Every paper, by date: page 55

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 55 of 200: 14 October 2025 to 7 October 2025.

Tuesday, 14 October 2025 (48 papers, 37 on this page)

[12097] doi:10.1038/s41467-025-64193-5 [paper, repository]

Transcriptional impacts of substance use disorder and HIV on human ventral midbrain neurons and microglia.

Journal: Nature communications

Authors' code: statgen/popscle (Apache-2.0), wckdouglas/diffexpr (MIT), Zenodo 16374248 (CC-BY-4.0), Zenodo 16374361 (CC-BY-4.0), Zenodo 16374393 (CC-BY-4.0), Zenodo 16374435 (CC-BY-4.0), Zenodo 16374482 (CC-BY-4.0), amwilson149/snrnaseq-step1-preprocessing (no license), amwilson149/snrnaseq-step2-cell-typing (no license), amwilson149/snrnaseq-step3-dea-setup (no license), amwilson149/snrnaseq-step4-run-deseq2 (no license), amwilson149/snrnaseq-step5-process-dea-results (no license)

Status: code verified, 226 files readable, 27 matches

[12098] doi:10.1038/s41593-025-02073-3 [paper, repository]

Region-specific drivers of CSF mobility measured with MRI in humans.

Journal: Nature neuroscience

Authors' code: lydianehirschler/CSF-STREAM (no license)

Status: code verified, 7 files readable, 1 match

[12099] doi:10.1038/s41593-025-02075-1 [paper, repository]

C9orf72 hexanucleotide repeat expansions impair microglial response in ALS.

Journal: Nature neuroscience

Authors' code: Zenodo 3703108 (other-open), vib-singlecell-nf/vsn-pipelines (GPL-3.0)

Status: code verified, 144 files readable, 1 match

[12100] doi:10.1038/s41598-025-08779-5 [paper, repository]

Comparison of three behavioral cardioception tasks and heartbeat evoked potentials in the same group of healthy volunteers.

Journal: Scientific reports

Authors' code: OSF c3qws (no license)

Status: empty repository

[12101] doi:10.1038/s41598-025-19727-8 [paper, data]

A novel approach hybrid of ensemble learning and 3-D CNN mechanism: early-stage diagnosis of Alzheimer's disease using EEG signals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12102] doi:10.1038/s41598-025-19800-2 [paper, repository]

Obesity dysregulates feeding-evoked response dynamics in hypothalamic satiety neurons.

Journal: Scientific reports

Authors' code: xzhang03/Photometry_analysis (no license)

Status: code verified, 144 files readable

[12103] doi:10.1038/s42003-025-08859-2 [paper, repository]

Single-cell DNA methylation analysis tool Amethyst resolves distinct non-CG methylation patterns in human astrocytes and oligodendrocytes.

Journal: Communications biology

Authors' code: adeylab/premethyst (MIT), ScaleBio/ScaleMethyl (other), molonc/Epiclomal (no license), lrylaarsdam/amethyst (MIT), lhqing/snmcat-seq_integration (MIT), Zenodo 16922952 (CC-BY-4.0), Zenodo 16922953 (CC-BY-4.0)

Status: code verified, 118 files readable, 39 matches

[12104] doi:10.1038/s42003-025-08870-7 [paper, repository]

Observational learning strategies impact the neural correlates of declarative memory formation.

Journal: Communications biology

Authors' code: OSF 8rcus (no license), payampiray/cbm (GPL-3.0)

Status: code verified, 28 files readable, 7 matches

[12105] doi:10.1038/s42003-025-08873-4 [paper, repository]

Edge participation coefficient unveiling the developmental dynamics of neonatal functional connectome.

Journal: Communications biology

Authors' code: brain-networks (no license), TianyuFang2000/ePC_master (no license)

Status: code verified, 18 files readable, 9 matches

[12106] doi:10.1038/s42003-025-08890-3 [paper, repository]

Genetically tractable embryonic cell lines from sea urchins Lytechinus variegatus and Strongylocentrotus purpuratus.

Journal: Communications biology

Authors' code: kcastellano13/Sea-urchin-cell-culture (no license), UrchinOmics/urchinCultures (no license), Zenodo 17057943 (CC-BY-4.0), Zenodo 17064287 (CC-BY-4.0)

Status: code verified, 56 files readable, 10 matches

[12107] doi:10.1038/s42003-025-08933-9 [paper, repository]

Heartbeat perception is causally linked to frontal delta oscillations.

Journal: Communications biology

Authors' code: davidhaslacher/clam-nibs (MIT), davidhaslacher/sass (no license)

Status: code verified, 18 files readable, 5 matches

[12108] doi:10.1038/s42003-025-08967-z [paper]

Role of CaMKIIa reticular neurons of caudal medulla in control of posture.

Journal: Communications biology

Status: code on request

[12109] doi:10.1038/s44184-025-00165-3 [paper]

Prefrontal and parieto-occipital neural signatures of evidence accumulation and response to computerised Cognitive Behavioural Therapy in depression.

Journal: Npj mental health research

Status: code on request

[12110] doi:10.1038/s44318-025-00591-1 [paper, data]

Ubiquilin-2 liquid droplets catalyze α-synuclein fibril formation.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[12111] doi:10.1073/pnas.2500511122 [paper, repository]

Spontaneous activity of astrocytes is a stochastic functional signal for memory consolidation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: rattolab/spontaneous-activity-of-astrocytes-is-a-stochastic-yet-functional-signal-for-memory-consolidation (GPL-3.0)

Status: code verified, 19 files readable, 1 match

[12112] doi:10.1073/pnas.2506243122 [paper, data]

Fundamental features of social environments determine rate of social affiliation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[12113] doi:10.1093/braincomms/fcaf393 [paper, repository]

Hypoperfusion-related functional abnormalities of middle cerebral artery stenotic-occlusive disease.

Journal: Brain communications

Authors' code: yinxi-zou/MCAso-hypoperfusion-functional-abnormality-code (no license)

Status: code verified, 39 files readable

[12114] doi:10.1093/braincomms/fcaf396 [paper, repository]

Enduring prenatal androgen effects on the female brain.

Journal: Brain communications

Authors' code: mathworks.com/products/matlab (no license), people.kyb.tuebingen.mpg.de/spider/main.html (no license)

Status: code found, still to be checked

[12115] doi:10.1093/braincomms/fcaf397 [paper]

New treatment for pyridoxine-dependent epilepsy due to ALDH7A1 deficiency: first proof-of-principle of upstream enzyme inhibition in the mouse.

Journal: Brain communications

Status: code on request

[12116] doi:10.1093/braincomms/fcaf399 [paper, repository]

Stepwise connectivity of the entorhinal cortex along connectomic gradients in Alzheimer's disease.

Journal: Brain communications

Authors' code: MICA-MNI/BrainSpace (BSD-3-Clause), AICONSlab/stepwise_connectivity (no license)

Status: code verified, 129 files readable, 1 match

[12117] doi:10.1162/imag.a.905 [paper, repository]

An efficient multifunction fMRI localizer for high-level visual, auditory, and cognitive regions in humans.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: aimarvi/efficient_localizer (no license), aimarvi/emfl_analysis (no license)

Status: code verified, 37 files readable, 3 matches

[12118] doi:10.1162/imag.a.922 [paper, repository]

The RF Cap: A 26-channel flexible RF coil cap for optimized concurrent TMS/fMRI experiments at 3T.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: lunade/MATLAB_SNR_gfactors_tools (other)

Status: code verified, 54 files readable

[12119] doi:10.1186/s12864-025-12111-w [paper, repository]

Long-read sequencing-based analyses of the adult Drosophila brain transcriptome in physiological and pathological settings.

Journal: BMC genomics

Authors' code: Zenodo 15603223 (CC-BY-4.0)

Status: code verified, 24 files readable, 6 matches

[12120] doi:10.1186/s12883-025-04445-5 [paper, repository]

Preoperative prediction of brain invasion in meningiomas: a comparison of diffusion kurtosis imaging and diffusion tensor imaging.

Journal: BMC neurology

Authors' code: salan668/FAE (Apache-2.0)

Status: code verified, 95 files readable

[12121] doi:10.1186/s12911-025-03213-2 [paper]

Dynamic fall risk prediction in hospitalized cancer patients: development and validation of a machine learning model using multidimensional clinical data to overcome over-sensitivity in traditional scales.

Journal: BMC medical informatics and decision making

Status: code on request

[12122] doi:10.1186/s12933-025-02888-1 [paper]

Genetic variation in the glucagon-like peptide-1 receptor protein encoding region is associated with higher heart rate variability, but not with neurodegeneration of the brain, retina, and peripheral nerves: The Maastricht study.

Journal: Cardiovascular diabetology

Status: code on request

[12123] doi:10.1186/s12974-025-03551-y [paper, data]

IL-1β<sup>+</sup> tumor-associated macrophages accelerate glioblastoma progression by amplifying the PGE2-EP4 signaling.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[12124] doi:10.1186/s13104-025-07499-3 [paper, data]

Enhancing learning skills in children by using assistive technology: a psychophysiological database.

Journal: BMC research notes

Status: data only, 2 datasets cited

[12125] doi:10.1186/s13195-025-01865-w [paper, data]

Protein fingerprints of brain-derived extracellular vesicles predict types of tau pathology.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[12126] doi:10.1371/journal.pbio.3002806 [paper, data]

Combining gamma neuromodulation and robotic rehabilitation after a stroke restores parvalbumin interneuron dynamics and improves motor recovery in mice.

Journal: PLoS biology

Status: data only, 2 datasets cited

[12127] doi:10.1371/journal.pbio.3003159 [paper, repository]

The superficial layers of the primary visual cortex create a saliency map that feeds forward to the parietal cortex.

Journal: PLoS biology

Authors' code: herrlich10/mripy (MIT)

Status: code verified, 70 files readable, 5 matches

[12128] doi:10.1371/journal.pone.0332422 [paper, data]

Exposure to the organochlorine pesticide cis-chlordane induces ALS-like mitochondrial perturbations in stem cell-derived motor neurons.

Journal: PloS one

Status: data only, 1 dataset cited

[12129] doi:10.2147/nss.s550127 [paper, data]

Exploring Causal Pathways to Sleep Quality in Young Adults Using a Multimodal Data-Driven Causal Discovery Analysis.

Journal: Nature and science of sleep

Status: code on request, 1 dataset cited

[12130] doi:10.3389/fnmol.2025.1671354 [paper, data]

Schizophrenia risk gene ZNF536 modulates retinoic acid response and neuronal gene networks in SH-SY5Y cells.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[12131] doi:10.3390/ijms262010003 [paper, data]

Network-Medicine-Guided Drug Repurposing for Alzheimer's Disease: A Multi-Dimensional Systems Pharmacology Approach.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[12132] doi:10.3390/ijms262010004 [paper, repository]

Comparative Study on Modulation of Synchronized Neuronal Activity by SK Channels and Na/K-ATPase.

Journal: International journal of molecular sciences

Authors' code: orlandi/netcal (MIT), Zenodo 1119026 (MIT)

Status: code verified, 2,374 files readable, 2 matches

[12133] doi:10.3390/neurosci6040105 [paper, data]

Frontal Regions and Executive Function Testing: A Doubted Association Shown by Brain-Injured Patients.

Journal: NeuroSci

Status: data only, 1 dataset cited

Monday, 13 October 2025 (35 papers)

[12134] doi:10.1002/mrm.70114 [paper, repository]

High-resolution deuterium metabolic imaging of the human brain at 9.4 T using phase-cycled balanced SSFP spectral-spatial acquisitions.

Journal: Magnetic resonance in medicine

Authors' code: praveenivp/DeuteMetcon (MIT)

Status: code verified, 157 files readable, 13 matches

[12135] doi:10.1002/mrm.70124 [paper, repository]

Denoising Low-Power CEST Imaging Using a Deep Learning Approach With a Dual-Power Feature Preparation Strategy.

Journal: Magnetic resonance in medicine

Authors' code: CESTlabZu (no license)

Status: code verified

[12136] doi:10.1007/s00429-025-03013-4 [paper]

Savings in visuomotor learning are associated with connectivity changes within a cerebello-thalamo-cortical network encoding movement errors.

Journal: Brain structure & function

Status: code on request

[12137] doi:10.1016/j.isci.2025.113755 [paper, repository]

Mapping content and dynamics in the stream of consciousness through latent brain state analysis.

Journal: iScience

Authors' code: DijunQuant/Thinkaloud_HMM_public (no license)

Status: code verified, 5 files readable, 5 matches

[12138] doi:10.1016/j.omtn.2025.102742 [paper]

Comparison of <i>MALAT1</i> antisense oligonucleotide distribution following intracerebroventricular and lumbar intrathecal routes of administration.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[12139] doi:10.1016/j.xpro.2025.104142 [paper]

Protocol for purifying primitive neural progenitors by fractional passaging to generate astroglia-enriched cerebral organoid.

Journal: STAR protocols

Status: code on request

[12140] doi:10.1038/s41377-025-01900-3 [paper, repository]

Image scanning microscopy based on multifocal metalens for sub-diffraction-limited imaging of brain organoids.

Journal: Light, science & applications

Authors' code: openUC2/UC2_ISM_CODE (no license)

Status: code verified, 20 files readable

[12141] doi:10.1038/s41467-025-64132-4 [paper, data]

Dopamine dynamics during stimulus-reward learning in mice can be explained by performance rather than learning.

Journal: Nature communications

Status: data only, 1 dataset cited

[12142] doi:10.1038/s41467-025-64136-0 [paper, repository]

Integrated single-cell multiomic profiling of caudate nucleus suggests key mechanisms in alcohol use disorder.

Journal: Nature communications

Authors' code: saeyslab/multinichenetr (GPL-3.0), nick-c-green/Caudate-scMultiome (no license), Zenodo 16576728 (CC-BY-4.0)

Status: code verified, 75 files readable, 19 matches

[12143] doi:10.1038/s41467-025-64405-y [paper, repository]

Astrocytes modulate neuronal development by S100A6 signaling.

Journal: Nature communications

Authors' code: harkany-lab.github.io/cinquina_2024 (no license)

Status: code verified

[12144] doi:10.1038/s41467-025-64676-5 [paper, repository]

Allocentric flocking.

Journal: Nature communications

Authors' code: figshare 28925888 (CC-BY-4.0)

Status: code verified, 1 file readable

[12145] doi:10.1038/s41467-025-64980-0 [paper, repository]

Capturing disease severity in LIS1-lissencephaly reveals proteostasis dysregulation in patient-derived forebrain organoids.

Journal: Nature communications

Authors' code: Zenodo 16895539 (CC-BY-4.0), lzillich/lis1_code (no license)

Status: code verified, 50 files readable, 19 matches

[12146] doi:10.1038/s41598-025-18794-1 [paper, repository]

Whole organism integrated DNA methylation and transcriptomics analysis of butterfly metamorphosis.

Journal: Scientific reports

Authors' code: Zenodo 15837799 (CC-BY-4.0)

Status: code verified, 9 files readable, 3 matches

[12147] doi:10.1038/s41598-025-19664-6 [paper, repository]

Streamlined and efficient patient-specific modeling for lumbar spine segmentation and finite element analysis.

Journal: Scientific reports

Authors' code: Zenodo 17051686 (CC-BY-4.0)

Status: code verified, 735 files readable, 18 matches

[12148] doi:10.1038/s42003-025-08784-4 [paper, repository]

Demonstration of chemotherapeutic-mediated changes in meningeal lymphatics in vitro, ex vivo, and in vivo.

Journal: Communications biology

Authors' code: avaccari/Lymph4D (GPL-3.0)

Status: code verified, 28 files readable

[12149] doi:10.1073/pnas.2425388122 [paper, data]

Functional organization of the primary motor cortex in psychosis and the potential role of intereffector regions in psychomotor slowing.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[12150] doi:10.1073/pnas.2504382122 [paper, repository]

Neural predictors of hidden, persistent psychological states at work.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 39p8m (no license), OSF kygbm (no license), abinnquist/fNIRSpreProcessing (no license)

Status: code verified, 74 files readable, 8 matches

[12151] doi:10.1073/pnas.2510486122 [paper, repository]

Sex differences in healthy brain aging are unlikely to explain higher Alzheimer's disease prevalence in women.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: anneravndal/sex_differences_brain_change (no license)

Status: code verified, 35 files readable, 6 matches

[12152] doi:10.1073/pnas.2510619122 [paper, data]

Apusomonad rhodopsins: A new family of ultraviolet to blue light-absorbing rhodopsin channels.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 5 datasets cited

[12153] doi:10.1093/braincomms/fcaf389 [paper, repository]

Obesity accelerates brain ageing: a multimodal imaging study.

Journal: Brain communications

Authors' code: CCNL-UniPD/brain_age_obesity (no license)

Status: code verified, 5 files readable, 6 matches

[12154] doi:10.1111/acel.70148 [paper, repository]

Perinatal Choline Supplementation Promotes Resilience Against Progression of Alzheimer's Disease-Like Brain Transcriptomic Signatures in App<sup>NL-G-F</sup> Mice.

Journal: Aging cell

Authors' code: krunican/RNAseq-Code (no license)

Status: dead link

[12155] doi:10.1186/s12916-025-04425-z [paper, data]

Association between pro-inflammatory proteins and neurofilament in plasma from persons with epilepsy.

Journal: BMC medicine

Status: data only, 1 dataset cited

[12156] doi:10.1242/jcs.264088 [paper, data]

The superficial tufted and mitral cell output neurons of the mouse olfactory bulb have dual roles in insulin sensing.

Journal: Journal of cell science

Status: data only, 1 dataset cited

[12157] doi:10.1371/journal.pbio.3002893 [paper, data]

Identification and characterization of tumor-associated astrocyte subpopulations and their interactions with the tumor microenvironment in experimental glioblastomas.

Journal: PLoS biology

Status: data only, 1 dataset cited

[12158] doi:10.1371/journal.pbio.3003419 [paper, repository]

Hippocampal pyramidal cells of the CA1 region are not a major target of the thalamic nucleus reuniens.

Journal: PLoS biology

Authors' code: supp:PMC12530533/pbio.3003419.s008.R (no license)

Status: code verified, 1 file readable

[12159] doi:10.1371/journal.pcbi.1012986 [paper, repository]

Understanding the mechanism of facilitation in hoverfly TSDNs.

Journal: PLoS computational biology

Authors' code: anindyaghosh/TSDN_facilitation (no license)

Status: code verified, 7 files readable, 10 matches

[12160] doi:10.1371/journal.pone.0333903 [paper, repository]

EEG difference in the Higuchi fractal dimension of wakefulness and sleep from birth to adolescence.

Journal: PloS one

Authors' code: supp:PMC12517535/pone.0333903.s003.m (no license)

Status: code verified, 1 file readable, 1 match

[12161] doi:10.3390/bioengineering12101102 [paper, data]

Artificial Intelligence in Cardiac Electrophysiology: A Clinically Oriented Review with Engineering Primers.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[12162] doi:10.3390/genes16101191 [paper, data]

PRC2 Diversity in Neuronal Differentiation and Developmental Disorders.

Journal: Genes

Status: data only, 1 dataset cited

[12163] doi:10.3390/jcm14207221 [paper]

Outcomes of Strabismus Surgery in Patients with Cranial Nerve Palsy.

Journal: Journal of clinical medicine

Status: code on request

[12164] doi:10.3390/jimaging11100359 [paper, repository]

Non-Contrast Brain CT Images Segmentation Enhancement: Lightweight Pre-Processing Model for Ultra-Early Ischemic Lesion Recognition and Segmentation.

Journal: Journal of imaging

Authors' code: itmo-cv-lab/BrainCT (no license)

Status: code verified, 11 files readable, 6 matches

[12165] doi:10.7554/elife.100937 [paper, repository]

Shared functional organization between pulvinar-cortical and cortico-cortical connectivity and its structural and molecular imaging correlates.

Journal: eLife

Authors' code: sensein/mapalign (Apache-2.0), BrainMappingLab/Pulvinar-Gradients-Multimodal (MIT)

Status: code verified, 60 files readable, 14 matches

[12166] doi:10.7554/elife.101688 [paper, repository]

Transcranial direct current stimulation modulates primate brain dynamics across states of consciousness.

Journal: eLife

Authors' code: krigsa/phase_coherence_kmeans (MIT)

Status: code verified, 3 files readable, 2 matches

[12167] doi:10.7554/elife.106387 [paper, repository]

Age and learning shapes sound representations in auditory cortex during adolescence.

Journal: eLife

Authors' code: benne1295/Age-and-Learning-Shapes-Sound-Representations-in-Auditory-Cortex-During-Adolescence (no license)

Status: code verified, 26 files readable, 12 matches

[12168] doi:10.7554/elife.96718 [paper, data]

Synchronous ensembles of hippocampal CA1 pyramidal neurons during novel exploration.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 12 October 2025 (5 papers)

[12169] doi:10.1002/mrm.70106 [paper, repository]

Mitigating banding artifacts in balanced steady-state free precession using parallel transmission in a single acquisition.

Journal: Magnetic resonance in medicine

Authors' code: yinwu26/dualPTxPulse (no license), mchiew/grappa-tools (no license)

Status: code verified, 40 files readable, 2 matches

[12170] doi:10.1016/j.dcn.2025.101629 [paper, repository]

Tracking functional brain networks in preterm and term infants using precision mapping.

Journal: Developmental cognitive neuroscience

Authors' code: mandymejia/templateICAr (no license), FerradalLab/babyBayes (GPL-3.0)

Status: code verified, 46 files readable, 8 matches

[12171] doi:10.1016/j.neubiorev.2025.106418 [paper, repository]

A bias-accounting meta-analytic approach refines and expands the cerebellar behavioral topography.

Journal: Neuroscience and biobehavioral reviews

Authors' code: amnsbr/nimare-gpu (no license), CNG-LAB/cerebellum_specific_ALE (MIT), CNG-LAB/nimare-gpu (no license), xaviergp/littlebrain (Apache-2.0), Zenodo 8359277 (MIT), neurostuff/nimare (MIT)

Status: code verified, 314 files readable, 7 matches

[12172] doi:10.1159/000548758 [paper, data]

Middle Meningeal Artery Collateralization Patterns and Influencing Factors in Pediatric Moyamoya.

Journal: Cerebrovascular diseases (Basel, Switzerland)

Status: data only, 1 dataset cited

[12173] doi:10.3390/ijms26209923 [paper, repository]

Genome-Wide Inference of Essential Genes in <i>Dirofilaria immitis</i> Using Machine Learning.

Journal: International journal of molecular sciences

Authors' code: Zenodo 15368523 (CC-BY-4.0)

Status: code verified

Saturday, 11 October 2025 (11 papers)

[12174] doi:10.1007/s11481-025-10254-x [paper, data]

Differential Effects of Cannabinoid Receptor 2 Agonists on HIV Replication and Inflammatory Activation in Monocyte-Derived Macrophages and Induced Pluripotent Stem Cell-Derived Microglia.

Journal: Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology

Status: data only, 1 dataset cited

[12175] doi:10.1016/j.nicl.2025.103889 [paper, repository]

Genetic drivers of hippocampal atrophy highlight the role of APOE functional variants and AD polygenicity in Mild Cognitive Impairment.

Journal: NeuroImage. Clinical

Authors' code: GeneticNeuroStats/Mixed-effect-model-brain-genetic-trajectories (no license)

Status: code verified, 19 files readable, 4 matches

[12176] doi:10.1016/j.ymthe.2025.10.022 [paper]

Extracellular vesicles-associated AAVs for the treatment of Machado-Joseph disease.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: code on request

[12177] doi:10.1080/19768354.2025.2569881 [paper, data]

LncRNA-mRNA integrated networks in the neuroendocrine system of bisphenol a-treated mice induce cellular dysfunctions by disrupting transcriptional homeostasis.

Journal: Animal cells and systems

Status: data only, 1 dataset cited

[12178] doi:10.1111/cas.70218 [paper, data]

COL6A2: A Key Survival-Related Gene and Restricting Antitumor Immunity in Glioblastoma.

Journal: Cancer science

Status: data only, 1 dataset cited

[12179] doi:10.1186/s12974-025-03559-4 [paper, data]

Early immune responses to systemic inflammation in the postnatal mouse brain initiated by migrating macrophages and leptomeningeal fibroblasts.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[12180] doi:10.3390/biom15101438 [paper, repository]

Transcriptional Profiling Defines Unique Subtypes of Transit Amplifying Neural Progenitors Within the Neonatal Mouse Subventricular Zone.

Journal: Biomolecules

Authors' code: LevisonLab/ZaritskyKumari2025 (no license)

Status: empty repository, 1 file readable

[12181] doi:10.3390/biomedicines13102478 [paper, repository]

Dissociation of Clinical Outcomes and CSF Proteinopathy Biomarkers in Parkinson's Disease: Cognitive-Affective Dissociation with Specificity for Tau.

Journal: Biomedicines

Authors' code: Zenodo 17012543 (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[12182] doi:10.3390/children12101374 [paper, data]

The Short-Term Impact of Decompressive Craniectomy in Pediatric Patients with Severe Traumatic Brain Injury: A Retrospective Matched Cohort Study.

Journal: Children (Basel, Switzerland)

Status: data only, 1 dataset cited

[12183] doi:10.3390/e27101056 [paper, repository]

An Information-Theoretic Framework for Understanding Learning and Choice Under Uncertainty.

Journal: Entropy (Basel, Switzerland)

Authors' code: DartmouthCCNL/woo_etal_entropy (no license)

Status: code verified, 29 files readable, 8 matches

[12184] doi:10.3390/ijms26209909 [paper, data]

Molecular Signature in Focal Cortical Dysplasia: A Systematic Review of RNA and Protein Data.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 10 October 2025 (35 papers)

[12185] doi:10.1016/j.dcn.2025.101630 [paper, repository]

Meaningful Associations Redux: Quantifying and interpreting effect size in the context of the Adolescent Brain and Cognitive Development study.

Journal: Developmental cognitive neuroscience

Authors' code: anthonystevendick/Meaningful-Effects-Redux (MIT)

Status: code verified, 22 files readable

[12186] doi:10.1016/j.dib.2025.112160 [paper, data]

Electrophysiological data showing the acute alcohol effect on neuronal excitability in the murine posterior parietal cortex.

Journal: Data in brief

Status: data only, 1 dataset cited

[12187] doi:10.1016/j.isci.2025.113735 [paper, data]

Proximity interactome mapping furthers a role for spinophilin in protein homeostasis.

Journal: iScience

Status: code on request, 1 dataset cited

[12188] doi:10.1016/j.isci.2025.113737 [paper, data]

The distinct roles of TGF-β signaling in retinal development.

Journal: iScience

Status: code on request, 1 dataset cited

[12189] doi:10.1016/j.neuroimage.2025.121524 [paper]

Chronic radon exposure is associated with developmental alterations to neural and behavioral indices of cognitive control.

Journal: NeuroImage

Status: code on request

[12190] doi:10.1016/j.neuron.2025.09.022 [paper, repository]

Integrated omics reveals disease-associated radial glia-like cells with epigenetically dysregulated interferon response in multiple sclerosis.

Journal: Neuron

Authors' code: Zenodo 15581507 (CC-BY-4.0), Zenodo 15584699 (CC-BY-4.0), core-bioinformatics/darg_pms (no license), GliaOmicsLab/ST_PMS_DARGs (no license)

Status: code verified, 108 files readable, 15 matches

[12191] doi:10.1017/s0033291725102006 [paper, repository]

From risk to chronicity: genetic and neuroimaging insights into the evolving patterns of spontaneous brain activity in schizophrenia.

Journal: Psychological medicine

Authors' code: thewonlab/H-MAGMA (no license)

Status: code verified, 7 files readable

[12192] doi:10.1038/s41380-025-03288-3 [paper, repository]

Alzheimer's disease and memantine effects on NMDA-receptor blockade: non-invasive in vivo insights from magnetoencephalography.

Journal: Molecular psychiatry

Authors' code: jlansk/NMDA_blockade (no license)

Status: code verified, 19 files readable, 9 matches

[12193] doi:10.1038/s41398-025-03604-z [paper]

Novel electroencephalographic biomarkers for the prediction of responders to an experimental glutamatergic agent in patients with schizophrenia.

Journal: Translational psychiatry

Status: code on request

[12194] doi:10.1038/s41398-025-03632-9 [paper, repository]

Brain network localization of structural and functional abnormality associated with aggression.

Journal: Translational psychiatry

Authors' code: remenderfdif/FCNM (no license)

Status: code verified, 4 files readable

[12195] doi:10.1038/s41398-025-03648-1 [paper]

Demographic, genetic, neuroimaging, and behavioral correlates of short social responsiveness scale in a large pediatric cohort.

Journal: Translational psychiatry

Status: code on request

[12196] doi:10.1038/s41467-025-63829-w [paper, data]

Estrogen-related receptor gene expression associates with sex differences in cortical atrophy in isolated REM sleep behavior disorder.

Journal: Nature communications

Status: data only, 1 dataset cited

[12197] doi:10.1038/s41598-025-19624-0 [paper, repository]

Gene-environment-brain topology reveals clinical subtypes of depression in UK Biobank.

Journal: Scientific reports

Authors' code: OSF 2se7r (no license)

Status: code verified, 3 files readable, 4 matches

[12198] doi:10.1038/s41598-025-21802-z [paper, repository]

Chronic alcohol-induced brain states limit propagation of direct cortical stimulation.

Journal: Scientific reports

Authors' code: habeltb/Multimodal_ECoG_ratPFC_alcoholism (MIT)

Status: code verified, 6 files readable, 5 matches

[12199] doi:10.1038/s42003-025-08857-4 [paper, repository]

Neural representation of mixed feelings during real-time processing of negative words in pun-humor.

Journal: Communications biology

Authors' code: OSF n7bkc (no license)

Status: code verified, 6 files readable, 3 matches

[12200] doi:10.1038/s42003-025-08858-3 [paper, repository]

Temporal recurrence as a general mechanism to explain neural responses in the auditory system.

Journal: Communications biology

Authors' code: urancon/deepSTRF (GPL-3.0)

Status: code verified, 141 files readable, 19 matches

[12201] doi:10.1038/s44321-025-00316-1 [paper, repository]

Glia inflammation and cell death pathways drive disease progression in preclinical and early AD.

Journal: EMBO molecular medicine

Authors' code: tnl-mcsa/code-and-material-for-publications (CC0-1.0)

Status: code verified, 3 files readable, 4 matches

[12202] doi:10.1063/5.0288838 [paper, repository]

When <i>in vitro</i> is not enough: <i>In silico</i> strategies to investigate functional and dynamical properties of large-scale neuronal assemblies.

Journal: APL bioengineering

Authors' code: dbbs-lab/bsb (GPL-3.0)

Status: code verified, 377 files readable

[12203] doi:10.1073/pnas.2503181122 [paper, repository]

Inter- and intrahemispheric sources of vestibular signals to V1.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: sanzeni/vestibular-v1-sources (MIT)

Status: code verified, 5 files readable, 1 match

[12204] doi:10.1093/braincomms/fcaf394 [paper, repository]

Cognitive training reorganizes lateralization of fronto-parietal network in vascular cognitive impairment.

Journal: Brain communications

Authors' code: xinhu-jin/vcind (no license)

Status: code verified, 33 files readable

[12205] doi:10.1093/pnasnexus/pgaf284 [paper, repository]

Learning and inference with correlated neural variability.

Journal: PNAS nexus

Authors' code: BrainsoupFactory/moment-neural-network (Apache-2.0)

Status: code verified, 90 files readable, 2 matches

[12206] doi:10.1113/ep093267 [paper, repository]

Spontaneous Ca<sup>2+</sup> signals in the developing mammalian cochlea of live mice under different anaesthetic regimes.

Journal: Experimental physiology

Authors' code: Marcotti-Lab/invivo-IHC-cochlea (GPL-3.0), Zenodo 14191510 (CC-BY-4.0), fedeceri85/abrwaveanalyser (Apache-2.0)

Status: code verified, 28 files readable, 2 matches

[12207] doi:10.1136/jitc-2025-011709 [paper, data]

Claudin 6 is a suitable target for CAR T-cell therapy in atypical teratoid/rhabdoid brain tumors and other pediatric solid tumors.

Journal: Journal for immunotherapy of cancer

Status: data only, 1 dataset cited

[12208] doi:10.1162/imag.a.924 [paper, repository]

Disarming emotional memories using targeted memory reactivation during rapid eye movement sleep.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: mnavarretem/psgScore (GPL-3.0), MahmoudAbdellahi/Lively_Vectors (MIT)

Status: code verified, 179 files readable, 2 matches

[12209] doi:10.1162/imag.a.932 [paper, repository]

Automated segmentation of multiple sclerosis lesions, paramagnetic rims, and central vein sign on MRI provides reliable diagnostic biomarkers.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: hufengling/ALPaCA (other), hufengling/ALPaCA_analyses (no license)

Status: code verified, 151 files readable, 11 matches

[12210] doi:10.1186/s12937-025-01199-1 [paper, repository]

The relationship between vitamin D levels and depression: a genetically informed study.

Journal: Nutrition journal

Authors' code: BioPsyk/cleansumstats (no license)

Status: code verified, 135 files readable

[12211] doi:10.1186/s12998-025-00606-y [paper, data]

Exploring the use of manual therapy in the management of traumatic brain injury: a scoping review.

Journal: Chiropractic & manual therapies

Status: data only, 1 dataset cited

[12212] doi:10.1371/journal.pcbi.1013543 [paper, repository]

Learning spatial hearing via innate mechanisms.

Journal: PLoS computational biology

Authors' code: YangTrue/Learning-spatial-hearing-via-innate-mechanisms (BSD-3-Clause)

Status: code verified, 45 files readable, 8 matches

[12213] doi:10.1371/journal.pone.0334430 [paper, data]

Advanced deep learning-based brain tumor classification using a novel customized CNN and optimized residual network.

Journal: PloS one

Status: data only, 1 dataset cited

[12214] doi:10.3389/fneur.2025.1602173 [paper, data]

Grey matter volume and fractional anisotropy as biomarkers of cognitive change in traumatic brain injury over a 6-month period.

Journal: Frontiers in neurology

Status: data only, 2 datasets cited

[12215] doi:10.3389/fnhum.2025.1651332 [paper, data]

Modeling dyslexia in neurotypical adults by combining neuroimaging and neuromodulation techniques: a hypothesis paper.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[12216] doi:10.3389/frai.2025.1662984 [paper, repository]

Search-optimized quantization in biomedical ontology alignment.

Journal: Frontiers in artificial intelligence

Authors' code: OussamaBouaggad/Quantization (MIT)

Status: code verified, 14 files readable, 10 matches

[12217] doi:10.3390/cimb47100836 [paper, data]

Dietary Acrylamide Induces Depression via <i>SIRT3</i>-Mediated Mitochondrial Oxidative Injury: Evidence from Multi-Omics and Mendelian Randomization.

Journal: Current issues in molecular biology

Status: data only, 1 dataset cited

[12218] doi:10.3390/diagnostics15202559 [paper, data]

An Explainable Web-Based Diagnostic System for Alzheimer's Disease Using XRAI and Deep Learning on Brain MRI.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[12219] doi:10.3390/genes16101178 [paper]

Conserved Blood Transcriptome Patterns Highlight microRNA and Hub Gene Drivers of Neurodegeneration.

Journal: Genes

Status: data only

Thursday, 9 October 2025 (34 papers)

[12220] doi:10.1007/s00401-025-02948-6 [paper]

Tumor-associated macrophages in meningiomas: a novel biomarker for poor survival outperforming the benefits of T cells.

Journal: Acta neuropathologica

Status: data only

[12221] doi:10.1016/j.isci.2025.113712 [paper, data]

TAOK2 controls synaptic plasticity and anxiety via ERK and calcium signaling.

Journal: iScience

Status: data only, 1 dataset cited

[12222] doi:10.1016/j.isci.2025.113726 [paper, data]

CHD7 regulates cardiac neural crest cell differentiation through SOX5-mediated self-activation.

Journal: iScience

Status: code on request, 1 dataset cited

[12223] doi:10.1021/acsomega.5c07084 [paper, data]

Silodosin as a Novel Inhibitor of Acetylcholinesterase, Butyrylcholinesterase, and BETA-Secretase 1: In Vitro and In Silico Studies.

Journal: ACS omega

Status: data only, 3 datasets cited

[12224] doi:10.1038/s41380-025-03280-x [paper, repository]

Cortical microstructure is associated with disease severity and clinical progression in genetic frontotemporal dementia: a GENFI study.

Journal: Molecular psychiatry

Authors' code: vmontalb/diffusion-on-surface (no license)

Status: code verified, 4 files readable, 1 match

[12225] doi:10.1038/s41467-025-64034-5 [paper, data]

Brain-infiltrating CD4 T cells drive inflammatory microglia proliferation during cryptococcal meningitis in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[12226] doi:10.1038/s41467-025-64063-0 [paper, data]

ZMYND11 functions in bimodal regulation of latent genes and brain-like splicing to safeguard corticogenesis.

Journal: Nature communications

Status: data only, 1 dataset cited

[12227] doi:10.1038/s41522-025-00830-7 [paper]

TNF-α modulation by rice bran peptides: implications for gut microbiota stability and cognitive health in aging.

Journal: NPJ biofilms and microbiomes

Status: code on request

[12228] doi:10.1038/s41598-025-03752-8 [paper, repository]

A deep ensemble learning framework for brain tumor classification using data balancing and fine-tuning.

Journal: Scientific reports

Authors' code: alamintalukdercsejnu/BTC-DL (no license)

Status: code verified, 2 files readable, 8 matches

[12229] doi:10.1038/s41598-025-19395-8 [paper, data]

IoMT driven Alzheimer's prediction model empowered with transfer learning and explainable AI approach in healthcare 5.0.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12230] doi:10.1038/s41598-025-19425-5 [paper, repository]

Impact of visual preferences for indoor green walls on emotion and brain activity of college students.

Journal: Scientific reports

Authors' code: zhangnan916/Green-wall-data (no license)

Status: code verified, 4 files readable, 2 matches

[12231] doi:10.1038/s41598-025-22705-9 [paper]

QuKAN: A Quantum Circuit Born Machine Approach to Quantum Kolmogorov Arnold Networks.

Journal: Scientific reports

Status: code on request

[12232] doi:10.1093/pnasnexus/pgaf320 [paper, repository]

Encoding of interdependent features of head direction and angular head velocity in navigation.

Journal: PNAS nexus

Authors' code: dongqin/HD-AHV-ANN-decoding-analysis (no license)

Status: code verified, 3 files readable, 4 matches

[12233] doi:10.1097/ms9.0000000000004049 [paper, data]

P4HB regulates tumor-associated macrophage polarization and chemotaxis by enhancing IL-6 cytokine secretion in glioblastoma.

Journal: Annals of medicine and surgery (2012)

Status: code on request, 2 datasets cited

[12234] doi:10.1098/rsta.2024.0423 [paper, repository]

Variational quantum and neural quantum states algorithms for the linear complementarity problem.

Journal: Philosophical transactions. Series A, Mathematical, physical, and engineering sciences

Authors' code: shravanvn/CV-quantum4ccp (no license), oliverknitter/VNLS_CSR (Apache-2.0), Zenodo 16780399 (Apache-2.0)

Status: code verified, 74 files readable, 2 matches

[12235] doi:10.1101/2025.10.08.25337337 [paper, data]

24S-Hydroxycholesterol: A potential brain-derived biomarker of Huntington’s Disease

Journal: medRxiv (preprint)

Status: data only, 1 dataset cited

[12236] doi:10.1159/000548737 [paper, data]

Early Electroencephalography and Amplitude-Integrated Electroencephalography for the Prediction of Neurodevelopmental Outcomes in Neonates with Hypoxic Ischemic Encephalopathy: A Systematic Review and Diagnostic Test Accuracy Meta-Analysis.

Journal: Neonatology

Status: data only, 1 dataset cited

[12237] doi:10.1162/imag.a.912 [paper]

Riemannian diffusion kernel-smoothed continuous structural connectivity on cortical surface.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[12238] doi:10.1162/imag.a.920 [paper, repository]

A non-invasive approach to awake mouse fMRI compatible with multi-modal techniques.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF tyhce (no license)

Status: code verified, 7 files readable, 1 match

[12239] doi:10.1186/s12862-025-02450-3 [paper, repository]

An Orco dependent pathway suppresses egg-laying attraction to ripe fruit volatile compounds in Drosophila melanogaster but not in D. suzukii.

Journal: BMC ecology and evolution

Authors' code: sophie63/FlyLFM (BSD-2-Clause)

Status: code verified, 516 files readable, 1 match

[12240] doi:10.1186/s13073-025-01510-z [paper, repository]

Unsupervised feature extraction using deep learning empowers discovery of genetic determinants of the electrocardiogram.

Journal: Genome medicine

Authors' code: BIVectors/BRAVEHEART (GPL-3.0)

Status: code verified, 207 files readable, 3 matches

[12241] doi:10.1186/s40168-025-02196-6 [paper, data]

Alternate day fasting alleviates neuroinflammation in diabetic mice by regulating δ-valerobetaine-carnitine-microglia axis via enrichment of Akkermansia muciniphila.

Journal: Microbiome

Status: data only, 1 dataset cited

[12242] doi:10.1371/journal.pbio.3003192 [paper, data]

Seizure evolution in a mouse model of West syndrome involves complex and time-dependent synapse remodeling, gliosis and alterations in lipid metabolism.

Journal: PLoS biology

Status: data only, 1 dataset cited

[12243] doi:10.1371/journal.pcbi.1013569 [paper, repository]

Mouse and human striatal projection neurons compared - somatodendritic arbor, spines and in silico analyses.

Journal: PLoS computational biology

Authors' code: a1eko/humanspn (no license)

Status: code verified, 1,121 files readable, 3 matches

[12244] doi:10.1371/journal.pone.0329653 [paper, repository]

RISNet: A variable multi-modal image feature fusion adversarial neural network for generating specific dMRI images.

Journal: PloS one

Authors' code: opsliuhao/RIS (MIT)

Status: code verified, 65 files readable, 2 matches

[12245] doi:10.1371/journal.pone.0333592 [paper, repository]

Incorporating the thermodynamic effects of temperature and pressure on modeling neuronal gating kinetics.

Journal: PloS one

Authors' code: SantamariaLab (no license), modeldb:2019887 (no license)

Status: code verified

[12246] doi:10.2147/jir.s540483 [paper, repository]

Maresin 1 Alleviates Seizure Symptoms by Modulating the Crosstalk Between Inflammation and Ferroptosis.

Journal: Journal of inflammation research

Authors' code: PediatricLab-Jiangnan/Maresin1-and-Seizures (no license)

Status: code verified, 2 files readable, 3 matches

[12247] doi:10.3389/fmed.2025.1660445 [paper, data]

Application research on YOLOv5 model based on Lightweight Atrous Attention Module in brain tumor MRI image segmentation.

Journal: Frontiers in medicine

Status: data only, 2 datasets cited

[12248] doi:10.3389/fmed.2025.1690177 [paper, data]

Diagnosing autism spectrum disorder based on eye tracking technology using deep learning models.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[12249] doi:10.3389/fnagi.2025.1641214 [paper, repository]

Tortuous extracranial arteries contribute to white Matter hyperintensities in aging brains.

Journal: Frontiers in aging neuroscience

Authors' code: CompImg/LST-AI (MIT)

Status: code verified, 31 files readable, 2 matches

[12250] doi:10.3389/fnetp.2025.1674935 [paper, repository]

Computational analysis of two novel deep brain stimulation pulsing patterns on a thalamocortical network model of Parkinson's disease.

Journal: Frontiers in network physiology

Authors' code: aafarokh/TCM_DBS (no license)

Status: dead link

[12251] doi:10.3389/fnmol.2025.1609772 [paper, data]

Neuronal activity-dependent gene expression is stimulus-specific and changes with neuronal maturation.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[12252] doi:10.3390/bios15100680 [paper, repository]

Automatic Removal of Physiological Artifacts in OPM-MEG: A Framework of Channel Attention Mechanism Based on Magnetic Reference Signal.

Journal: Biosensors

Authors' code: lewin-liyong/CA-SeqNet (no license), abc196810/CA-SeqNet (no license)

Status: code verified, 16 files readable, 8 matches

[12253] doi:10.3390/genes16101174 [paper, data]

Bridging Genotype to Phenotype in <i>KMT5B</i>-Related Syndrome: Evidence from RNA-Seq, <sup>18</sup>FDG-PET, Clinical Deep Phenotyping in Two New Cases, and a Literature Review.

Journal: Genes

Status: data only, 1 dataset cited

Wednesday, 8 October 2025 (35 papers)

[12254] doi:10.1002/acn3.70217 [paper, repository]

Diffusion Tractography Biomarker for Epilepsy Severity in Children With Drug-Resistant Epilepsy.

Journal: Annals of clinical and translational neurology

Authors' code: wsutil/dilated-CNN-RN-GASE (no license)

Status: code verified, 2 files readable, 1 match

[12255] doi:10.1007/s10278-025-01692-3 [paper, repository]

Radiogenomics for Glioblastoma Survival Prediction: Integrating Radiomics, Clinical, and Genomic Features Using Artificial Intelligence.

Journal: Journal of imaging informatics in medicine

Authors' code: ReubenDo/MRIPreprocessor (Apache-2.0)

Status: code verified, 7 files readable, 2 matches

[12256] doi:10.1016/j.isci.2025.113733 [paper]

Subcortical neural basis of malevolent creativity.

Journal: iScience

Status: code on request

[12257] doi:10.1016/j.jbc.2025.110804 [paper, data]

Transmembrane domain interactions underlie NSG1 regulation of sortilin ectodomain shedding.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[12258] doi:10.1016/j.mcn.2025.104051 [paper]

AstroGreen transgenic mouse illuminates the trafficking of astrocyte-derived extracellular vesicles.

Journal: Molecular and cellular neurosciences

Status: code on request

[12259] doi:10.1038/s41467-025-62631-y [paper, data]

Exercise facilitates post-stroke recovery through mitigation of neuronal hyperexcitability via interleukin-10 signaling.

Journal: Nature communications

Status: data only, 1 dataset cited

[12260] doi:10.1038/s41467-025-63866-5 [paper, repository]

Neural coding of choice and outcome are modulated by uncertainty in orbitofrontal but not secondary motor cortex.

Journal: Nature communications

Authors' code: izquierdolab (no license)

Status: code verified

[12261] doi:10.1038/s41586-025-09602-x [paper, repository]

A parabrachial hub for need-state control of enduring pain.

Journal: Nature

Authors' code: KennedyNeuro/parabrachial-hub-2025 (MIT)

Status: code verified, 17 files readable, 2 matches

[12262] doi:10.1038/s41586-025-09604-9 [paper, repository]

Flexible perceptual encoding by discrete gamma events.

Journal: Nature

Authors' code: cortex-lab/phy (BSD-3-Clause), cardin-higley-lab/CBASS (Apache-2.0)

Status: code verified, 304 files readable, 11 matches

[12263] doi:10.1038/s42003-025-08843-w [paper, repository]

Associations between fMRI signal amplitude, hemispheric asymmetry, and task performance.

Journal: Communications biology

Authors' code: figshare 29967877 (CC-BY-4.0)

Status: code verified, 1 file readable

[12264] doi:10.1038/s42003-025-08847-6 [paper, repository]

Evaluating the temporal order of motor and auditory systems in speech production using intracranial EEG.

Journal: Communications biology

Authors' code: zc2214/Speech_sEEG (no license)

Status: code verified, 11 files readable, 4 matches

[12265] doi:10.1038/s44184-025-00158-2 [paper, repository]

Automated Alzheimer's disease detection using active learning model with reinforcement learning and scope loss function.

Journal: Npj mental health research

Authors' code: zhisenhe/alzheimer-disease-detection- (no license)

Status: empty repository

[12266] doi:10.1073/pnas.2426241122 [paper, data]

Transpupillary in vivo two-photon imaging reveals enhanced surveillance of retinal microglia in diabetic mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[12267] doi:10.1073/pnas.2510579122 [paper, repository]

A multilayered gap junction network is essential for social decision-making.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ShunjiNakano (no license), ShunjiNakano/AIY_tracking (no license), ShunjiNakano/bootstraps_low_density_assay (no license)

Status: code verified, 4 files readable

[12268] doi:10.1091/mbc.e24-12-0539 [paper]

Patient-derived induced pluripotent stem cells with a C9orf72 expansion as a model to study frontotemporal dementia pathologies.

Journal: Molecular biology of the cell

Status: data only

[12269] doi:10.1098/rsos.242062 [paper, repository]

An open-source neurodynamic model of the lower urinary tract.

Journal: Royal Society open science

Authors' code: Zenodo 16961553 (MIT), MoveR-Digital-Health-and-Care-Hub/lower-urinary-tract-sim (MIT), doi:10.6084/m9.figshare.c.8057289 (no license)

Status: code verified, 14 files readable, 13 matches

[12270] doi:10.1098/rsos.251343 [paper, repository]

The neuro-immune crosstalk between periphery and central nervous system during acute immune response to virus-mimicking RNA in parrots.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.8039807 (no license)

Status: code found, still to be checked

[12271] doi:10.1101/2025.10.03.25337171 [paper, repository]

Transdiagnostic quantitative assessment of dementias using in vivo MRI and data-driven disease progression modelling: a case study in Alzheimer’s disease and dementia with Lewy bodies

Journal: medRxiv (preprint)

Authors' code: ucl-pond/pySuStaIn (MIT)

Status: code verified, 19 files readable, 2 matches

[12272] doi:10.1101/2025.10.07.25337510 [paper, repository]

Neurocomputational evidence of sustained Self-Other mergence after psychedelics

Journal: medRxiv (preprint)

Authors' code: PabloMallaroni/project_efc_afterglow (no license)

Status: code verified, 19 files readable, 15 matches

[12273] doi:10.1136/gutjnl-2025-335353 [paper, data]

Microbiota fasting-related changes ameliorate cognitive decline in obesity and boost ex vivo microglial function through the gut-brain axis.

Journal: Gut

Status: data only, 1 dataset cited

[12274] doi:10.1162/imag.a.916 [paper, repository]

Repeatability and reproducibility of rapid T<sub>1</sub> mapping of brain tissues at 64 mT: A multicentre study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: UNITY-Physics/unity_t1mapping_paper (no license)

Status: code verified, 4 files readable, 3 matches

[12275] doi:10.1186/s12935-025-03958-w [paper, data]

Mitochondrial electron transport chain gene-based prognostic model identifies SDHB as a key regulator of low-grade glioma progression and therapeutic target.

Journal: Cancer cell international

Status: data only, 1 dataset cited

[12276] doi:10.1186/s12964-025-02420-8 [paper, data]

BMAL1 modulation alleviates inflammatory responses in monocytes by targeting the Fis1-mediated mitochondrial unfolded protein response in high-altitude hypoxia.

Journal: Cell communication and signaling : CCS

Status: data only, 1 dataset cited

[12277] doi:10.1186/s12974-025-03543-y [paper, repository]

T cell-mediated SIV dissemination into the CNS: a single-cell transcriptomic analysis.

Journal: Journal of neuroinflammation

Authors' code: Howard-Fox-Lab/Brain_lymphocytes_acute_SIV_infection (no license), Howard-Fox-Lab/Brain (no license)

Status: code verified, 17 files readable, 24 matches

[12278] doi:10.1371/journal.pone.0324580 [paper, data]

The role of Methyl-CpG binding domain 3 (Mbd3) protein in epileptogenesis.

Journal: PloS one

Status: data only, 1 dataset cited

[12279] doi:10.1523/eneuro.0026-25.2025 [paper, repository]

Differential Encoding of Odor and Place in the Mouse Piriform and Entorhinal Cortex.

Journal: eNeuro

Authors' code: fleischmann-lab/papers/odor-coding-analysis (no license)

Status: code verified, 69 files readable, 7 matches

[12280] doi:10.1523/eneuro.0155-25.2025 [paper, repository]

Online HD-tRNS Over the Right Temporoparietal Junction Modulates Social Inference But Not Motor Coordination.

Journal: eNeuro

Authors' code: ppsp-team/moreau2025 (no license)

Status: dead link

[12281] doi:10.1523/jneurosci.0133-25.2025 [paper, repository]

Cholinergic Dynamics in the Septo-hippocampal System Provide Phasic Multiplexed Signals for Spatial Novelty and Correlate with Behavioral States.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: dannenberglab/Cholinergic-dynamics-in-spatial-exploration (no license)

Status: code verified, 6 files readable, 4 matches

[12282] doi:10.3389/fgene.2025.1600883 [paper, data]

Pain - related methylation driver genes affect the prognosis of pancreatic cancer patients by altering immune function and perineural infiltration.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[12283] doi:10.3389/fimmu.2025.1680667 [paper, data]

Ribosome biogenesis-related gene signature predicts prognosis and immune landscape in glioma and identifies UTP20 as a therapeutic target.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[12284] doi:10.3389/fnagi.2025.1557397 [paper, repository]

<i>In vivo</i> quantification of superficial cortical veins on susceptibility-weighted imaging with artificial intelligence image segmentation and the potential mechanism of human cognitive decline.

Journal: Frontiers in aging neuroscience

Authors' code: wkentaro/labelme (GPL-3.0)

Status: code verified, 211 files readable

[12285] doi:10.3389/fnins.2025.1634606 [paper, data]

LEM-UNet: an edge-guided network for 3D multimodal images segmentation in focal cortical dysplasia.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[12286] doi:10.3389/fphar.2025.1650296 [paper, data]

Multi-omics analysis reveals Angelica dahurica radix extract alleviates migraine in rats via gut microbiota-metabolome-gut-brain axis regulation.

Journal: Frontiers in pharmacology

Status: data only, 2 datasets cited

[12287] doi:10.3390/ijms26199804 [paper, data]

Preexisting Genetic Background Primes the Responses of Human Neurons to Amyloid β.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[12288] doi:10.7554/elife.101992 [paper, data]

Bayesian meta-analysis reveals the mechanistic role of slow oscillation-spindle coupling in sleep-dependent memory consolidation.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 7 October 2025 (41 papers, 32 on this page)

[12289] doi:10.1007/s00018-025-05860-0 [paper, repository]

Splicing factor Sf3b1 facilitates maintenance of neuronal dendrites by modulating mitochondrial health.

Journal: Cellular and molecular life sciences : CMLS

Authors' code: skibbe/determ (no license), eggerbo/Drosophila_brain (no license)

Status: code verified, 8 files readable

[12290] doi:10.1007/s00109-025-02592-3 [paper, data]

SUV39H1 regulates progression of pediatric diffuse high-grade gliomas through modulation of β-catenin/TCF4 levels.

Journal: Journal of molecular medicine (Berlin, Germany)

Status: data only, 1 dataset cited

[12291] doi:10.1007/s00259-025-07576-6 [paper]

Revealing the hidden: A systematic review and meta-analysis of FAPI-based tracers imaging for brain metastatic lesions.

Journal: European journal of nuclear medicine and molecular imaging

Status: code on request

[12292] doi:10.1007/s11357-025-01928-8 [paper, data]

Age differences in what-if thinking from midlife onwards: Prefrontal contribution and implications for emotional health in late life.

Journal: GeroScience

Status: data only, 1 dataset cited

[12293] doi:10.1016/j.omtn.2025.102732 [paper, data]

Pan-cancer neural regulation pattern with implications for patient stratification and immunotherapy.

Journal: Molecular therapy. Nucleic acids

Status: data only, 1 dataset cited

[12294] doi:10.1017/s0033291725101773 [paper]

The relationship between recreational cannabis use, psychotic-like experiences, and the salience network in adolescent and young adult twins.

Journal: Psychological medicine

Status: code on request

[12295] doi:10.1038/s41380-025-03294-5 [paper, repository]

Genome-wide meta-analyses of cross substance use disorders in diverse populations.

Journal: Molecular psychiatry

Authors' code: genome.jp/kegg/drug (no license)

Status: code verified

[12296] doi:10.1038/s41467-025-63916-y [paper, repository]

Fast hierarchical processing of orthographic and semantic parafoveal information during natural reading.

Journal: Nature communications

Authors' code: OSF rnx89 (no license)

Status: code verified, 5 files readable, 2 matches

[12297] doi:10.1038/s41467-025-63952-8 [paper, data]

Fate mapping of peripherally-derived macrophages after traumatic brain injury in mice reveals a long-lasting population with a distinct transcriptomic signature.

Journal: Nature communications

Status: data only, 2 datasets cited

[12298] doi:10.1038/s41467-025-64259-4 [paper, repository]

Data-driven fine-grained region discovery in the mouse brain with transformers.

Journal: Nature communications

Authors' code: abbasilab/celltransformer (CC-BY-NC-SA-4.0)

Status: code verified, 29 files readable, 8 matches

[12299] doi:10.1038/s41531-025-01161-2 [paper]

Subjective cognitive decline in individuals with isolated REM sleep behavior disorder.

Journal: NPJ Parkinson's disease

Status: code on request

[12300] doi:10.1038/s41598-025-17048-4 [paper, repository]

MRI mapping of hemodynamics in the human spinal cord.

Journal: Scientific reports

Authors' code: BrightLab-ANVIL/SCVR (MIT)

Status: code verified, 7 files readable

[12301] doi:10.1038/s41598-025-18758-5 [paper, data]

Anston attentional network for structured data based stroke risk prediction in smart aging.

Journal: Scientific reports

Status: data only, 4 datasets cited

[12302] doi:10.1038/s41598-025-18776-3 [paper, repository]

Cholinergic modulation enables scalable action selection learning in a computational model of the striatum.

Journal: Scientific reports

Authors' code: EduardoRosLab/STR_DA_ACh (GPL-3.0)

Status: code verified, 352 files readable, 3 matches

[12303] doi:10.1038/s41598-025-18879-x [paper, data]

Deep intelligence: a four-stage deep network for accurate brain tumor segmentation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12304] doi:10.1038/s41598-025-21407-6 [paper, data]

Multi-modal deep learning framework for early detection of Parkinson's disease using neurological and physiological data for high-fidelity diagnosis.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[12305] doi:10.1038/s41598-025-21460-1 [paper, repository]

Incremental self-organization of spatio-temporal spike pattern detection.

Journal: Scientific reports

Authors' code: MohammadDehghaniH/Incremental_Self-Organization_of_Spatio-Temporal_Spike_Pattern_Detection (MIT)

Status: code verified, 13 files readable, 3 matches

[12306] doi:10.1038/s42003-025-08727-z [paper, repository]

OncoMark: a high-throughput neural multi-task learning framework for comprehensive cancer hallmark quantification.

Journal: Communications biology

Authors' code: doi:10.5061/dryad.zw3r228jc (no license), SML-CompBio/OncoMark (Apache-2.0)

Status: code verified, 24 files readable, 6 matches

[12307] doi:10.1073/pnas.2412687122 [paper, data]

Nanomedicines targeting protease-activated receptor 2 in endosomes provide sustained analgesia.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[12308] doi:10.1073/pnas.2422878122 [paper, data]

The locus coeruleus maintains core body temperature and protects against hypothermia during dexmedetomidine-induced sedation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[12309] doi:10.1073/pnas.2504164122 [paper, repository]

Biologically grounded neocortex computational primitives implemented on neuromorphic hardware improve vision transformer performance.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Tibbling-Technologies (no license), drive.google.com/drive/folders (no license)

Status: code verified

[12310] doi:10.1073/pnas.2508439122 [paper, repository]

When noncanonical olfaction is optimal.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: lienkaemper/mosquito_MI (no license)

Status: code verified, 26 files readable, 7 matches

[12311] doi:10.1073/pnas.2509626122 [paper, repository]

Human deep sleep facilitates cerebrospinal fluid dynamics linked to spontaneous brain oscillations and neural events.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 16756614 (CC-BY-NC-ND-4.0)

Status: code verified, 12 files readable, 1 match

[12312] doi:10.1080/19420889.2025.2568307 [paper, repository]

Identification of brain-like complex information architectures in embryonic tissue of <i>Xenopus laevis</i> organoids.

Journal: Communicative & integrative biology

Authors' code: caitlingrasso/calcium-signal-extraction (no license)

Status: code verified, 2 files readable

[12313] doi:10.1093/pnasnexus/pgaf321 [paper, repository]

Functional MRI detection of blood-oxygenation-level-dependent responses in both white and gray matter of the spinal cord after optogenetic cortical stimulation.

Journal: PNAS nexus

Authors' code: arimishra/repositoryPNAS (no license)

Status: code verified, 4 files readable

[12314] doi:10.1101/2025.10.04.680449 [paper, data]

Return of the GEDAI: Unsupervised EEG Denoising based on Leadfield Filtering

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[12315] doi:10.1117/1.nph.12.4.045003 [paper, repository]

Anisotropic light propagation in human brain white matter.

Journal: Neurophotonics

Authors' code: lens-biophotonics/Foa3D (MIT), xopto/pyxopto (GPL-3.0)

Status: code verified, 433 files readable, 7 matches

[12316] doi:10.1186/s12920-025-02218-0 [paper, data]

Overexpression of CCK Neuropeptide in brain is linked to ZBTB20 mutations: potential diagnostic relevance in glioblastoma.

Journal: BMC medical genomics

Status: data only, 1 dataset cited

[12317] doi:10.1186/s13046-025-03455-y [paper, data]

Co-detection of mutations and methylations in cerebrospinal fluid ctdna for minimally-invasive diagnosis of brainstem glioma.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 1 dataset cited

[12318] doi:10.1186/s13059-025-03808-y [paper, repository]

A ternary-code DNA methylome atlas of mouse tissues.

Journal: Genome biology

Authors' code: varamos/DNAm_Atlas (MIT), Zenodo 17109847 (CC-BY-4.0)

Status: code verified, 6 files readable, 2 matches

[12319] doi:10.1371/journal.pbio.3003399 [paper, repository]

Identification of five sleep-biopsychosocial profiles with specific neural signatures linking sleep variability with health, cognition, and lifestyle factors.

Journal: PLoS biology

Authors' code: thomasyeolab/cbig (MIT), valkebets/sleep_biopsychosocial_profiles (Apache-2.0), Zenodo 16624810 (Apache-2.0)

Status: code verified, 2,006 files readable, 6 matches

[12320] doi:10.1371/journal.pone.0332310 [paper, repository]

Exploring neural entrainment and synchrony in response to repeated 60 Hz flickering white light in healthy volunteers.

Journal: PloS one

Authors' code: AminAlam/HVS (no license), Zenodo 17019688 (CC-BY-4.0)

Status: code verified, 29 files readable, 5 matches

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