Therapeutic for Alzheimer's Disease in Rat and Dog.

Journal: Pharmaceutical research

Status: data only, 1 dataset cited

[44047] doi:10.1007/s11682-022-00651-8 [paper]

Temporal Dynamics of Resting-state Functional Networks and Cognitive Functioning following Systemic Treatment for Breast Cancer.

Journal: Brain imaging and behavior

Status: code on request

[44048] doi:10.1016/j.bpsc.2022.06.002 [paper, repository]

Large-Scale Exploration of Whole-Brain Structural Connectivity in Anorexia Nervosa: Alterations in the Connectivity of Frontal and Subcortical Networks.

Journal: Biological psychiatry. Cognitive neuroscience and neuroimaging

Authors' code: CaitlinLloyd/Anorexia.Nervosa_Tractography (no license)

Status: code verified, 4 files readable, 3 matches

[44049] doi:10.1016/j.clinph.2022.05.017 [paper]

High-density EEG sleep correlates of cognitive and affective impairment at 12-month follow-up after COVID-19.

Journal: Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology

Status: code on request

[44050] doi:10.1016/j.dcn.2022.101123 [paper, repository]

Resting-state functional connectivity identifies individuals and predicts age in 8-to-26-month-olds.

Journal: Developmental cognitive neuroscience

Authors' code: mathworks.com/matlabcentral/fileexchange (no license), DCAN-Labs/dcan-infant-pipeline (BSD-3-Clause), okardan/BCP_Reliability_ID_Age (no license)

Status: code verified, 126 files readable, 13 matches

[44051] doi:10.1016/j.isci.2022.104605 [paper]

Local Drd1-neurons input to subgroups of arcuate AgRP/NPY-neurons.

Journal: iScience

Status: code on request

[44052] doi:10.1038/s41467-022-30961-w [paper, data]

Sex-specific multi-level 3D genome dynamics in the mouse brain.

Journal: Nature communications

Status: data only, 3 datasets cited

[44053] doi:10.1038/s41467-022-31086-w [paper, repository]

Distributed genetic architecture across the hippocampal formation implies common neuropathology across brain disorders.

Journal: Nature communications

Authors' code: precimed/mostest (GPL-3.0), norment/open-science (no license), fuma.ctglab.nl (no license), precimed/pleiofdr (GPL-3.0), bulik/ldsc (GPL-3.0)

Status: code verified, 162 files readable, 2 matches

[44054] doi:10.1038/s41598-022-13589-0 [paper, repository]

Temporal mapping of derived high-frequency gene variants supports the mosaic nature of the evolution of Homo sapiens.

Journal: Scientific reports

Authors' code: AGMAndirko/Temporal-mapping (no license)

Status: code verified, 59 files readable, 4 matches

[44055] doi:10.1084/jem.20211860 [paper, data]

Glucosamine amends CNS pathology in mucopolysaccharidosis IIIC mouse expressing misfolded HGSNAT.

Journal: The Journal of experimental medicine

Status: data only, 1 dataset cited

[44056] doi:10.1098/rsbl.2022.0129 [paper, repository]

Systemic application of the transient receptor potential vanilloid-type 4 antagonist GSK2193874 induces tail vasodilation in a mouse model of thermoregulation.

Journal: Biology letters

Authors' code: doi:10.6084/m9.figshare.c.6026164 (no license)

Status: code found, still to be checked

[44057] doi:10.1126/sciadv.abm7342 [paper, data]

GPR15L is an epithelial inflammation-derived pruritogen.

Journal: Science advances

Status: data only, 1 dataset cited

[44058] doi:10.1186/s12915-022-01336-w [paper, data]

A neuromechanical model for Drosophila larval crawling based on physical measurements.

Journal: BMC biology

Status: data only, 1 dataset cited

[44059] doi:10.1186/s12974-022-02486-y [paper, repository]

Microglial amyloid beta clearance is driven by PIEZO1 channels.

Journal: Journal of neuroinflammation

Authors' code: LucaGiudice/Microglia-AD-PIEZO1 (no license)

Status: code verified, 16 files readable, 5 matches

[44060] doi:10.1186/s12974-022-02514-x [paper, data]

SARS-CoV-2 productively infects human brain microvascular endothelial cells.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[44061] doi:10.1186/s13041-022-00940-9 [paper, data]

Genome-wide translation control analysis of developing human neurons.

Journal: Molecular brain

Status: data only, 4 datasets cited

[44062] doi:10.3390/brainsci12060784 [paper, repository]

Topologic Efficiency Abnormalities of the Connectome in Asymptomatic Patients with Leukoaraiosis.

Journal: Brain sciences

Authors' code: sandywang/GRETNA (GPL-3.0)

Status: code verified, 453 files readable, 6 matches

[44063] doi:10.3390/brainsci12060789 [paper, repository]

Synaptic Dysfunction by Mutations in &lt;i&gt;GRIN2B&lt;/i&gt;: Influence of Triheteromeric NMDA Receptors on Gain-of-Function and Loss-of-Function Mutant Classification.

Journal: Brain sciences

Authors' code: acp29/Elmasri_GRIN2B (GPL-3.0)

Status: code verified, 16 files readable, 15 matches

[44064] doi:10.3390/jcm11123437 [paper, data]

Comprehensive RNA Expression Analysis Revealed Biological Functions of Key Gene Sets and Identified Disease-Associated Cell Types Involved in Rat Traumatic Brain Injury.

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

[44065] doi:10.7554/elife.66388 [paper, repository]

Lessons from a catalogue of 6674 brain recordings.

Journal: eLife

Authors' code: OSF 2sncj (no license), JohnTyCa/The-SPN-Catalogue (CC0-1.0)

Status: code verified, 1,132 files readable

[44066] doi:10.7554/elife.72135 [paper, repository]

Age-associated changes to neuronal dynamics involve a disruption of excitatory/inhibitory balance in &lt;i&gt;C. elegans&lt;/i&gt;.

Journal: eLife

Authors' code: supp:PMC9273219/elife-72135-code1.zip (no license)

Status: code verified, 15 files readable

Tuesday, 14 June 2022 (38 papers)

[44067] doi:10.1016/j.bjorl.2022.06.002 [paper, data]

Melatonin prevents age-related hearing loss in the murin experimental model.

Journal: Brazilian journal of otorhinolaryngology

Status: data only, 1 dataset cited

[44068] doi:10.1016/j.isci.2022.104595 [paper]

Role of the DUB enzyme USP7 in dendritic arborization, neuronal migration, and autistic-like behaviors in mice.

Journal: iScience

Status: code on request

[44069] doi:10.1016/j.isci.2022.104604 [paper]

Slitrk2 deficiency causes hyperactivity with altered vestibular function and serotonergic dysregulation.

Journal: iScience

Status: code on request

[44070] doi:10.1016/j.neuroimage.2022.119385 [paper, repository]

Causal inference on neuroimaging data with Mendelian randomisation.

Journal: NeuroImage

Authors' code: gqi/MRMix (no license), WSpiller/MVMR (GPL), qingyuanzhao/mr.raps (no license), WSpiller/RadialMR (GPL-3.0), git.fmrib.ox.ac.uk/ndcn1032/mrneuroimg (no license)

Status: code verified, 49 files readable, 9 matches

[44071] doi:10.1016/j.neuron.2022.05.017 [paper, repository]

Sodium-calcium exchanger-3 regulates pain "wind-up": From human psychophysics to spinal mechanisms.

Journal: Neuron

Authors' code: Zenodo 6529629 (other-open)

Status: code verified

[44072] doi:10.1038/s41380-022-01632-5 [paper]

Selective visuoconstructional impairment following mild COVID-19 with inflammatory and neuroimaging correlation findings.

Journal: Molecular psychiatry

Status: code on request

[44073] doi:10.1038/s41380-022-01640-5 [paper]

Aberrant impulse control circuitry in obesity.

Journal: Molecular psychiatry

Status: code on request

[44074] doi:10.1038/s41467-022-30977-2 [paper, repository]

Morphological pseudotime ordering and fate mapping reveal diversification of cerebellar inhibitory interneurons.

Journal: Nature communications

Authors' code: wang-wendyy/morphological_pseudotime (BSD-2-Clause)

Status: code verified, 4 files readable, 1 match

[44075] doi:10.1038/s41467-022-31072-2 [paper, repository]

Brain-wide reconstruction of inhibitory circuits after traumatic brain injury.

Journal: Nature communications

Authors' code: roberthuntlab/clearedbrainanalysis (MIT)

Status: code verified, 10 files readable, 5 matches

[44076] doi:10.1038/s41531-022-00340-9 [paper, data]

Angiotensin type-1 receptor and ACE2 autoantibodies in Parkinson´s disease.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[44077] doi:10.1038/s41597-022-01386-3 [paper, repository]

A longitudinal multi-scanner multimodal human neuroimaging dataset.

Journal: Scientific data

Authors' code: TIGRLab/human_phantoms_plots (no license)

Status: code verified, 3 files readable

[44078] doi:10.1038/s41597-022-01409-z [paper, repository]

The two decades brainclinics research archive for insights in neurophysiology (TDBRAIN) database.

Journal: Scientific data

Authors' code: brainclinics.com/resources (no license), BCD-gitprojects/TDBRAIN (no license)

Status: code verified

[44079] doi:10.1038/s41597-022-01415-1 [paper, repository]

Enhancing the REMBRANDT MRI collection with expert segmentation labels and quantitative radiomic features.

Journal: Scientific data

Authors' code: ICBI/rembrandt-mri (no license)

Status: code verified, 3 files readable

[44080] doi:10.1038/s41598-022-14565-4 [paper, data]

Author Correction: Characterising the unity and diversity of executive functions in a within-subject fMRI study.

Journal: Scientific reports

Status: data only, 1 dataset cited

[44081] doi:10.1073/pnas.2202491119 [paper, repository]

Multilevel atlas comparisons reveal divergent evolution of the primate brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: MarieGarin/PIDM (MIT)

Status: code verified, 4 files readable

[44082] doi:10.1093/braincomms/fcac147 [paper, repository]

The cognitive and neural underpinnings of discourse coherence in post-stroke aphasia.

Journal: Brain communications

Authors' code: OSF 8atfn (no license)

Status: code found, still to be checked

[44083] doi:10.1155/2022/8432352 [paper, data]

Investigating the <i>AC079305/DUSP1</i> Axis as Oxidative Stress-Related Signatures and Immune Infiltration Characteristics in Ischemic Stroke.

Journal: Oxidative medicine and cellular longevity

Status: data only, 1 dataset cited

[44084] doi:10.1159/000525509 [paper, data]

Clinical Characteristics and Treatment Outcome of Central Nervous System Nocardiosis: A Systematic Review of Reported Cases.

Journal: Medical principles and practice : international journal of the Kuwait University, Health Science Centre

Status: data only, 1 dataset cited

[44085] doi:10.1186/s12916-022-02395-0 [paper, repository]

International surveillance study in acute spinal cord injury confirms viability of multinational clinical trials.

Journal: BMC medicine

Authors' code: jutzca/Neurosurveillance (BSD-3-Clause), jutzca/SCI_Neurological_Recovery (no license)

Status: code verified, 36 files readable, 8 matches

[44086] doi:10.1186/s13041-022-00936-5 [paper, data]

Impaired mitochondrial accumulation and Lewy pathology in neuron-specific FBXO7-deficient mice.

Journal: Molecular brain

Status: data only, 5 datasets cited

[44087] doi:10.1371/journal.pbio.3001666 [paper, repository]

Gamma oscillations in primate primary visual cortex are severely attenuated by small stimulus discontinuities.

Journal: PLoS biology

Authors' code: Zenodo 6523772 (other-open)

Status: code verified, 1 file readable

[44088] doi:10.14440/jbm.2022.386 [paper, repository]

An experimental method for evoking and characterizing dynamic color patterning of cuttlefish during prey capture.

Journal: Journal of biological methods

Authors' code: everymind/CuttleShuttle_Paper (MIT)

Status: code verified, 6 files readable, 2 matches

[44089] doi:10.3389/fgene.2022.926049 [paper, repository]

Ontology Specific Alternative Splicing Changes in Alzheimer's Disease.

Journal: Frontiers in genetics

Authors' code: tjhwangxiong/AD-GSE132177-Alternative-Splicing-pipeline (no license)

Status: empty repository, 1 file readable

[44090] doi:10.3389/fimmu.2022.897959 [paper, repository]

Transformer-Based Deep-Learning Algorithm for Discriminating Demyelinating Diseases of the Central Nervous System With Neuroimaging.

Journal: Frontiers in immunology

Authors' code: TXVision/Demyelinating_Diseases_Classification_MRI (MIT)

Status: code verified, 10 files readable, 2 matches

[44091] doi:10.3389/fnagi.2022.866230 [paper, repository]

Automated Classification of Mild Cognitive Impairment by Machine Learning With Hippocampus-Related White Matter Network.

Journal: Frontiers in aging neuroscience

Authors' code: ThreePoundUniverse/MCI-network-classification (no license)

Status: code verified, 2 files readable

[44092] doi:10.3389/fneur.2022.839784 [paper, repository]

Radiomics Features on Computed Tomography Combined With Clinical-Radiological Factors Predicting Progressive Hemorrhage of Cerebral Contusion.

Journal: Frontiers in neurology

Authors' code: pyradiomics.readthedocs.io (no license)

Status: code verified

[44093] doi:10.3389/fninf.2022.883223 [paper, repository]

A Robust Modular Automated Neuroimaging Pipeline for Model Inputs to TheVirtualBrain.

Journal: Frontiers in neuroinformatics

Authors' code: McIntosh-Lab/tvb-ukbb (other)

Status: code verified, 143 files readable, 11 matches

[44094] doi:10.3389/fnins.2022.826105 [paper, repository]

Syllable-Initial Phonemes Affect Neural Entrainment to Consonant-Vowel Syllables.

Journal: Frontiers in neuroscience

Authors' code: phonemes-and-speech-entrainment/cv_syllables (Apache-2.0)

Status: code verified, 24 files readable, 1 match

[44095] doi:10.3389/fnins.2022.855582 [paper, repository]

Effects of an Oral Contraceptive on Dynamic Brain States and Network Modularity in a Serial Single-Subject Study.

Journal: Frontiers in neuroscience

Authors' code: anders-s-olsen/28andme (no license)

Status: dead link

[44096] doi:10.3389/fnins.2022.908650 [paper, repository]

Alzheimer's Disease-Related Genes Identified by Linking Spatial Patterns of Pathology and Gene Expression.

Journal: Frontiers in neuroscience

Authors' code: chrisgorgo/alleninf (BSD-3-Clause)

Status: code verified, 10 files readable, 2 matches

[44097] doi:10.3389/fnmol.2022.894230 [paper, data]

Aging-Dependent Altered Transcriptional Programs Underlie Activity Impairments in Human C9orf72-Mutant Motor Neurons.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[44098] doi:10.3389/fradi.2022.929533 [paper, repository]

A Beginner's Guide to Arterial Spin Labeling (ASL) Image Processing.

Journal: Frontiers in radiology

Authors' code: MauricePasternak/ExploreASL_GUI (LGPL-3.0)

Status: code verified, 30 files readable, 4 matches

[44099] doi:10.3390/brainsci12060778 [paper, data]

EEG Classification of Normal and Alcoholic by Deep Learning.

Journal: Brain sciences

Status: data only, 1 dataset cited

[44100] doi:10.3390/brainsci12060780 [paper, repository]

CircXPO5 Plays a Neuroprotective Function in the Lateral Geniculate Nucleus of Glaucoma by Regulating GRIN2A.

Journal: Brain sciences

Authors' code: code.google.com/p/acfs (no license)

Status: code verified

[44101] doi:10.3390/ijms23126615 [paper, data]

Monte Carlo Models for Sub-Chronic Repeated-Dose Toxicity: Systemic and Organ-Specific Toxicity.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[44102] doi:10.3390/nu14122464 [paper, data]

Effects of Diastolic Blood Pressure on Brain Structures and Cognitive Functions in Middle and Old Ages: Longitudinal Analyses.

Journal: Nutrients

Status: code on request, 1 dataset cited

[44103] doi:10.7554/elife.76391 [paper, repository]

Elevated brain-derived cell-free DNA among patients with first psychotic episode - a proof-of-concept study.

Journal: eLife

Authors' code: Joshmoss11/btseq (no license)

Status: code verified, 5 files readable

[44104] doi:10.7554/elife.79135 [paper, repository]

Functional abnormalities in the cerebello-thalamic pathways in a mouse model of DYT25 dystonia.

Journal: eLife

Authors' code: teamnbc/GNAL2022 (no license)

Status: dead link

Monday, 13 June 2022 (24 papers)

[44105] doi:10.1002/advs.202201212 [paper, repository]

Multi-Omics-Based Autophagy-Related Untypical Subtypes in Patients with Cerebral Amyloid Pathology.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: bioFAM/MOFA2 (LGPL-3.0), jcparkgithub/multiomics_for_mtpad_mipad (no license)

Status: code verified, 53 files readable, 7 matches

[44106] doi:10.1016/j.cell.2022.06.008 [paper, repository]

Mild respiratory COVID can cause multi-lineage neural cell and myelin dysregulation.

Journal: Cell

Authors' code: hms-dbmi/UpSetR (other), liddelowlab/Mild_COVID_Microglia-Cell_2022 (no license)

Status: code verified, 33 files readable, 6 matches

[44107] doi:10.1016/j.neuron.2022.05.016 [paper]

GluN3A excitatory glycine receptors control adult cortical and amygdalar circuits.

Journal: Neuron

Status: code on request

[44108] doi:10.1016/j.xcrm.2022.100654 [paper]

Hypoxanthine is a pharmacodynamic marker of ischemic brain edema modified by glibenclamide.

Journal: Cell reports. Medicine

Status: code on request

[44109] doi:10.1038/s41467-022-31041-9 [paper, repository]

Linking individual differences in human primary visual cortex to contrast sensitivity around the visual field.

Journal: Nature communications

Authors' code: OSF de7zg (no license), WinawerLab/vistadisp (no license), Zenodo 6456310 (other-open)

Status: code verified, 509 files readable, 6 matches

[44110] doi:10.1038/s41556-022-00929-5 [paper, repository]

Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells.

Journal: Nature cell biology

Authors' code: daniel-rosebrock/BrainOrganoids (no license)

Status: code verified, 12 files readable, 23 matches

[44111] doi:10.1038/s41591-022-01834-y [paper, repository]

Brain lesions disrupting addiction map to a common human brain circuit.

Journal: Nature medicine

Authors' code: neurolabusc/NiiStat (GPL-2.0), lead-dbs.org (no license), Zenodo 4905738 (other-open), bchcohenlab/bids_to_cbig_fmri_preproc2016 (no license)

Status: code verified, 90 files readable, 1 match

[44112] doi:10.1038/s41597-022-01398-z [paper, repository]

Optimising the classification of feature-based attention in frequency-tagged electroencephalography data.

Journal: Scientific data

Authors' code: OSF c689u (no license), air2310/FeatAttnClassification (CC0-1.0)

Status: code verified, 68 files readable, 17 matches

[44113] doi:10.1098/rstb.2021.0209 [paper, repository]

Genomic architecture and functional effects of potential human inversion supergenes.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.5986112 (no license)

Status: code found, still to be checked

[44114] doi:10.1186/s12885-022-09707-w [paper, data]

Development and validation of a novel mitophagy-related gene prognostic signature for glioblastoma multiforme.

Journal: BMC cancer

Status: data only, 2 datasets cited

[44115] doi:10.1186/s12906-022-03635-9 [paper, data]

The protective effects of hyperoside on Ang II-mediated apoptosis of bEnd.3 cells and injury of blood-brain barrier model in vitro.

Journal: BMC complementary medicine and therapies

Status: data only, 1 dataset cited

[44116] doi:10.1186/s13036-022-00293-w [paper, repository]

Organotypic whole hemisphere brain slice models to study the effects of donor age and oxygen-glucose-deprivation on the extracellular properties of cortical and striatal tissue.

Journal: Journal of biological engineering

Authors' code: Nance-Lab/diff_classifier (MIT)

Status: code verified, 25 files readable, 1 match

[44117] doi:10.1186/s13073-022-01064-4 [paper, data]

Gain and loss of TASK3 channel function and its regulation by novel variation cause KCNK9 imprinting syndrome.

Journal: Genome medicine

Status: data only, 1 dataset cited

[44118] doi:10.1371/journal.pbio.3001677 [paper, repository]

Context-dependent reversal of odorant preference is driven by inversion of the response in a single sensory neuron type.

Journal: PLoS biology

Authors' code: Zenodo 6537728 (other-open)

Status: code verified

[44119] doi:10.1371/journal.pcbi.1009717 [paper, repository]

Computational simulations and Ca2+ imaging reveal that slow synaptic depolarizations (slow EPSPs) inhibit fast EPSP evoked action potentials for most of their time course in enteric neurons.

Journal: PLoS computational biology

Authors' code: ParvinZE/Slow-EPSPs (no license)

Status: code verified, 8 files readable

[44120] doi:10.1371/journal.pcbi.1009846 [paper, repository]

cytoNet: Spatiotemporal network analysis of cell communities.

Journal: PLoS computational biology

Authors' code: qutublab/cytoNet (no license)

Status: code verified, 149 files readable, 11 matches

[44121] doi:10.1371/journal.pcbi.1010129 [paper, repository]

HiCImpute: A Bayesian hierarchical model for identifying structural zeros and enhancing single cell Hi-C data.

Journal: PLoS computational biology

Authors' code: dixonlab/scm3C-seq (no license), sl-lin/HiCImpute (no license)

Status: code verified, 33 files readable, 4 matches

[44122] doi:10.1371/journal.ppat.1009946 [paper, repository]

Long-term persistence of viral RNA and inflammation in the CNS of macaques exposed to aerosolized Venezuelan equine encephalitis virus.

Journal: PLoS pathogens

Authors' code: ReedLabatPitt/Reed-Lab-Code-Library (GPL-3.0)

Status: code verified, 6 files readable, 3 matches

[44123] doi:10.15252/embj.2021108918 [paper, data]

A multifunctional locus controls motor neuron differentiation through short and long noncoding RNAs.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[44124] doi:10.3389/fninf.2022.851024 [paper, repository]

From End to End: Gaining, Sorting, and Employing High-Density Neural Single Unit Recordings.

Journal: Frontiers in neuroinformatics

Authors' code: cortex-lab/phy (BSD-3-Clause), tridesclous/tridesclous (MIT), spyke/spyke (other)

Status: code verified, 361 files readable, 6 matches

[44125] doi:10.3389/fnmol.2022.913990 [paper, repository]

The Human <i>SCN9A</i> ^{<i>R</i>185<i>H</i>} Point Mutation Induces Pain Hypersensitivity and Spontaneous Pain in Mice.

Journal: Frontiers in molecular neuroscience

Authors' code: munizmom (no license)

Status: code verified

[44126] doi:10.3389/fnsys.2022.865453 [paper, data]

Spatiotemporal Signatures of Surprise Captured by Magnetoencephalography.

Journal: Frontiers in systems neuroscience

Status: data only, 1 dataset cited

[44127] doi:10.3389/fphar.2022.872645 [paper, data]

Functional Characterization of Two Variants at the Intron 6-Exon 7 Boundary of the KCNQ2 Potassium Channel Gene Causing Distinct Epileptic Phenotypes.

Journal: Frontiers in pharmacology

Status: data only, 2 datasets cited

[44128] doi:10.3389/fphys.2022.886298 [paper, repository]

Impact of Chronic Prenatal Stress on Maternal Neuroendocrine Function and Embryo and Placenta Development During Early-to-Mid-Pregnancy in Mice.

Journal: Frontiers in physiology

Authors' code: Kriegsfeld-Lab/Placenta-Morphology-Analysis-2021 (MIT)

Status: code verified, 3 files readable

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.