Every paper, by date: page 49

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 49 of 200: 20 November 2025 to 14 November 2025.

Thursday, 20 November 2025 (62 papers, 36 on this page)

[10753] doi:10.1038/s41598-025-24996-4 [paper, data]

Earlier prediction of Parkinson's disease using cross non-decimated wavelet transform and machine learning algorithm.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10754] doi:10.1038/s42003-025-08805-2 [paper, repository]

Single cell long read whole genome sequencing reveals somatic transposon activity in human brain.

Journal: Communications biology

Authors' code: michalizydo/scONT (MIT), Zenodo 14194549 (CC-BY-4.0)

Status: code verified, 86 files readable, 2 matches

[10755] doi:10.1038/s42003-025-08956-2 [paper]

Rapid switching of vestibulo-motor pathways through voluntary eyelid closure in primates.

Journal: Communications biology

Status: code on request

[10756] doi:10.1038/s42003-025-08963-3 [paper, repository]

Polarized ATP synthase in synaptic mitochondria induced by learning and plasticity signals.

Journal: Communications biology

Authors' code: yihucau/cb_2025_code (no license)

Status: code verified, 3 files readable, 1 match

[10757] doi:10.1038/s42003-025-09193-3 [paper]

Prefrontal oxytocin receptor positive cells mediate stress-induced anxiety in tuberous sclerosis complex.

Journal: Communications biology

Status: code on request

[10758] doi:10.1038/s43856-025-01167-0 [paper, repository]

Personalized neurometabolic signature predicts seizure outcomes of laser ablation in mesial temporal lobe epilepsy.

Journal: Communications medicine

Authors' code: EpiNeuroSurg/pNMS (no license), Zenodo 17042331 (CC-BY-4.0)

Status: code verified, 26 files readable, 3 matches

[10759] doi:10.1038/s43856-025-01177-y [paper, repository]

Magnetic susceptibility properties of tumor-associated cells imaged by MRI reveal glioblastoma infiltration in the edema region.

Journal: Communications medicine

Authors' code: FAIR-Unipd/dsc-mri-toolbox (MIT)

Status: code verified, 31 files readable, 3 matches

[10760] doi:10.1038/s44172-025-00525-z [paper, repository]

Validation of an electroencephalography data assimilation-based computational approach for estimating cortical excitation-inhibition balance.

Journal: Communications engineering

Authors' code: myGit-YokoyamaHiroshi/EEG_vbcETKF_mEI_est (no license)

Status: code verified, 14 files readable, 4 matches

[10761] doi:10.1038/s44318-025-00624-9 [paper, repository]

Direct and indirect neurogenesis from radial glial progenitor cell clones in the mouse neocortex.

Journal: The EMBO journal

Authors' code: dan20231213/simulated_lineages (no license), dan20231213/lineage_tree_construction (no license)

Status: code verified, 4 files readable

[10762] doi:10.1038/s44319-025-00604-4 [paper, data]

BACE1 regulates sleep-wake cycle through both enzymatic and non-enzymatic actions.

Journal: EMBO reports

Status: data only, 2 datasets cited

[10763] doi:10.1073/pnas.2505323122 [paper, repository]

Creatine kinase imaging (CKI) for in vivo whole-brain mapping of creatine kinase reaction kinetics.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: MRSEPFL/CKI (no license)

Status: code verified, 3 files readable

[10764] doi:10.1073/pnas.2508836122 [paper, repository]

Autism-associated <i>Scn2a</i> haploinsufficiency disrupts in vivo dendritic signaling and impairs flexible decision-making.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Kwan-Lab/wu2025 (GPL-3.0), Kwan-Lab/behavioral-rigs (no license)

Status: code verified, 1,026 files readable, 4 matches

[10765] doi:10.1117/1.nph.13.s1.s17801 [paper, repository]

HR<i>func</i>: a tool for modeling hemodynamic response variability in fNIRS.

Journal: Neurophotonics

Authors' code: dennys246/hrfunc (BSD-3-Clause)

Status: code verified, 111 files readable, 15 matches

[10766] doi:10.1162/imag.a.1021 [paper, repository]

Neural signatures of automatic letter-speech sound integration in literate adults.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: weiyongxu/AVTest (no license)

Status: code verified, 23 files readable, 7 matches

[10767] doi:10.1162/imag.a.1026 [paper, repository]

Increased intra-thalamic and thalamo-cortical functional connections during human REM sleep: Insights from a two-night EEG-fMRI study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: nilsyang/Codes (no license)

Status: code verified, 10 files readable, 3 matches

[10768] doi:10.1162/imag.a.1035 [paper, repository]

Advanced diffusion imaging in grey matter reflects individual differences in cognitive ability in older adults.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: StarkLabUCI/greymatter_diffusion (no license)

Status: code verified, 6 files readable, 2 matches

[10769] doi:10.1162/netn.a.32 [paper, repository]

A lightweight, end-to-end explainable, and generalized attention-based graph neural network model trained on high-order spatiotemporal organization of dynamic functional connectivity to classify autistics from typically developing.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: dynamicdip (no license)

Status: code verified

[10770] doi:10.1162/netn.a.34 [paper, repository]

Revealing brain network dynamics during the emotional state of suspense using TDA.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: aaolaveh/TDA_suspense (MIT)

Status: code verified, 26 files readable, 2 matches

[10771] doi:10.1162/netn.a.35 [paper, repository]

Coming up short: Generative network models fail to accurately capture long-range connectivity.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: StuartJO/ComingUpShort (no license)

Status: code verified, 70 files readable, 9 matches

[10772] doi:10.1162/netn.a.36 [paper, repository]

Network control theory applied to the human connectome: A study on variability and discriminability of fMRI connectomic features under normal and defective sensorineural conditions.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: brain-intelligence-lab/functional_controllability (MIT)

Status: code verified, 21 files readable, 2 matches

[10773] doi:10.1162/netn.a.37 [paper]

A prior-knowledge-guided feature selection method and its application to biomarker identification of schizophrenia.

Journal: Network neuroscience (Cambridge, Mass.)

Status: code on request

[10774] doi:10.1186/s12883-025-04464-2 [paper]

Development and validation of a nomogram for identifying cognitive impairment in patients with leukoaraiosis.

Journal: BMC neurology

Status: code on request

[10775] doi:10.1186/s12888-025-07544-2 [paper, repository]

Cortical morphometric inverse divergence alterations in first-episode, treatment-naïve COVID-19 secondary depression correlate with transcriptional signatures.

Journal: BMC psychiatry

Authors' code: isebenius/MIND (no license), rmarkello/abagen (BSD-3-Clause), SarahMorgan/Morphometric_Similarity_SZ (MIT)

Status: code verified, 64 files readable, 4 matches

[10776] doi:10.1186/s12987-025-00731-z [paper, repository]

Translational biomarkers of hypoxic brain injury uncovered in CSF secreting human choroid plexus organoids.

Journal: Fluids and barriers of the CNS

Authors' code: iontorrent/TMAP (other)

Status: code verified, 180 files readable

[10777] doi:10.1186/s13059-025-03847-5 [paper, repository]

Cell type-specific inference from bulk RNA-sequencing data by integrating single-cell reference profiles via EPIC-unmix.

Journal: Genome biology

Authors' code: quansun98/EPICunmix (GPL-3.0), Zenodo 17420781 (MIT)

Status: code verified, 10 files readable, 1 match

[10778] doi:10.1242/bio.062280 [paper, data]

Differential activity of transcription factors and neuronal effectors during the development of pikeperch brain.

Journal: Biology open

Status: data only, 1 dataset cited

[10779] doi:10.1371/journal.pcbi.1013712 [paper, repository]

How cortico-basal ganglia-thalamic subnetworks can shift decision policies to increase reward rate.

Journal: PLoS computational biology

Authors' code: coaxlab/cbgtpy (no license)

Status: code verified, 33 files readable, 4 matches

[10780] doi:10.1371/journal.pone.0333822 [paper, repository]

Cross-modal fusion of brain imaging and clinical data for Parkinson's disease progression prediction.

Journal: PloS one

Authors' code: doi:10.5061/dryad.63xsj3vdv (no license), datadryad.org/share/zvycwl-sd-aptc7iwaxsljjxa1w53rjxr_c1xpykaxm (no license)

Status: dead link

[10781] doi:10.3389/fcvm.2025.1709175 [paper, repository]

Current trends in virtual electrophysiology use for risk stratification and treatment of ventricular arrhythmias.

Journal: Frontiers in cardiovascular medicine

Authors' code: vildenst/3D-heart-models (no license)

Status: code verified, 2,000 files readable

[10782] doi:10.3389/fninf.2025.1706099 [paper, data]

CNN-based framework for Alzheimer's disease detection from EEG via dynamic mode decomposition.

Journal: Frontiers in neuroinformatics

Status: data only, 2 datasets cited

[10783] doi:10.3389/frai.2025.1676524 [paper, repository]

XAI-BT-EdgeNet: explainable edge-aware deep learning with squeeze-and-excitation for brain tumor detection and prediction.

Journal: Frontiers in artificial intelligence

Authors' code: Ani2014/XAI-BT-EdgeNet (no license)

Status: code verified, 2 files readable, 7 matches

[10784] doi:10.3390/brainsci15111245 [paper, data]

Functional and Structural Connectivity Correlates of Axial Symptom Outcomes After Pallidal Deep Brain Stimulation in Parkinson's Disease.

Journal: Brain sciences

Status: data only, 1 dataset cited

[10785] doi:10.3390/cimb47110967 [paper, data]

Genetic Evidence Prioritizes Neurocognitive Decline as a Causal Driver of Sleep Disturbances: A Multi-Omics Analysis Identifying Causal Genes and Therapeutic Targets.

Journal: Current issues in molecular biology

Status: data only, 1 dataset cited

[10786] doi:10.3390/s25227100 [paper, data]

RecovGait: Occluded Parkinson's Disease Gait Reconstruction Using Unscented Tracking with Gated Initialization Technique.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[10787] doi:10.7554/elife.101513 [paper, repository]

Cholecystokinin modulates age-dependent thalamocortical neuroplasticity.

Journal: eLife

Authors' code: supp:PMC12634044/elife-101513-code1.zip (no license)

Status: code verified, 6 files readable

[10788] doi:10.7554/elife.108282 [paper, repository]

A stochastic RNA editing process targets a select number of sites in individual <i>Drosophila</i> glutamatergic motoneurons.

Journal: eLife

Authors' code: supp:PMC12634045/elife-108282-code1.zip (no license)

Status: code verified, 5 files readable, 5 matches

Wednesday, 19 November 2025 (59 papers)

[10789] doi:10.1002/advs.202509773 [paper, repository]

Morphological and Hyperphosphorylation Transitions of Nanoscale Tau Aggregates in Alzheimer's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: melikelakadamyali/StormAnalysisSoftware (GPL-3.0), LakGroup/ECLiPSE (GPL-3.0)

Status: code verified, 308 files readable, 6 matches

[10790] doi:10.1002/mrm.70174 [paper, repository]

Analytical Dual Flip Angle R1 Calculation Outside the Small-Angle Regime.

Journal: Magnetic resonance in medicine

Authors' code: lukeje/n-contrast-mpm (no license), lukeje/large-angle-paper-scripts (GPL-3.0)

Status: code verified, 65 files readable, 10 matches

[10791] doi:10.1007/s12035-025-05390-7 [paper, data]

Chronic Intermittent Hypoxia Exposure Induces a Unique Microglial Transcriptome in 5XFAD Mice.

Journal: Molecular neurobiology

Status: data only, 2 datasets cited

[10792] doi:10.1016/j.dcn.2025.101645 [paper, repository]

Language exposure predicts infants' neural processing of others' actions based on language group.

Journal: Developmental cognitive neuroscience

Authors' code: OSF y32ub (no license)

Status: code verified, 3 files readable

[10793] doi:10.1016/j.envres.2025.123333 [paper, repository]

Longitudinal associations between air pollution and adolescent gray matter development: Insights from the ABCD study.

Journal: Environmental research

Authors' code: OSF gx64j (no license)

Status: code verified, 4 files readable, 1 match

[10794] doi:10.1016/j.isci.2025.114072 [paper, repository]

Time-warped representational similarity analysis reveals acoustic contributions to musical pleasure are weakly shaped by autonomic neural inputs.

Journal: iScience

Authors' code: Zenodo 591533 (isc-license), librosa/librosa (other)

Status: code verified, 188 files readable, 2 matches

[10795] doi:10.1016/j.isci.2025.114111 [paper]

Noninvasive transcranial brain stimulation for eye diseases and visual dysfunctions: A systematic review of RCTs.

Journal: iScience

Status: code on request

[10796] doi:10.1016/j.isci.2025.114121 [paper, data]

Rapid computation of high-level visual surprise.

Journal: iScience

Status: code on request, 2 datasets cited

[10797] doi:10.1016/j.isci.2025.114130 [paper, data]

Machine learning enhanced noninvasive transcranial stroke detection using a portable eddy current damping sensor.

Journal: iScience

Status: code on request, 1 dataset cited

[10798] doi:10.1016/j.isci.2025.114138 [paper, repository]

Complementary cortical and striatal encoding of locomotor preparation and performance.

Journal: iScience

Authors' code: Zenodo 14969115 (CC-BY-4.0), Zenodo 17527723 (GPL-3.0), cortex-lab/spikes (no license), sotmasman/complementary-ctx-str-encoding (GPL-3.0)

Status: code verified, 249 files readable, 17 matches

[10799] doi:10.1016/j.isci.2025.114141 [paper, repository]

Deep learning-enabled high-performance multiphoton fluorescence vascular imaging using clinically approved fluorescent probes.

Journal: iScience

Authors' code: lhr314/MPFI_vessels_denoising (no license)

Status: code verified, 26 files readable, 5 matches

[10800] doi:10.1016/j.isci.2025.114151 [paper, repository]

Distinct oxytocin populations support seismic social communication and militant behaviors in a naturally solitary wild rodent.

Journal: iScience

Authors' code: Zenodo 17591462 (CC-BY-4.0)

Status: code verified, 46 files readable

[10801] doi:10.1016/j.jneumeth.2025.110628 [paper, data]

Uncertainty in population receptive field estimates revealed by variational qPRF.

Journal: Journal of neuroscience methods

Status: data only, 1 dataset cited

[10802] doi:10.1016/j.neuroimage.2025.121581 [paper, repository]

Myelinated fiber labeling and orientation mapping of the human brain with light-sheet fluorescence microscopy.

Journal: NeuroImage

Authors' code: lens-biophotonics/ZetaStitcher (GPL-3.0), lens-biophotonics/Foa3D (MIT), lens-biophotonics/SPIMlab (other)

Status: code verified, 108 files readable, 11 matches

[10803] doi:10.1016/j.nicl.2025.103912 [paper, data]

Amyloid PET predicts atrophy in older adults without dementia: Results from the AMYPAD Prognostic & Natural History study.

Journal: NeuroImage. Clinical

Status: data only, 2 datasets cited

[10804] doi:10.1016/j.omtn.2025.102779 [paper]

Ineffective behavioral rescue despite partial brain Dp427 restoration by AAV9-U7-mediated exon 51 skipping in <i>mdx52</i> mice.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[10805] doi:10.1016/j.xcrm.2025.102462 [paper]

Ngn2 and Isl1-mediated astrocyte-to-neuron conversion in vivo promotes functional recovery after spinal cord injury.

Journal: Cell reports. Medicine

Status: code on request

[10806] doi:10.1016/j.xpro.2025.104217 [paper, data]

Protocol to study human Kv1.2 potassium channel pathogenic sequence variants using two-electrode voltage-clamp technique.

Journal: STAR protocols

Status: data only, 1 dataset cited

[10807] doi:10.1016/j.ymthe.2025.11.026 [paper]

Haplotype editing with CRISPR-Cas9 as a therapeutic approach for dominant-negative missense mutations in NEFL.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: code on request

[10808] doi:10.1038/s41380-025-03351-z [paper]

Molecular and topographic mapping of antipsychotic effects: a meta-analysis of postsynaptic density proteins in animal models with translational implications.

Journal: Molecular psychiatry

Status: code on request

[10809] doi:10.1038/s41380-025-03367-5 [paper, repository]

Spatiotemporal complexity in the psychotic brain.

Journal: Molecular psychiatry

Authors' code: jlizier/jidt (gpl), MICA-MNI/ENIGMA (BSD-3-Clause)

Status: code verified, 695 files readable, 1 match

[10810] doi:10.1038/s41398-025-03753-1 [paper]

Decreased diffusivity along the perivascular spaces in bipolar disorder: an MRI-based cross-sectional and Mendelian randomization study.

Journal: Translational psychiatry

Status: code on request

[10811] doi:10.1038/s41467-025-65042-1 [paper, repository]

Personalized biomarkers of multiscale functional alterations in temporal lobe epilepsy.

Journal: Nature communications

Authors' code: frantisekvasa/rotate_parcellation (MIT), netneurolab.github.io/netneurotools (no license), cjlin1/libsvm (BSD-2-Clause), MICA-MNI/TLE_rsfmri-deviations (GPL-3.0)

Status: code verified, 80 files readable, 2 matches

[10812] doi:10.1038/s41467-025-65112-4 [paper, data]

Migration of CD8 + TSCM cells into intestine via PPBP-CXCR2 axis increases host stress susceptibility by inhibiting gut microbiome-derived homovanillic acid.

Journal: Nature communications

Status: data only, 2 datasets cited

[10813] doi:10.1038/s41467-025-65238-5 [paper, repository]

Molecularly defined cellular atlas of the entire mouse brain with isotropic single-cell resolution.

Journal: Nature communications

Authors' code: atlas.brainsmatics.cn/micam (no license)

Status: code verified

[10814] doi:10.1038/s41467-025-65628-9 [paper, data]

Non-visual photoreceptive brain specification in sea urchin larvae.

Journal: Nature communications

Status: data only, 1 dataset cited

[10815] doi:10.1038/s41586-025-09748-8 [paper, repository]

Shared and language-specific phonological processing in the human temporal lobe.

Journal: Nature

Authors' code: ChangLabUcsf/BhayaGrossman2025 (no license)

Status: code verified, 190 files readable, 23 matches

[10816] doi:10.1038/s41586-025-09768-4 [paper, repository]

Repulsions instruct synaptic partner matching in an olfactory circuit.

Journal: Nature

Authors' code: ZhuoranLi97/repulsive_interactions (no license)

Status: code verified, 3 files readable, 3 matches

[10817] doi:10.1038/s41586-025-09769-3 [paper, repository]

Rewiring an olfactory circuit by altering cell-surface combinatorial code.

Journal: Nature

Authors' code: Cheng-Lyu/CL_Stanford (no license)

Status: code verified, 10 files readable, 3 matches

[10818] doi:10.1038/s41586-025-09778-2 [paper, repository]

Integrator dynamics in the cortico-basal ganglia loop for flexible motor timing.

Journal: Nature

Authors' code: inagaki-lab/Yang_et_al_2024 (no license), Zenodo 17343841 (CC-BY-4.0)

Status: code verified, 19 files readable, 2 matches

[10819] doi:10.1038/s41597-025-06115-0 [paper, repository]

Mouse Hippocampal Sharp-Wave Ripple Dataset Curated From Public Neuropixels Datasets.

Journal: Scientific data

Authors' code: AngCamp/CampbellMurphy2024 (no license), Zenodo 17138476 (CC-BY-4.0)

Status: code verified, 42 files readable, 29 matches

[10820] doi:10.1038/s41597-025-06131-0 [paper, repository]

A longitudinal MRI dataset of brain metastases with tumor segmentations, clinical & radiomic data.

Journal: Scientific data

Authors' code: InSilicoModellingGroup/pyRadiomicBM (Apache-2.0)

Status: code verified, 3 files readable, 1 match

[10821] doi:10.1038/s41598-025-24215-0 [paper, repository]

Investigation of flow state occurrence during robotic virtual reality operations.

Journal: Scientific reports

Authors' code: OSF zkg2v (no license)

Status: code verified, 8 files readable, 2 matches

[10822] doi:10.1038/s41598-025-24466-x [paper, repository]

Adaptive EEG preprocessing to mitigate electrode shift variability for robust motor imagery classification.

Journal: Scientific reports

Authors' code: braindecode.org/stable/generated (no license), doublex612/code-for-acml](https: (no license)

Status: dead link

[10823] doi:10.1038/s41598-025-24493-8 [paper, data]

A general lightweight image super-resolution with sharpening enhancement and double attention network.

Journal: Scientific reports

Status: data only, 2 datasets cited

[10824] doi:10.1038/s41598-025-24669-2 [paper, data]

Robust missing data reconstruction in schizophrenia using tracking-removed autoencoder with fuzzy confidence integration.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10825] doi:10.1038/s41746-025-02072-5 [paper, repository]

Interpretable Multiomics Models for Predicting Surgical Interventions and Blood Transfusion Requirements in Traumatic Brain Injury.

Journal: NPJ digital medicine

Authors' code: pan.baidu.com/s/1brr3hd4wgwc3lxgr8o8zlw (no license)

Status: code verified

[10826] doi:10.1038/s42003-025-08971-3 [paper, repository]

Probabilistic inference of social presence across brain scales reveals enhanced synaptic efficacy.

Journal: Communications biology

Authors' code: ins-amu/SoFa-PI (no license)

Status: code verified, 18 files readable, 8 matches

[10827] doi:10.1038/s42003-025-08981-1 [paper, repository]

Microstructural maturation of the adult mouse brain.

Journal: Communications biology

Authors' code: cfmm/pipelines/mouse_dmri_MT_dicomTOscalarMaps (no license)

Status: code verified, 25 files readable, 4 matches

[10828] doi:10.1038/s42003-025-09022-7 [paper, repository]

Socioeconomic context influences the heritability of child cortical structure.

Journal: Communications biology

Authors' code: OSF azucp (no license)

Status: empty repository

[10829] doi:10.1038/s43856-025-01196-9 [paper]

Disorder of consciousness rather than complete Locked-In Syndrome for end stage Amyotrophic Lateral Sclerosis: a case series.

Journal: Communications medicine

Status: code on request

[10830] doi:10.1038/s44271-025-00334-2 [paper, repository]

Temporally resolved analyses of aperiodic features track neural dynamics during sleep.

Journal: Communications psychology

Authors' code: mohamedsameen/Aperiodic_sleep (no license)

Status: code verified, 34 files readable, 13 matches

[10831] doi:10.1038/s44319-025-00619-x [paper, repository]

Increased reproducibility of brain organoids through controlled fluid dynamics.

Journal: EMBO reports

Authors' code: ariannaravera/organoids-characterization (other)

Status: code verified, 6 files readable, 5 matches

[10832] doi:10.1038/s44319-025-00644-w [paper]

Activity-dependent extracellular proteolytic cascade cleaves the ECM component brevican to promote structural plasticity.

Journal: EMBO reports

Status: data only

[10833] doi:10.1039/d5ra06959a [paper, data]

Advances in predicting human olfactory perception: from data acquisition to computational models.

Journal: RSC advances

Status: data only, 2 datasets cited

[10834] doi:10.1097/pr9.0000000000001367 [paper, data]

Jun N-terminal kinase's role in neuropathic pain: C-fiber remodeling and growth-associated protein-43 phosphorylation.

Journal: Pain reports

Status: data only, 1 dataset cited

[10835] doi:10.1111/febs.70345 [paper, data]

Multiple cis-regulatory elements collaborate to control mdka expression in telencephalic neural stem cells of adult zebrafish during constitutive and regenerative neurogenesis.

Journal: The FEBS journal

Status: data only, 1 dataset cited

[10836] doi:10.1126/sciadv.adz9283 [paper, repository]

AI-driven discovery of dual antiaging and anti-AD therapeutics via PROTAC target deconvolution of a super-enhancer-regulated axis.

Journal: Science advances

Authors' code: Zenodo 17130515 (CC-BY-4.0), liusai118/MLT (no license)

Status: code verified, 64 files readable, 11 matches

[10837] doi:10.1162/imag.a.1020 [paper, repository]

Evaluating the dependence of ADC-fMRI on haemodynamics in breath-hold and resting-state conditions.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Mic-map/fMRI_timelags (MIT)

Status: code verified, 6 files readable, 1 match

[10838] doi:10.1371/journal.pone.0335541 [paper, repository]

Using machine learning for detection of Parkinson's disease and mild cognitive impairment.

Journal: PloS one

Authors' code: Zenodo 17195713 (CC-BY-4.0)

Status: code verified, 43 files readable

[10839] doi:10.1371/journal.pone.0337403 [paper, repository]

Temporal dynamics of emotional face processing in social anxiety.

Journal: PloS one

Authors' code: OSF uwp7h (no license)

Status: code verified

[10840] doi:10.1523/jneurosci.1035-25.2025 [paper, repository]

Q Neuron-Induced Hypothermia Promotes Functional Recovery and Suppresses Neuroinflammation after Brain Injury.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Yoshimoto-1/program-paper-TBI-in-QIH (no license)

Status: code verified, 8 files readable, 4 matches

[10841] doi:10.1523/jneurosci.1502-25.2025 [paper, repository]

Hippocampal Ripples during Offline Periods Predict Human Motor Sequence Learning.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF 9r8pu (no license)

Status: code found, still to be checked

[10842] doi:10.3389/fmicb.2025.1698639 [paper]

Strain-specific tropism and transcriptional responses of enterovirus D68 infection in human spinal cord organoids.

Journal: Frontiers in microbiology

Status: data only

[10843] doi:10.3389/fneur.2025.1644413 [paper, repository]

Cortical morphometric similarity patterns and molecular signatures across ischemic stroke recovery.

Journal: Frontiers in neurology

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 5 matches

[10844] doi:10.3389/fninf.2025.1679196 [paper, data]

Cross-modal privacy-preserving synthesis and mixture-of-experts ensemble for robust ASD prediction.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[10845] doi:10.3389/fnmol.2025.1628567 [paper, data]

Hypoxic preconditioning increases mitochondrial respiration and H<sub>2</sub>O<sub>2</sub> production.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[10846] doi:10.3390/jimaging11110418 [paper, data]

Deep Learning and Atlas-Based MRI Segmentation Enable Longitudinal Characterization of Healthy Mouse Brain.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[10847] doi:10.3390/s25227067 [paper, data]

Takens-Based Kernel Transfer Entropy Connectivity Network for Motor Imagery Classification.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Tuesday, 18 November 2025 (59 papers)

[10848] doi:10.1002/advs.202508478 [paper, repository]

Neutrophil Extracellular Trap Reprograms Cancer Metabolism to Form a Metastatic Niche Promoting Non-Small Cell Lung Cancer Brain Metastasis.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: drive.google.com/drive/folders (no license)

Status: code verified

[10849] doi:10.1002/advs.202509707 [paper, data]

The Geometry of Layer 2/3 Cortical Sound Processing in Slow Wave Sleep.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[10850] doi:10.1002/jmri.70169 [paper, repository]

T2-Weighted T1 Mapping and Automated Segmentation of CSF: Assessment of Solute Gradients in the Healthy Brain.

Journal: Journal of magnetic resonance imaging : JMRI

Authors' code: pyushkevich/greedy (Apache-2.0), jorgenriseth/grip-mixed (MIT)

Status: code verified, 156 files readable, 2 matches

[10851] doi:10.1016/j.isci.2025.114100 [paper, repository]

Toward neuroimaging-based diagnostic support: a deep learning approach with a closed-loop system for psychiatric classification.

Journal: iScience

Authors' code: phi-group/PhiPipe-release (no license), AIM-Harvard/pyradiomics (BSD-3-Clause), BMEQingfengLi/PHN_Classifier (no license), scikit-learn/scikit-learn (BSD-3-Clause), dmlc/xgboost (Apache-2.0)

Status: code verified, 2,297 files readable, 7 matches

[10852] doi:10.1021/acs.jcim.5c01888 [paper, repository]

CANDID-CNS: AI Unlocks Stereochemistry and Beyond Rule of 5 to Predict CNS Penetration of Small Molecules.

Journal: Journal of chemical information and modeling

Authors' code: pyg-team/pytorch_geometric (MIT), gmum/chienn (MIT), deepmodeling/Uni-Mol (MIT)

Status: code verified, 1,684 files readable, 4 matches

[10853] doi:10.1021/acsomega.5c05266 [paper, repository]

Prior Exercise Attenuates LPS-Induced Neuroinflammation, Dopaminergic Dysfunction, and Fatigue-like Behavior in Mice.

Journal: ACS omega

Authors' code: OSF h372r (no license)

Status: empty repository

[10854] doi:10.1038/s41398-025-03696-7 [paper, repository]

Transcription factor 4 regulates the interhemispheric midline remodeling through neuron-astroglia communications during corpus callosum formation.

Journal: Translational psychiatry

Authors' code: kstreet13/slingshot (no license), theislab/scvelo (BSD-3-Clause)

Status: code verified, 100 files readable, 1 match

[10855] doi:10.1038/s41398-025-03698-5 [paper, repository]

Monocyte inflammation and resilience to Alzheimer's disease: novel genetic risk genes identified by transcriptome-wide association study.

Journal: Translational psychiatry

Authors' code: bushlab-genomics/monocytes_AD_resilience_TWAS (no license)

Status: code verified, 15 files readable, 4 matches

[10856] doi:10.1038/s41398-025-03709-5 [paper, data]

A non-coding RNA risk pathway in schizophrenia: miR-137 enhances the lncRNA GOMAFU through a pathological transcription network.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[10857] doi:10.1038/s41398-025-03724-6 [paper]

Response of iPSC-derived neurons from individuals with treatment-resistant depression to (2 R,6 R)-hydroxynorketamine and reelin: an exploratory study.

Journal: Translational psychiatry

Status: code on request

[10858] doi:10.1038/s41467-025-65039-w [paper, repository]

Cross-modal deep generative models reveal the cortical representation of dancing.

Journal: Nature communications

Authors' code: Stanford-TML/EDGE (MIT), OSF utnmg (no license)

Status: code verified, 39 files readable, 4 matches

[10859] doi:10.1038/s41467-025-65041-2 [paper, repository]

Dynamically shifting from compositional to conjunctive brain representations supports cognitive task learning.

Journal: Nature communications

Authors' code: ColeLab/ColeAnticevicNetPartition (other), ColeLab/CPRO2_learning_release (GPL-3.0)

Status: code verified, 64 files readable, 8 matches

[10860] doi:10.1038/s41467-025-65054-x [paper, repository]

Cross-regional real-time visualization of systemic physiology and dynamics with 3D panoramic photoacoustic computed tomography (3D-PanoPACT).

Journal: Nature communications

Authors' code: figshare 28443374 (CC-BY-4.0)

Status: code verified

[10861] doi:10.1038/s41467-025-65055-w [paper, repository]

Neural-genetic-environmental evidence for a disease factor in mental and physical health multimorbidity.

Journal: Nature communications

Authors' code: ChenJin1110/d-factor-code (MIT), Zenodo 17280644 (MIT)

Status: code verified, 12 files readable, 3 matches

[10862] doi:10.1038/s41467-025-65095-2 [paper, data]

Plexin-B1 safeguards astrocyte agility and glial alignment to facilitate wound corralling and axon pathfinding in mouse spinal cord injury model.

Journal: Nature communications

Status: data only, 1 dataset cited

[10863] doi:10.1038/s41467-025-65179-z [paper, repository]

Prefrontal-bed nucleus of the stria terminalis physiological and neuropsychological biomarkers predict therapeutic outcomes in depression.

Journal: Nature communications

Authors' code: Fallenworm/BNSTDBS (no license), Zenodo 16955219 (CC-BY-4.0)

Status: code verified, 6 files readable, 2 matches

[10864] doi:10.1038/s41467-025-65269-y [paper, data]

DNA replication fork speed acts as a pacer in cortical neurogenesis.

Journal: Nature communications

Status: data only, 1 dataset cited

[10865] doi:10.1038/s41467-025-66017-y [paper, repository]

Positional programs in early murine facial development and their role in human facial shape variability.

Journal: Nature communications

Authors' code: slowkow/harmonypy (GPL-3.0), theislab/cellrank (BSD-3-Clause), craniolab/Positional-programs-in-facial-variability (GPL-3.0)

Status: code verified, 131 files readable, 21 matches

[10866] doi:10.1038/s41467-025-66038-7 [paper, repository]

Controllability changes pain perception by increasing the precision of expectations.

Journal: Nature communications

Authors' code: doi:10.12751/g-node.1qbf71 (no license)

Status: code verified

[10867] doi:10.1038/s41467-025-66057-4 [paper]

Stable intracranial imaging of dura mater-engrafted pancreatic islet cells in awake mice.

Journal: Nature communications

Status: code on request

[10868] doi:10.1038/s41531-025-01170-1 [paper, repository]

Development of convolutional neural networks for automated brain-wide histopathological analysis in mouse models of synucleinopathies.

Journal: NPJ Parkinson's disease

Authors' code: DieterPlessers/Neuro_IHC_analysis (MIT)

Status: code verified, 9 files readable, 2 matches

[10869] doi:10.1038/s41531-025-01172-z [paper]

Construction of a mild cognitive impairment prediction model for Parkinson's disease patients on the basis of multimodal data.

Journal: NPJ Parkinson's disease

Status: code on request

[10870] doi:10.1038/s41539-025-00372-9 [paper, repository]

Neural signals gradually shift towards inferior frontal gyrus and long-term effects following facial imitation-based social learning.

Journal: NPJ science of learning

Authors' code: zhaolab205/Repetitive_imitation_2024 (no license)

Status: code verified, 12 files readable, 1 match

[10871] doi:10.1038/s41593-025-02114-x [paper, repository]

Brain-wide analysis reveals movement encoding structured across and within brain areas.

Journal: Nature neuroscience

Authors' code: druckmann-lab/MapVideoAnalysis (MIT), Zenodo 16740762 (MIT)

Status: code verified, 18 files readable

[10872] doi:10.1038/s41593-025-02116-9 [paper, repository]

Neural basis of concurrent deliberation toward a choice and confidence judgment.

Journal: Nature neuroscience

Authors' code: codeocean:6135339 (no license)

Status: code found, still to be checked

[10873] doi:10.1038/s41597-025-06100-7 [paper, data]

HEFMI-ICH: a hybrid EEG-fNIRS motor imagery dataset for brain-computer interface in intracerebral hemorrhage.

Journal: Scientific data

Status: data only, 3 datasets cited

[10874] doi:10.1038/s41597-025-06110-5 [paper, repository]

Naturalistic fMRI and MEG recordings during viewing of a reality TV show.

Journal: Scientific data

Authors' code: compneurolinglab/baba (no license)

Status: code verified, 7 files readable, 1 match

[10875] doi:10.1038/s41598-025-21967-7 [paper, data]

Neuronal allocation and sparse coding of episodic memories in the human hippocampus.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10876] doi:10.1038/s41598-025-24233-y [paper]

PTPRK promotes resiniferatoxin-induced postherpetic neuralgia via activating DUSP1/p38 MAPK signaling pathway in dorsal root ganglia.

Journal: Scientific reports

Status: data only

[10877] doi:10.1038/s41598-025-24328-6 [paper, data]

Analysis of aperiodic activity in obsessive-compulsive disorder and major depression.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10878] doi:10.1038/s41598-025-28456-x [paper, repository]

Functional PET for mapping metabolic dynamics in Parkinson's disease.

Journal: Scientific reports

Authors' code: ruppertm/fPETDynamics (no license)

Status: code verified

[10879] doi:10.1038/s42003-025-08962-4 [paper, repository]

Transcriptomic divergence of network hubs in the prenatal human brain.

Journal: Communications biology

Authors' code: garedaba/prenatal-hubs (MIT)

Status: code verified, 28 files readable, 7 matches

[10880] doi:10.1038/s42003-025-08992-y [paper, repository]

Depth-variant deconvolution applied to widefield microscopy for rapid large-volume tissue imaging.

Journal: Communications biology

Authors' code: wowdanlee/3D-Widefield-with-ADAPT-3D-and-Huygens (Apache-2.0), Zenodo 17156203 (Apache-2.0)

Status: code verified, 6 files readable

[10881] doi:10.1073/pnas.2504913122 [paper, repository]

Building the connectome of a small brain with a simple stochastic developmental generative model.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: schneidmanlab/BrainBuildingPaper (no license)

Status: code verified, 26 files readable, 4 matches

[10882] doi:10.1073/pnas.2511106122 [paper, data]

Alleviation of negative emotional and pain responses through amygdala-hypothalamic social circuit activation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[10883] doi:10.1093/braincomms/fcaf449 [paper, repository]

Characterizing the onset and progression of Alzheimer's pathologies using amyloid and tau PET imaging and plasma p-tau217.

Journal: Brain communications

Authors' code: Betthauser-Neuro-Lab/SILA-AD-Biomarker (GPL-3.0)

Status: code verified, 11 files readable, 2 matches

[10884] doi:10.1117/1.nph.13.s1.s13006 [paper]

Tone disruptions in Mandarin post-stroke aphasia: an fNIRS study on Broca's area using the auditory oddball paradigm.

Journal: Neurophotonics

Status: code on request

[10885] doi:10.1162/imag.a.1018 [paper, data]

Switching, fast and slow: Deciphering the dynamics of memory search, its brain connectivity patterns, and its role in creativity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[10886] doi:10.1186/s10194-025-02203-z [paper]

Selective loss and transcriptional reprogramming of Nox4<sup>+</sup> GABAergic neurons in the trigeminal nucleus caudalis of NTG-induced chronic migraine model.

Journal: The journal of headache and pain

Status: code on request

[10887] doi:10.1186/s13287-025-04757-w [paper, data]

Reverse translational research of transient magnetic resonance imaging hyperintensity following intracranial stem cell therapy.

Journal: Stem cell research & therapy

Status: data only, 2 datasets cited

[10888] doi:10.1186/s42523-025-00486-w [paper, data]

Microbiota-gut-brain axis in avian parenting: gut microbiome associates with nest-construction behavior and neural gene expression in a songbird.

Journal: Animal microbiome

Status: data only, 1 dataset cited

[10889] doi:10.1371/journal.pbio.3003456 [paper, data]

Eye blinks synchronize with musical beats during music listening.

Journal: PLoS biology

Status: data only, 1 dataset cited

[10890] doi:10.1371/journal.pbio.3003495 [paper, data]

Transient frontopolar cortex stimulation induces prolonged disruption to counterfactual processing.

Journal: PLoS biology

Status: data only, 1 dataset cited

[10891] doi:10.1371/journal.pone.0336476 [paper, repository]

A meaningful prediction of functional decline in amyotrophic lateral sclerosis based on multi-event survival analysis.

Journal: PloS one

Authors' code: thecml/FunctionalALS (MIT)

Status: code verified, 24 files readable, 7 matches

[10892] doi:10.21037/jtd-2025-1224 [paper, data]

Single-cell and spatial transcriptome landscapes reveal the spatial immune defense pattern shared by primary and brain metastatic lung adenocarcinoma.

Journal: Journal of thoracic disease

Status: data only, 1 dataset cited

[10893] doi:10.3389/fnins.2025.1655456 [paper]

Gut microbiota signatures in tuberous sclerosis complex and epilepsy: a pilot study.

Journal: Frontiers in neuroscience

Status: data only

[10894] doi:10.3389/fnins.2025.1672542 [paper, data]

Brain network properties in chronic pain-a systematic review and meta-analysis of graph-based connectivity metrics.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[10895] doi:10.3389/frobt.2025.1656642 [paper, data]

Symbolic feedback for transparent fault anticipation in neuroergonomic brain-machine interfaces.

Journal: Frontiers in robotics and AI

Status: data only, 1 dataset cited

[10896] doi:10.3390/biomedicines13112806 [paper, data]

Immaturity-Dependent Hippocampal Neurogenic Promotion and Fate Shift by Low-Dose Propofol in Neonatal Mice Revealed Through Single-Nuclei RNA-Sequencing.

Journal: Biomedicines

Status: data only, 1 dataset cited

[10897] doi:10.3390/cancers17223691 [paper, data]

Prompt-Driven Multimodal Segmentation with Dynamic Fusion for Adaptive and Robust Medical Imaging with Applications to Cancer Diagnosis.

Journal: Cancers

Status: data only, 2 datasets cited

[10898] doi:10.3390/cimb47110958 [paper, data]

In Silico Characterization of ADAR1: Structure, Dynamics, and Functional Implications.

Journal: Current issues in molecular biology

Status: data only, 1 dataset cited

[10899] doi:10.3390/jcm14228176 [paper, repository]

Cognitive Age Delta as a Marker of Healthy and Pathological Cognitive Aging: The Role of Lifestyle, Cognitive Reserve, and Vascular Risk.

Journal: Journal of clinical medicine

Authors' code: itellaetxe/cognitive_age_delta_jcm (no license)

Status: code verified, 4 files readable, 8 matches

[10900] doi:10.3390/life15111769 [paper, repository]

Network Analysis of Predicted Therapeutic Symptoms in National Health Insurance Herbal Prescriptions.

Journal: Life (Basel, Switzerland)

Authors' code: jds4682/data_for_NHP_paper (no license), Zenodo 17288021 (CC-BY-4.0)

Status: code verified, 8 files readable, 8 matches

[10901] doi:10.3390/s25227036 [paper, data]

Enhancing Signal and Network Integrity: Evaluating BCG Artifact Removal Techniques in Simultaneous EEG-fMRI Data.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[10902] doi:10.7554/elife.101111 [paper, repository]

A deep learning approach for the analysis of birdsong.

Journal: eLife

Authors' code: avn.readthedocs.io (no license), theresekoch/AVN_paper (GPL-3.0), theresekoch/Triplet_loss_model_training (MIT)

Status: code verified, 39 files readable, 30 matches

[10903] doi:10.7554/elife.101790 [paper, repository]

Removal of developmentally regulated microexons has a minimal impact on larval zebrafish brain morphology and function.

Journal: eLife

Authors' code: thymelab/ZebrafishBehavior (MIT), thymelab/downstreamanalysis (MIT)

Status: code verified, 31 files readable, 3 matches

[10904] doi:10.7554/elife.103017 [paper, repository]

Mother-child dyadic interactions shape the developing social brain and Theory of Mind in young children.

Journal: eLife

Authors' code: rfmri.org/dpabi (no license), Zenodo 12730121 (CC-BY-4.0)

Status: code verified

[10905] doi:10.7554/elife.104275 [paper, repository]

Phenotypic impact of individual conserved neuronal microexons and their master regulators in zebrafish.

Journal: eLife

Authors' code: vastgroup/mic-social-behavior-analysis (no license), supp:PMC12626424/elife-104275-code1.zip (no license)

Status: code verified, 28 files readable, 11 matches

[10906] doi:10.7554/elife.107718 [paper, data]

<i>Smed-pou4-2</i> regulates mechanosensory neuron regeneration and function in planarians.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 17 November 2025 (46 papers)

[10907] doi:10.1007/s10916-025-02300-1 [paper, repository]

Diffusion Models for Neuroimaging Data Augmentation: Assessing Realism and Clinical Relevance.

Journal: Journal of medical systems

Authors' code: project-monai/monai (Apache-2.0)

Status: code verified, 1,398 files readable, 3 matches

[10908] doi:10.1007/s12602-025-10811-z [paper, repository]

Oral Administration of Lactiplantibacillus plantarum KBL396 Regulates Serum 5-Hydroxytryptamine and Gut Microbiota: Evidence from a Preclinical Mouse Model and a Randomized Controlled Human Trial.

Journal: Probiotics and antimicrobial proteins

Authors' code: usadellab/Trimmomatic (GPL-3.0)

Status: code verified, 152 files readable

[10909] doi:10.1016/j.isci.2025.114081 [paper, repository]

Dynamic neural processing of self-other synchronization error in interpersonal coordination.

Journal: iScience

Authors' code: OSF 7zvna (no license)

Status: code verified, 2 files readable, 2 matches

[10910] doi:10.1016/j.jbc.2025.110952 [paper, repository]

Seeding biosensor cell line that reproduces the Alzheimer tau fold.

Journal: The Journal of biological chemistry

Authors' code: tkatsine/Nuclear-counting (no license), tkatsine/Counting-protein-aggregates (no license)

Status: code verified, 4 files readable

[10911] doi:10.1016/j.mcpro.2025.101464 [paper, repository]

Oral Microbiome-Derived Proteins in Brain Extracellular Vesicles Circulate and Tie to Specific Dysbiotic and Neuropathological Profiles in Age-Related Dementias.

Journal: Molecular & cellular proteomics : MCP

Authors' code: MariaMuletFernandez/OralMicrobiome (no license)

Status: code verified, 3 files readable

[10912] doi:10.1016/j.xcrm.2025.102330 [paper, repository]

Plasma proteomics identifies proteins and pathways associated with incident epilepsy.

Journal: Cell reports. Medicine

Authors' code: ddzhang877/epilepsy_proteomics (no license), jokergoo/ComplexHeatmap (other), microsoft/LightGBM (MIT)

Status: code verified, 326 files readable, 1 match

[10913] doi:10.1016/j.xpro.2025.104203 [paper, repository]

Bridging mesoscopic and microscopic scales in multiple sclerosis: Post mortem brain block multi-contrast 9.4T MRI and histology quantification.

Journal: STAR protocols

Authors' code: qupath/qupath-extension-omero (Apache-2.0), LukasSchoenenberger/IHC-Analysis-Pipeline (MIT), qupath.readthedocs.io (no license), Zenodo 17397857 (MIT)

Status: code verified, 393 files readable, 40 matches

[10914] doi:10.1038/s41380-025-03346-w [paper, data]

Investigating milk-derived extracellular vesicles as mediators of maternal stress and environmental intervention.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[10915] doi:10.1038/s41389-025-00582-1 [paper, data]

CMKLR1/PKA signaling reinforces sonic hedgehog pathway to promote medulloblastoma pathogenesis.

Journal: Oncogenesis

Status: data only, 1 dataset cited

[10916] doi:10.1038/s41467-025-64987-7 [paper, repository]

Visual awareness sharpens and accelerates attentional sampling through enhancing inhibitory neural modulation in the attention network.

Journal: Nature communications

Authors' code: scidb.cn/s/eajfzf (no license)

Status: code verified

[10917] doi:10.1038/s41467-025-65468-7 [paper, repository]

Impact of a transient neonatal visual deprivation on the development of the ventral occipito-temporal cortex in humans.

Journal: Nature communications

Authors' code: SteMat9787/Neurocat3 (no license)

Status: code verified, 22 files readable, 2 matches

[10918] doi:10.1038/s41467-025-66058-3 [paper, repository]

Characterizing and controlling CRISPR repair outcomes in nondividing human cells.

Journal: Nature communications

Authors' code: Zenodo 22664838 (MIT), ivanjalid1/hsv1-crispr-escape (MIT), Zenodo 22664837 (MIT), Zenodo 22666106 (MIT)

Status: code verified, 106 files readable, 4 matches

[10919] doi:10.1038/s41562-025-02340-0 [paper, repository]

A habit and working memory model as an alternative account of human reward-based learning.

Journal: Nature human behaviour

Authors' code: AnneCollins/WMH (MIT)

Status: code verified, 27 files readable, 9 matches

[10920] doi:10.1038/s41591-025-04035-5 [paper, repository]

Brain activity associated with breakthrough food preoccupation in an individual on tirzepatide.

Journal: Nature medicine

Authors' code: wonkyung-woni-choi/tirzepatide_case_report (no license)

Status: code verified, 11 files readable, 2 matches

[10921] doi:10.1038/s41597-025-06077-3 [paper, repository]

101 Dalmatians: a multimodal naturalistic fMRI dataset in typical development and congenital sensory loss.

Journal: Scientific data

Authors' code: gallantlab/motion_energy_matlab (BSD-2-Clause), giacomohandjaras/101_Dalmatians (GPL-3.0)

Status: code verified, 81 files readable, 7 matches

[10922] doi:10.1038/s41597-025-06088-0 [paper, data]

A relaxation-diffusion MRI dataset of aging mouse brains at 9.4 Tesla.

Journal: Scientific data

Status: data only, 1 dataset cited

[10923] doi:10.1038/s41597-025-06093-3 [paper, repository]

Comprehensive Single-Cell Transcriptomic Atlas of the Mouse Pons and Medulla.

Journal: Scientific data

Authors' code: Junaid13913/Pons_Medulla_Atlas (MIT)

Status: empty repository, 2 files readable

[10924] doi:10.1038/s41598-025-23813-2 [paper, data]

An intelligent brain tumor detection model using lightweight hybrid twin attentive pyramid convolutional network.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10925] doi:10.1038/s41698-025-01136-9 [paper, repository]

Multiclass machine learning models for molecular subtype identification of pediatric low-grade glioma using bi-institutional MRIs for precision medicine.

Journal: NPJ precision oncology

Authors' code: IMICSLab/Precision_Medicine_for_pLGG (MIT)

Status: code verified, 13 files readable, 5 matches

[10926] doi:10.1038/s41746-025-02033-y [paper, repository]

Development of a deep learning-based prediction model for postoperative delirium using intraoperative electroencephalogram in adults.

Journal: NPJ digital medicine

Authors' code: oskumd2/EEG_Delirium (no license)

Status: code verified, 5 files readable, 12 matches

[10927] doi:10.1038/s41746-025-02047-6 [paper, repository]

Evaluating the diagnostic accuracy of vision language models for neuroradiological image interpretation.

Journal: NPJ digital medicine

Authors' code: Meddebma/VLM_Neurorad_Benchmark (no license)

Status: code verified, 2 files readable

[10928] doi:10.1038/s42003-025-08944-6 [paper, repository]

Wanting what hurts: D1 dopamine neuronal stimulation in CeA is sufficient to induce maladaptive attraction.

Journal: Communications biology

Authors' code: figshare 30057832 (CC-BY-4.0)

Status: code verified

[10929] doi:10.1038/s42003-025-08948-2 [paper, repository]

Large-scale brain mediation network based on resting-state functional MRI.

Journal: Communications biology

Authors' code: WANG-BIN-LAB/Brain_Mediation_Network (no license)

Status: code verified, 12 files readable

[10930] doi:10.1038/s42003-025-08959-z [paper, data]

Intercellular signaling and synaptic deconstruction uncovered by single-cell and spatial transcriptomics in an AD tauopathy model.

Journal: Communications biology

Status: code on request, 1 dataset cited

[10931] doi:10.1038/s42003-025-08969-x [paper, repository]

Cardiac-vagal rhythm echoes on the heartbeat's mechanosensory imprint in the brain.

Journal: Communications biology

Authors' code: diegocandiar/robust_hrv (no license)

Status: code verified, 7 files readable, 1 match

[10932] doi:10.1038/s42003-025-08999-5 [paper, repository]

Inharmonicity enhances brain signals of attentional capture and auditory stream segregation.

Journal: Communications biology

Authors' code: Zenodo 15236581 (CC-BY-4.0), k-basinski/inharmonicity_roving (no license)

Status: code verified, 48 files readable, 5 matches

[10933] doi:10.1038/s44318-025-00625-8 [paper, data]

Microglial colonization of the developing mouse brain is controlled by both microglial and neural CSF-1.

Journal: The EMBO journal

Status: data only, 2 datasets cited

[10934] doi:10.1073/pnas.2516083122 [paper, data]

High-resolution single-cell analyses reveal evolutionary constraints and evolvability of sexual circuits in <i>Drosophila</i>.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[10935] doi:10.1080/17501911.2025.2583893 [paper, repository]

Blood and adipose tissue DNA methylation in adults born preterm with a very low birth weight - a sibling comparison study.

Journal: Epigenomics

Authors' code: perishky/meffil (Artistic-2.0)

Status: code verified, 123 files readable, 3 matches

[10936] doi:10.1159/000549560 [paper, data]

Relative Hypotension is Not Associated with Rapid Progressor Phenotype in Anterior Circulation Large-Vessel Occlusion Acute Ischaemic Stroke: A Retrospective Cohort Study.

Journal: Cerebrovascular diseases extra

Status: data only, 1 dataset cited

[10937] doi:10.1162/imag.a.1013 [paper]

Enhancing visual brain-computer interface through V1-targeted RTMS by modulating visual attention.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[10938] doi:10.1162/imag.a.1017 [paper, repository]

Rapid visual engagement in neural processing of detailed touch interactions.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF ntfae (no license)

Status: code verified, 16 files readable, 8 matches

[10939] doi:10.1162/imag.a.1022 [paper]

Sex-specific cerebrovascular reactivity differences in autistic children related to functional connectivity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[10940] doi:10.1186/s40478-025-02158-x [paper, data]

Molecular features of congenital cytomegalovirus infection in neonatal mouse brain at single-cell resolution.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[10941] doi:10.1261/rna.080485.125 [paper, repository]

Polyadenylation landscape of in vivo long-term potentiation in the rat brain.

Journal: RNA (New York, N.Y.)

Authors' code: colab.research.google.com/drive/1qzmxcrjck3i5_muhzjozsrwmajgdedsi (no license), LRB-IIMCB/nanotail (GPL-3.0), LRB-IIMCB/ninetails (GPL-3.0), Zenodo 11478467 (CC-BY-4.0)

Status: code verified, 69 files readable, 2 matches

[10942] doi:10.12688/wellcomeopenres.23541.2 [paper, repository]

Midlife short sleep with and without obesity, and the risk of future dementia: a prospective cohort study.

Journal: Wellcome open research

Authors' code: figshare 28366847 (CC-BY-4.0)

Status: empty repository

[10943] doi:10.1371/journal.pbio.3003477 [paper, repository]

Cell2Spatial is a computational framework that maps single cells to spatial transcriptomic spots to reconstruct tissue architecture.

Journal: PLoS biology

Authors' code: Zenodo 17212677 (CC-BY-4.0), Su-informatics-lab/DSTG (MIT), lihuamei/Cell2Spatial (GPL-3.0), lihuamei/Cell2Spatial.Reproduce (no license)

Status: code verified, 35 files readable, 11 matches

[10944] doi:10.1371/journal.pcbi.1012713 [paper, repository]

Benchmarking the predictive capability of human gait simulations.

Journal: PLoS computational biology

Authors' code: MaartenAfschrift/PredSim_gait_conditions (no license), kuleuvenneuromechanics/predsim (AGPL-3.0)

Status: code verified, 794 files readable, 12 matches

[10945] doi:10.1371/journal.pcbi.1013711 [paper, repository]

In vivo neural activity of electrosensory pyramidal cells: Biophysical characterization and phenomenological modeling.

Journal: PLoS computational biology

Authors' code: ipfx.readthedocs.io (no license), aminakhshi/spc_mobjective (MIT)

Status: code verified, 43 files readable, 10 matches

[10946] doi:10.1371/journal.pone.0325403 [paper, data]

The insidious degeneration of white matter and cognitive decline in Fabry disease.

Journal: PloS one

Status: data only, 1 dataset cited

[10947] doi:10.1371/journal.pone.0332799 [paper, data]

Cognitive fatigability and neuronal correlates in chronic pain - A cross-sectional fMRI study.

Journal: PloS one

Status: data only, 1 dataset cited

[10948] doi:10.3389/fnagi.2025.1676721 [paper, repository]

Mediating role of muscle quality in the liver-brain axis: integrated analysis of CT markers of body composition, brain aging, and biomarkers.

Journal: Frontiers in aging neuroscience

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable, 2 matches

[10949] doi:10.3389/fphys.2025.1668129 [paper, data]

An EEG-based machine learning framework for diagnosing acute sleep deprivation.

Journal: Frontiers in physiology

Status: data only, 2 datasets cited

[10950] doi:10.3390/biomedicines13112799 [paper, data]

GBA1 Gene-Associated Transcriptomic Signatures Reveal Risk Genes in Parkinson's Disease.

Journal: Biomedicines

Status: code on request, 1 dataset cited

[10951] doi:10.3390/ijms262211114 [paper, repository]

Analysis of Transcript Expression and Core Promoter DNA Sequences of Brain, Adipose Tissues and Testis in Human and Fruit Fly.

Journal: International journal of molecular sciences

Authors' code: Zenodo 14388393 (CC-BY-4.0)

Status: code verified

[10952] doi:10.7554/elife.97274 [paper, repository]

Local, calcium- and reward-based synaptic learning rule that enhances dendritic nonlinearities can solve the nonlinear feature binding problem.

Journal: eLife

Authors' code: zahradd/dSPN-learning-rule (GPL-3.0)

Status: code verified, 51 files readable, 2 matches

Sunday, 16 November 2025 (5 papers)

[10953] doi:10.1002/advs.202507543 [paper, data]

CARD9 Conveys Pancreatic Islet Sympathetic Nervous β2 Signals to Reshape Macrophage Creatine Metabolism in Type 1 Diabetes.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[10954] doi:10.1002/hsr2.71488 [paper, data]

Bioinformatics Analysis of Persistent Dysregulated Expression of Genes Involved in HCV-Induced Neurological Disorders and Liver Injuries After DAA Treatment Through Weighted Gene Co-Expression Network Analysis.

Journal: Health science reports

Status: data only, 1 dataset cited

[10955] doi:10.1016/j.dcn.2025.101646 [paper, repository]

Longitudinal associations between adolescent adversity, brain development and behavioural and emotional problems.

Journal: Developmental cognitive neuroscience

Authors' code: brain-adversity-mentalhealth.netlify.app (no license)

Status: code verified

[10956] doi:10.1111/febs.70322 [paper, repository]

Transcriptional regulation of human NMNAT2: insights from 3D genome sequencing and bioinformatics.

Journal: The FEBS journal

Authors' code: deLaatLab/pipe4C (no license)

Status: code verified, 3 files readable

[10957] doi:10.3390/ijms262211079 [paper, data]

Altered Co-Expression Patterns of Mitochondrial NADH-Dehydrogenase Genes in the Prefrontal Cortex of Rodent ADHD Models.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 15 November 2025 (8 papers)

[10958] doi:10.1002/psp4.70146 [paper, repository]

Neural Controlled Differential Equation and Its Application in Pharmacokinetics and Pharmacodynamics.

Journal: CPT: pharmacometrics & systems pharmacology

Authors' code: wzs-zwdxsky/ncde-pkpd (CC-BY-NC-4.0)

Status: code verified, 3 files readable, 6 matches

[10959] doi:10.1016/j.celrep.2025.116571 [paper, repository]

Non-uniform contextual interactions in the visual cortex place fundamental limits on spatial vision.

Journal: Cell reports

Authors' code: acclab.github.io/dabest-python (no license), Zenodo 17352401 (CC-BY-4.0)

Status: code verified, 10 files readable, 1 match

[10960] doi:10.1016/j.isci.2025.114070 [paper, repository]

Individual paraventricular hypothalamic GLP-1R neurons track ingestion across energy states.

Journal: iScience

Authors' code: Zenodo 17353213 (CC-BY-4.0), RohanSavani/PVN_GLP1R_2P (no license)

Status: code verified, 28 files readable, 3 matches

[10961] doi:10.1016/j.nbd.2025.107195 [paper, data]

Cortical beta power modulation is asymmetric and reduced during movement execution and inhibition in Parkinson's disease.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[10962] doi:10.1038/s43856-025-01219-5 [paper, repository]

Neuroanatomical dimensions in major depression linked to cognition, adverse life events, self-harm, metabolomics and genetics.

Journal: Communications medicine

Authors' code: braincode.ca (no license), evarol/HYDRA (other), evarol/MIDAS (other), cran.r-project.org/web/packages (no license)

Status: code verified, 20 files readable

[10963] doi:10.1101/2025.11.13.25340159 [paper, repository]

Genome-wide profiling of short tandem repeat somatic instability reveals associations with age, sex and brain-related traits

Journal: medRxiv (preprint)

Authors' code: jhu99/strbean (no license)

Status: dead link

[10964] doi:10.1113/ep093199 [paper, repository]

Changes in corticospinal excitability in response to mediolateral gait instability.

Journal: Experimental physiology

Authors' code: OSF 7ajuz (no license), SjoerdBruijn/GaitEvents (MIT), Zenodo 573285 (other-open), sjoerdbruijn/localdynamicstability (GPL-3.0)

Status: code verified, 55 files readable, 11 matches

[10965] doi:10.3390/s25226981 [paper, repository]

A Bioinspired Multimodal CNN-LSTM Network for EEG Analysis of Patients in Coma.

Journal: Sensors (Basel, Switzerland)

Authors' code: SergioBaldo/CNN-LSTM-GA (MIT)

Status: code verified, 9 files readable, 6 matches

Friday, 14 November 2025 (46 papers, 11 on this page)

[10966] doi:10.1002/mrm.70183 [paper, repository]

Comprehensive 4D Parallel Transmission Spatial-Spectral Pulse Design for Slab-Selective Uniform Water-Selective Excitation: Demonstration in the Human Brain at 7 Tesla.

Journal: Magnetic resonance in medicine

Authors' code: longint1024/Real-4D-pTx (MIT)

Status: code verified, 23 files readable, 1 match

[10967] doi:10.1007/s00221-025-07187-5 [paper, repository]

Temporal dynamics of the twinkle-goes illusion and its relationship to neural theta oscillations.

Journal: Experimental brain research

Authors' code: figshare 28831118 (CC-BY-4.0)

Status: code verified

[10968] doi:10.1007/s00247-025-06403-2 [paper, repository]

Towards automated fetal brain biometry reporting for 3-dimensional T2-weighted 0.55-3T magnetic resonance imaging at 20-40 weeks gestational age range.

Journal: Pediatric radiology

Authors' code: SVRTK/auto-proc-svrtk (GPL-3.0), BioMedIA/MIRTK (Apache-2.0), hub.docker.com/r/fetalsvrtk (no license), doi:10.12751/g-node.ysgsy1 (no license)

Status: code verified, 769 files readable, 8 matches

[10969] doi:10.1007/s11357-025-01948-4 [paper, data]

Early loss of astrocyte p38α MAPK reduces hippocampal neuroinflammation, enhances synaptic strength, and increases non-synaptic mitochondrial uncoupling in female mice during non-pathological aging.

Journal: GeroScience

Status: data only, 1 dataset cited

[10970] doi:10.1007/s11571-025-10377-0 [paper, repository]

Emergence of functionally differentiated structures via mutual information minimization in recurrent neural networks.

Journal: Cognitive neurodynamics

Authors' code: cncs-fit/mio_rnn (MIT)

Status: code verified, 24 files readable, 2 matches

[10971] doi:10.1016/j.celrep.2025.116458 [paper, repository]

Combined somatic mutation and transcriptome analysis reveals region-specific differences in clonal architecture in human cortex.

Journal: Cell reports

Authors' code: parklab/MosaicForecast (MIT), yufengwudcs/ScisTree (GPL-3.0), diepthihoang/mpboot (GPL-2.0), Zenodo 17109324 (MIT), soniankim/brain-clone-mosaic (MIT)

Status: code verified, 549 files readable, 3 matches

[10972] doi:10.1016/j.celrep.2025.116561 [paper]

Control of aging-associated neurodegeneration via hypothalamic extracellular vesicles containing parathymosin.

Journal: Cell reports

Status: code on request

[10973] doi:10.1016/j.crmeth.2025.101236 [paper, data]

Cortical organoid-derived models of the melanoma brain metastatic niche enable prioritization of cancer-targeting drugs.

Journal: Cell reports methods

Status: code on request, 1 dataset cited

[10974] doi:10.1016/j.isci.2025.113950 [paper, repository]

Neurocomputational modeling of rule abstraction and memorization during probabilistic stimulus-reward learning.

Journal: iScience

Authors' code: OSF f6azc (no license)

Status: code verified, 7 files readable, 7 matches

[10975] doi:10.1016/j.isci.2025.114048 [paper]

Similarities of neocortical deep layer <i>Oprk1</i>-positive neurons and claustrum neurons in connectivity and activity.

Journal: iScience

Status: code on request

[10976] doi:10.1016/j.omtm.2025.101642 [paper]

Modified AAV5 capsid for improved brain biodistribution following direct injection in preclinical models.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

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