Every paper, by date: page 47

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 47 of 200: 1 December 2025 to 25 November 2025.

Monday, 1 December 2025 (110 papers, 30 on this page)

[10305] doi:10.1139/jpn-25-0063 [paper]

Learning evoked centrality dynamics in the schizophrenia brain: entropy, heterogeneity, and inflexibility of brain networks.

Journal: Journal of psychiatry & neuroscience : JPN

Status: code on request

[10306] doi:10.1158/0008-5472.can-24-4976 [paper, repository]

The Medulloblastoma Meta-Analysis Portal Enables Integrative Exploration of Clinical and Genomic Data from Patients.

Journal: Cancer research

Authors' code: stjude/proteinpaint (MIT)

Status: code verified, 1,735 files readable, 2 matches

[10307] doi:10.1158/2767-9764.crc-25-0495 [paper, data]

Association of Neuronal Autoantibodies with Overall Survival in Patients with Gastric Cancer.

Journal: Cancer research communications

Status: data only, 1 dataset cited

[10308] doi:10.1162/imag.a.1038 [paper, repository]

Distinct and complementary mechanisms of oscillatory and aperiodic alpha activity in visuospatial attention.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF m64ue (no license), OSF a9mvb (no license), mrc-cbu.cam.ac.uk/publications/opendata (no license)

Status: code verified, 43 files readable, 4 matches

[10309] doi:10.1162/neco.a.1475 [paper, repository]

Neural Associative Skill Memories for Safer Robotics and Modeling Human Sensorimotor Repertoires.

Journal: Neural computation

Authors' code: PranavMahajan25/NeuralASMs (MIT)

Status: code verified, 36 files readable, 12 matches

[10310] doi:10.1162/nol.a.24 [paper, repository]

Semantic Typicality of Affixes Facilitates Word Processing: MEG Evidence From Arabic.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF k6tca (no license)

Status: empty repository

[10311] doi:10.1167/iovs.66.15.4 [paper, data]

Presynaptic Changes in Mouse Rod Photoreceptors During Early Retinitis Pigmentosa.

Journal: Investigative ophthalmology & visual science

Status: data only, 1 dataset cited

[10312] doi:10.1167/iovs.66.15.60 [paper, data]

HDAC4 Promotes Neuroprotection of Retinal Ganglion Cells After Optic Nerve Injury.

Journal: Investigative ophthalmology & visual science

Status: data only, 1 dataset cited

[10313] doi:10.1186/s12915-025-02454-x [paper, data]

Gut dysbiosis leads to cognitive decline through CNTF-mediated activation of microglia in mice.

Journal: BMC biology

Status: data only, 1 dataset cited

[10314] doi:10.1186/s13041-025-01262-2 [paper, data]

Dysregulated circRNA-miRNA-mRNA networks reveal stage-specific mRNA expression changes in Parkinson's disease.

Journal: Molecular brain

Status: data only, 2 datasets cited

[10315] doi:10.1186/s13567-025-01676-9 [paper, data]

PotD contributes to Streptococcus suis-induced blood-brain barrier disruption by regulating arcA transcription.

Journal: Veterinary research

Status: data only, 1 dataset cited

[10316] doi:10.1186/s40001-025-03521-3 [paper, data]

MicroRNA-29b-3p promotes endothelial cell inflammation via NTRK2/PI3K/NLRP3 pathway in Moyamoya disease.

Journal: European journal of medical research

Status: data only, 1 dataset cited

[10317] doi:10.1186/s40478-025-02181-y [paper, repository]

Brain-derived neurotrophic factor supports pericyte and vascular homeostasis in the aging brain.

Journal: Acta neuropathologica communications

Authors' code: veerceer/cell-to-cell (no license)

Status: empty repository, 1 file readable

[10318] doi:10.1186/s40478-025-02183-w [paper, repository]

MRI investigation of orientation-dependent changes in microstructure and function in a mouse model of mild traumatic brain injury.

Journal: Acta neuropathologica communications

Authors' code: Zenodo 4495476 (CC-BY-4.0)

Status: code verified

[10319] doi:10.1210/clinem/dgaf311 [paper, repository]

MCT8 Deficiency in Females.

Journal: The Journal of clinical endocrinology and metabolism

Authors' code: figshare 28919729 (CC-BY-4.0)

Status: empty repository

[10320] doi:10.1210/endocr/bqaf177 [paper, repository]

Sex-Specific Thermoregulatory Effects of Estrogen Signaling in Reprimo Lineage Cells.

Journal: Endocrinology

Authors' code: kodori00/Rscript (no license)

Status: code verified, 1 file readable

[10321] doi:10.1371/journal.pbio.3003524 [paper, data]

Glia-to-glia serotonin signaling directs MMP-dependent infiltration for experience-dependent synapse pruning.

Journal: PLoS biology

Status: data only, 1 dataset cited

[10322] doi:10.1371/journal.pbio.3003546 [paper, repository]

A dynamic spatiotemporal normalization model captures perceptual and neural effects of spatial and temporal context.

Journal: PLoS biology

Authors' code: denisonlab/dstn (no license), Zenodo 17642125 (CC-BY-4.0)

Status: code verified, 68 files readable, 9 matches

[10323] doi:10.1371/journal.pcbi.1013675 [paper, repository]

Neural mechanisms of flexible perceptual inference.

Journal: PLoS computational biology

Authors' code: kadmon-lab/flexible-perceptual-inference (no license)

Status: code verified, 50 files readable, 5 matches

[10324] doi:10.1371/journal.pcbi.1013758 [paper, repository]

Nucleotide context models outperform protein language models for predicting antibody affinity maturation.

Journal: PLoS computational biology

Authors' code: matsengrp/epam (MIT)

Status: code verified, 77 files readable, 19 matches

[10325] doi:10.1371/journal.pcbi.1013765 [paper, repository]

A unified model library maps how neuromodulation reshapes the excitability landscape of neurons across the brain.

Journal: PLoS computational biology

Authors' code: Computational-NeuroPSI/Neuromodulation (no license)

Status: code verified, 13 files readable, 11 matches

[10326] doi:10.18699/vjgb-25-110 [paper, repository]

Self-learning virtual organisms in a physics simulator: on the optimal resolution of their visual system, the architecture of the nervous system and the computational complexity of the problem.

Journal: Vavilovskii zhurnal genetiki i selektsii

Authors' code: DerpyFox/organism_simulator (no license)

Status: empty repository, 1 file readable

[10327] doi:10.31661/jbpe.v0i0.2501-1883 [paper, data]

Driver Fatigue Detection using EEG Microstate Features and Support Vector Machines.

Journal: Journal of biomedical physics & engineering

Status: data only, 1 dataset cited

[10328] doi:10.3389/fpsyg.2025.1665506 [paper, repository]

Multimodal modeling of emotion regulation in interactive art therapy: EEG and PANAS-based dynamic simulation.

Journal: Frontiers in psychology

Authors' code: cstr.cn/31253.11.sciencedb.08758 (no license)

Status: code verified

[10329] doi:10.3390/ijms262311645 [paper, repository]

An AAV-Based Therapy Approach for Neurological Phenotypes of X-Linked Adrenoleukodystrophy.

Journal: International journal of molecular sciences

Authors' code: EgorDegtyarevAP/gene-expression-heatmap (MIT)

Status: code verified, 4 files readable, 3 matches

[10330] doi:10.3390/neurosci6040122 [paper, data]

Relationship Between Brain Lesions in Patients with Post-Stroke Aphasia and Their Performance in Neuropsychological Language Assessment.

Journal: NeuroSci

Status: data only, 1 dataset cited

[10331] doi:10.37796/2211-8039.1680 [paper, data]

Neuroprotection of paeoniflorin as antidepressant candidate.

Journal: BioMedicine

Status: data only, 1 dataset cited

[10332] doi:10.7554/elife.102578 [paper, repository]

Joint profiling of cell morphology and gene expression during in vitro neurodevelopment.

Journal: eLife

Authors' code: kilpinen-group/cortical_diff_code (MIT)

Status: code verified, 40 files readable, 37 matches

[10333] doi:10.7554/elife.106062 [paper, repository]

Complex opioid-driven modulation of glutamatergic and cholinergic neurotransmission in a GABAergic brain nucleus associated with emotion, reward, and addiction.

Journal: eLife

Authors' code: alleninstitute.github.io/abc_atlas_access (no license), acaccavano/abc-atlas_chittajallu2025 (GPL-3.0)

Status: code verified, 5 files readable, 2 matches

[10334] doi:10.7554/elife.107012 [paper, repository]

Cross-species standardised cortico-subcortical tractography.

Journal: eLife

Authors' code: spmic-uon/xtract_data (no license), spmic-uon/xtract_atlases (no license), spmic-uon/xtract_subcortex (CC-BY-NC-4.0)

Status: code verified, 5 files readable

Sunday, 30 November 2025 (6 papers)

[10335] doi:10.1002/advs.202510780 [paper, data]

Astrocytic PERK Deficiency Drives Prefrontal Circuit Dysfunction and Depressive-Like Behaviors.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[10336] doi:10.1016/j.nicl.2025.103919 [paper, repository]

Brain topology alteration in Alzheimer's disease brain networks: A multi-center study.

Journal: NeuroImage. Clinical

Authors' code: mengsig/%20DomiRank (no license), YongLiuLab (no license)

Status: code verified, 9 files readable, 2 matches

[10337] doi:10.1080/10717544.2025.2587378 [paper, data]

Development of a novel alpha7-nicotinic acetylcholine receptor-selective cell-penetrating peptide for intracellular cargo transport.

Journal: Drug delivery

Status: data only, 1 dataset cited

[10338] doi:10.1111/epi.70021 [paper, repository]

Genetic risk factor identification for common epilepsies guided by integrative omics data analysis.

Journal: Epilepsia

Authors' code: ashwini-mushunuri/ME-MAGMA (no license), thewonlab/H-MAGMA (no license)

Status: code verified, 7 files readable, 1 match

[10339] doi:10.3390/brainsci15121295 [paper, data]

A Mask R-CNN-Based Approach for Brain Aneurysm Detection and Segmentation from TOF-MRA Data.

Journal: Brain sciences

Status: data only, 2 datasets cited

[10340] doi:10.3390/cancers17233851 [paper]

Innovative In Vivo Imaging and Single Cell Expression from Tumor Bulk and Corpus Callosum Reveal Glioma Stem Cells with Unique Regulatory Programs.

Journal: Cancers

Status: code on request

Saturday, 29 November 2025 (27 papers)

[10341] doi:10.1002/advs.202500852 [paper, repository]

Genome-Wide by Lifetime Environment Interaction Studies of Brain Imaging Phenotypes.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: gasparrini/dlnm (no license)

Status: code verified, 47 files readable

[10342] doi:10.1007/s10571-025-01630-5 [paper, data]

Comprehensive and In-Depth Molecular and Pathway Studies of the Hippocampus in Alzheimer's Disease.

Journal: Cellular and molecular neurobiology

Status: data only, 1 dataset cited

[10343] doi:10.1016/j.isci.2025.114281 [paper, repository]

Spatial single-cell profiling identifies protein kinase Cδ-expressing microglia with anti-tumor function in glioblastoma.

Journal: iScience

Authors' code: sqjin/CellChat (GPL-3.0), YMa-lab/CARD (GPL-3.0), immunogenomics/harmony (no license)

Status: code verified, 65 files readable, 5 matches

[10344] doi:10.1016/j.prdoa.2025.100409 [paper, repository]

Linear predictive coding electroencephalography algorithms predict mortality in Parkinson's disease.

Journal: Clinical parkinsonism & related disorders

Authors' code: narayanan.lab.uiowa.edu (no license)

Status: code verified

[10345] doi:10.1038/s41380-025-03306-4 [paper]

Mapping the path to recovery: the intersection of cortical thickness reductions and serotonin transporter expression in anorexia nervosa.

Journal: Molecular psychiatry

Status: code on request

[10346] doi:10.1038/s41380-025-03354-w [paper]

Extracellular condensates (ECs) are endogenous modulators of HIV transcription and latency reactivation.

Journal: Molecular psychiatry

Status: data only

[10347] doi:10.1038/s41398-025-03776-8 [paper, repository]

Integrative neuroimmunology reveals leukocyte-expressing PAX6 as a critical predictor of major depressive disorder.

Journal: Translational psychiatry

Authors' code: insilico/DepressionGeneModules (no license), annysadri/PAX6_paper (no license)

Status: code verified, 20 files readable, 6 matches

[10348] doi:10.1038/s41467-025-66579-x [paper, repository]

The role of attention in multi attribute decision making.

Journal: Nature communications

Authors' code: machenslab/dPCA (MIT)

Status: code verified, 22 files readable, 2 matches

[10349] doi:10.1038/s41467-025-66615-w [paper, repository]

Anatomy-to-tract mapping infers white matter pathways without diffusion streamline propagation.

Journal: Nature communications

Authors' code: Zenodo 15792527 (CC-BY-4.0)

Status: code verified

[10350] doi:10.1038/s41467-025-66731-7 [paper, repository]

Text-to-music generation models capture musical semantic representations in the human brain.

Journal: Nature communications

Authors' code: Zenodo 17487214 (Apache-2.0), b2m-musiclm/b2m (Apache-2.0)

Status: code verified, 56 files readable, 9 matches

[10351] doi:10.1038/s41467-025-66849-8 [paper, repository]

The effects of task similarity during representation learning in brains and neural networks.

Journal: Nature communications

Authors' code: wj2/modularity (no license)

Status: code verified, 24 files readable, 1 match

[10352] doi:10.1038/s41467-025-66867-6 [paper, data]

Structural basis of sodium ion-dependent carnitine transport by OCTN2.

Journal: Nature communications

Status: data only, 3 datasets cited

[10353] doi:10.1038/s41467-025-66922-2 [paper, repository]

High-throughput two-photon volumetric brain imaging in freely moving mice.

Journal: Nature communications

Authors' code: WuLab-CIBR/miniBB2p (MIT), Zenodo 17423404 (MIT)

Status: code verified, 4 files readable

[10354] doi:10.1038/s41514-025-00290-5 [paper]

The neural correlates of cognitive training-induced gains in aging: a meta-analysis of neuroimaging studies.

Journal: npj aging

Status: code on request

[10355] doi:10.1038/s41531-025-01216-4 [paper]

Mapping the neural and molecular basis underlying fatigue in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[10356] doi:10.1038/s41598-025-29835-0 [paper, data]

Combined effects of red light and direct-current electric fields on neurite growth in 3D neural cell cultures.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[10357] doi:10.1038/s41598-025-29893-4 [paper, data]

EEG glasses for real-time brain electrical activity monitoring.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10358] doi:10.1038/s43856-025-01268-w [paper, data]

Plasma-based brain age as a potential biomarker for cognitive health and risk of brain-related disorders.

Journal: Communications medicine

Status: code on request, 2 datasets cited

[10359] doi:10.1093/braincomms/fcaf469 [paper, repository]

Variability and predictability in human sleep.

Journal: Brain communications

Authors' code: MGrauLeguia/human_sleep_predictability (no license)

Status: code verified, 3 files readable, 1 match

[10360] doi:10.1101/2025.11.27.690210 [paper, repository]

Predicting functional topography of the human visual cortex from cortical anatomy at scale

Journal: bioRxiv (preprint)

Authors' code: felenitaribeiro/deepRetinotopy_TheToolbox (GPL-3.0), felenitaribeiro/deepRetinotopy_validation (MIT), OSF gqnp8 (no license)

Status: code verified, 64 files readable, 17 matches

[10361] doi:10.1186/s12906-025-05196-z [paper, data]

Integrating serum pharmacochemistry with network pharmacology and pharmacological validation to elucidate the mechanism of KaiXinSan in treating insomnia.

Journal: BMC complementary medicine and therapies

Status: data only, 1 dataset cited

[10362] doi:10.1186/s12916-025-04523-y [paper, repository]

Machine learning-based prediction of short-term outcomes in aneurysmal subarachnoid hemorrhage: a multicenter study integrating clinical and inflammatory indicators.

Journal: BMC medicine

Authors' code: jaychou0514/R-ych-neuro-cqmu2024 (no license)

Status: code verified, 3 files readable

[10363] doi:10.1186/s13195-025-01926-0 [paper, repository]

Single-cell analysis reveals shared and distinct molecular signatures in brain organoid models of neurodegeneration and neuroinflammation.

Journal: Alzheimer's research & therapy

Authors' code: uniluxembourg/lcsb/bds/brain_organoid_ad_pd_comparison (MIT)

Status: code verified, 18 files readable, 14 matches

[10364] doi:10.1186/s40246-025-00875-x [paper, data]

Multi-region spatial transcriptomics reveals region specific differences in response to amyloid beta (Aβ) plaque induced changes in Alzheimer's disease (AD).

Journal: Human genomics

Status: data only, 2 datasets cited

[10365] doi:10.1186/s40478-025-02106-9 [paper, data]

Genomic heterogeneity drives distinct infiltration patterns in glioblastoma.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[10366] doi:10.3390/jimaging11120427 [paper, data]

Brain Tumour Classification Model Based on Spatial Block-Residual Block Collaborative Architecture with Strip Pooling Feature Fusion.

Journal: Journal of imaging

Status: data only, 2 datasets cited

[10367] doi:10.3390/mi16121364 [paper, data]

Design and Validation of a Brain-Controlled Hip Exoskeleton for Assisted Gait Rehabilitation Training.

Journal: Micromachines

Status: data only, 1 dataset cited

Friday, 28 November 2025 (43 papers)

[10368] doi:10.1002/cns3.70047 [paper, repository]

Preserved Limbic White Matter Predicts Favorable 2-Year Outcomes in Neonatal Hypoxic-Ischemic Encephalopathy.

Journal: Annals of the Child Neurology Society

Authors' code: OishiLab/OpenMAP-Di (no license)

Status: code verified, 3 files readable

[10369] doi:10.1007/s12672-025-03986-y [paper, data]

MiR-205-5p downregulation and circ_100290 upregulation in glioblastoma patients are associated with tumor aggressiveness.

Journal: Discover oncology

Status: data only, 1 dataset cited

[10370] doi:10.1016/j.bpr.2025.100241 [paper, data]

Photoelectrical control of apoptosis and autophagy.

Journal: Biophysical reports

Status: data only, 1 dataset cited

[10371] doi:10.1016/j.mex.2025.103736 [paper, data]

Interpretable deep learning for depression detection in neurological patients using EEG signals.

Journal: MethodsX

Status: data only, 1 dataset cited

[10372] doi:10.1038/s41380-025-03352-y [paper, data]

3D genetic architecture of schizophrenia risk across three neuronal subtypes.

Journal: Molecular psychiatry

Status: code on request, 1 dataset cited

[10373] doi:10.1038/s41467-025-65756-2 [paper, repository]

PCM1 coordinates centrosome asymmetry with polarized endosome dynamics to regulate daughter cell fate.

Journal: Nature communications

Authors' code: Zenodo 6612581 (other-open), royerlab/aydin (BSD-3-Clause), bio4212310/kymopy (BSD-3-Clause), Zenodo 5654826 (other-open), Zenodo 17336924 (CC-BY-4.0)

Status: code verified, 1,792 files readable, 2 matches

[10374] doi:10.1038/s41467-025-65809-6 [paper, repository]

The claustrum enhances neural variability by modulating the responsiveness of the prefrontal cortex.

Journal: Nature communications

Authors' code: huriyeatg/clapfcstimulation (no license)

Status: code verified, 38 files readable, 7 matches

[10375] doi:10.1038/s41467-025-65818-5 [paper, repository]

Impact of common variants on brain gene expression from RNA to protein to schizophrenia risk.

Journal: Nature communications

Authors' code: qiumanL/multi-omics-qtl (no license)

Status: code verified, 121 files readable, 19 matches

[10376] doi:10.1038/s41467-025-65935-1 [paper, data]

ZFP612 controls neuropathic pain through epigenetic repression of Il1rl1 within the silencer-promoter loop in primary sensory neurons of male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[10377] doi:10.1038/s41467-025-66356-w [paper, repository]

Bipolar and schizophrenia risk gene AKAP11 encodes an autophagy receptor coupling the regulation of PKA kinase network homeostasis to synaptic transmission.

Journal: Nature communications

Authors' code: JUMPSuite/JUMP (no license), GuangshengPei/WGCNA-Application-to-Proteomic-and-Metabolomic-Data (GPL-3.0), pyanglab.github.io/phosr (no license), Zenodo 10778288 (CC-BY-4.0)

Status: code verified, 244 files readable, 3 matches

[10378] doi:10.1038/s41467-025-66504-2 [paper, repository]

Elevated synaptic PKA activity and abnormal striatal dopamine signaling in Akap11 mutant mice, a genetic model of schizophrenia and bipolar disorder.

Journal: Nature communications

Authors' code: seanken/bulkisoform (no license)

Status: code verified, 17 files readable

[10379] doi:10.1038/s41467-025-66745-1 [paper, repository]

Contribution of amygdala to dynamic model arbitration under uncertainty.

Journal: Nature communications

Authors' code: DartmouthCCNL/woo_etal_amygdala (MIT), Zenodo 17480631 (MIT)

Status: code verified, 59 files readable, 7 matches

[10380] doi:10.1038/s41467-025-66832-3 [paper, repository]

Role of thalamus in human conscious perception revealed by low-intensity focused ultrasound neuromodulation.

Journal: Nature communications

Authors' code: BiyuHeLab/NatCommun_Levinson2021 (no license), proteusmrighifu/enhancetus_zadeh_jne (BSD-3-Clause), janghw4/template_rescaling (GPL-3.0), Zenodo 17381454 (GPL-3.0)

Status: code verified, 801 files readable, 3 matches

[10381] doi:10.1038/s41467-025-66844-z [paper, repository]

Physics-informed transformers for electronic quantum states.

Journal: Nature communications

Authors' code: Zenodo 17600587 (CC-BY-4.0), joaosds/pitransf (CC-BY-4.0)

Status: code verified, 152 files readable, 4 matches

[10382] doi:10.1038/s41522-025-00874-9 [paper, data]

Multi-omics framework integrating genetics microbiome and immunity for understanding motor neuron degeneration pathogenesis.

Journal: NPJ biofilms and microbiomes

Status: data only, 1 dataset cited

[10383] doi:10.1038/s41597-025-06147-6 [paper, data]

A multi-paradigm EEG dataset for studying upper limb rehabilitation exercises.

Journal: Scientific data

Status: data only, 3 datasets cited

[10384] doi:10.1038/s41598-025-26627-4 [paper, repository]

Enhanced hybrid deep neural network for EEG-based schizophrenia diagnosis using functional and temporal features.

Journal: Scientific reports

Authors' code: soltanmahdiam/EEG (no license)

Status: code verified, 6 files readable, 6 matches

[10385] doi:10.1038/s41598-025-26723-5 [paper, repository]

Visual cortex speckle imaging for shape recognition.

Journal: Scientific reports

Authors' code: zeevikal/visual-cortex-speckle (MIT)

Status: code verified, 38 files readable, 7 matches

[10386] doi:10.1038/s41598-025-26735-1 [paper, repository]

One section, two worlds: single-cell integration of MALDI-MSI and spatial transcriptomics on the same single tissue section.

Journal: Scientific reports

Authors' code: M4i-Imaging-Mass-Spectrometry/MALDI-MSI---Spatial-Transcriptomics-Overlay (no license)

Status: code verified, 4 files readable, 1 match

[10387] doi:10.1038/s41598-025-26745-z [paper, data]

Multi-omics exploration demonstrated the antidepressant effects of chrysophanol on diabetes-depression comorbidity rats via inflammatory, and neurodegenerative axes.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10388] doi:10.1038/s41598-025-26820-5 [paper, repository]

Cone snail venom-inspired somatostatin receptor 4 (SSTR<sub>4</sub>) agonists as new drug leads for peripheral pain.

Journal: Scientific reports

Authors' code: Aephir/create_heatmap (MIT)

Status: code verified, 4 files readable, 4 matches

[10389] doi:10.1038/s41598-025-26832-1 [paper, repository]

Regime-adaptive partial differential equations for interpretable multi-ethnic urban modeling.

Journal: Scientific reports

Authors' code: navid-nsk/mesmoe-csrn-2016-2021 (MIT)

Status: code verified, 26 files readable, 22 matches

[10390] doi:10.1038/s41598-025-26897-y [paper, data]

A novel deep neural model for efficient and scalable historical place image classification.

Journal: Scientific reports

Status: data only, 2 datasets cited

[10391] doi:10.1038/s41598-025-27019-4 [paper, data]

Mapping key mitochondrial genes in Alzheimer's disease through human tissue and iPSC derived neurons.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10392] doi:10.1038/s41598-025-29515-z [paper, repository]

Using fast periodic visual stimulation to investigate the processing of health-related images in the human brain.

Journal: Scientific reports

Authors' code: OSF 9423j (no license)

Status: code verified, 2 files readable, 1 match

[10393] doi:10.1126/sciadv.adt2730 [paper, data]

Cortical dopaminergic signaling mediates planning of directional movements.

Journal: Science advances

Status: data only, 1 dataset cited

[10394] doi:10.1126/sciadv.adw8410 [paper, data]

Gut microbial-derived indole-3-propionate improves cognitive function in Alzheimer's disease.

Journal: Science advances

Status: data only, 1 dataset cited

[10395] doi:10.1126/sciadv.adx1195 [paper, data]

Optogenetic silencing by combining a rhodopsin cyclase with an engineered cGMP-gated potassium channel.

Journal: Science advances

Status: data only, 1 dataset cited

[10396] doi:10.1126/sciadv.adx7514 [paper, repository]

Complementary roles of dorsal and ventral hippocampus in the flexible adaptation of goal-directed behavior.

Journal: Science advances

Authors' code: anackerlab (no license), AnackerLab/Hippocampus-Cognitive-flexibility (no license)

Status: code verified, 30 files readable, 6 matches

[10397] doi:10.1136/jitc-2025-012071 [paper, repository]

Cellular dynamics in cerebrospinal fluid unveils the key regulators of intracranial response to immune checkpoint inhibitors in NSCLC brain metastases.

Journal: Journal for immunotherapy of cancer

Authors' code: OpenGene/fastp (MIT), aertslab/pySCENIC (GPL-3.0), aapupu/ImmunoRankAge (MIT), aapupu/scell_CSF_NSCLC_BrainMets_ICI (GPL-3.0)

Status: code verified, 134 files readable, 18 matches

[10398] doi:10.1159/000549690 [paper, data]

Seizure Burden before and after Lidocaine as Add-On Therapy in (Amplitude-Integrated) Electroencephalography-Confirmed Neonatal Seizures.

Journal: Neonatology

Status: data only, 1 dataset cited

[10399] doi:10.1186/s10194-025-02217-7 [paper, data]

Epigenome-wide DNA methylation profiling reveals risk genes for migraine and its subtypes.

Journal: The journal of headache and pain

Status: data only, 1 dataset cited

[10400] doi:10.1186/s12014-025-09568-y [paper, data]

Comparative evaluation of analytical methods for CSF proteomics.

Journal: Clinical proteomics

Status: data only, 5 datasets cited

[10401] doi:10.1186/s12935-025-04050-z [paper, data]

Elevated expression and secretion of TGF-α contribute to Temozolomide resistance in human glioblastoma cells.

Journal: Cancer cell international

Status: data only, 1 dataset cited

[10402] doi:10.1186/s12984-025-01818-2 [paper, repository]

A model of the cerebellum generates gait adaptations in a reflex-based neuromusculoskeletal model during split-belt walking.

Journal: Journal of neuroengineering and rehabilitation

Authors' code: simtk.org/projects/splitbelt (no license)

Status: code verified

[10403] doi:10.1186/s40478-025-02161-2 [paper, data]

Early metabolic reprogramming and carbonic anhydrase IX-mediated extracellular acidification drive radiotherapy-induced glioblastoma cell dedifferentiation.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[10404] doi:10.1186/s40478-025-02163-0 [paper, repository]

Combined neocortical protein and morphological profiling of reactive microglia across Alzheimer's and Creutzfeldt-Jakob disease.

Journal: Acta neuropathologica communications

Authors' code: Danish-Reference-for-Prion-Diseases/IBA1_Reactivity (no license)

Status: code verified, 10 files readable, 11 matches

[10405] doi:10.1242/dmm.052498 [paper, data]

Impaired cortical development and translational control in a missense mouse model of DDX3X syndrome.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[10406] doi:10.3390/diagnostics15233043 [paper, data]

Habitat Model Based on Lung CT for Predicting Brain Metastasis in Patients with Non-Small Cell Lung Cancer.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[10407] doi:10.3390/insects16121214 [paper]

Role of Long Non-Coding RNAs in Food Wanting of <i>Apis Mellifera</i>.

Journal: Insects

Status: data only

[10408] doi:10.3390/s25237262 [paper, data]

Traditional Machine Learning Outperforms EEGNet for Consumer-Grade EEG Emotion Recognition: A Comprehensive Evaluation with Cross-Dataset Validation.

Journal: Sensors (Basel, Switzerland)

Status: code on request, 1 dataset cited

[10409] doi:10.7554/elife.106803 [paper, data]

Functional and molecular insights into muscle proprioceptors.

Journal: eLife

Status: data only, 2 datasets cited

[10410] doi:10.7554/elife.107301 [paper, repository]

Center-surround inhibition in expectation and its underlying computational and artificial neural network models.

Journal: eLife

Authors' code: OSF 5tj8c (no license)

Status: code found, still to be checked

Thursday, 27 November 2025 (53 papers)

[10411] doi:10.1002/ame2.70104 [paper, data]

Hub genes and diagnostic model associated with mitochondrial function in Alzheimer's disease.

Journal: Animal models and experimental medicine

Status: data only, 1 dataset cited

[10412] doi:10.1007/s00234-025-03848-y [paper, repository]

Application of deep neural networks in automatized ventriculometry and segmentation of the aqueduct in pediatric hydrocephalus patients.

Journal: Neuroradiology

Authors' code: 0rC0/VentriclesCNN (MIT)

Status: code verified, 8 files readable

[10413] doi:10.1007/s12035-025-05379-2 [paper, repository]

Cellular and Extracellular MicroRNA Dysregulation in LRRK2-Linked Parkinson's Disease.

Journal: Molecular neurobiology

Authors' code: qbic-projects/smrnaseq (MIT)

Status: code verified, 6 files readable, 1 match

[10414] doi:10.1016/j.bpj.2025.11.2682 [paper, repository]

Dynamics of excitability in axonal trees.

Journal: Biophysical journal

Authors' code: LC-IIT/axon_simulation (no license)

Status: code verified, 6 files readable

[10415] doi:10.1016/j.ebiom.2025.106040 [paper]

Quantitative susceptibility mapping at 7T as a biomarker of post- and interictal extravascular iron in patients with focal epilepsy.

Journal: EBioMedicine

Status: code on request

[10416] doi:10.1016/j.isci.2025.114241 [paper, repository]

Complementary roles of the human perirhinal and the entorhinal cortex in the hippocampal retrieval of episodic memory.

Journal: iScience

Authors' code: kimjisunbrain/OPPA (no license)

Status: code verified, 5 files readable

[10417] doi:10.1016/j.isci.2025.114242 [paper]

miR-219a-Robo1 axis acts as a conserved switch for slit-mediated commissural axon guidance.

Journal: iScience

Status: code on request

[10418] doi:10.1016/j.isci.2025.114248 [paper]

LPLAT11/MBOAT7-driven phosphatidylinositol remodeling ensures radial glial cell integrity in developing neocortex.

Journal: iScience

Status: code on request

[10419] doi:10.1016/j.isci.2025.114262 [paper, data]

KDM3B promotes neural invasion in colorectal cancer through TrkA upregulation by inhibiting H3K9 dimethylation.

Journal: iScience

Status: code on request, 1 dataset cited

[10420] doi:10.1016/j.isci.2025.114268 [paper, repository]

Polarized neural responses to political narratives are sensitive to small variations in self-reported political perspectives.

Journal: iScience

Authors' code: OSF 9kjzy (no license)

Status: empty repository

[10421] doi:10.1016/j.isci.2025.114269 [paper, repository]

Behavioral and neural mechanisms underlying contextual processing in naturalistic short video viewing.

Journal: iScience

Authors' code: Michaelcao92/ContextualProcessing (no license)

Status: empty repository, 1 file readable

[10422] doi:10.1016/j.jlr.2025.100952 [paper, repository]

Characterization of the brain lipidome associated with frontotemporal lobar degeneration MAPT P301S mutation.

Journal: Journal of lipid research

Authors' code: syjgino/SLA (Apache-2.0), CPM-Metabolomics-Lipidomics/soda-light (GPL-3.0)

Status: code verified, 21 files readable, 4 matches

[10423] doi:10.1016/j.neuroimage.2025.121579 [paper, repository]

Combining fast and slow fMRI sampling rates can enhance predictive power in resting-state data.

Journal: NeuroImage

Authors' code: neuroneural/undersampling-project (no license)

Status: code verified, 17 files readable, 7 matches

[10424] doi:10.1016/j.neuroimage.2025.121622 [paper]

Rapid whole-brain venous cerebral blood volume mapping using velocity-selective venous-spin-labeling with 3D GRASE.

Journal: NeuroImage

Status: code on request

[10425] doi:10.1038/s41378-025-01093-0 [paper]

A three-dimensional bipolar microneedle electrode array with local ground integrated at each sidewall for enhanced focal electric stimulation.

Journal: Microsystems & nanoengineering

Status: code on request

[10426] doi:10.1038/s41398-025-03748-y [paper, repository]

Abnormal cortical topographic patterns associated with auditory verbal hallucination in first-episode schizophrenia.

Journal: Translational psychiatry

Authors' code: juryxy/JuSpace (no license), rmarkello/abagen (BSD-3-Clause)

Status: code verified, 76 files readable, 4 matches

[10427] doi:10.1038/s41467-025-65080-9 [paper, repository]

Non-invasive ultrasonic neuromodulation of the human nucleus accumbens impacts reward sensitivity.

Journal: Nature communications

Authors' code: sitiny/mr-to-pct (Apache-2.0), sitiny/BRIC_TUS_Simulation_Tools (GPL-3.0), efouragnan/RL_models (no license), Zenodo 7110246 (other-open), Zenodo 8027240 (other-open), Zenodo 16682779 (CC-BY-4.0)

Status: code verified, 40 files readable, 6 matches

[10428] doi:10.1038/s41467-025-65634-x [paper, data]

Mutations in the β-tubulin TUBB impair ciliogenesis and are associated with ciliopathy-like phenotypes.

Journal: Nature communications

Status: data only, 1 dataset cited

[10429] doi:10.1038/s41467-025-65691-2 [paper]

Polymorphic functionalization driven by ion displacement-induced antiferroelectric ordering in CuBiP₂Se₆.

Journal: Nature communications

Status: code on request

[10430] doi:10.1038/s41467-025-65712-0 [paper, repository]

Multimodal single cell analyses reveal gene networks of planarian stem cell differentiation.

Journal: Nature communications

Authors' code: Zenodo 3552717 (GPL-3.0), timoast/sinto (MIT), scbe-lab/regulatory_logic (no license), Zenodo 17253117 (CC-BY-4.0), nbisweden/agat (GPL-3.0)

Status: code verified, 336 files readable, 32 matches

[10431] doi:10.1038/s41467-025-65727-7 [paper, repository]

A non-monotonic code for event probability in the human brain.

Journal: Nature communications

Authors' code: TheComputationalBrain/fmri_code_event_probability (MIT), Zenodo 17152441 (MIT), Zenodo 17152442 (MIT)

Status: code verified, 336 files readable, 23 matches

[10432] doi:10.1038/s41467-025-65775-z [paper]

Localized Wnt-signaling promotes asymmetric NuMA-dependent oriented divisions and unequal apportioning of mitochondria.

Journal: Nature communications

Status: code on request

[10433] doi:10.1038/s41467-025-66685-w [paper, repository]

Molecular Motif Learning as a pretraining objective for molecular property prediction.

Journal: Nature communications

Authors' code: Young0222/MotiL (MIT), codeocean:9672051 (no license), Zenodo 16916467 (MIT)

Status: code verified, 99 files readable, 7 matches

[10434] doi:10.1038/s41467-025-66714-8 [paper, repository]

Neural correlates of trial outcome monitoring during long-term learning in primate posterior parietal cortex.

Journal: Nature communications

Authors' code: machenslab/dPCA (MIT), codeocean:9408712 (no license)

Status: code verified, 22 files readable, 2 matches

[10435] doi:10.1038/s41531-025-01184-9 [paper]

Subthalamic stimulation shifts brain network dynamics from extensive functional support to motor dominance in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[10436] doi:10.1038/s41592-025-02891-0 [paper, repository]

Nondestructive X-ray tomography of brain tissue ultrastructure.

Journal: Nature methods

Authors' code: cboschp/ptychoStainedTissue (MIT), psi.ch/en/sls (no license), psi.ch/sites/default (no license), Zenodo 17233854 (MIT), Zenodo 16364653 (MIT)

Status: code verified, 111 files readable, 3 matches

[10437] doi:10.1038/s41598-025-26291-8 [paper, data]

Brain power comparison between microgravity and head-down tilt bed rest: an electroencephalography approach.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10438] doi:10.1038/s41598-025-26360-y [paper, repository]

Prediction of longitudinal outcomes and novel cluster identification in epilepsy.

Journal: Scientific reports

Authors' code: Medical-Vision-Lab/Clustering-in-AED-epilepsy (no license)

Status: code verified, 5 files readable, 6 matches

[10439] doi:10.1038/s41598-025-26411-4 [paper, repository]

In silico drug sensitivity predicts subgroup-specific therapeutics in medulloblastoma patients.

Journal: Scientific reports

Authors' code: AyadLab/DrugSeq (no license), combin.shinyapps.io/drugseq (no license)

Status: code verified, 2 files readable, 1 match

[10440] doi:10.1038/s41598-025-26438-7 [paper, repository]

Higher-order sonification of the human brain.

Journal: Scientific reports

Authors' code: pacoshu/sonification (Apache-2.0)

Status: code verified, 1 file readable

[10441] doi:10.1038/s41598-025-27429-4 [paper, repository]

Green urban environments enhance brain-to-brain synchrony.

Journal: Scientific reports

Authors' code: ML-D00M/urban-environment-eeg-analysis (no license)

Status: code verified, 16 files readable, 7 matches

[10442] doi:10.1038/s41598-025-27515-7 [paper, repository]

Phishing threat mitigation in E-commerce using a quantum-enhanced hybrid AI framework.

Journal: Scientific reports

Authors' code: Zenodo 17364368 (CC-BY-4.0)

Status: code verified, 1 file readable

[10443] doi:10.1038/s41598-025-27735-x [paper, repository]

Task evoked EEG reveals neural processing differences in aphantasia.

Journal: Scientific reports

Authors' code: OSF qdz8m (no license)

Status: code found, still to be checked

[10444] doi:10.1038/s41598-025-29393-5 [paper, repository]

Seamless integration for enhanced seizure prediction using HybridConvMobileNet on Typhoon HIL.

Journal: Scientific reports

Authors' code: PriyaranjanBIT/Seamless-Integration-for-Real-Time-Seizure-Prediction-HybridConvMobileNet-on-Typhoon-HIL (no license)

Status: dead link

[10445] doi:10.1038/s41598-025-29934-y [paper, repository]

Emotion induction by western music across personality types using internet of things technology.

Journal: Scientific reports

Authors' code: 15776761752-cpu/eeg_emotion_pipeline_complete (no license)

Status: code verified, 9 files readable, 2 matches

[10446] doi:10.1038/s41598-025-30030-4 [paper, repository]

RNA modifications, alternative splicing and circular RNA landscape in the mouse brain: inosine and beyond.

Journal: Scientific reports

Authors' code: beyergroup/ElongationRate (no license), KoziolLaboratory/AI-edit-circRNA (MIT)

Status: code verified, 23 files readable, 3 matches

[10447] doi:10.1038/s41698-025-01173-4 [paper, data]

Unsupervised generative AI for enhancing brain tumor segmentation in multi-center, incomplete real-world data scenarios.

Journal: NPJ precision oncology

Status: code on request, 1 dataset cited

[10448] doi:10.1038/s41746-025-02108-w [paper, repository]

Understanding the robustness of vision-language models to medical image artefacts.

Journal: NPJ digital medicine

Authors' code: ziijiecheng/VLM_robustness (no license), TorchIO-project/torchio (Apache-2.0), platform.openai.com/docs/quickstart (no license), anthropics/anthropic-cookbook (MIT), huggingface.co/microsoft/biomedclip-pubmedbert_256-vit_base_patch16_224 (MIT), huggingface.co/meta-llama/llama-3.2-11b-vision-instruct (no license), huggingface.co/google/medgemma-4b-pt (no license)

Status: code verified, 407 files readable, 1 match

[10449] doi:10.1038/s42003-025-09112-6 [paper, data]

Cell- and sex-specificity in the transcriptomic response of the hippocampal neurovascular unit to obesity.

Journal: Communications biology

Status: data only, 1 dataset cited

[10450] doi:10.1038/s42003-025-09115-3 [paper, repository]

Characterizing and decoding ultraconserved regions uncovers their regulatory significance in human brain development and disorders.

Journal: Communications biology

Authors' code: byebye1034/1_UCR_project (no license), Zenodo 17373904 (CC-BY-4.0)

Status: code verified, 240 files readable, 17 matches

[10451] doi:10.1038/s43856-025-01204-y [paper, repository]

Segmentation-free pretherapeutic assessment of BRAF-status in pediatric low-grade gliomas.

Journal: Communications medicine

Authors' code: IMICSLab/pLGG_whole_image (no license)

Status: code verified, 34 files readable, 8 matches

[10452] doi:10.1101/2025.11.25.690406 [paper, data]

Dog brain atlas generated via spatially constrained spectral clustering

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[10453] doi:10.1111/imm.70070 [paper, data]

Preventing Differentiation Towards Primitive Macrophages in Stem Cells With Down Syndrome.

Journal: Immunology

Status: data only, 1 dataset cited

[10454] doi:10.1172/jci196638 [paper, repository]

Early axonal degeneration linked to clinical decline in Alzheimer's disease progression revealed with diffusion MRI.

Journal: The Journal of clinical investigation

Authors' code: mrpadunit/JCI_paper_Early_axonal_degeneration (no license)

Status: code verified, 17 files readable, 1 match

[10455] doi:10.1186/s12920-025-02250-0 [paper]

Deciphering copy number variations and gene implications in an Egyptian cohort with autism spectrum disorders.

Journal: BMC medical genomics

Status: data only

[10456] doi:10.1186/s40001-025-03540-0 [paper, repository]

The association between white blood cell-to-hemoglobin ratio and mortality risk in critical traumatic brain injury: insights from MIMIC-IV retrospective analysis.

Journal: European journal of medical research

Authors' code: MIT-LCP/mimic-code (MIT)

Status: code verified, 79 files readable, 2 matches

[10457] doi:10.1186/s40104-025-01289-4 [paper, data]

Unveiling the rumen-microbiome-brain circuit: a unique dimension of gut-brain axis in ruminants.

Journal: Journal of animal science and biotechnology

Status: data only, 1 dataset cited

[10458] doi:10.1242/jcs.264152 [paper, repository]

Polarity reversal of stable microtubules during neuronal development.

Journal: Journal of cell science

Authors' code: HohlbeinLab/FTM2 (GPL-3.0), UU-cellbiology/neuron_motorPAINT (no license)

Status: code verified, 15 files readable, 1 match

[10459] doi:10.32604/or.2025.068313 [paper, data]

Long Non-Coding RNA HOXA10-AS Promotes the Migration and Invasion of Glioblastoma Cells by Serving as a Competing Endogenous RNA for miR-99a-3p to Upregulate ITGB5 Expression.

Journal: Oncology research

Status: data only, 1 dataset cited

[10460] doi:10.3389/fpsyg.2025.1685720 [paper, data]

An examination of the cognitive and affective processes in errorless motor learning: study protocol.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[10461] doi:10.3390/brainsci15121275 [paper, data]

Endophenotype Research in Epilepsy Across Time.

Journal: Brain sciences

Status: data only, 1 dataset cited

[10462] doi:10.3390/brainsci15121276 [paper, repository]

Exploring Brain Dynamics Within the Approach-Avoidance Bias.

Journal: Brain sciences

Authors' code: AitanaGrasso-Cladera/Exploring-brain-dynamics-within-the-Approach-Avoidance-Bias (no license), debnolte/EEG_preprocessing_scripts (no license)

Status: code verified, 21 files readable, 9 matches

[10463] doi:10.3390/ijms262311496 [paper, repository]

Multimodal Biomarker Characterization of the ALS/FTD Spectrum: A Real-World Clinical Dataset Analysis.

Journal: International journal of molecular sciences

Authors' code: nes-b/ALS-FTD-Classifier (MIT)

Status: code verified, 3 files readable, 7 matches

Wednesday, 26 November 2025 (61 papers)

[10464] doi:10.1007/s10548-025-01157-4 [paper, repository]

Dissociating the Role of Dorsolateral Prefrontal Cortex and Ventrolateral Prefrontal Cortex in Cognitive Control in Depression: A Combined HD-tDCS and fNIRS Study.

Journal: Brain topography

Authors' code: gongcastro/tdcs-nirs-connectivity (MIT)

Status: code verified, 9 files readable, 5 matches

[10465] doi:10.1007/s12672-025-04017-6 [paper, data]

Prognostic and therapeutic response prediction in glioblastoma multiforme using a lactylation-associated gene signature.

Journal: Discover oncology

Status: data only, 1 dataset cited

[10466] doi:10.1007/s12672-025-04123-5 [paper, repository]

Deep learning model outperforms traditional models in clinical data-based prognostic prediction for adult-type diffuse glioma.

Journal: Discover oncology

Authors' code: mfsd2a/ADG_predict (no license)

Status: code verified, 2 files readable, 1 match

[10467] doi:10.1016/j.celrep.2025.116624 [paper, repository]

Spatial and single-cell transcriptomics reveal the reorganization of cerebellar microglia with aging.

Journal: Cell reports

Authors' code: doughenze/Aging_CB (no license)

Status: code verified, 36 files readable, 12 matches

[10468] doi:10.1016/j.crmeth.2025.101242 [paper, repository]

Visual detection of seizures in mice using supervised machine learning.

Journal: Cell reports methods

Authors' code: KumarLabJax/ptz-seizure-supervised (CC-BY-NC-SA-4.0), Zenodo 17427421 (CC-BY-4.0)

Status: code verified, 14 files readable, 7 matches

[10469] doi:10.1016/j.isci.2025.114221 [paper]

MRI-DTI contributes to evaluating diffuse neural injury following repetitive mild traumatic brain injury.

Journal: iScience

Status: code on request

[10470] doi:10.1038/s41398-025-03755-z [paper, repository]

Identifying subtypes based on environmental and neurobiological risk and resilience factors of postpartum maternal mental health.

Journal: Translational psychiatry

Authors' code: lailahadaya/preterm-ExecuteSNF.CC (MIT)

Status: code verified, 4 files readable, 2 matches

[10471] doi:10.1038/s41398-025-03783-9 [paper]

The impact of chronic heroin addiction on creative cognition: an EEG study based on divergent thinking.

Journal: Translational psychiatry

Status: code on request

[10472] doi:10.1038/s41467-025-65518-0 [paper, repository]

Temporal structure of natural language processing in the human brain corresponds to layered hierarchy of large language models.

Journal: Nature communications

Authors' code: hassonlab/247-pickling (no license), hassonlab/247-encoding (MIT), hassonlab/247-plotting (no license), DVader96/GPTology (GPL-3.0)

Status: code verified, 86 files readable, 5 matches

[10473] doi:10.1038/s41467-025-65547-9 [paper, data]

Pharmacologic inhibition of PCBP2 biomolecular condensates relieves Alzheimer's disease.

Journal: Nature communications

Status: data only, 3 datasets cited

[10474] doi:10.1038/s41467-025-65556-8 [paper, data]

Investigating the neuronal role of the proteasomal ATPase subunit gene PSMC5 in neurodevelopmental proteasomopathies.

Journal: Nature communications

Status: data only, 2 datasets cited

[10475] doi:10.1038/s41467-025-65643-w [paper, repository]

Integrating axis quantitative trait loci looks beyond cell types and offers insights into brain-related traits.

Journal: Nature communications

Authors' code: Zenodo 17221192 (CC-BY-4.0), LidaWangPSU/BASIC (no license)

Status: code verified, 2 files readable

[10476] doi:10.1038/s41467-025-65665-4 [paper, repository]

Disrupted theta synchronization and synaptic connectivity in the visual cortex of Fmr1 KO mice.

Journal: Nature communications

Authors' code: chubykin/V1-LM-oscillations (no license), yididiyan/theta-oscillations-neural-connectivity (no license), HuanglabPurdue/PR-4Pi (no license)

Status: code verified, 209 files readable, 10 matches

[10477] doi:10.1038/s41467-025-66291-w [paper, repository]

Cellular and molecular associations with intrinsic brain organization.

Journal: Nature communications

Authors' code: neurosynth/neurosynth (MIT), FelixFengCN/ICNs-annotation (no license)

Status: code verified, 44 files readable, 4 matches

[10478] doi:10.1038/s41467-025-66542-w [paper, repository]

Inferring intrinsic neural timescales using optimal control theory.

Journal: Nature communications

Authors' code: LindenParkesLab/nct_xr (no license)

Status: code verified, 24 files readable, 16 matches

[10479] doi:10.1038/s41467-025-66562-6 [paper, repository]

Spatiotemporal patterns differentiate hippocampal sharp-wave ripples from interictal epileptiform discharges in mice and humans.

Journal: Nature communications

Authors' code: acnavasolive/ripmap (no license), buzsakilab/buzcode (GPL-3.0), valegarman/HippoCookBook (no license), buzsakilab.nyumc.org/datasets/maslarovaa (no license), Zenodo 17413352 (CC-BY-4.0)

Status: code verified, 3,386 files readable, 17 matches

[10480] doi:10.1038/s41467-025-66677-w [paper, repository]

Factorized embedding of goal and uncertainty in the lateral prefrontal cortex guides stably flexible learning.

Journal: Nature communications

Authors' code: brain-machine-intelligence/RLdim-mvpa-model (no license), Zenodo 17412741 (CC-BY-4.0)

Status: code verified, 2,000 files readable, 12 matches

[10481] doi:10.1038/s41467-025-66699-4 [paper, repository]

A hierarchy of time constants and reliable signal propagation in the marmoset cerebral cortex.

Journal: Nature communications

Authors' code: GuanchunLi/Marmoset_Cortex_Model (AGPL-3.0), Zenodo 17188863 (apgl-v3)

Status: code verified, 21 files readable, 9 matches

[10482] doi:10.1038/s41467-025-66727-3 [paper, data]

Microproteins Simba1 and Simba2 activate Wingless signaling during the reactivation of neural stem cells in Drosophila.

Journal: Nature communications

Status: data only, 1 dataset cited

[10483] doi:10.1038/s41467-025-66774-w [paper, repository]

The NMDA receptor subunit GluN2D is a potential target for rapid antidepressant action.

Journal: Nature communications

Authors' code: figshare 29245961 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

[10484] doi:10.1038/s41537-025-00705-y [paper, repository]

Spatiotemporal dynamics of RERE in schizophrenia pathogenesis: insights from multi-omics and single-cell sequencing.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: bulik/ldsc (GPL-3.0), bsml320/deTS (MIT), gusevlab/fusion_twas (GPL-3.0), linnarsson-lab/adult-human-brain (BSD-2-Clause), Zenodo 15447113 (CC-BY-4.0), duanxian0301/single-cell (no license)

Status: code verified, 150 files readable, 12 matches

[10485] doi:10.1038/s41586-025-09796-0 [paper, repository]

Vicarious body maps bridge vision and touch in the human brain.

Journal: Nature

Authors' code: N-HEDGER/Vicarious_somatotopy (MIT)

Status: code verified, 17 files readable, 7 matches

[10486] doi:10.1038/s41586-025-09805-2 [paper, repository]

Building compositional tasks with shared neural subspaces.

Journal: Nature

Authors' code: Zenodo 17274345 (CC-BY-4.0)

Status: code verified, 246 files readable, 8 matches

[10487] doi:10.1038/s41587-025-02905-4 [paper, repository]

All-optical visualization of specific molecules in the ultrastructural context of brain tissue.

Journal: Nature biotechnology

Authors' code: seung-lab/cloud-volume (BSD-3-Clause), kuan-lab/pan-exm-t_paper (GPL-3.0)

Status: code verified, 108 files readable, 6 matches

[10488] doi:10.1038/s41598-025-26004-1 [paper, repository]

Human visual attention-inspired knowledge distillation underlying interpretable computational pathology.

Journal: Scientific reports

Authors' code: ChimesZ/RFD4Hist (BSD-2-Clause)

Status: code verified, 78 files readable, 9 matches

[10489] doi:10.1038/s41598-025-26095-w [paper, repository]

Reconstructing music perception from brain activity using a prior guided diffusion model.

Journal: Scientific reports

Authors' code: neoayanami/fmri-music-gen (no license)

Status: code verified, 11 files readable, 7 matches

[10490] doi:10.1038/s41598-025-26109-7 [paper, data]

6-Gingerol enhances the anti-tumor activity of temozolomide by inhibiting EGR1/GDF15 signaling in glioblastoma.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10491] doi:10.1038/s41598-025-26152-4 [paper, data]

LightMG-Net: an efficient lightweight deep neural network for multiclass grading of retinal detachment using handcrafted statistical mechanisms.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10492] doi:10.1038/s41598-025-26186-8 [paper, data]

Identification of miR-940 and associated gene features as novel biomarkers for early detection of cerebral hemorrhage.

Journal: Scientific reports

Status: data only, 2 datasets cited

[10493] doi:10.1038/s41598-025-26259-8 [paper, repository]

Detection of brain network abnormalities by graph invariants in Alzheimer's disease using MRI images.

Journal: Scientific reports

Authors' code: kaggle.com/code/anirudhasutar (no license), Gnbhavi/Brain_graph_analysis (no license)

Status: code verified, 4 files readable, 6 matches

[10494] doi:10.1038/s41598-025-26315-3 [paper, data]

Dietary fiber modulates gut microbiota and lipid metabolism ameliorating Alzheimer's pathology in 5xFAD mice.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[10495] doi:10.1038/s42003-025-09108-2 [paper, repository]

Unraveling the mesoscale resting-state functional connectivity of ocular dominance columns in humans using high-resolution functional MRI.

Journal: Communications biology

Authors' code: figshare 29900252 (CC-BY-4.0), SchmidtME/meso-rs-fc (GPL-3.0), Zenodo 17368890 (GPL-3.0), Zenodo 17368889 (GPL-3.0)

Status: code verified, 122 files readable, 11 matches

[10496] doi:10.1038/s43587-025-01016-8 [paper, repository]

Organ-specific proteomic aging clocks predict disease and longevity across diverse populations.

Journal: Nature aging

Authors' code: 41way5/Organ-PAC (no license)

Status: code verified, 10 files readable, 21 matches

[10497] doi:10.1038/s44303-025-00129-4 [paper, repository]

A practical prescription for magnetic resonance microscopy in a horizontal bore magnet.

Journal: Npj imaging

Authors' code: BibekDhakal977/microSolenoidGeometryOptimizer (no license)

Status: code verified, 6 files readable, 5 matches

[10498] doi:10.1038/s44319-025-00534-1 [paper]

Proneurotrophin-3 contributes to chemotherapy-induced neuropathic pain through TrkC-mediated CCL2 elevation in DRG neurons.

Journal: EMBO reports

Status: data only

[10499] doi:10.1038/s44385-025-00045-7 [paper, repository]

Support field neural representation learner framework for learning stability landscapes in molecular geometry.

Journal: npj biomedical innovations

Authors' code: kenjiou/SFNRL (no license)

Status: code verified, 9 files readable, 3 matches

[10500] doi:10.1073/pnas.2515047122 [paper, data]

The sleep-wake history contributes to rhythmic BMAL1 chromatin binding in the cerebral cortex but not in the liver.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[10501] doi:10.1080/10717544.2025.2585612 [paper, data]

A surrogate barrier model for high-throughput blood-brain barrier permeability prediction: integrating LLC-PK1-MOCK/MDR1 Cells and lysosomal trapping correction.

Journal: Drug delivery

Status: data only, 1 dataset cited

[10502] doi:10.1088/1741-2552/ae1b3b [paper, repository]

Distance of bipolar re-referencing imparts nonlinear frequency-specific influences on intracranial recording signal measurements.

Journal: Journal of neural engineering

Authors' code: Kleen-Lab/Bipolar_Expedition (BSD-3-Clause)

Status: code verified, 327 files readable, 12 matches

[10503] doi:10.1088/1741-2552/ae1bdb [paper, repository]

Focal thalamic infrared neural stimulation propagates dynamical transformations in auditory cortex.

Journal: Journal of neural engineering

Authors' code: OSF jrn65 (no license), bscoventry/Focal-Infrared-Neural-Stimulation-Propagates-Dynamical-Transformations-in-A1 (no license), Zenodo 11086673 (CC-BY-4.0)

Status: code verified, 120 files readable, 11 matches

[10504] doi:10.1113/jp289233 [paper, repository]

Linking systemic metabolic state to long-term motor memory: Insights from respiratory exchange ratio and glucose manipulation.

Journal: The Journal of physiology

Authors' code: shadmehrlab.org/tools (no license)

Status: dead link

[10505] doi:10.1126/sciadv.adt5937 [paper, data]

MeCP2 interacts with the super elongation complex to regulate transcription.

Journal: Science advances

Status: data only, 1 dataset cited

[10506] doi:10.1126/sciadv.adt6316 [paper, data]

Widespread association of Polycomb complex-deposited histone H2A monoubiquitylation with enhancers and neuronal gene regulation.

Journal: Science advances

Status: data only, 1 dataset cited

[10507] doi:10.1126/sciadv.ady5507 [paper, data]

CTCF-RNA interactions orchestrate cell-specific chromatin loop organization.

Journal: Science advances

Status: data only, 2 datasets cited

[10508] doi:10.1126/sciadv.ady9659 [paper, repository]

View-invariant representations in ancestral cortex.

Journal: Science advances

Authors' code: EvolutionaryNeuralCodingLab/SpatiallySelectiveViewInvariance (no license)

Status: code verified, 23 files readable

[10509] doi:10.1161/jaha.125.040710 [paper, data]

Vascular and Neural Transcriptomics Reveal Stage-Dependent Pathways to Inflammation and Cognitive Dysfunction in a Rat Model of Hypertension.

Journal: Journal of the American Heart Association

Status: data only, 1 dataset cited

[10510] doi:10.1162/imag.a.1027 [paper, repository]

Multimodal MRI reveals consistent basal ganglia and limbic system alterations in COVID-19 survivors.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF ua6r3 (no license)

Status: code verified, 1 file readable

[10511] doi:10.1162/imag.a.1039 [paper, repository]

Age differences in electrocortical dynamics during uneven terrain walking.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: changliu-99/MindInMotion_AgeDifferences_UnevenTerrain (no license)

Status: code verified, 62 files readable, 10 matches

[10512] doi:10.1186/s12920-025-02249-7 [paper, data]

Transcriptomic profiling of DYT-TOR1A patient-derived iPSC reveals dysregulation in extracellular matrix, lipid metabolism, and Chr22q11.23.

Journal: BMC medical genomics

Status: data only, 1 dataset cited

[10513] doi:10.1186/s40035-025-00520-6 [paper, data]

Neurotrophic factor-α1/carboxypeptidase E regulates critical protein networks to rescue neurodegeneration, defective synaptogenesis and impaired autophagy in Alzheimer's disease mice.

Journal: Translational neurodegeneration

Status: data only, 1 dataset cited

[10514] doi:10.1186/s40478-025-02132-7 [paper, repository]

CISD2 ensures adequate ER-mitochondrial coupling, critically supporting mitochondrial function in neurons.

Journal: Acta neuropathologica communications

Authors' code: jensloncke/imagej_macros (no license), jensloncke/lmcs-python-scripts (no license)

Status: code verified, 49 files readable

[10515] doi:10.1371/journal.pbio.3003116 [paper, data]

Electrical Spinal Imaging: A noninvasive, high-resolution approach that enables electrophysiological mapping of the human spinal cord.

Journal: PLoS biology

Status: data only, 1 dataset cited

[10516] doi:10.1371/journal.pone.0337609 [paper, data]

Neural and endothelial cell-derived extracellular vesicles mediate Zika virus genome dissemination and productive infection in vivo.

Journal: PloS one

Status: data only, 1 dataset cited

[10517] doi:10.1523/jneurosci.0506-25.2025 [paper, repository]

Selective Attention Shapes Neural Representations of Complex Auditory Scenes: The Roles of Object Identity and Scene Composition.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF agxth (no license)

Status: code verified, 22 files readable, 2 matches

[10518] doi:10.3389/fgene.2025.1643921 [paper, repository]

OFGPMA: Optimal frequency graph representation learning for pseudogene and miRNA association prediction.

Journal: Frontiers in genetics

Authors' code: facebookresearch/shaDow_GNN (MIT)

Status: code verified, 33 files readable

[10519] doi:10.3389/fncom.2025.1647462 [paper, repository]

A neural network model combining the successor representation and actor-critic methods reveals effective biological use of the representation.

Journal: Frontiers in computational neuroscience

Authors' code: tkyktrm/frontiers (no license)

Status: code verified, 4 files readable

[10520] doi:10.3389/fpsyt.2025.1707099 [paper, data]

EEG microstate analysis between patients with major depressive disorder, subclinical depression, and healthy controls.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[10521] doi:10.3390/brainsci15121269 [paper]

Mixed-Frequency rTMS Rapidly Modulates Multiscale EEG Biomarkers of Excitation-Inhibition Balance in Autism Spectrum Disorder: A Single-Case Report.

Journal: Brain sciences

Status: code on request

[10522] doi:10.3390/plants14233607 [paper, repository]

Anatomical Markers for Identification and Standardization of <i>Crataegus mexicana</i>, Commercially Marketed as "Raíz de Tejocote".

Journal: Plants (Basel, Switzerland)

Authors' code: Zenodo 1195690 (CC-BY-NC-ND-4.0)

Status: empty repository

[10523] doi:10.3758/s13414-025-03180-w [paper, data]

Re-examining electrophysiological evidence for proactive suppression of salient visual distractors.

Journal: Attention, perception & psychophysics

Status: code on request, 1 dataset cited

[10524] doi:10.3758/s13414-025-03187-3 [paper]

The perceptual average in ensemble representation: Neither perceptual nor an average.

Journal: Attention, perception & psychophysics

Status: code on request

Tuesday, 25 November 2025 (43 papers, 4 on this page)

[10525] doi:10.1016/j.isci.2025.114204 [paper]

Growth factor-independent mTORC1 signaling promotes primary cilia length via suppression of autophagy.

Journal: iScience

Status: code on request

[10526] doi:10.1016/j.isci.2025.114212 [paper, repository]

Alpha power indexes working memory load for durations.

Journal: iScience

Authors' code: OSF p6m7s (no license), britta-wstnr/source_decoding (BSD-3-Clause), Zenodo 13340330 (CC-BY-4.0), mne-tools/mne-python (BSD-3-Clause)

Status: code verified, 993 files readable, 14 matches

[10527] doi:10.1016/j.isci.2025.114217 [paper, repository]

Targeting Cdc42 improves motor phenotype in Parkinson's disease mice and reveals age-dependent susceptibility to α-synuclein.

Journal: iScience

Authors' code: Zenodo 17597372 (CC-BY-4.0), DanzerLab/snRNA_PDMouseModel_Age (no license)

Status: code verified, 18 files readable, 9 matches

[10528] doi:10.1016/j.jbc.2025.110975 [paper, data]

Development of a VHH that inhibits the binding of neuronal pentraxin 2 to a postsynaptic glutamate receptor, AMPAR.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

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