Every paper, by date: page 48

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 48 of 200: 25 November 2025 to 20 November 2025.

Tuesday, 25 November 2025 (43 papers, 39 on this page)

[10529] doi:10.1016/j.neuroimage.2025.121617 [paper, repository]

Time-resolved functional connectivity during visuomotor graph learning.

Journal: NeuroImage

Authors' code: Zenodo 596855 (Apache-2.0), Zenodo 3672110 (other-open), dalejn/cleanbib (MIT), nipy/nipype (Apache-2.0)

Status: code verified, 2,782 files readable, 9 matches

[10530] doi:10.1021/acsomega.5c10620 [paper, data]

Unveiling Dragon's Blood Radiation Mitigation Mechanism: Identifying Key Targets and Bioactive Compounds with Multiomics Using Integrated AI-Driven Models.

Journal: ACS omega

Status: data only, 1 dataset cited

[10531] doi:10.1038/s41467-025-65466-9 [paper, repository]

Single-cell multi-omics identifies metabolism-linked epigenetic reprogramming as a driver of therapy-resistant medulloblastoma.

Journal: Nature communications

Authors' code: Zenodo 3568187 (MIT), nf-core/scrnaseq (MIT)

Status: code verified, 34 files readable, 2 matches

[10532] doi:10.1038/s41467-025-65489-2 [paper, repository]

Multi-omic analysis reveals lipid dysregulation associated with mitochondrial dysfunction in parkinson's disease brain.

Journal: Nature communications

Authors' code: jchallqvist/mrmIntegrate (no license)

Status: code verified, 4 files readable

[10533] doi:10.1038/s41467-025-65490-9 [paper, repository]

Synaptic proteome diversity is shaped by the levels of glutamate receptors and their regulatory proteins.

Journal: Nature communications

Authors' code: Zenodo 17160545 (CC0-1.0), alex-bayes/synaptic-proteome-diversity (CC0-1.0)

Status: code verified, 20 files readable, 8 matches

[10534] doi:10.1038/s41467-025-65491-8 [paper, repository]

Context-dependent serotonin signaling links dietary quality to foraging decisions.

Journal: Nature communications

Authors' code: Zenodo 10723701 (CC-BY-4.0), bargmannlab/marquinasolis_bargmann2024 (no license)

Status: code verified, 20 files readable

[10535] doi:10.1038/s41467-025-65496-3 [paper, repository]

A foundation machine learning potential with polarizable long-range interactions for materials modelling.

Journal: Nature communications

Authors' code: ahmad-research-group/nequip-charge (MIT), reaxnet/reaxnet (GPL-3.0), Zenodo 17123107 (GPL-3.0)

Status: code verified, 168 files readable, 10 matches

[10536] doi:10.1038/s41467-025-66440-1 [paper, repository]

Single rosette-based generation of uniform cortical assembloids recapitulating cellular interactions between neurons and glial cells.

Journal: Nature communications

Authors' code: satijalab.org/seurat (no license), share.google/ouap1k3vkxvrj9ty0 (no license), share.google/3t5kpwj0cxlaw3zg4 (no license), cran.r-project.org/web/packages (no license)

Status: code verified

[10537] doi:10.1038/s41467-025-66766-w [paper, data]

1q gain bypasses the selective barrier against aneuploidy in RPE differentiation via wild-type co-culture rescue.

Journal: Nature communications

Status: data only, 1 dataset cited

[10538] doi:10.1038/s41467-025-66783-9 [paper, repository]

Evidence for divergent cortical organisation in Parkinson's disease and Lewy Body Dementia.

Journal: Nature communications

Authors' code: AngelikaZa/RegionalDifferentiationLBD (no license), Zenodo 17495352 (CC-BY-4.0)

Status: code verified, 12 files readable, 12 matches

[10539] doi:10.1038/s41537-025-00687-x [paper, repository]

Salience network segregation and symptom profiles in psychosis risk subgroups among youth and early adults.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: iyeraditya26/psychosis_risk_subgroups_pnc (MIT)

Status: code verified, 27 files readable, 8 matches

[10540] doi:10.1038/s41597-025-06328-3 [paper, repository]

EPIStress: A multimodal dataset of Physiological signals to measure cognitive stress in epilepsy patients.

Journal: Scientific data

Authors' code: hpi-ch/epistress (no license), jointly.readthedocs.io (no license), forrestbao/pyeeg (GPL-3.0), Zenodo 5833858 (other-open), hpi-dhc/jointly (MIT)

Status: code verified, 70 files readable, 10 matches

[10541] doi:10.1038/s41598-025-25649-2 [paper, repository]

Dose standardization for transcranial electrical stimulation: an accessible approach.

Journal: Scientific reports

Authors' code: TothJake/tes-dose (other)

Status: code verified, 4 files readable

[10542] doi:10.1038/s41598-025-25694-x [paper]

White matter hyperintensity burden predicts domain-specific cognitive decline across the Alzheimer's disease continuum.

Journal: Scientific reports

Status: code on request

[10543] doi:10.1038/s41598-025-25801-y [paper, data]

Brain benefits of deep learning-based noise management in experienced hearing aid users using functional near infrared spectroscopy.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10544] doi:10.1038/s41598-025-25839-y [paper, repository]

A comparative evaluation of explainability techniques for image data.

Journal: Scientific reports

Authors' code: DataSystemsGroupUT/explainability-comparison-for-images (no license)

Status: code verified, 3 files readable, 6 matches

[10545] doi:10.1038/s42003-025-09076-7 [paper, data]

Perceived sensorimotor synchrony enhances pain modulation and attenuates laser-evoked potentials.

Journal: Communications biology

Status: data only, 1 dataset cited

[10546] doi:10.1038/s42003-025-09217-y [paper]

Synergistic mechanisms of medullary cholinergic-serotonergic pathway interactions in regulating neuronal excitability and locomotor activities.

Journal: Communications biology

Status: code on request

[10547] doi:10.1073/pnas.2507018122 [paper, data]

Redox regulation of memory formation by Rrp1 in <i>Drosophila</i>.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[10548] doi:10.1073/pnas.2510337122 [paper, repository]

Light-field deep learning enables high-throughput, scattering-mitigated calcium imaging.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: afoust/LNet_jGCaMP8f_pipelines (MIT), Zenodo 14900716 (CC-BY-NC-ND-4.0)

Status: code verified, 13 files readable, 4 matches

[10549] doi:10.1080/10717544.2025.2585599 [paper, data]

Targeted strategy by curcumin and tideglusib biomimetic nano-systems alleviates oxidative stress and inflammation under ischemic stroke.

Journal: Drug delivery

Status: data only, 1 dataset cited

[10550] doi:10.1093/sleepadvances/zpaf085 [paper, data]

Musical harmony is processed during sleep: a proof-of-concept study.

Journal: Sleep advances : a journal of the Sleep Research Society

Status: data only, 1 dataset cited

[10551] doi:10.1101/2025.11.25.690220 [paper, repository]

Understanding neural circuit principles for representation learning through joint-embedding predictive architectures

Journal: bioRxiv (preprint)

Authors' code: fmi-basel/recurrent-predictive-learning (MIT), mebellet/PFCSequenceModels (no license)

Status: code verified, 65 files readable, 23 matches

[10552] doi:10.1111/add.70247 [paper]

Alcohol approach-avoidance task behavior and brain potentials differentially predict ecologically assessed alcohol craving and consumption in early emerging adulthood.

Journal: Addiction (Abingdon, England)

Status: code on request

[10553] doi:10.1113/ep093378 [paper, repository]

Do auditory deviants evoke cortical state changes under anaesthesia? A proof-of-concept study.

Journal: Experimental physiology

Authors' code: Zenodo 15791285 (no license), Zenodo 15791248 (no license)

Status: dead link

[10554] doi:10.1172/jci.insight.190445 [paper, repository]

Transcriptional signature of induced neurons differentiates virologically suppressed people with HIV from people without HIV.

Journal: JCI insight

Authors' code: Meyer-DH/StochasticAgingClock (MIT)

Status: code verified, 3 files readable

[10555] doi:10.1172/jci.insight.194582 [paper]

Daily locomotor activity declines with tumor growth and disease progression in glioblastoma.

Journal: JCI insight

Status: code on request

[10556] doi:10.1172/jci193332 [paper, data]

CAR T cells targeting the glycoprotein GD2 show potent antitumor efficacy in high-risk ependymoma models.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[10557] doi:10.1186/s13148-025-02015-7 [paper, repository]

Association of blood-based DNA methylation of lncRNAs with Alzheimer's disease diagnosis.

Journal: Clinical epigenetics

Authors' code: TransBioInfoLab/AD-meta-analysis-blood (no license), XDH-lab/ADblood_lnc (no license)

Status: code verified, 53 files readable, 9 matches

[10558] doi:10.1371/journal.pbio.3003479 [paper, repository]

Collaborative rule learning promotes interbrain information alignment.

Journal: PLoS biology

Authors' code: OSF he4tu (no license)

Status: code verified, 10 files readable, 4 matches

[10559] doi:10.1371/journal.pbio.3003481 [paper, repository]

Episodic memory involves transient and sparse connectivity aligned to both internal and external events.

Journal: PLoS biology

Authors' code: OSF gvure (no license), OSF 68bq3 (no license)

Status: code verified, 192 files readable, 9 matches

[10560] doi:10.1371/journal.pbio.3003518 [paper, repository]

Context-dependent activation of V1 parvalbumin interneurons enhances visual discrimination.

Journal: PLoS biology

Authors' code: Zenodo 17478714 (CC-BY-4.0), Zenodo 17396226 (CC-BY-4.0)

Status: code verified, 14 files readable, 2 matches

[10561] doi:10.1371/journal.pcbi.1012295 [paper, repository]

Multi-scale modelling of location- and frequency-dependent synaptic plasticity induced by repetitive magnetic stimulation in the dendrites of pyramidal neurons.

Journal: PLoS computational biology

Authors' code: Zenodo 17434411 (CC-BY-4.0)

Status: code verified, 1 file readable

[10562] doi:10.17912/micropub.biology.001785 [paper, repository]

CeSTAAN: An atlas of <i>C. elegans</i> adult neurons for fast queries of single-nucleus RNA sequencing data.

Journal: microPublication biology

Authors' code: svenmh/murphy-lab-project (no license)

Status: dead link

[10563] doi:10.21037/tp-2025-441 [paper, data]

Lateralized periodic discharges due to mutated PLEKHG2 in an infant with congenital nephrotic syndrome: a case report and literature review.

Journal: Translational pediatrics

Status: data only, 1 dataset cited

[10564] doi:10.3389/fnagi.2025.1692687 [paper, data]

VPS35 D620N mutation impairs neurogenesis and promotes ferroptosis in Parkinson's disease by using molecular docking, molecular dynamic simulation, and cellular model.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[10565] doi:10.3389/fnimg.2025.1608390 [paper, data]

Strategies for automatic generation of information processing pathway maps.

Journal: Frontiers in neuroimaging

Status: data only, 1 dataset cited

[10566] doi:10.3389/fphar.2025.1674737 [paper, data]

Pathogenic variants at the N-terminal arginine residue 44 disrupt human GABA transporter 1 function: insights from <i>Drosophila</i> epilepsy models.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[10567] doi:10.7554/elife.92964 [paper, repository]

Avoidance of hydrogen sulfide is modulated by external and internal states in <i>Caenorhabditis elegans</i>.

Journal: eLife

Authors' code: identifiers.org/rrid:scr_001622 (no license), neuronanalyser/neuronanalyser (no license), henriksson-lab/ce_h2s_tc (MIT)

Status: code verified, 8 files readable, 2 matches

Monday, 24 November 2025 (64 papers)

[10568] doi:10.1002/mrm.70186 [paper, data]

Read My Leads: Subject-Specific RF Hazard Assessment and Mitigation for DBS Implants in MRI.

Journal: Magnetic resonance in medicine

Status: data only, 3 datasets cited

[10569] doi:10.1016/j.alcohol.2025.11.001 [paper, repository]

Acute ethanol enhances septohippocampal coordination but disrupts intrinsic hippocampal theta dynamics during foraging.

Journal: Alcohol (Fayetteville, N.Y.)

Authors' code: calebdarden (no license)

Status: code verified

[10570] doi:10.1016/j.nbscr.2025.100140 [paper, data]

Sleep stage classification from ECG using machine learning: Evaluating the impact of signal duration.

Journal: Neurobiology of sleep and circadian rhythms

Status: data only, 3 datasets cited

[10571] doi:10.1016/j.xpro.2025.104219 [paper]

Protocol for in vitro phagocytosis assay for primary mouse microglia and human embryonic stem cell-derived microglia.

Journal: STAR protocols

Status: code on request

[10572] doi:10.1016/j.xpro.2025.104226 [paper, repository]

Protocol to analyze changes in hippocampal neural stem cell quiescence from single-cell RNA sequencing data.

Journal: STAR protocols

Authors' code: Zenodo 17255383 (CC-BY-4.0)

Status: code verified, 6 files readable, 18 matches

[10573] doi:10.1017/s1355617725101604 [paper, repository]

Hidden risk: Latent cognitive profiles and structural brain age reveal vulnerability in midlife metabolic syndrome.

Journal: Journal of the International Neuropsychological Society : JINS

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable

[10574] doi:10.1038/s41398-025-03701-z [paper]

Parental high-fat/high-sugar diets and their lasting impact on brain development in offspring: a longitudinal mouse MRI study.

Journal: Translational psychiatry

Status: code on request

[10575] doi:10.1038/s41398-025-03710-y [paper, repository]

Neurobehavioral pathways linking socioeconomic status hardship to suicide risk versus resilience in young adolescents: the roles of sleep health and default mode network connectivity.

Journal: Translational psychiatry

Authors' code: GeorgiaCenterforDevelopmentalScience (no license)

Status: code verified

[10576] doi:10.1038/s41467-025-65268-z [paper, repository]

A deterministic neuromorphic architecture with scalable time synchronization.

Journal: Nature communications

Authors' code: asyncvlsi/act (GPL-2.0)

Status: code verified, 295 files readable

[10577] doi:10.1038/s41467-025-65317-7 [paper, repository]

Solving the where problem and quantifying geometric variation in neuroanatomy using generative diffeomorphic mapping.

Journal: Nature communications

Authors' code: twardlab/emlddmm (Apache-2.0), Zenodo 17088430 (CC-BY-4.0)

Status: code verified, 25 files readable, 5 matches

[10578] doi:10.1038/s41467-025-65339-1 [paper, repository]

The implications of alternative splicing regulation for maximum lifespan.

Journal: Nature communications

Authors' code: Zenodo 16042325 (CC-BY-4.0)

Status: code verified, 11 files readable, 8 matches

[10579] doi:10.1038/s41467-025-65350-6 [paper, repository]

Single-nucleus and spatial transcriptomic profiling of human temporal cortex and white matter reveals key associations with AD pathology.

Journal: Nature communications

Authors' code: AllenInstitute/cell_type_mapper (BSD-2-Clause), Gaur-et-al (no license)

Status: code verified, 250 files readable, 2 matches

[10580] doi:10.1038/s41467-025-65354-2 [paper, repository]

Post-learning replay of hippocampal-striatal activity is biased by reward-prediction signals.

Journal: Nature communications

Authors' code: EmmaRoscow/QlearningReplay (MIT), Zenodo 17115788 (MIT)

Status: code verified, 61 files readable, 22 matches

[10581] doi:10.1038/s41467-025-65360-4 [paper, repository]

A shared central thalamus mechanism underlying diverse recoveries in disorders of consciousness.

Journal: Nature communications

Authors' code: HRZ-Sim/DoC-CeTh-2025 (CC-BY-4.0), Zenodo 17060496 (CC-BY-4.0)

Status: code verified, 52 files readable, 20 matches

[10582] doi:10.1038/s41467-025-65380-0 [paper, repository]

Flexible Use of Limited Resources for Sequence Working Memory in Macaque Prefrontal Cortex.

Journal: Nature communications

Authors' code: Zenodo 17180472 (CC-BY-4.0)

Status: code verified

[10583] doi:10.1038/s41467-025-65381-z [paper, repository]

Interactions between motor cortical forelimb regions and their influence on muscles reorganize across behaviors.

Journal: Nature communications

Authors' code: nataliekoh/ClimbingControlSpace (no license)

Status: empty repository, 1 file readable

[10584] doi:10.1038/s41467-025-65383-x [paper, data]

Effects of eye closure on the spiking activity of human lateral geniculate neurons.

Journal: Nature communications

Status: data only, 1 dataset cited

[10585] doi:10.1038/s41467-025-65395-7 [paper, data]

Functional synaptic connectivity of engrafted spinal cord neurons with hindlimb motor circuitry in the injured spinal cord.

Journal: Nature communications

Status: data only, 1 dataset cited

[10586] doi:10.1038/s41467-025-66080-5 [paper, repository]

Belief embodiment through eye movements facilitates memory-guided navigation.

Journal: Nature communications

Authors' code: AkisStavropoulos/eye_movement_analysis (no license), kaushik-l/firefly-rnn (no license), Zenodo 15646521 (CC-BY-4.0), Zenodo 7434801 (other-open), kaushik-l/firefly-monkey (no license)

Status: code verified, 1,018 files readable, 17 matches

[10587] doi:10.1038/s41467-025-66555-5 [paper, repository]

Frequency-dependent photic modulation of wakeful consolidation in visual learning.

Journal: Nature communications

Authors' code: codeocean:4737173 (no license)

Status: code found, still to be checked

[10588] doi:10.1038/s41467-025-66730-8 [paper, data]

Live-cell quantitative monitoring reveals distinct, high-affinity Gβγ regulations of GIRK2 and GIRK1/2 channels.

Journal: Nature communications

Status: data only, 1 dataset cited

[10589] doi:10.1038/s41593-025-02118-7 [paper, repository]

Large-scale drug screening in iPSC-derived motor neurons from sporadic ALS patients identifies a potential combinatorial therapy.

Journal: Nature neuroscience

Authors' code: cortex-lab/Suite2P (other)

Status: code verified, 217 files readable

[10590] doi:10.1038/s41593-025-02119-6 [paper, repository]

A mouse brain atlas based on dendritic microenvironments.

Journal: Nature neuroscience

Authors' code: Zenodo 13761460 (no license), SEU-ALLEN-codebase/BrainParcellation (MIT), SEU-ALLEN-codebase/pylib (no license)

Status: code verified, 107 files readable, 23 matches

[10591] doi:10.1038/s41598-025-25361-1 [paper, data]

Neonatal seizure detection from EEG using inception ResNetV2 feature extraction and XGBoost optimized with particle swarm optimization.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10592] doi:10.1038/s41598-025-25400-x [paper, repository]

Challenges and best practices when using ComBAT to harmonize diffusion MRI data.

Journal: Scientific reports

Authors' code: scil-vital/Pairwise-ComBAT (Apache-2.0)

Status: code verified, 22 files readable, 3 matches

[10593] doi:10.1038/s41598-025-25418-1 [paper, data]

Believing in simulated virtual scents produces reported olfactory sensations.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10594] doi:10.1038/s41598-025-25442-1 [paper, repository]

Sex difference in the neural correlates of volitional eyes closing.

Journal: Scientific reports

Authors' code: lufee10/myPrep (no license)

Status: code verified, 5 files readable, 1 match

[10595] doi:10.1038/s41598-025-25482-7 [paper, repository]

Decoding brain age predictions from sleep electroencephalography across infancy to adolescence.

Journal: Scientific reports

Authors' code: brain-modelling-group/functional-brain-age (no license)

Status: code verified, 30 files readable, 6 matches

[10596] doi:10.1038/s41598-025-25572-6 [paper, data]

Automated detection of polymicrogyria in pediatric patients using deep learning.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10597] doi:10.1038/s41598-025-25576-2 [paper, data]

A direct comparison of simultaneously recorded scalp, around-ear and in-ear EEG for neural selective auditory attention decoding to speech.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10598] doi:10.1038/s42003-025-08970-4 [paper, repository]

The effective connectome over a century of human life.

Journal: Communications biology

Authors' code: translationalneuromodeling.org/tapas (no license)

Status: code verified

[10599] doi:10.1038/s42003-025-09026-3 [paper, repository]

When your heart isn't in it anymore: cardiac correlates of task disengagement.

Journal: Communications biology

Authors' code: robince/gcmi (GPL-3.0), corcorana/WIM_HB (GPL-3.0), Zenodo 17223245 (GPL-3.0)

Status: code verified, 142 files readable, 20 matches

[10600] doi:10.1038/s42003-025-09029-0 [paper]

Prioritizing flexible working memory representations relies on the involvement of the parahippocampal-insula network during memory reactivation.

Journal: Communications biology

Status: code on request

[10601] doi:10.1038/s42003-025-09039-y [paper, repository]

Dynamic face-related eye movement representations in the human ventral pathway.

Journal: Communications biology

Authors' code: OSF rg4az (no license)

Status: code verified, 10 files readable, 6 matches

[10602] doi:10.1038/s42003-025-09040-5 [paper]

Functional specialization of the human posterior parietal cortex in visually and proprioceptively driven reaching corrections.

Journal: Communications biology

Status: code on request

[10603] doi:10.1038/s42003-025-09041-4 [paper, repository]

Numerosity adaptation suppresses early visual responses.

Journal: Communications biology

Authors' code: vistalab/vistasoft (no license), benharvey/vistasoftAddOns (GPL-3.0), zhangliangysccd/NumerosityAdaptation (no license)

Status: code verified, 2,173 files readable, 11 matches

[10604] doi:10.1038/s42003-025-09043-2 [paper, repository]

Neurocomputational mechanisms of social presence effects on instrumental learning.

Journal: Communications biology

Authors' code: Bonnie-bing/social-observation (no license)

Status: code verified, 67 files readable, 9 matches

[10605] doi:10.1038/s42003-025-09049-w [paper, data]

Cannabinoids shift the basal ganglia microRNA m<sup>6</sup>A methylation profile towards an anti-inflammatory phenotype in SIV-infected rhesus macaques.

Journal: Communications biology

Status: data only, 1 dataset cited

[10606] doi:10.1038/s42003-025-09054-z [paper, data]

Alzheimer's Tau seeds-induced pathology enhances hippocampal extracellular diffusion.

Journal: Communications biology

Status: data only, 1 dataset cited

[10607] doi:10.1038/s42005-025-02408-3 [paper, repository]

Neural heterogeneity enables adaptive encoding of time sequences.

Journal: Communications physics

Authors' code: Zenodo 17479414 (CC-BY-4.0), raphlaf/InferringTimeSequences (no license)

Status: code verified, 36 files readable, 4 matches

[10608] doi:10.1038/s43587-025-01018-6 [paper, repository]

Dissecting the genetic and proteomic risk factors for delirium.

Journal: Nature aging

Authors' code: phenotypes.healthdatagateway.org (no license), VasiliosRaptis/deliriumGen (MIT)

Status: code verified, 50 files readable, 14 matches

[10609] doi:10.1073/pnas.2501437122 [paper, data]

Emergence of a contrast-invariant representation of naturalistic texture in macaque visual cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 3 datasets cited

[10610] doi:10.1073/pnas.2514110122 [paper, repository]

Neural representation of the decisional reference point in monkeys.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF uqahc (no license)

Status: code verified, 5 files readable, 1 match

[10611] doi:10.1073/pnas.2524034122 [paper, data]

Dimeric gold nanoparticles enable multiplexed labeling in cryoelectron tomography.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 13 datasets cited

[10612] doi:10.1080/0886022x.2025.2587502 [paper, data]

Factors and outcomes associated with acute kidney injury in brain tumor resection patients: insights from a large US database (2010-2019).

Journal: Renal failure

Status: data only, 1 dataset cited

[10613] doi:10.1093/braincomms/fcaf463 [paper, repository]

Network localization of altered auditory and somatosensory sensitivity based on causal brain lesions.

Journal: Brain communications

Authors' code: bchcohenlab/BIDS_to_CBIG_fMRI_Preproc2016 (no license)

Status: code verified, 19 files readable

[10614] doi:10.1111/acel.70298 [paper, repository]

Calorie Restriction Attenuates Transcriptional Aging Signatures in White Matter Oligodendrocytes and Immune Cells of the Monkey Brain.

Journal: Aging cell

Authors' code: CZCBLab/Project_CRMetabolism (no license)

Status: code verified, 40 files readable, 11 matches

[10615] doi:10.1111/epi.70003 [paper]

EEG functional connectivity as a marker of evolution from infantile epileptic spasms syndrome to Lennox-Gastaut syndrome.

Journal: Epilepsia

Status: code on request

[10616] doi:10.1162/imag.a.1025 [paper, repository]

N-back task revisited: Comparing the neural correlates of updating and interference control.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF j4cpm (no license)

Status: code verified, 1 file readable, 1 match

[10617] doi:10.1162/imag.a.1037 [paper]

Predicting risk of impending cognitive decline in asymptomatic individuals with early Alzheimer's disease: Insights from cortical diffusion MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[10618] doi:10.1186/s12967-025-06714-w [paper, data]

Urinary metabolome at birth in patients with hypoxic-ischemic encephalopathy treated with therapeutic hypothermia and long-term neurodevelopmental outcomes: a 7-year follow up.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[10619] doi:10.1186/s12974-025-03620-2 [paper, data]

Urea functions as a risk signal driving astrocyte-mediated neuroinflammation following stroke.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[10620] doi:10.1186/s13046-025-03577-3 [paper, data]

Chronic administration of metformin exerts cytostatic and cytotoxic effects via the PP2A-GSK3β-MCL-1 pathway by inhibiting the tmCLIC1 membrane protein in glioblastoma-initiating cells.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 2 datasets cited

[10621] doi:10.1371/journal.pbio.3003527 [paper, repository]

Efficient and reliable spike sorting from neural recordings with UMAP-based unsupervised nonlinear dimensionality reduction.

Journal: PLoS biology

Authors' code: Zenodo 17575203 (CC-BY-4.0), Zenodo 3367782 (other-open), d-suarez-b/umap-dimensionality-reduction-for-spike-sorting-analysis (no license), petersenpeter/phy-plugins (GPL-3.0)

Status: code verified, 70 files readable, 5 matches

[10622] doi:10.20900/jpbs.20250017 [paper, data]

Adhesion G-Protein Coupled Receptors in Neurological and Psychiatric Disorders.

Journal: Journal of psychiatry and brain science

Status: data only, 1 dataset cited

[10623] doi:10.3389/fnhum.2025.1688296 [paper, repository]

Structural connectome gradients and their relationship to IQ in childhood.

Journal: Frontiers in human neuroscience

Authors' code: yoonmihong/SCgradients (no license)

Status: code verified, 6 files readable, 4 matches

[10624] doi:10.3390/brainsci15121258 [paper, data]

Musical Training and Perceptual History Shape Alpha Dynamics in Audiovisual Speech Integration.

Journal: Brain sciences

Status: data only, 1 dataset cited

[10625] doi:10.3390/cimb47120976 [paper, data]

Comparative Multi-Omics Analysis Identifies Shared Transcriptomic Signatures and Therapeutic Targets in Alzheimer's, Parkinson's, and Huntington's Diseases.

Journal: Current issues in molecular biology

Status: data only, 1 dataset cited

[10626] doi:10.3390/ijms262311347 [paper, repository]

Transferrin-Functionalized Liposomes Enhance MAPT-ASO Transport Across a 3D Blood-Brain Barrier Microvascular Network Model.

Journal: International journal of molecular sciences

Authors' code: S-Konig/Konig_Fluo_Signal_Quant_BBB_Microvascular_networks (MIT), Zenodo 17047899 (MIT)

Status: code verified, 4 files readable

[10627] doi:10.3390/jcm14238341 [paper, data]

Theta Cordance Decline in Frontal and Temporal Cortices: Longitudinal Evidence of Regional Cortical Aging.

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

[10628] doi:10.3390/s25237163 [paper, repository]

Advancing Mobile Neuroscience: A Novel Wearable Backpack for Multi-Sensor Research in Urban Environments.

Journal: Sensors (Basel, Switzerland)

Authors' code: emotional-cities/pluma-analysis (MIT), emotional-cities/walker-experiments (MIT), emotional-cities/notebooks (MIT), Zenodo 15874648 (MIT), Zenodo 15204462 (CC-BY-4.0), harp-tech/protocol (MIT)

Status: code verified, 79 files readable, 3 matches

[10629] doi:10.34133/cbsystems.0448 [paper]

Multimodal Imaging-Based Cerebral Blood Flow Prediction Model Development in Simulated Microgravity.

Journal: Cyborg and bionic systems (Washington, D.C.)

Status: code on request

[10630] doi:10.3892/mco.2025.2918 [paper, data]

A prognostic gene signature derived from aging-related genes predicts survival, immune landscape and therapy response in glioma.

Journal: Molecular and clinical oncology

Status: data only, 1 dataset cited

[10631] doi:10.7554/elife.95607 [paper, repository]

Generation of biophysical neuron model parameters from recorded electrophysiological responses.

Journal: eLife

Authors' code: shlizee/epgan (BSD-3-Clause)

Status: code verified, 8 files readable, 2 matches

Sunday, 23 November 2025 (9 papers)

[10632] doi:10.1002/advs.202513844 [paper]

NIR-Triggered Upconversion-Perovskite Heterostructures for Non-Genetic, Implant-Free Optoelectronic Neuromodulation.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: code on request

[10633] doi:10.1038/s41467-025-66487-0 [paper, data]

A rapid and dynamic role for FMRP in the plasticity of adult neurons.

Journal: Nature communications

Status: data only, 1 dataset cited

[10634] doi:10.1038/s41467-025-66779-5 [paper, data]

Mechano-bioactive hydrogel bioelectronics for mechanical-electrical-bioenergetic conversion and glia-modulating neural regeneration.

Journal: Nature communications

Status: data only, 1 dataset cited

[10635] doi:10.1038/s42003-025-09192-4 [paper, repository]

Label-free nonlinear microscopy probes cellular metabolism and myelin dynamics in live tissue.

Journal: Communications biology

Authors' code: laboratoryopticsbiosciences/thg-segmentation (no license), laboratoryopticsbiosciences/thg-folium (no license)

Status: code verified, 8 files readable, 1 match

[10636] doi:10.1038/s42003-025-09213-2 [paper, data]

Dcaf15-mediated EphA2 degradation triggers disruption of the blood-brain barrier during Streptococcus suis meningitis.

Journal: Communications biology

Status: data only, 1 dataset cited

[10637] doi:10.1080/10717544.2025.2577826 [paper, data]

Neuromodulation with low-intensity pulsed ultrasound (Lipus) combined with curcumin-gold nanoparticles (Cur-AuNPs) in an Alzheimer's disease model.

Journal: Drug delivery

Status: data only, 1 dataset cited

[10638] doi:10.1080/15548627.2025.2581217 [paper, repository]

Autophagy and mitophagy at the synapse and beyond: implications for learning, memory and neurological disorders.

Journal: Autophagy

Authors' code: accessdata.fda.gov/scripts/opdlisting (no license)

Status: code found, still to be checked

[10639] doi:10.1113/jp289699 [paper, repository]

Causal disconnectomics of motion perception networks: insights from transcranial magnetic stimulation-induced BOLD responses.

Journal: The Journal of physiology

Authors' code: Zenodo 17511167 (CC-BY-4.0)

Status: code verified, 7 files readable, 3 matches

[10640] doi:10.3390/brainsci15121257 [paper, data]

LPGGNet: Learning from Local-Partition-Global Graph Representations for Motor Imagery EEG Recognition.

Journal: Brain sciences

Status: data only, 1 dataset cited

Saturday, 22 November 2025 (26 papers)

[10641] doi:10.1007/s10803-025-07125-y [paper, repository]

Harnessing Trial-to-Trial Variability of EEG Spectral Characteristics to Understand Autism.

Journal: Journal of autism and developmental disorders

Authors' code: deeksha-ms/ITV_in_autism (no license)

Status: code verified, 5 files readable, 5 matches

[10642] doi:10.1016/j.celrep.2025.116610 [paper, repository]

Pathological tau alters head direction signaling and induces spatial disorientation.

Journal: Cell reports

Authors' code: hasselmonians/Jiang_Hijazi_2025 (no license), VioletteChiara/AnimalTA (MIT)

Status: code verified, 86 files readable, 4 matches

[10643] doi:10.1016/j.celrep.2025.116613 [paper, repository]

Sensory-neuron-derived CGRPα controls white adipocyte differentiation and tissue plasticity.

Journal: Cell reports

Authors' code: ruaslab (no license)

Status: code verified

[10644] doi:10.1016/j.isci.2025.114184 [paper]

Decoding auditory cognition: Unraveling the corticostriatal-SNr circuit's role in frequency discrimination accuracy.

Journal: iScience

Status: code on request

[10645] doi:10.1016/j.isci.2025.114192 [paper, repository]

Optogenetic interrogation of the zebrafish lateral line reveals brain-wide neural circuits involved in pattern separation.

Journal: iScience

Authors' code: Sihao/velez2025Optogenetic (MIT)

Status: code verified, 68 files readable, 7 matches

[10646] doi:10.1016/j.nicl.2025.103913 [paper, repository]

Brain network connectivity and dementia risk: a bidirectional Mendelian randomisation perspective.

Journal: NeuroImage. Clinical

Authors' code: ShouqiangZhu/rs-fMRI_Dementia_MR (no license)

Status: empty repository, 1 file readable

[10647] doi:10.1038/s41380-025-03362-w [paper, repository]

Aberrantly integrated adult-born immature neurons disrupt brain-wide networks during spatial memory processing.

Journal: Molecular psychiatry

Authors' code: HechenBao/Bao-DISC1-2025 (no license)

Status: code verified, 68 files readable, 1 match

[10648] doi:10.1038/s41398-025-03744-2 [paper]

Altered motor coordination, vocal communication, and cerebellar circuit connectivity in mice carrying a near-complete human chromosome 21.

Journal: Translational psychiatry

Status: code on request

[10649] doi:10.1038/s41467-025-65347-1 [paper, repository]

Divergent prefrontal cortex circuits regulate cued food seeking under distinct metabolic or emotional states.

Journal: Nature communications

Authors' code: Domontelab/Zhang_et_al_2025 (no license), Zenodo 17148554 (CC-BY-4.0), owenxz/zhang_et_al_2025 (no license)

Status: code verified, 13 files readable, 6 matches

[10650] doi:10.1038/s41467-025-66444-x [paper, repository]

Neural variability in the medial prefrontal cortex contributes to efficient adaptive behavior.

Journal: Nature communications

Authors' code: csmfindling/Volnoise (MIT)

Status: code verified, 144 files readable, 2 matches

[10651] doi:10.1038/s41467-025-66726-4 [paper, repository]

Perimenopausal state oestradiol to progesterone imbalance drives Alzheimer's risk via ERRα dysregulation and energy dyshomeostasis.

Journal: Nature communications

Authors' code: Zenodo 17424482 (CC-BY-4.0), kim-chow-hm-lab/esrra (no license)

Status: code verified, 8 files readable, 3 matches

[10652] doi:10.1038/s41467-025-66741-5 [paper, repository]

The ANTsX ecosystem for mapping the mouse brain.

Journal: Nature communications

Authors' code: ntustison/ANTsXMouseBrainMapping (Apache-2.0), dontminchenit/CCFAlignmentToolkit (no license), ntustison/ANTsXNetTraining (Apache-2.0)

Status: code verified, 346 files readable, 8 matches

[10653] doi:10.1038/s41598-025-26835-y [paper, repository]

Dynamic graph-based quantum feature selection for accurate fetal plane classification in ultrasound imaging.

Journal: Scientific reports

Authors' code: priyadharshni-code/(DG-QFS) (no license)

Status: dead link

[10654] doi:10.1038/s41598-025-27680-9 [paper, repository]

Neuron-specific homologous coding genes and non-coding regulatory regions are the most conserved amongst amniotes despite neuron-specific cell size diversity.

Journal: Scientific reports

Authors' code: VeritatemAmo/neuron-glia-dNdS (MIT), veritatemamo/neuron-glia-dnds](https: (no license)

Status: code verified, 50 files readable, 14 matches

[10655] doi:10.1038/s42003-025-09231-0 [paper, repository]

GWM-HFN, a Gray-White Matter heterogeneous fusion network for functional connectomes.

Journal: Communications biology

Authors' code: fil.ion.ucl.ac.uk/spm/software (no license), rfmri.org/dparsf (no license), LenJKiang/GWM-HFN (no license)

Status: code verified, 33 files readable, 16 matches

[10656] doi:10.1080/21505594.2025.2591455 [paper, data]

Oral L-Arginine treatment attenuates <i>Cryptococcus neoformans</i> extrapulmonary dissemination and disease progression.

Journal: Virulence

Status: data only, 2 datasets cited

[10657] doi:10.1093/noajnl/vdaf247 [paper, repository]

Patient-derived organoids and neurospheres recapitulate salient features of primary tumor heterogeneity.

Journal: Neuro-oncology advances

Authors' code: moorezac/pdn_pdo_compar (no license)

Status: code verified, 30 files readable, 4 matches

[10658] doi:10.1111/acel.70281 [paper, repository]

DNA Methylation Signatures of Systemic Inflammation Are Associated With Brain Volume, Cognitive Trajectories, and Long-Term Dementia Risk.

Journal: Aging cell

Authors' code: bio-learn/biolearn (BSD-3-Clause)

Status: code verified, 60 files readable, 1 match

[10659] doi:10.1111/nyas.70138 [paper, repository]

Cardiovascular Activity Predominantly Modulates Brain Dynamics in Non-REM Sleep Transitions.

Journal: Annals of the New York Academy of Sciences

Authors' code: CatramboneVincenzo/Brain-Heart-Interaction-Indexes (GPL-3.0)

Status: code verified, 5 files readable, 1 match

[10660] doi:10.1113/jp288916 [paper, repository]

Optimal neuromuscular performance requires motor neuron phosphagen kinases.

Journal: The Journal of physiology

Authors' code: yffily/paper_phosphagen2 (no license)

Status: code verified, 3 files readable, 2 matches

[10661] doi:10.1186/s12880-025-02053-w [paper, repository]

UKAN-EP: enhancing U-KAN with efficient attention and pyramid aggregation for 3D multi-modal MRI brain tumor segmentation.

Journal: BMC medical imaging

Authors' code: TianzeTang0504/UKAN-EP (MIT)

Status: code verified, 24 files readable, 4 matches

[10662] doi:10.1186/s12885-025-15291-6 [paper, repository]

Single-cell and spatial transcriptomics reveal lactylation-associated tumor cell clusters and define a prognostic risk model in glioblastoma.

Journal: BMC cancer

Authors' code: jianguoyun.com/p/duniqrgqquetdrjy6p0fiaa (no license)

Status: code verified

[10663] doi:10.3390/brainsci15121255 [paper, repository]

Brain Volumetric Changes Post-COVID-19: A Systematic Review.

Journal: Brain sciences

Authors' code: OSF b72qd (no license)

Status: empty repository

[10664] doi:10.3390/brainsci15121256 [paper]

Fractal Analysis of Brain Activity During Risky Drinking in Adolescents and Young Adults.

Journal: Brain sciences

Status: code on request

[10665] doi:10.3390/ijms262311288 [paper, data]

Persistent and Dose-Dependent Neural and Metabolic Gene Expression Changes Induced by Transient Citalopram Exposure in Zebrafish Embryos.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[10666] doi:10.3390/ijms262311290 [paper, data]

Specific Intratumoral Microbiome Signatures in Human Glioblastoma and Meningioma: Evidence for a Gut-Brain Microbial Axis.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 21 November 2025 (60 papers)

[10667] doi:10.1002/advs.202507323 [paper, data]

NDST3-Induced Epigenetic Reprogramming Reverses Neurodegeneration in Parkinson's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[10668] doi:10.1002/ana.78099 [paper]

Anatomical Associations Between Focal Mitochondrial Metabolism and Patterns of Neurodegeneration in Amyotrophic Lateral Sclerosis.

Journal: Annals of neurology

Status: code on request

[10669] doi:10.1016/j.addicn.2025.100242 [paper, data]

Corticostriatal cocaine-seeking ensembles are defined by differing gene expression from sucrose-seeking ensembles using a within-subject dual self-administration and seeking mouse model.

Journal: Addiction neuroscience

Status: data only, 1 dataset cited

[10670] doi:10.1016/j.isci.2025.114132 [paper, repository]

FMRP restoration in parvalbumin interneurons: A circuit-specific improvement of visual learning in fragile X syndrome.

Journal: iScience

Authors' code: AlexEMG/DeepLabCut (LGPL-3.0)

Status: code verified, 529 files readable, 1 match

[10671] doi:10.1016/j.isci.2025.114168 [paper, repository]

Single-cell transcriptomic profiling of zebrafish primary motor neurons reveals subtype-specific gene expression signatures.

Journal: iScience

Authors' code: ZhuangLab/MERFISH_analysis (other)

Status: code verified, 87 files readable, 1 match

[10672] doi:10.1016/j.isci.2025.114171 [paper, repository]

Robust epileptic seizure prediction: A 3D-SERESNet framework for patient-specific and multi-patient generalization.

Journal: iScience

Authors' code: Zenodo 17495041 (CC-BY-4.0)

Status: code verified

[10673] doi:10.1016/j.neuroimage.2025.121600 [paper]

Altered neurobehavioral white matter integrity in preterm children: A confounding-controlled analysis using the adolescent brain and cognitive development (ABCD) study.

Journal: NeuroImage

Status: code on request

[10674] doi:10.1016/j.xpro.2025.104195 [paper, repository]

Protocol for the enhanced analysis of electrophysiological data from high-density multi-electrode arrays with nicespike and spikeNburst.

Journal: STAR protocols

Authors' code: spiky/nicespike (GPL-3.0), spiky/nicespike.gitcd (no license), spiky/spikenburst (GPL-3.0), eea/odfpy (APACHE), lneisenman/burst_sync (BSD-2-Clause), doi:10.12751/g-node.2jqfxi (no license), doi:10.12751/g-node.5n7v18 (no license)

Status: code verified, 380 files readable, 16 matches

[10675] doi:10.1038/s41398-025-03692-x [paper, repository]

Deciphering the molecular tapestry of schizophrenia: integrating transcriptomics, neuroimaging, and clinical data for precision medicine.

Journal: Translational psychiatry

Authors' code: danizoeller/myPLS (GPL-2.0)

Status: code verified, 37 files readable

[10676] doi:10.1038/s41398-025-03694-9 [paper]

Methylphenidate stabilizes dynamic brain network organization during tasks probing attention and reward processing in stimulant-naïve children with ADHD.

Journal: Translational psychiatry

Status: code on request

[10677] doi:10.1038/s41398-025-03760-2 [paper, repository]

Common neural dysfunction in psychiatric disorders: Insights from a meta-analysis of resting-state fMRI studies.

Journal: Translational psychiatry

Authors' code: adelavega/neurosynth-lfc (MIT)

Status: code verified, 10 files readable

[10678] doi:10.1038/s41419-025-08126-6 [paper, repository]

Investigation of mitochondrial phenotypes in motor neurons derived by direct conversion of fibroblasts from familial ALS subjects.

Journal: Cell death & disease

Authors' code: csabak/ALS_DC_iMN (MIT)

Status: empty repository, 1 file readable

[10679] doi:10.1038/s41419-025-08226-3 [paper, data]

LMNA-PRKDC axis enhances DNA repair and promotes chemoresistance in glioblastoma.

Journal: Cell death & disease

Status: code on request, 1 dataset cited

[10680] doi:10.1038/s41467-025-65137-9 [paper, repository]

Reconciling time and prediction error theories of associative learning.

Journal: Nature communications

Authors' code: Zenodo 17193299 (CC-BY-4.0), noe-hamou/reconciling_time_rpe (no license)

Status: code verified, 4 files readable, 2 matches

[10681] doi:10.1038/s41467-025-65150-y [paper, repository]

Psilocybin alters visual contextual computations.

Journal: Nature communications

Authors' code: VU-Cog-Sci/prfpy (GPL-3.0), VU-Cog-Sci/prfpytools (MIT), Zenodo 10837111 (CC-BY-4.0), Zenodo 10201022 (CC-BY-4.0), Zenodo 10209657 (CC-BY-4.0), lukassnoek/pybest (MIT)

Status: code verified, 104 files readable, 4 matches

[10682] doi:10.1038/s41467-025-65156-6 [paper, repository]

Functional network collapse in neurodegenerative disease.

Journal: Nature communications

Authors' code: jbrown81/structure_function (no license), Zenodo 17195434 (CC-BY-4.0)

Status: code verified, 118 files readable, 14 matches

[10683] doi:10.1038/s41467-025-65178-0 [paper, repository]

Multiplex neurodegeneration proteotoxicity platform reveals DNAJB6 promotes non-toxic FUS condensate gelation and inhibits neurotoxicity.

Journal: Nature communications

Authors' code: LAG-MNG-CambridgeUniversity/TCSPCPhasor (no license), CUIMC-Confocal/burguete (MIT), Zenodo 16276180 (CC-BY-4.0)

Status: code verified, 21 files readable, 3 matches

[10684] doi:10.1038/s41467-025-65181-5 [paper, repository]

Replay without sharp wave ripples in a spatial memory task.

Journal: Nature communications

Authors' code: Zenodo 15199609 (CC-BY-4.0)

Status: code verified, 6 files readable, 10 matches

[10685] doi:10.1038/s41467-025-65190-4 [paper, repository]

Germline pathogenic variation impacts somatic alterations and patient outcomes in pediatric central nervous system tumors.

Journal: Nature communications

Authors' code: d3b-center/AlleleCouNT (Apache-2.0), d3b-center/OpenPedCan-analysis (CC0-1.0), Zenodo 17148014 (bsd-2-clause-netbsd), diskin-lab-chop/pbta-germline-somatic (BSD-2-Clause), Zenodo 15848007 (CC-BY-4.0), Zenodo 14833406 (bsd-2-clause-netbsd)

Status: code verified, 470 files readable, 38 matches

[10686] doi:10.1038/s41467-025-65192-2 [paper, repository]

A meta-interactive neural network for solving time-varying quadratic programming problems.

Journal: Nature communications

Authors' code: Zenodo 17232046 (CC-BY-4.0), 245578/a-meta-interactive-neural-network-for-solving-time-varying-quadratic-programming-problems (no license)

Status: code verified, 2 files readable

[10687] doi:10.1038/s41467-025-65213-0 [paper, repository]

High computational density nanophotonic media for machine learning inference.

Journal: Nature communications

Authors' code: Hideousmon/nanophotonic-media-for-machine-learning-inference (GPL-3.0), Zenodo 17256371 (GPL-3.0)

Status: code verified, 24 files readable

[10688] doi:10.1038/s41467-025-65231-y [paper, repository]

Adaptive stretching of representations across brain regions and deep learning model layers.

Journal: Nature communications

Authors' code: xinyacheung/neural_similarity (no license)

Status: code verified, 9 files readable, 4 matches

[10689] doi:10.1038/s41467-025-66354-y [paper, repository]

Vulnerability to memory decline in aging revealed by a mega-analysis of structural brain change.

Journal: Nature communications

Authors' code: daidak/memory-brain-change (no license), Zenodo 17433776 (CC-BY-4.0)

Status: code verified, 110 files readable, 6 matches

[10690] doi:10.1038/s41467-025-66641-8 [paper, data]

Voltage-gated ion channel diversity underlies neuronal excitability and nervous system evolution.

Journal: Nature communications

Status: data only, 4 datasets cited

[10691] doi:10.1038/s41531-025-01174-x [paper, repository]

Susceptibility and diffusion MRI biomarkers predict development of Parkinsonism in iRBD.

Journal: NPJ Parkinson's disease

Authors' code: acostaj/QSMbox (BSD-3-Clause)

Status: code verified, 184 files readable, 4 matches

[10692] doi:10.1038/s41531-025-01210-w [paper]

Structural and functional brain alterations associated with pain in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[10693] doi:10.1038/s41539-025-00376-5 [paper]

EEG analysis of brain dynamics in a simulated multi-task and multi-stage learning environment.

Journal: NPJ science of learning

Status: code on request

[10694] doi:10.1038/s41598-025-25137-7 [paper, data]

Conditional diffusion model for high-accuracy brain tumor segmentation in MRI images.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10695] doi:10.1038/s41598-025-25317-5 [paper, repository]

A boundary enhanced multi-task neural attention approach for Chinese named entity recognition.

Journal: Scientific reports

Authors' code: jiesutd/NCRFpp (Apache-2.0)

Status: code verified, 19 files readable, 5 matches

[10696] doi:10.1038/s41598-025-25330-8 [paper, repository]

Spinal cord neuromodulation for blood pressure control using low-intensity focused ultrasound.

Journal: Scientific reports

Authors' code: afl008/bpfus (no license)

Status: code verified, 5 files readable, 1 match

[10697] doi:10.1038/s41598-025-26778-4 [paper, repository]

Electrophysiological resting-state signatures link polygenic scores to general intelligence.

Journal: Scientific reports

Authors' code: OSF c9bwz (no license), stefanarnau/EEG_resting_state_network_intelligence (no license)

Status: code verified, 6 files readable, 4 matches

[10698] doi:10.1038/s42003-025-09018-3 [paper, repository]

Neural dynamics during the generation and evaluation of creative and non-creative ideas.

Journal: Communications biology

Authors' code: gkaguirrelab/MRklar (no license)

Status: code verified, 72 files readable, 2 matches

[10699] doi:10.1038/s42003-025-09219-w [paper, data]

Network-specific corpus callosum aging and age-moderated cognitive associations using tract-to-region analysis.

Journal: Communications biology

Status: data only, 1 dataset cited

[10700] doi:10.1038/s44220-025-00523-2 [paper, repository]

Sex-specific differences in brain activity dynamics of youth with a family history of substance use disorder.

Journal: Nature. Mental health

Authors' code: louisaschill/abcd_fhsud_nct (no license)

Status: code verified, 377 files readable, 18 matches

[10701] doi:10.1073/pnas.2426290122 [paper, repository]

Interactions between long- and short-term synaptic plasticity transform temporal neural representations into spatial.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: guetig/pnas_2025 (GPL-2.0)

Status: code verified, 28 files readable, 2 matches

[10702] doi:10.1093/beheco/araf134 [paper, data]

Breaking bonds: maternal and offspring states relate to constraint-based brood donation in a seaduck.

Journal: Behavioral ecology : official journal of the International Society for Behavioral Ecology

Status: data only, 1 dataset cited

[10703] doi:10.1093/braincomms/fcaf458 [paper, repository]

Alterations of sensorimotor predictive processes and their electrophysiological signatures in Tourette syndrome.

Journal: Brain communications

Authors' code: OSF xy5kw (no license)

Status: code verified, 8 files readable, 5 matches

[10704] doi:10.1093/braincomms/fcaf461 [paper, repository]

Genetic contribution to intrinsic functional connectivity underlying general intelligence: evidence from adult twin study.

Journal: Brain communications

Authors' code: arescobish/Twin-Study (no license)

Status: code verified, 12 files readable, 1 match

[10705] doi:10.1126/sciadv.adx9450 [paper, repository]

A striosomal accumbens pathway drives stereotyped behavior through an aversive Esr1+ hypothalamic-habenula circuit.

Journal: Science advances

Authors' code: Zenodo 17251612 (CC-BY-4.0), Zenodo 17285222 (CC-BY-4.0)

Status: code verified

[10706] doi:10.1136/jmg-2025-110987 [paper, data]

Further evidence of <i>RNU4ATAC</i> variants causing Joubert syndrome with skeletal involvement.

Journal: Journal of medical genetics

Status: data only, 1 dataset cited

[10707] doi:10.1162/imag.a.1023 [paper, repository]

Evidence for a reactionary account of retrieval state initiation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: longtermmemorylab.com/papers (no license), OSF qmzfv (no license)

Status: code verified

[10708] doi:10.1186/s12883-025-04491-z [paper]

Age-related differences in intrinsic neural timescales (INTs): an analysis of autocorrelation windows (ACWs) in resting-state EEG across young and older adults.

Journal: BMC neurology

Status: code on request

[10709] doi:10.1186/s12883-025-04503-y [paper, data]

Angiotensin-converting enzyme insertion/deletion genotype (rs4646994) association with increased risk of stroke: a case-control study in Eastern Iran.

Journal: BMC neurology

Status: data only, 1 dataset cited

[10710] doi:10.1186/s40360-025-00875-6 [paper, repository]

Toxicity assessment of doxycycline-aided artificial intelligence-assisted drug design targeting candidate 16S rRNA methyltransferase gene.

Journal: BMC pharmacology & toxicology

Authors' code: sourceforge.net/pyrx (no license)

Status: code verified

[10711] doi:10.1186/s40708-025-00270-1 [paper, repository]

Biotuner: A python toolbox integrating music theory and signal processing for harmonic analysis of physiological and natural time series.

Journal: Brain informatics

Authors' code: antoinebellemare/biotuner (MIT), antoinebellemare.github.io/biotuner (no license)

Status: code verified, 165 files readable, 15 matches

[10712] doi:10.1242/jeb.251495 [paper, repository]

A method for mechanically blocking antennal joints in Drosophila.

Journal: The Journal of experimental biology

Authors' code: Zenodo 17544806 (CC-BY-4.0), suverlab/NunnEtAl2025 (no license)

Status: code verified, 17 files readable, 4 matches

[10713] doi:10.1371/journal.pbio.3003498 [paper, repository]

Cardiometabolic health and physical robustness map onto distinct patterns of brain structure and neurotransmitter systems.

Journal: PLoS biology

Authors' code: Zenodo 7153571 (other-open), mlnl/cca_pls_toolkit (GPL-3.0)

Status: code verified, 208 files readable, 1 match

[10714] doi:10.1371/journal.pcbi.1013644 [paper, repository]

Emergence of sparse coding, balance and decorrelation from a biologically-grounded spiking neural network model of learning in the primary visual cortex.

Journal: PLoS computational biology

Authors' code: marko-ruslim/bio-spiking-v1-learning (no license)

Status: code verified, 6 files readable, 3 matches

[10715] doi:10.1371/journal.pcbi.1013714 [paper, repository]

Universal scale-free representations in human visual cortex.

Journal: PLoS computational biology

Authors' code: gin.g-node.org/paolo_papale/tvsd (CC-BY-4.0), BonnerLab/scale-free-visual-cortex (GPL-3.0)

Status: code verified, 234 files readable, 6 matches

[10716] doi:10.1371/journal.pone.0335038 [paper]

Fatigue in Post-COVID-Condition is accompanied by hypoperfusion of right-occipital areas.

Journal: PloS one

Status: code on request

[10717] doi:10.1371/journal.pone.0337352 [paper, repository]

An auditory-visual cooperative perception method for honking vehicle localization.

Journal: PloS one

Authors' code: Hongzunhei/AVCP (Apache-2.0)

Status: code verified, 116 files readable, 2 matches

[10718] doi:10.3389/fgene.2025.1725608 [paper, repository]

Transcriptome-wide m6A landscape across diverse porcine tissues revealed by nanopore direct RNA sequencing.

Journal: Frontiers in genetics

Authors' code: comprna/SUPPA (MIT)

Status: code verified, 27 files readable, 2 matches

[10719] doi:10.3389/fmicb.2025.1708868 [paper, data]

A new perspective on Wendan decoction: attenuation of CUMS-induced anxiety in mice by regulating gut microbiota and neuroinflammation.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[10720] doi:10.3390/biomimetics10120792 [paper, data]

The Vibrational Signature of Alzheimer's Disease: A Computational Approach Based on Sonification, Laser Projection, and Computer Vision Analysis.

Journal: Biomimetics (Basel, Switzerland)

Status: data only, 1 dataset cited

[10721] doi:10.3390/brainsci15121253 [paper, data]

Impact of the Traditional Lecture Teaching Method and Dalcroze's Body Rhythmic Teaching Method on the Teaching of Emotion in Music-A Cognitive Neuroscience Approach.

Journal: Brain sciences

Status: data only, 1 dataset cited

[10722] doi:10.3390/genes16121394 [paper, data]

A Single-Cell Omics Technical Guide for Advancing Neuropsychiatric Research.

Journal: Genes

Status: data only, 1 dataset cited

[10723] doi:10.3892/or.2025.9025 [paper, data]

S100B drives glioblastoma invasion and migration through TGF‑β2‑mediated epithelial‑mesenchymal transition.

Journal: Oncology reports

Status: data only, 1 dataset cited

[10724] doi:10.7554/elife.102391 [paper, repository]

Hierarchical Bayesian modeling of multiregion brain cell count data.

Journal: eLife

Authors' code: bayesiancellcounts.github.io (no license), Zenodo 16340993 (BSD-3-Clause), bayesiancellcounts/dimmocketal2025 (BSD-3-Clause)

Status: code verified, 40 files readable, 3 matches

[10725] doi:10.7554/elife.107683 [paper, repository]

PTBP1 depletion in mature astrocytes reveals distinct splicing alterations without neuronal features.

Journal: eLife

Authors' code: NaotoKubota/SnakeNgs (MIT), sika-zheng-lab/ptbp1_astrocyte_2025 (MIT)

Status: code verified, 17 files readable, 3 matches

[10726] doi:10.7759/cureus.97449 [paper, data]

Evaluating Large Language Models in the Image-Based Diagnosis of Intracranial Tumors.

Journal: Cureus

Status: data only, 1 dataset cited

Thursday, 20 November 2025 (62 papers, 26 on this page)

[10727] doi:10.1002/advs.202505228 [paper, data]

Formation of Condition-Dependent Alpha-Synuclein Fibril Strain in Artificial Cerebrospinal Fluid.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[10728] doi:10.1002/advs.202515131 [paper, repository]

Systematic Benchmarking of a Noise-Tolerant Conductive Hydrogel Electrode for Epidermal Bioelectronics.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: GiannisZgs/Golde_HG_SP_ML_Quality (GPL-3.0)

Status: code verified, 39 files readable, 24 matches

[10729] doi:10.1002/jex2.70095 [paper, data]

Single-Cell Analysis of L-Myc Expressing Neural Stem Cells and Their Extracellular Vesicles Revealed Distinct Progenitor Populations With Neurogenic Potential.

Journal: Journal of extracellular biology

Status: data only, 1 dataset cited

[10730] doi:10.1016/j.celrep.2025.116583 [paper]

MICU2 controls mitochondrial calcium signaling and migration in neurons during development.

Journal: Cell reports

Status: code on request

[10731] doi:10.1016/j.crmeth.2025.101239 [paper, repository]

Real-time 4D MRI reconstruction using DVR-NeMF, a framework for dynamic volumetric reconstruction.

Journal: Cell reports methods

Authors' code: wangrx33/DVR-NeMF (MIT), Zenodo 17310640 (CC-BY-4.0), wrx33/DVR-NeMF (MIT), liyues/PatRecon (no license), kylekma/X2CT (LGPL-3.0)

Status: code verified, 99 files readable, 6 matches

[10732] doi:10.1016/j.isci.2025.114066 [paper]

Effects of seasonal factors on brain function: Systematic review and future perspectives.

Journal: iScience

Status: code on request

[10733] doi:10.1016/j.jbc.2025.110949 [paper, data]

Calcitonin gene-related peptide inhibits macrophage migration and differentiation via the GTPase Rap1.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[10734] doi:10.1016/j.neurot.2025.e00803 [paper, data]

Simvastatin-induced neuroprotective effect after brain injury is mediated by mitochondrial protection through modulation of the 18 ​kDa translocator protein.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[10735] doi:10.1016/j.omtn.2025.102763 [paper, data]

Synergic microRNAs suppress human glioblastoma progression by modulating clinically relevant targets.

Journal: Molecular therapy. Nucleic acids

Status: data only, 1 dataset cited

[10736] doi:10.1016/j.patter.2025.101422 [paper, repository]

Predictive remapping and allocentric coding as consequences of energy efficiency in recurrent neural network models of active vision.

Journal: Patterns (New York, N.Y.)

Authors' code: KietzmannLab/EfficientRemapping (no license), Zenodo 17214743 (CC-BY-4.0)

Status: code verified, 70 files readable, 7 matches

[10737] doi:10.1016/j.stemcr.2025.102716 [paper, data]

Stem cell-based approach to identify regulatory TFs during mammalian cell differentiation.

Journal: Stem cell reports

Status: code on request, 1 dataset cited

[10738] doi:10.1016/j.stemcr.2025.102718 [paper, repository]

Hypersynchronous iPSC-derived SHANK2 neuronal networks are rescued by mGluR5 agonism.

Journal: Stem cell reports

Authors' code: fmccread/SHANK2-MEA (no license)

Status: code verified, 57 files readable, 1 match

[10739] doi:10.1038/s41380-025-03340-2 [paper, repository]

Shared and divergent alteration of whole-brain connectivity and sensory deficits in multiple autism mouse models.

Journal: Molecular psychiatry

Authors' code: HsuehYiPing/Thy1YFP (MIT), genephil/dlreg (no license)

Status: code verified, 21 files readable, 7 matches

[10740] doi:10.1038/s41380-025-03347-9 [paper, repository]

Linking speech patterns to brain structure in affective and psychotic disorders: an integrative natural language processing approach.

Journal: Molecular psychiatry

Authors' code: NeuroSTA/NeuroSTA (no license)

Status: code verified, 67 files readable, 9 matches

[10741] doi:10.1038/s41467-025-64887-w [paper, repository]

Sex-specific role of the 5-HT<sub>2A</sub> receptor in psilocybin-induced extinction of opioid reward.

Journal: Nature communications

Authors' code: changlulab/Jaster_Hadlock_et_al_2024 (GPL-3.0), Zenodo 16861456 (GPL-3.0)

Status: code verified, 26 files readable, 8 matches

[10742] doi:10.1038/s41467-025-64984-w [paper, repository]

Adaptable graph region for optimizing performance in dynamic system long-term forecasting via time-aware expert.

Journal: Nature communications

Authors' code: Amos-Yooupi/RGNN (no license)

Status: code verified, 36 files readable, 2 matches

[10743] doi:10.1038/s41467-025-64986-8 [paper, repository]

Distinctive roles of left and right entorhinal cortex in path integration via a non-invasive stimulation study.

Journal: Nature communications

Authors' code: codeocean:7152423 (no license)

Status: code found, still to be checked

[10744] doi:10.1038/s41467-025-65473-w [paper, repository]

Implantable bioelectronics for gut electrophysiology.

Journal: Nature communications

Authors' code: Zenodo 17142906 (apgl-v3), Zenodo 17142907 (apgl-v3), amparoguemesg/ens_bioelectronics (AGPL-3.0)

Status: code verified, 48 files readable, 10 matches

[10745] doi:10.1038/s41531-025-01164-z [paper]

Discriminating between proposed Brain-First and Body-First Parkinson's disease using conventional and radiomics-enhanced dopamine transporter SPECT image analysis.

Journal: NPJ Parkinson's disease

Status: code on request

[10746] doi:10.1038/s41539-025-00371-w [paper, repository]

Steady-state EEG captures how elementary classroom instruction drives plasticity for novel visual words.

Journal: NPJ science of learning

Authors' code: OSF bwh67 (no license)

Status: code verified, 2 files readable

[10747] doi:10.1038/s41597-025-06011-7 [paper, repository]

MU-Glioma Post: A comprehensive dataset of automated MR multi-sequence segmentation and clinical features.

Journal: Scientific data

Authors' code: amnmed09/MU_Glioma_Post_segmentation_pipeline (MIT)

Status: code verified, 6 files readable, 4 matches

[10748] doi:10.1038/s41597-025-06066-6 [paper, repository]

An Integrated Dataset of Metastatic Breast Cancer to the Brain with Imaging, Radiomics, and Tumor Genetics.

Journal: Scientific data

Authors' code: birra-taha/BreastCancer (no license)

Status: code verified, 4 files readable

[10749] doi:10.1038/s41598-025-24675-4 [paper, data]

snRNA-seq reveals key transcription factors in the inflammatory response of microglia after intracerebral hemorrhage.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10750] doi:10.1038/s41598-025-24702-4 [paper, repository]

Deep learning and whole-brain networks for biomarker discovery: modeling the dynamics of brain fluctuations in resting-state and cognitive tasks.

Journal: Scientific reports

Authors' code: FacuRoffet99/paper-hcp-tasks-hopf-bifurcation (MIT)

Status: code verified, 8 files readable, 8 matches

[10751] doi:10.1038/s41598-025-24972-y [paper]

A low-latency neural inference framework for real-time handwriting recognition from EEG signals on an edge device.

Journal: Scientific reports

Status: code on request

[10752] doi:10.1038/s41598-025-24975-9 [paper]

Proprioceptive and visual motion detection acuity contribute to children's dynamic postural control.

Journal: Scientific reports

Status: code on request

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