Every paper, by date: page 56

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 56 of 200: 7 October 2025 to 1 October 2025.

Tuesday, 7 October 2025 (41 papers, 9 on this page)

[12321] doi:10.3389/fnbeh.2025.1643449 [paper, data]

Top-down instruction outweighs emotional salience: nocturnal sleep physiology indicates selective memory consolidation.

Journal: Frontiers in behavioral neuroscience

Status: data only, 1 dataset cited

[12322] doi:10.3389/fnhum.2025.1668367 [paper, repository]

Sensorimotor perturbation-induced cortical responses by a novel PES system: analysis of the N1 component in healthy adults and Parkinson's disease.

Journal: Frontiers in human neuroscience

Authors' code: isd-iin-els/Neurodevices (no license)

Status: code verified, 39 files readable

[12323] doi:10.3390/brainsci15101083 [paper, data]

Region-Specific Long-Term Transcriptional Changes in the Plasminogen Activation System and Neuroinflammation in the Rat Brain After Status Epilepticus: Association with Depressive-like Behavior.

Journal: Brain sciences

Status: data only, 1 dataset cited

[12324] doi:10.3390/ijms26199772 [paper, data]

Transcriptomic-Driven Drug Repurposing Reveals SP600125 as a Promising Drug Candidate for the Treatment of Glial-Mesenchymal Transition in Glioblastoma.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[12325] doi:10.3390/neurosci6040101 [paper, repository]

Mitigating Head Position Bias in Perivascular Fluid Imaging: LD-ALPS, a Novel Method for DTI-ALPS Calculation.

Journal: NeuroSci

Authors' code: fordburles.com/ld-alps.html (no license)

Status: code verified

[12326] doi:10.34133/cbsystems.0379 [paper, repository]

Augmenting Electroencephalogram Transformer for Steady-State Visually Evoked Potential-Based Brain-Computer Interfaces.

Journal: Cyborg and bionic systems (Washington, D.C.)

Authors' code: TBC-TJU/MetaBCI (GPL-2.0), ccc65535/AETF (no license)

Status: code verified, 151 files readable, 12 matches

[12327] doi:10.3892/br.2025.2067 [paper, repository]

Association of Waardenburg syndrome with a new mutation in the <i>PAX3</i> gene: A case report and literature review.

Journal: Biomedical reports

Authors' code: cnvkit.readthedocs.io (no license)

Status: code verified

[12328] doi:10.7554/elife.106217 [paper, repository]

A unified rodent atlas reveals the cellular complexity and evolutionary divergence of the dorsal vagal complex.

Journal: eLife

Authors' code: LabSabatini/DVC_cell_atlas (no license), colab.research.google.com/drive/1v983gcqxiwbn-4lgx18jxpwezokqmbwx (no license), colab.research.google.com/drive/10tamfrosmscubak6whx80tgdebshewqb (no license)

Status: code verified, 6 files readable, 8 matches

[12329] doi:10.7554/elife.97270 [paper, repository]

Distributed subthreshold representation of sharp wave-ripples by hilar mossy cells.

Journal: eLife

Authors' code: ohchako/DistributedSubthresholdRepresentationOfSharpWaveRipplesByHilarMossyCells (MIT)

Status: code verified, 24 files readable, 6 matches

Monday, 6 October 2025 (30 papers)

[12330] doi:10.1002/lpor.202501980 [paper, repository]

Widefield Targeted Illumination Microscopy Enables Optically-Sectioned, Motion-Resilient Imaging of Neuronal Fibers and Their Dynamics.

Journal: Laser & photonics reviews

Authors' code: wormneurolab/Targeted-Illumination-Microscopy (no license)

Status: code verified, 15 files readable, 4 matches

[12331] doi:10.1007/s12672-025-03559-z [paper, data]

Malignant progression of MES-like cells mediated by COL22A1 in the spatial heterogeneity of glioblastoma.

Journal: Discover oncology

Status: data only, 1 dataset cited

[12332] doi:10.1016/j.neuroimage.2025.121508 [paper, repository]

Functional transition rate of the default mode network is associated with self-reported resilience.

Journal: NeuroImage

Authors' code: figshare 27998954 (CC-BY-4.0)

Status: code verified, 1 file readable

[12333] doi:10.1038/s41380-025-03300-w [paper, data]

Regulation of stress susceptibility by chromatin-binding protein PHF6 in the pituitary intermediate lobe.

Journal: Molecular psychiatry

Status: data only, 2 datasets cited

[12334] doi:10.1038/s41398-025-03537-7 [paper, data]

Restoration of NEXMIF expression rescues abnormalities in gene transcription, neuron maturation and autistic-like behaviors in Nexmif knockout mice.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[12335] doi:10.1038/s41398-025-03584-0 [paper, repository]

Reconfiguration of functional brain hierarchy in schizophrenia.

Journal: Translational psychiatry

Authors' code: EducationalTestingService/factor_analyzer (GPL-2.0), Irenacero/FDT_schizophrenia (no license)

Status: code verified, 19 files readable

[12336] doi:10.1038/s41398-025-03585-z [paper, repository]

Shared neuroimaging and molecular profiles in type 2 diabetes mellitus and major depressive disorder: an integrative analysis of genetic, transcriptomic, and neuroimaging data.

Journal: Translational psychiatry

Authors' code: rmarkello/abagen (BSD-3-Clause), precimed/pleiofdr (GPL-3.0), hakyimlab/MetaXcan (MIT)

Status: code verified, 229 files readable, 5 matches

[12337] doi:10.1038/s41398-025-03633-8 [paper, data]

Integrating genetic regulation and schizophrenia-specific splicing quantitative expression with GWAS prioritizes novel risk genes for schizophrenia.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[12338] doi:10.1038/s41420-025-02747-8 [paper, repository]

Plin4 modulates lipid droplet accumulation and ferroptosis in neurons exposed to benzo[a]pyrene.

Journal: Cell death discovery

Authors' code: Sun0shy/BPDE_Ferroptosis (no license)

Status: code verified, 20 files readable, 2 matches

[12339] doi:10.1038/s41467-025-63917-x [paper, repository]

Learning plasma dynamics and robust rampdown trajectories with predict-first experiments at TCV.

Journal: Nature communications

Authors' code: Zenodo 16621120 (CC-BY-4.0)

Status: code verified

[12340] doi:10.1038/s41467-025-63953-7 [paper, repository]

Paraventricular nucleus CRH neurons regulate acute lung injury via sympathetic nerve-neutrophil axis.

Journal: Nature communications

Authors' code: taoge98/scRNA-seq-code (no license), Zenodo 16631175 (CC-BY-4.0)

Status: code verified

[12341] doi:10.1038/s41467-025-63961-7 [paper, repository]

The impact of musical expertise on disentangled and contextual neural encoding of music revealed by generative music models.

Journal: Nature communications

Authors' code: naplab/Music-Transformer-Representations (no license)

Status: code verified, 2 files readable

[12342] doi:10.1038/s41467-025-63962-6 [paper, repository]

Mesoscale functional organization of face and body areas in the macaque brain.

Journal: Nature communications

Authors' code: lzgitlab/share/mfus_of_face_body (no license)

Status: code verified, 30 files readable, 4 matches

[12343] doi:10.1038/s41467-025-64234-z [paper, repository]

Predictive Coding Light.

Journal: Nature communications

Authors' code: neuromorphicsystems/IEBCS (GPL-3.0), comsee-research/Predictive-Coding-Light (no license)

Status: code verified, 73 files readable, 6 matches

[12344] doi:10.1038/s41598-025-18807-z [paper, data]

An integrated transcriptomic approach for identifying enhancers in limb motor pools.

Journal: Scientific reports

Status: code on request, 3 datasets cited

[12345] doi:10.1038/s41698-025-01078-2 [paper, data]

Natural history of SPP1 signaling in NF1 tumors.

Journal: NPJ precision oncology

Status: code on request, 1 dataset cited

[12346] doi:10.1038/s42003-025-08786-2 [paper, repository]

Novel regulators of heparan sulfate proteoglycans modulate cellular uptake of α-synuclein fibrils.

Journal: Communications biology

Authors' code: Zenodo 3738340 (CC-BY-4.0)

Status: empty repository

[12347] doi:10.1038/s43856-025-01121-0 [paper, repository]

Integrating direct electrical stimulation with brain connectivity predicts lesion-induced language impairment and recovery.

Journal: Communications medicine

Authors' code: Zenodo 16418628 (CC-BY-4.0), FBK-NILab/intraopmap (MIT), FBK-NILab/White-Matter-DES-Brain-Maps (CC0-1.0)

Status: code verified, 88 files readable, 11 matches

[12348] doi:10.1038/s44161-025-00728-9 [paper, repository]

Correlative imaging integrates electrophysiology with three-dimensional murine heart reconstruction to reveal electrical coupling between cell types.

Journal: Nature cardiovascular research

Authors' code: aneic/meshtool (GPL-3.0), sciinstitute/seg3d (no license), francescogiardini/heart (CC0-1.0)

Status: code verified, 1,389 files readable, 2 matches

[12349] doi:10.1080/0886022x.2025.2560036 [paper, data]

Retrospective analysis of serum NELL-1 and EXT1/2: no significant predictive value for treatment response in a cohort of membranous nephropathy patients.

Journal: Renal failure

Status: data only, 1 dataset cited

[12350] doi:10.1088/1741-2552/ae0965 [paper, repository]

Real-time detection of spoken speech from unlabeled ECoG signals: a pilot study with an ALS participant.

Journal: Journal of neural engineering

Authors' code: cronelab/corticom-neural-vad (MIT), ezmsg-org/ezmsg (MIT)

Status: code verified, 180 files readable, 16 matches

[12351] doi:10.1093/braincomms/fcaf381 [paper, repository]

Machine learning integration of MRI and gait reveals mobility phenotypes in multiple sclerosis.

Journal: Brain communications

Authors' code: stefanieZhao77/Cluster-Mate (MIT)

Status: code verified, 14 files readable, 4 matches

[12352] doi:10.1186/s12967-025-07032-x [paper, data]

ATP5F1A deficiency causes developmental delay and motor dysfunction in humans and zebrafish.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[12353] doi:10.1186/s40478-025-02123-8 [paper]

Dendritic beading during early brain development impairs signal transmission and synaptic plasticity.

Journal: Acta neuropathologica communications

Status: code on request

[12354] doi:10.1371/journal.pbio.3003407 [paper, repository]

The auditory brainstem response to natural speech is not affected by selective attention.

Journal: PLoS biology

Authors' code: Zenodo 592546 (BSD-3-Clause), labsn/expyfun (BSD-3-Clause)

Status: code verified, 147 files readable, 1 match

[12355] doi:10.1371/journal.pcbi.1013514 [paper, repository]

Understanding the high-order network plasticity mechanisms of ultrasound neuromodulation.

Journal: PLoS computational biology

Authors' code: carlosmig/StarCraft-2-Modeling (no license), nplresearch/Modelling-TUS (no license)

Status: code verified, 10 files readable, 3 matches

[12356] doi:10.2147/jir.s531241 [paper]

Downregulation of Gbp2 Attenuates LPS-Induced Inflammation in BV2 Microglia Cells Through Inhibition of STAT1.

Journal: Journal of inflammation research

Status: data only

[12357] doi:10.3389/fmicb.2025.1649738 [paper, data]

Time-course transcriptomics reveals the impact of <i>Treponema pallidum</i> on microvascular endothelial cell function and phenotype.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[12358] doi:10.3389/fncir.2025.1634298 [paper, repository]

Hippocampal phase precession may be generated by chimera dynamics.

Journal: Frontiers in neural circuits

Authors' code: mariamasoliver/link-phase-precession-and-chimeras (no license)

Status: code verified, 20 files readable, 3 matches

[12359] doi:10.7717/peerj.20143 [paper, data]

Bioinformatic analysis and experimental validation of hub autophagy-related genes as novel biomarkers for type 2 diabetes mellitus and Alzheimer's disease.

Journal: PeerJ

Status: data only, 1 dataset cited

Sunday, 5 October 2025 (1 paper)

[12360] doi:10.1111/acel.70255 [paper]

Canagliflozin Reprograms the Aging Hippocampus in Genetically Diverse UM-HET3 Mice and Attenuates Alzheimer's-Like Pathology.

Journal: Aging cell

Status: data only

Saturday, 4 October 2025 (7 papers)

[12361] doi:10.1016/j.isci.2025.113693 [paper]

Meningeal lymphatic architecture and drainage dynamics surrounding the human middle meningeal artery.

Journal: iScience

Status: code on request

[12362] doi:10.1016/j.isci.2025.113697 [paper]

Golgi-mediated microtubule nucleation is associated with initiation of vertebrate peripheral neuron regeneration.

Journal: iScience

Status: code on request

[12363] doi:10.1016/j.isci.2025.113699 [paper, repository]

Bimodal nonlinear dendrites in PV+ basket cells drive distinct memory-related oscillations.

Journal: iScience

Authors' code: AlexandraTzilivaki/Tzilivakietal2024 (no license)

Status: empty repository, 1 file readable

[12364] doi:10.1016/j.isci.2025.113707 [paper, repository]

Vision drives the neural construction of a two-stage hierarchy of spatial processing in infancy.

Journal: iScience

Authors' code: sccn.ucsd.edu/eeglab/index.php (no license), r-project.org (no license)

Status: code verified

[12365] doi:10.1016/j.neuroimage.2025.121507 [paper]

Neural signatures and personalized neuromodulation in a subject experiencing context-dependent inhibitory control deficits.

Journal: NeuroImage

Status: code on request

[12366] doi:10.3390/ijms26199684 [paper, data]

Glia Cells Are Selectively Sensitive to Nanosized Titanium Dioxide Mineral Forms.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[12367] doi:10.3390/s25196147 [paper, data]

NeoNet: A Novel Deep Learning Model for Retinal Disease Diagnosis and Localization.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 3 October 2025 (39 papers)

[12368] doi:10.1002/jmri.70128 [paper, repository]

The Sense of Smell (SoS) Atlas: Its Creation and First Application to Investigate COVID-19 Related Anosmia With a Comprehensive Quantitative MRI Protocol.

Journal: Journal of magnetic resonance imaging : JMRI

Authors' code: BBillot/hypothalamus_seg (Apache-2.0), fragrussu/MyRelax (BSD-2-Clause)

Status: code verified, 55 files readable, 5 matches

[12369] doi:10.1002/mds.70076 [paper, repository]

Prediction of Pathological Subthalamic Nucleus Beta Burst Occurrence in Parkinson's Disease.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: b-abdi/burst-prediction (no license)

Status: code verified, 1 file readable, 3 matches

[12370] doi:10.1002/mrm.70113 [paper, repository]

Cartesian MaxGIRF: Model-based EPI reconstruction incorporating gradient nonlinearity and concomitant field effects.

Journal: Magnetic resonance in medicine

Authors' code: usc-mrel/cartesian_maxgirf_epi_2d (no license), usc-mrel/cartesian_maxgirf_epi_3d (no license)

Status: code verified, 618 files readable, 13 matches

[12371] doi:10.1007/s11307-025-02037-w [paper]

Metabolic Shift Mirrors GBM Immunity to Anti-PD-L1 Immunotherapy: A Deuterium MRS Study.

Journal: Molecular imaging and biology

Status: code on request

[12372] doi:10.1016/j.cnp.2025.08.001 [paper, repository]

Evaluating pediatric peripheral neuromuscular disorders using deep neural networks on electrodiagnostic data.

Journal: Clinical neurophysiology practice

Authors' code: gercoo/DNN_EDX (no license)

Status: code verified, 1 file readable, 5 matches

[12373] doi:10.1016/j.dcn.2025.101624 [paper, repository]

Brain functional connectivity, but not neuroanatomy, captures the interrelationship between sex and gender in preadolescents.

Journal: Developmental cognitive neuroscience

Authors' code: ABCD-STUDY/nda-abcd-collection-3165 (BSD-3-Clause), Zenodo 10779163 (CC-BY-4.0), nasiametoki/brain_sex_gender (no license), elvisha/sg_predictions (MIT)

Status: code verified, 22 files readable, 3 matches

[12374] doi:10.1016/j.isci.2025.113682 [paper, data]

Anthrax ET activates Rac1 and RTK signaling to induce F-actin reorganization and endothelial permeability.

Journal: iScience

Status: code on request, 2 datasets cited

[12375] doi:10.1016/j.media.2025.103821 [paper, repository]

Unsupervised multimodal surface registration with geometric deep learning.

Journal: Medical image analysis

Authors' code: ThomasYeoLab/CBIG (MIT), ecr05/MSM_HOCR (no license)

Status: code verified, 2,047 files readable, 5 matches

[12376] doi:10.1017/s0033291725101992 [paper, repository]

Network localization of genetic risk for schizophrenia and bipolar disorder.

Journal: Psychological medicine

Authors' code: mfmaplestory/FCNM (no license)

Status: code verified, 5 files readable, 2 matches

[12377] doi:10.1038/s41467-025-63229-0 [paper, repository]

Spatial coding dysfunction and network instability in the aging medial entorhinal cortex.

Journal: Nature communications

Authors' code: ahwillia/lvl (no license), Zenodo 15851471 (CC-BY-4.0), giocomolab/herber2024 (no license)

Status: code verified, 77 files readable, 6 matches

[12378] doi:10.1038/s41467-025-63633-6 [paper, repository]

The intrinsic time tracker: temporal context is embedded in entorhinal and hippocampal functional connectivity patterns.

Journal: Nature communications

Authors' code: LEAPNeuroLab/rsFCTemporalDrift (no license), Zenodo 16579438 (CC-BY-4.0)

Status: code verified, 14 files readable, 3 matches

[12379] doi:10.1038/s41467-025-63867-4 [paper, repository]

All-optical voltage interrogation for probing synaptic plasticity in vivo.

Journal: Nature communications

Authors' code: Zenodo 16955138 (CC-BY-4.0), Zenodo 16955331 (CC-BY-4.0), Zenodo 5509776 (other-open), m-beau/neuropyxels (GPL-3.0)

Status: code verified, 78 files readable, 5 matches

[12380] doi:10.1038/s41467-025-64173-9 [paper, repository]

Creative experiences and brain clocks.

Journal: Nature communications

Authors' code: ggtracker/sc2reader (MIT), amueller/word_cloud (MIT), carlosmig/Creativity_Brain_Clocks (no license), Zenodo 15915311 (CC-BY-4.0), fiuneuro/brainconn (GPL-3.0), adrianponce/Linear-Hopf-model (no license)

Status: code verified, 139 files readable, 9 matches

[12381] doi:10.1038/s41467-025-64443-6 [paper, data]

Anle138b binds predominantly to the central cavity in lipidic Aβ₄₀ fibrils and modulates fibril formation.

Journal: Nature communications

Status: data only, 1 dataset cited

[12382] doi:10.1038/s41467-025-64592-8 [paper, repository]

Stage-dependent cerebrocerebellar communication during sensorimotor processing.

Journal: Nature communications

Authors' code: elifesciences-publications/BWTT_PP (MIT), c7859/neurocomputing-lab/whisker/whiskeras-2.0 (GPL-3.0), modeldb:2019877 (no license)

Status: code verified, 1,869 files readable, 4 matches

[12383] doi:10.1038/s41522-025-00820-9 [paper, repository]

In vitro assessment of bacterial supernatants on hypothalamic gene expression: implications for appetite regulation.

Journal: NPJ biofilms and microbiomes

Authors' code: benjamin-valderrama/cuesta2025_probiotic_appetite (no license)

Status: code verified, 2 files readable, 4 matches

[12384] doi:10.1038/s41593-025-02062-6 [paper, data]

Muscle-derived miR-126 regulates TDP-43 axonal local synthesis and NMJ integrity in ALS models.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[12385] doi:10.1038/s41593-025-02064-4 [paper, repository]

Brain tumors induce widespread disruption of calvarial bone and alteration of skull marrow immune landscape.

Journal: Nature neuroscience

Authors' code: behnanNN/Behnan-NN-SM (no license), njkillian/LSM_NN (no license)

Status: code verified, 20 files readable, 15 matches

[12386] doi:10.1038/s41598-025-17635-5 [paper, data]

A deep learning-enriched framework for analyzing brain functional connectivity.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12387] doi:10.1038/s41598-025-17922-1 [paper, repository]

Hierarchical attention enhanced deep learning achieves high precision motor imagery classification in brain computer interfaces.

Journal: Scientific reports

Authors' code: Laboratory-EverythingAI/-EEG_Classification (no license)

Status: code verified, 11 files readable

[12388] doi:10.1038/s41598-025-18073-z [paper, repository]

Estimation of reference curves for brain atrophy and analysis of robustness to machine effects.

Journal: Scientific reports

Authors' code: geodaisics1/Estimation_of_reference_curves_for_brain_atrophy_and_analysis_of_robustness_to_machine_effects (no license)

Status: empty repository, 1 file readable

[12389] doi:10.1038/s43587-025-00962-7 [paper, repository]

Genome-wide analysis of brain age identifies 59 associated loci and unveils relationships with mental and physical health.

Journal: Nature aging

Authors' code: pjawinski/ukb_brainage (GPL-3.0), Zenodo 14826943 (CC-BY-4.0)

Status: code verified, 187 files readable, 40 matches

[12390] doi:10.1073/pnas.2512294122 [paper, repository]

Overcoming the space clamp effect: Reliable recovery of local and effective synaptic conductances of neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: vivian-wang-maker/conductance-measurement (no license)

Status: code verified, 58 files readable, 1 match

[12391] doi:10.1080/15476286.2025.2563986 [paper, data]

Altering rRNA 2'O-methylation pattern during neuronal differentiation is regulated by FMRP.

Journal: RNA biology

Status: data only, 1 dataset cited

[12392] doi:10.1080/21505594.2025.2564281 [paper, repository]

Stem cell-derived brain-like endothelial cells to interrogate <i>Streptococcus pneumoniae</i> interaction with brain endothelium.

Journal: Virulence

Authors' code: StrokaLab (no license)

Status: code verified

[12393] doi:10.1111/epi.18658 [paper, repository]

Hippocampal abnormality and response to vagus nerve stimulation in epilepsy.

Journal: Epilepsia

Authors' code: cnnp-lab/mahal-vns (no license)

Status: empty repository, 1 file readable

[12394] doi:10.1126/sciadv.ads4994 [paper, repository]

Attentional switching in larval zebrafish.

Journal: Science advances

Authors' code: Zenodo 14550074 (CC-BY-4.0), Kumaresh-Krishnan/attentional_switching (no license)

Status: code verified, 34 files readable, 4 matches

[12395] doi:10.1126/sciadv.adv2647 [paper, data]

Padlock-designed MOFs triggers an "avalanche effect" to enhance apoptosis and suppress metastasis in central nervous system lymphoma.

Journal: Science advances

Status: data only, 2 datasets cited

[12396] doi:10.1162/imag.a.159 [paper, repository]

Mapping hand function with simultaneous brain-spinal cord functional MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: NeuromuscularInsightLab/Oliva_Mapping_Hand_Functon_Imaging_Neuroscience_2025 (MIT)

Status: code verified, 34 files readable, 8 matches

[12397] doi:10.1162/imag.a.910 [paper]

Differentiating BOLD and non-BOLD signals in fMRI time series using cross-cortical depth delay patterns.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[12398] doi:10.1186/s12974-025-03552-x [paper, repository]

Cytokine expression profile in the human brain of older adults.

Journal: Journal of neuroinflammation

Authors' code: RushAlz/Cytokines_public_release (no license)

Status: code verified, 17 files readable, 17 matches

[12399] doi:10.1186/s13244-025-02093-4 [paper, repository]

3D T1 turbo spin echo improves detection of gadolinium-enhancing multiple-sclerosis lesions.

Journal: Insights into imaging

Authors' code: Zenodo 13094029 (GPL-3.0), navalpablo/dicom_sorting_toolkit (GPL-3.0)

Status: code verified, 6 files readable

[12400] doi:10.1371/journal.pbio.3003423 [paper, data]

Nicotine induces abnormal motor coupling through sensitization of a mechanosensory circuit in Caenorhabditis elegans.

Journal: PLoS biology

Status: data only, 1 dataset cited

[12401] doi:10.1371/journal.pcbi.1013545 [paper, repository]

Three types of remapping with linear decoders: A population-geometric perspective.

Journal: PLoS computational biology

Authors' code: guillemarsan/RemappingGeometry (no license)

Status: empty repository, 1 file readable

[12402] doi:10.1371/journal.pone.0332583 [paper, repository]

Neural correlates of the deployment of spatial attention, and their modulation by repetitive movements.

Journal: PloS one

Authors' code: OSF yuhz4 (no license)

Status: code verified, 4 files readable, 15 matches

[12403] doi:10.3389/fnsys.2025.1640639 [paper, repository]

Network-based mapping and neurotransmitter architecture of brain gray matter correlates of extraversion.

Journal: Frontiers in systems neuroscience

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable

[12404] doi:10.3390/neurolint17100159 [paper, repository]

Clinical Methods Supporting Initial Recognition of Early Post-Stroke Seizures: A Systematic Scoping Review.

Journal: Neurology international

Authors' code: OSF bkejc (no license)

Status: empty repository

[12405] doi:10.7554/elife.104220 [paper, data]

Dual transcranial electromagnetic stimulation of the precuneus boosts human long-term memory.

Journal: eLife

Status: data only, 1 dataset cited

[12406] doi:10.7554/elife.90050 [paper, data]

Optogenetic stimulation of single ganglion cells in the living primate fovea.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 2 October 2025 (25 papers)

[12407] doi:10.1007/s12021-025-09744-3 [paper, repository]

A Study of Non-Linear Manifold Feature Extraction in Spike Sorting.

Journal: Neuroinformatics

Authors' code: ArdeleanRichard/Nonlinear-Feature-Extraction-in-SpikeSorting (no license)

Status: code verified, 28 files readable, 7 matches

[12408] doi:10.1016/j.neuron.2025.09.009 [paper, repository]

Hunger modulates exploration through suppression of dopamine signaling in the tail of the striatum.

Journal: Neuron

Authors' code: bernardosabatinilab/Kamath_2025_Hunger (no license), dattalab.github.io/moseq2-website (no license)

Status: code verified, 9 files readable, 2 matches

[12409] doi:10.1016/j.neuron.2025.09.012 [paper, repository]

Hippocampal ripple diversity organizes neuronal reactivation dynamics in the offline brain.

Journal: Neuron

Authors' code: kevin-allen/positrack (GPL-3.0), Zenodo 16995137 (CC-BY-4.0), mcastelli98/ripple-csdprof-classifier (no license)

Status: code verified, 31 files readable, 15 matches

[12410] doi:10.1016/j.stemcr.2025.102649 [paper, data]

Integrated profiling of iPSC-derived motor neurons carrying C9orf72, FUS, TARDBP, or SOD1 mutations.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[12411] doi:10.1038/s41380-025-03282-9 [paper, repository]

Identifying affective state via clustering of temporal variability in limbic activity and mediating role of negative emotion.

Journal: Molecular psychiatry

Authors' code: ABMI/TemporalClusteringEmotion (no license)

Status: code verified, 2 files readable, 3 matches

[12412] doi:10.1038/s41551-025-01501-w [paper, repository]

Minimally invasive implantation of scalable high-density cortical microelectrode arrays for multimodal neural decoding and stimulation.

Journal: Nature biomedical engineering

Authors' code: precision-neuroscience/nbme2025 (Apache-2.0)

Status: code verified, 2 files readable

[12413] doi:10.1038/s41593-025-02068-0 [paper, data]

Single-dose psilocybin rapidly and sustainably relieves allodynia and anxiodepressive-like behaviors in mouse models of chronic pain.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[12414] doi:10.1038/s41598-025-17109-8 [paper, repository]

Fault classification in the architecture of virtual machine using deep learning.

Journal: Scientific reports

Authors' code: kaggle.com/c/telstra-recruiting-network (no license)

Status: dead link

[12415] doi:10.1038/s41598-025-17229-1 [paper, repository]

Rifaximin-induced changes in the gut microbiome associated to improvement of neurotransmission alterations and learning in rats with chronic liver disease.

Journal: Scientific reports

Authors' code: lolapsgp/Rats_HE_CCl4model (no license), picrust/picrust2 (GPL-3.0), ncbi.nlm.nih.gov/bioproject/prjna1125883 (no license)

Status: code verified, 51 files readable, 12 matches

[12416] doi:10.1038/s41598-025-17331-4 [paper, data]

A stacked custom convolution neural network for voxel-based human brain morphometry classification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12417] doi:10.1038/s41598-025-17432-0 [paper, data]

Enhanced brain tumour segmentation using a hybrid dual encoder-decoder model in federated learning.

Journal: Scientific reports

Status: data only, 2 datasets cited

[12418] doi:10.1038/s41598-025-17665-z [paper, repository]

Gum Arabic modulates the microbiota-gut-brain axis and affects general fitness in zebrafish.

Journal: Scientific reports

Authors' code: asdfjohnny1/Gum_Arabic_Manuscript (no license)

Status: code verified, 2 files readable, 3 matches

[12419] doi:10.1159/000548718 [paper, data]

Hemispherotomy for Drug-Resistant Epilepsy in a Low-Resource Setting: Surgical Outcomes and Quality of Life in 23 Children Treated in a Hybrid Program in Panama.

Journal: Pediatric neurosurgery

Status: data only, 1 dataset cited

[12420] doi:10.1186/s11689-025-09643-3 [paper, data]

The neurodevelopmental spectrum of CASK-related disorder.

Journal: Journal of neurodevelopmental disorders

Status: code on request, 1 dataset cited

[12421] doi:10.1186/s12888-025-07351-9 [paper, repository]

Spatiotemporal alterations of thalamo-cortical effective connectivity in major depressive disorder patients.

Journal: BMC psychiatry

Authors' code: yangchengxiao/Thalamic_GC_MDD (no license)

Status: code verified, 3 files readable, 6 matches

[12422] doi:10.1186/s12950-025-00471-9 [paper]

Immunological response and tissue loss in a rodent model of chronic traumatic brain injury treated with resolvin.

Journal: Journal of inflammation (London, England)

Status: code on request

[12423] doi:10.1186/s12983-025-00583-1 [paper, repository]

Tracking domestication signals across populations of North American raccoons (Procyon lotor) via citizen science-driven image repositories.

Journal: Frontiers in zoology

Authors' code: OSF 56xcg (no license)

Status: code verified, 2 files readable, 1 match

[12424] doi:10.1186/s13059-025-03765-6 [paper, repository]

BLEND: probabilistic cellular deconvolution with individualized single-cell reference integration.

Journal: Genome biology

Authors' code: LieberInstitute/Human_DLPFC_Deconvolution (MIT), Voineagulab/BrainCellularComposition (no license), Zenodo 15237115 (CC-BY-4.0)

Status: code verified, 316 files readable, 4 matches

[12425] doi:10.1186/s40708-025-00277-8 [paper, data]

Regulation of tau protein by circCwc27: shared pathogenic mechanisms in type 2 diabetes mellitus and Alzheimer's disease.

Journal: Brain informatics

Status: data only, 1 dataset cited

[12426] doi:10.1371/journal.pbio.3003376 [paper, repository]

Cortical astrocyte histamine-1-receptors regulate intracellular calcium and extracellular adenosine dynamics across sleep and wake.

Journal: PLoS biology

Authors' code: Zenodo 16809849 (CC-BY-4.0)

Status: code verified, 7 files readable, 26 matches

[12427] doi:10.3389/fgene.2025.1665548 [paper, data]

Time-series transcriptomics and alternative splicing analysis of embryonic development of the asian honeybee (<i>Apis cerana</i>).

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[12428] doi:10.3389/fnagi.2025.1591946 [paper, repository]

Predictive gene expression signatures for Alzheimer's disease using post-mortem brain tissue.

Journal: Frontiers in aging neuroscience

Authors' code: ashleyduche/AD_Predictive_Signatures (MIT)

Status: code verified, 6 files readable

[12429] doi:10.3389/fncel.2025.1616470 [paper, data]

Microglia-containing neural organoids as brain microphysiological systems for long-term culture.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[12430] doi:10.3389/fnins.2025.1649733 [paper, repository]

Differences in dynamic functional connectivity between musicians and non-musicians during naturalistic music listening.

Journal: Frontiers in neuroscience

Authors' code: juanitacabral/LEiDA (no license)

Status: code verified, 45 files readable, 7 matches

[12431] doi:10.3390/jcm14196994 [paper, data]

Fully Automated Segmentation of Cervical Spinal Cord in Sagittal MR Images Using Swin-Unet Architectures.

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

Wednesday, 1 October 2025 (138 papers, 113 on this page)

[12432] doi:10.1002/alz.70653 [paper, repository]

The PREVENT-AD cohort: Accelerating Alzheimer's disease research and treatment in Canada and beyond.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: villeneuvelab/vlpp (MIT)

Status: code verified, 37 files readable

[12433] doi:10.1002/alz.70695 [paper, repository]

White matter hyperintensities precede other biomarkers in GRN frontotemporal dementia.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Zenodo 7930159 (CC-BY-4.0)

Status: empty repository

[12434] doi:10.1002/alz.70761 [paper]

Variability of longitudinal sleep monitoring in amyloid-negative and amyloid-positive cognitively unimpaired and mildly impaired older adults.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[12435] doi:10.1002/alz.70762 [paper, repository]

Cortical thickness subtypes in cognitively unimpaired individuals: Differential network and transcriptomic vulnerability to cortical thinning.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 4 matches

[12436] doi:10.1002/alz.70765 [paper]

Body mass index and blood volume influence plasma biomarkers and positron emission tomography classification in preclinical Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[12437] doi:10.1002/alz.70805 [paper, repository]

Alzheimer's disease and its progression reduce pyramidal cell gain and connectivity.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: jlansk/dcm_cmc_ntad (no license)

Status: code verified, 21 files readable, 15 matches

[12438] doi:10.1002/alz.70833 [paper, repository]

Association between low-frequency oscillations in blood pressure variability and brain age derived from neuroimaging.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Zenodo 3476365 (other-open)

Status: code verified

[12439] doi:10.1002/alz.70843 [paper, repository]

Cardiovascular disease as a mediator in the relationship between lifestyle risk factors and cognitive outcomes: a scoping review.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: OSF 7mhp6 (no license)

Status: empty repository

[12440] doi:10.1002/brb3.70812 [paper, data]

Unraveling the Disease Mechanisms of Neuropathic Pain Through Constructing miRNA-mRNA Networks Based on a Rat Model.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[12441] doi:10.1002/brb3.70900 [paper, repository]

Intraoperative Techniques for Language Mapping in Brain Surgery: A Comparison Between Direct Electrical Stimulation (DES) and Electrocorticography (ECoG).

Journal: Brain and behavior

Authors' code: flinkerlab/neural_speech_decoding (GPL-3.0)

Status: code verified, 65 files readable

[12442] doi:10.1002/brb3.70935 [paper]

Disparities in Connectivity Profiles Between Structural and Functional Networks in Patients With Temporal Lobe Epilepsy.

Journal: Brain and behavior

Status: code on request

[12443] doi:10.1002/brb3.70963 [paper, repository]

Cortical Intra-Layer Hypersynchronization in Levodopa-Induced Dyskinesia Mouse Model.

Journal: Brain and behavior

Authors' code: cortex-lab/KiloSort (GPL-2.0)

Status: code verified, 67 files readable, 1 match

[12444] doi:10.1002/brb3.70970 [paper, repository]

Involuntary Attention in Healthy Older Adults at Electroencephalographic Risk of Cognitive Decline: An ERP Study.

Journal: Brain and behavior

Authors' code: dmgroppe/Mass_Univariate_ERP_Toolbox (BSD-3-Clause)

Status: code verified, 69 files readable, 1 match

[12445] doi:10.1002/cne.70098 [paper, data]

Head Color Morph- and Sex-Specific Differences in Follistatin Gene Expression in the Gouldian Finch Brain.

Journal: The Journal of comparative neurology

Status: data only, 1 dataset cited

[12446] doi:10.1002/cnr2.70360 [paper]

Bioinformatic Characterization of Genes That Are Correlated to the Progression of Breast Cancer to Breast Cancer Brain Metastasis.

Journal: Cancer reports (Hoboken, N.J.)

Status: data only

[12447] doi:10.1002/gcc.70085 [paper, repository]

Molecular Landscape of Pediatric Low-Grade Gliomas: Insights From RNA-NGS and Bioinformatic Analysis.

Journal: Genes, chromosomes & cancer

Authors' code: suhrig/arriba (MIT)

Status: code verified, 57 files readable, 2 matches

[12448] doi:10.1002/hbm.70321 [paper, data]

Microstructural Changes in Aging Hippocampal Pathways: Insights From the HCP-Aging Diffusion MRI Study.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[12449] doi:10.1002/hbm.70329 [paper, repository]

Anatomy-Guided, Modality-Agnostic Segmentation of Neuroimaging Abnormalities.

Journal: Human brain mapping

Authors' code: vkola-lab/hbm2025 (MIT)

Status: code verified, 36 files readable, 7 matches

[12450] doi:10.1002/hbm.70333 [paper, data]

Uncertainty, Cognitive Control and Theta-Band Activity: A Relationship That Depends on Metacontrol Requirements.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[12451] doi:10.1002/hbm.70345 [paper, repository]

Divergent Brain Network Activity in Asymptomatic C9orf72 and SOD1 Variant Carriers Compared With Established Amyotrophic Lateral Sclerosis.

Journal: Human brain mapping

Authors' code: alicianorthall/oxford_als (no license), Zenodo 10401793 (CC-BY-4.0), Zenodo 6875060 (BSD-3-Clause)

Status: code verified, 99 files readable, 17 matches

[12452] doi:10.1002/hbm.70348 [paper, repository]

Individual Differences in Developmental Trajectories of Global and Subcortical Brain Volumes Between Late Childhood and Late Adolescence: Findings From a 12-Wave Neuroimaging Study.

Journal: Human brain mapping

Authors' code: OSF wujzs (no license)

Status: code verified, 6 files readable, 1 match

[12453] doi:10.1002/hbm.70349 [paper, repository]

Cross-Modality Comparison of Fetal Brain Phenotypes: Insights From Short-Interval Second-Trimester MRI and Ultrasound Imaging.

Journal: Human brain mapping

Authors' code: SVRTK/SVRTK (Apache-2.0), doi:10.12751/g-node.ysgsy1 (no license)

Status: code verified, 69 files readable

[12454] doi:10.1002/hbm.70351 [paper, repository]

Flexible Reconfigurations of Brain Networks During Decisions With Predefined Versus Self-Generated Options.

Journal: Human brain mapping

Authors' code: neuroecon/Decision_Network_Reconfig (no license)

Status: code verified, 196 files readable, 12 matches

[12455] doi:10.1002/hbm.70352 [paper, repository]

Subcortical Hubs of Brain Networks Sustaining Human Consciousness.

Journal: Human brain mapping

Authors' code: ComaRecoveryLab/Subcortical_Network_Hubs (no license)

Status: code verified, 1 file readable

[12456] doi:10.1002/hbm.70353 [paper, data]

The Impact of Multiband and In-Plane Acceleration on White Matter Microstructure Analysis.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[12457] doi:10.1002/hbm.70355 [paper, repository]

Wavelet Analysis of Dual-fMRI-Hyperscanning Reveals Cooperation and Communication Dependent Effects on Interbrain Neuronal Coherence.

Journal: Human brain mapping

Authors' code: OSF qfx32 (no license)

Status: code verified, 7 files readable, 6 matches

[12458] doi:10.1002/hbm.70357 [paper, data]

Automated MRI Segmentation of Brainstem Nuclei Critical to Consciousness.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[12459] doi:10.1002/hbm.70360 [paper, repository]

Applying Bayesian Multilevel Modeling to Single Trial Dynamics: A Demonstration in Aversive Conditioning.

Journal: Human brain mapping

Authors' code: OSF hfbjp (no license)

Status: code verified, 51 files readable, 14 matches

[12460] doi:10.1002/hbm.70364 [paper, repository]

st-DenseViT: A Weakly Supervised Spatiotemporal Vision Transformer for Dense Prediction of Dynamic Brain Networks.

Journal: Human brain mapping

Authors' code: bkazemivash/Scepter (MIT)

Status: code verified, 19 files readable, 6 matches

[12461] doi:10.1002/hbm.70367 [paper, repository]

Deep Learning for fODF Estimation in Infant Brains: Model Comparison, Ground-Truth Impact, and Domain Shift Mitigation.

Journal: Human brain mapping

Authors' code: Medical-Image-Analysis-Laboratory/dl_fiber_domain_shift (MIT)

Status: code verified, 27 files readable, 8 matches

[12462] doi:10.1002/hbm.70369 [paper, repository]

Altered Brain Network Dynamics in Schizophrenia Patients With Predominant Negative Symptoms: A Resting-State fMRI Study Using Co-Activation Pattern Analysis.

Journal: Human brain mapping

Authors' code: bbfrederick/capcalc (Apache-2.0), hisonWarren/co-activation-pattern-analysis (MIT)

Status: code verified, 51 files readable, 11 matches

[12463] doi:10.1002/hbm.70373 [paper, repository]

Similarity in Early Life Stress Exposure Is Associated With Similarity in Neural Representations in Early Adulthood.

Journal: Human brain mapping

Authors' code: OSF j6bh2 (no license)

Status: code verified, 1 file readable, 2 matches

[12464] doi:10.1002/hbm.70382 [paper, data]

Progressive Changes Between Thalamic Nuclei and Cortical Networks Across Stimulus-Response Learning.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[12465] doi:10.1002/hbm.70384 [paper, repository]

Automated Segmentation of the Pituitary and Pineal Glands.

Journal: Human brain mapping

Authors' code: Kathleen-Larson/PGlandsSeg (no license)

Status: code verified, 10 files readable, 5 matches

[12466] doi:10.1002/jcsm.70095 [paper, repository]

Association of Android and Gynoid Fatness With Incident Dementia and Brain Structure.

Journal: Journal of cachexia, sarcopenia and muscle

Authors' code: biobank.ndph.ox.ac.uk/showcase/showcase (no license)

Status: code verified

[12467] doi:10.1002/jev2.70168 [paper, repository]

Heterogeneity of Extracellular Vesicles and Non-Vesicular Nanoparticles in Glioblastoma.

Journal: Journal of extracellular vesicles

Authors' code: shengqh/TIGER (Apache-2.0)

Status: code verified, 25 files readable, 2 matches

[12468] doi:10.1002/jev2.70175 [paper, data]

Hybrid Extracellular Vesicles With Combined Functional Properties From Mesenchymal Stem Cells and Astrocytes for Targeted Neurodegenerative Disease Applications.

Journal: Journal of extracellular vesicles

Status: data only, 1 dataset cited

[12469] doi:10.1002/nbm.70125 [paper, repository]

Comparison of Low-Rank Denoising Methods for Dynamic Deuterium MRSI at 7 T.

Journal: NMR in biomedicine

Authors' code: annaduguid/denoise-MRSI-tools (no license), XinyuanZhang719/gl-hosvd (no license)

Status: code verified, 36 files readable, 8 matches

[12470] doi:10.1002/trc2.70187 [paper, repository]

Association between 24-h time-use composition and brain age: The IGNITE study.

Journal: Alzheimer's & dementia (New York, N. Y.)

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable, 1 match

[12471] doi:10.1007/s13659-025-00541-8 [paper, data]

Neuroprotective effects of chemical constituents from Nicotiana tabacum L. in Parkinson's disease.

Journal: Natural products and bioprospecting

Status: data only, 1 dataset cited

[12472] doi:10.1016/j.dcn.2025.101622 [paper, repository]

Growing minds, integrating senses: Neural and computational insights into age-related changes in audio-visual and tactile-visual learning in children.

Journal: Developmental cognitive neuroscience

Authors' code: OSF cmzne (no license)

Status: code verified, 56 files readable, 18 matches

[12473] doi:10.1016/j.namjnl.2025.100064 [paper, data]

Nonclinical human neural new approach methodologies (NAMs): Electrophysiological assessment of opioid agonist and antagonist combination.

Journal: NAM journal

Status: data only, 1 dataset cited

[12474] doi:10.1016/j.neuroimage.2025.121502 [paper, repository]

HyPER: Region-specific hypersampling of fMRI to resolve low-frequency, respiratory, and cardiac pulsations, revealing age-related differences.

Journal: NeuroImage

Authors' code: nda.nih.gov (no license)

Status: code verified

[12475] doi:10.1016/j.patter.2025.101368 [paper, data]

Neural mechanisms of visual quality perception and adaptability in the visual pathway.

Journal: Patterns (New York, N.Y.)

Status: code on request, 2 datasets cited

[12476] doi:10.1016/j.phro.2025.100865 [paper, repository]

Clinical target volumes for glioma - Automated delineation to improve neuroanatomic consistency.

Journal: Physics and imaging in radiation oncology

Authors' code: GregoryButi/openCTV (no license)

Status: code verified, 38 files readable, 4 matches

[12477] doi:10.1016/j.xcrm.2025.102402 [paper, repository]

A sequential dual-site repetitive transcranial magnetic stimulation for major depressive disorder: A randomized clinical trial.

Journal: Cell reports. Medicine

Authors' code: Shitong-Xiang/Dual_Site_TMS_MDD (no license)

Status: code verified, 10 files readable

[12478] doi:10.1038/s41467-025-63753-z [paper, repository]

Disentangling associations between complex traits and cell types with seismic.

Journal: Nature communications

Authors' code: ylaboratory/seismic-analysis (BSD-3-Clause), ylaboratory/seismic (BSD-3-Clause)

Status: code verified, 77 files readable, 21 matches

[12479] doi:10.1038/s41467-025-63792-6 [paper, repository]

Reduced brain structural similarity is associated with maturation, neurobiological features, and clinical status in schizophrenia.

Journal: Nature communications

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), brainchart/Lifespan (no license), netneurolab/netneurotools (BSD-3-Clause), NeuroimagingBrainNetworks/NeurobiologyMINDPsychosis (GPL-3.0), isebenius/MIND (no license), NeuroimagingBrainNetworks/cca_pls_toolkit (GPL-3.0)

Status: code verified, 293 files readable, 12 matches

[12480] doi:10.1038/s41467-025-63795-3 [paper, repository]

Spatial attention selectively alters visual cortical representation during target anticipation.

Journal: Nature communications

Authors' code: vistalab/vistasoft (no license), WinawerLab/prfVista (MIT), ekintuncok/Attention_pRF (MIT), Zenodo 16414710 (MIT), Zenodo 16414711 (MIT)

Status: code verified, 2,301 files readable, 28 matches

[12481] doi:10.1038/s41467-025-63824-1 [paper, data]

Synthetic chaperone based on Hsp90-Tau interaction inhibits Tau aggregation and rescues physiological Tau-Microtubule interaction.

Journal: Nature communications

Status: data only, 1 dataset cited

[12482] doi:10.1038/s41467-025-63825-0 [paper]

Transfer learning via distributed brain recordings enables reliable speech decoding.

Journal: Nature communications

Status: code on request

[12483] doi:10.1038/s41467-025-63826-z [paper, repository]

Functional ultrasound neuroimaging reveals mesoscopic organization of saccades in the lateral intraparietal area.

Journal: Nature communications

Authors' code: circstat/circstat-matlab (no license), wsgriggs2/PPC_directional_tuning (GPL-3.0), Zenodo 15122174 (GPL-3.0)

Status: code verified, 702 files readable, 24 matches

[12484] doi:10.1038/s41467-025-63831-2 [paper]

Wafer-scale fabrication of memristive passive crossbar circuits for brain-scale neuromorphic computing.

Journal: Nature communications

Status: code on request

[12485] doi:10.1038/s41551-025-01496-4 [paper, repository]

Large-scale visualization of α-synuclein oligomers in Parkinson's disease brain tissue.

Journal: Nature biomedical engineering

Authors' code: Zenodo 10610924 (CC-BY-4.0), Zenodo 10610657 (CC-BY-4.0), Zenodo 8319436 (CC-BY-4.0)

Status: code verified

[12486] doi:10.1038/s41586-025-09588-6 [paper, data]

Autoimmune response to C9orf72 protein in amyotrophic lateral sclerosis.

Journal: Nature

Status: data only, 7 datasets cited

[12487] doi:10.1038/s41592-025-02783-3 [paper, repository]

HippoMaps: multiscale cartography of human hippocampal organization.

Journal: Nature methods

Authors' code: MICA-MNI/hippomaps (GPL-3.0), hippomaps.readthedocs.io (no license)

Status: code verified, 14 files readable

[12488] doi:10.1038/s41598-025-16257-1 [paper, repository]

High-resolution conditional MR image synthesis through the PACGAN framework.

Journal: Scientific reports

Authors' code: Zenodo 8276786 (other-at), aiformedresearch/PACGAN (other)

Status: code verified, 14 files readable, 10 matches

[12489] doi:10.1038/s42003-025-08812-3 [paper, repository]

Slow-wave sleep and REM sleep differentially contribute to memory representational transformation.

Journal: Communications biology

Authors' code: OSF 4e7bx (no license)

Status: code verified, 4 files readable, 3 matches

[12490] doi:10.1038/s44321-025-00312-5 [paper, data]

A neuroprotective tetrapeptide for treatment of acute traumatic brain injury.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[12491] doi:10.1038/s44400-025-00031-1 [paper, repository]

Augmenting radiological assessment of imaging evident dementias with radiomic analysis.

Journal: NPJ dementia

Authors' code: vkola-lab/npjdementia2025 (MIT)

Status: code verified, 34 files readable, 13 matches

[12492] doi:10.1093/bioinformatics/btaf546 [paper, data]

Oncopacket: integration of cancer research data using GA4GH phenopackets.

Journal: Bioinformatics (Oxford, England)

Status: data only, 1 dataset cited

[12493] doi:10.1093/brain/awaf036 [paper, data]

Dynamic reorganization of task-related network interactions in post-stroke aphasia recovery.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[12494] doi:10.1093/brain/awaf051 [paper, repository]

Parkinson's disease mutant Miro1 causes mitochondrial dysfunction and dopaminergic neuron loss.

Journal: Brain : a journal of neurology

Authors' code: gitlab.lcsb.uni.lu/dvb/saraiva_2023 (Apache-2.0)

Status: code verified, 33 files readable

[12495] doi:10.1093/brain/awaf056 [paper, repository]

Ventromedial prefrontal cortex lesions disrupt learning to reward others.

Journal: Brain : a journal of neurology

Authors' code: OSF fcq32 (no license)

Status: code verified, 253 files readable, 7 matches

[12496] doi:10.1093/brain/awaf179 [paper, repository]

Selective vulnerability and resilience to Alzheimer's disease tauopathy as a function of genes and the connectome.

Journal: Brain : a journal of neurology

Authors' code: Raj-Lab-UCSF (no license)

Status: code verified

[12497] doi:10.1093/brain/awaf204 [paper, repository]

The parasagittal dural space of the human brain.

Journal: Brain : a journal of neurology

Authors' code: hettk/spesis (other), hettk/chp_seg (no license)

Status: empty repository, 3 files readable

[12498] doi:10.1093/brain/awaf228 [paper, repository]

Stimulants for disorders of consciousness in the intensive care unit: a randomized, placebo-controlled trial.

Journal: Brain : a journal of neurology

Authors' code: lilleoel/clintools (other)

Status: code verified, 32 files readable, 1 match

[12499] doi:10.1093/brain/awaf235 [paper, data]

Extreme exercise in males is linked to mTOR signalling and onset of amyotrophic lateral sclerosis.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[12500] doi:10.1093/brain/awaf285 [paper, repository]

Deep learning-based cell type profiles reveal signatures of Alzheimer's disease resilience and resistance.

Journal: Brain : a journal of neurology

Authors' code: elo-nsrb/CellformerRNA (no license), LieberInstitute/10xPilot_snRNAseq-human (Artistic-2.0)

Status: code verified, 151 files readable, 8 matches

[12501] doi:10.1093/braincomms/fcaf337 [paper, repository]

Systemic increase of AMPA receptors associated with cognitive impairment of long COVID.

Journal: Brain communications

Authors' code: stsugawa/AMPA_COVID_PLS (no license)

Status: code verified, 3 files readable

[12502] doi:10.1093/braincomms/fcaf372 [paper, data]

Single-nucleus RNA sequencing: immature excitatory neurons and transformed glia build human BRAF<sup>V600E</sup>-negative gangliogliomas.

Journal: Brain communications

Status: data only, 1 dataset cited

[12503] doi:10.1093/cercor/bhaf275 [paper, repository]

Shared phonological networks in frontal and temporal cortex for language production and comprehension.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF bhfdw (no license)

Status: code verified, 3 files readable, 6 matches

[12504] doi:10.1093/cercor/bhaf279 [paper, data]

Stimulation of the right dorsolateral prefrontal cortex reduces conflict-induced forgetting.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[12505] doi:10.1093/cercor/bhaf283 [paper, repository]

The time-course of action control: measuring conditioned action tendencies and action suppression using transcranial magnetic stimulation.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: nicolasmcnair/MEPAnalysis (GPL-3.0)

Status: code verified, 11 files readable

[12506] doi:10.1093/cercor/bhaf284 [paper, repository]

Temporal propagation of neural state boundaries in naturalistic context.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: dynac-lab/temporal_propagation (no license)

Status: code verified, 35 files readable, 7 matches

[12507] doi:10.1093/cercor/bhaf285 [paper, repository]

Neural oscillations of metacognition: evidence for domain-specificity and age-related compensation.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF ugbvc (no license)

Status: code verified, 12 files readable, 8 matches

[12508] doi:10.1093/genetics/iyaf156 [paper, data]

Multiple autism genes influence GABA neuron remodeling via distinct developmental trajectories.

Journal: Genetics

Status: data only, 1 dataset cited

[12509] doi:10.1093/gerona/glaf196 [paper, repository]

A genome-wide association study identified 10 novel genomic loci associated with intrinsic capacity.

Journal: The journals of gerontology. Series A, Biological sciences and medical sciences

Authors' code: cog-genomics.org/plink/2.0 (no license), yanglab.westlake.edu.cn/software/gcta (no license), bulik/ldsc (GPL-3.0), getian107/PRScsx (MIT)

Status: code verified, 33 files readable

[12510] doi:10.1093/gpbjnl/qzaf063 [paper, repository]

Whole-genome Sequence Analysis Revealed Novel Subjective Cognitive Decline-associated Genes in 10,763 Chinese.

Journal: Genomics, proteomics & bioinformatics

Authors' code: ngdc.cncb.ac.cn/biocode/tools (no license)

Status: code verified

[12511] doi:10.1093/gpbjnl/qzaf064 [paper, repository]

Regulatory Genomic Circuitry of Brain Age by Integrative Functional Genomic Analyses.

Journal: Genomics, proteomics & bioinformatics

Authors' code: ZhaoXM-Lab/BrainAgepredict (no license), ngdc.cncb.ac.cn/biocode/tool (no license)

Status: code verified, 19 files readable, 8 matches

[12512] doi:10.1093/jamia/ocaf091 [paper, repository]

Breaking data silos: incorporating the DICOM imaging standard into the OMOP CDM to enable multimodal research.

Journal: Journal of the American Medical Informatics Association : JAMIA

Authors' code: paulnagy/DICOM2OMOP (Apache-2.0)

Status: code verified, 18 files readable, 3 matches

[12513] doi:10.1093/nar/gkaf1002 [paper, data]

Dysregulation of AGO2-miRNA dynamics underlies the AGO2-associated Lessel-Kreienkamp syndrome.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[12514] doi:10.1093/nar/gkaf1061 [paper, repository]

Nucleosome context regulates chromatin reader preference.

Journal: Nucleic acids research

Authors' code: broadinstitute/gtex-pipeline (BSD-3-Clause)

Status: code verified, 39 files readable

[12515] doi:10.1093/neuonc/noaf101 [paper, repository]

High peritumoral network connectedness in glioblastoma reveals a distinct epigenetic signature and is associated with decreased overall survival.

Journal: Neuro-oncology

Authors' code: coscine.de (no license)

Status: code verified

[12516] doi:10.1093/neuonc/noaf106 [paper]

Dual aVß8 Integrin and PD-1 Blockade Overcomes TGFβ-Mediated B-Cell Suppression to Enhance Anti-Tumor Immunity.

Journal: Neuro-oncology

Status: code on request

[12517] doi:10.1093/neuonc/noaf113 [paper, repository]

Charting the single-cell and spatial landscape of IDH-wild-type glioblastoma with GBmap.

Journal: Neuro-oncology

Authors' code: ccruizm/GBmap (no license), Moldia/GBmap_ISS (no license)

Status: code verified, 23 files readable, 11 matches

[12518] doi:10.1093/sleep/zsaf115 [paper, data]

The subcortical correlates of self-reported sleep quality.

Journal: Sleep

Status: data only, 1 dataset cited

[12519] doi:10.1093/toxsci/kfaf101 [paper, repository]

Perfluorooctanesulfonic acid (PFOS) antagonizes gamma-aminobutyric acid (GABA) receptors in larval zebrafish and mammalian models.

Journal: Toxicological sciences : an official journal of the Society of Toxicology

Authors' code: Zenodo 11396730 (GPL-3.0), Singh-Lab/bom-pooling (no license)

Status: code verified, 11 files readable

[12520] doi:10.1097/phm.0000000000002778 [paper, data]

Seven-Year Intervention Rate and Effect of Early Rehabilitation in China: A National-Wide Hospital-Based Study.

Journal: American journal of physical medicine & rehabilitation

Status: data only, 1 dataset cited

[12521] doi:10.1098/rsif.2025.0336 [paper, repository]

Stroke impairs the proactive control of dynamic balance during predictable treadmill accelerations.

Journal: Journal of the Royal Society, Interface

Authors' code: OSF t8ue4 (no license)

Status: code verified, 2 files readable, 3 matches

[12522] doi:10.1098/rsif.2025.0441 [paper, repository]

Machine learning predictions from unpredictable chaos.

Journal: Journal of the Royal Society, Interface

Authors' code: Zenodo 16364096 (CC-BY-4.0), doi:10.6084/m9.figshare.c.8022544 (no license)

Status: code verified, 24 files readable, 5 matches

[12523] doi:10.1101/gr.280554.125 [paper, data]

Molecular and genetic landscapes of retina and brain microglia in neurodegenerative diseases.

Journal: Genome research

Status: data only, 1 dataset cited

[12524] doi:10.1111/bpa.70044 [paper, repository]

3D imaging of neuronal inclusions and protein aggregates in human neurodegeneration by multiscale x-ray phase-contrast tomography.

Journal: Brain pathology (Zurich, Switzerland)

Authors' code: Zenodo 12566945 (CC-BY-4.0)

Status: code verified, 1 file readable, 1 match

[12525] doi:10.1111/cns.70632 [paper, repository]

LRR-UNet: A Deep Unfolding Network With Low-Rank Recovery for EEG Signal Denoising.

Journal: CNS neuroscience & therapeutics

Authors' code: ncclabsustech/EEGdenoiseNet (MIT)

Status: code verified, 67 files readable, 7 matches

[12526] doi:10.1111/cns.70634 [paper, repository]

Integrated Multi-Omics Analysis and Cross-Model Validation Reveal Mitochondrial Signatures in Alzheimer's Disease.

Journal: CNS neuroscience & therapeutics

Authors' code: XuanXu1230/ML-AD (no license)

Status: code verified, 9 files readable, 11 matches

[12527] doi:10.1111/ejn.70263 [paper]

Periodic and Aperiodic Alterations of Resting-State EEG in Schizophrenia Spectrum Disorders: Cognitive and Clinical Insights.

Journal: The European journal of neuroscience

Status: code on request

[12528] doi:10.1111/ejn.70270 [paper, data]

Acute Supplementation of Beta-Hydroxybutyrate Increases Visual Cortical Excitability in Humans: A Combined Electro-EncephaloGraphy and Magnetic Resonance Spectroscopy Study.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[12529] doi:10.1111/ejn.70276 [paper, repository]

Resting-State Functional MRI Analyses for Brain Activity Characterization: A Narrative Review of Features and Methods.

Journal: The European journal of neuroscience

Authors' code: OSF pkz3j (no license)

Status: empty repository

[12530] doi:10.1111/ejn.70283 [paper, repository]

Shielding the Mind With Flow: Attention Allocation and Auditory Event-Related Potentials Under Varying Mental Workload.

Journal: The European journal of neuroscience

Authors' code: OSF vfcjd (no license)

Status: empty repository

[12531] doi:10.1111/jcmm.70771 [paper, data]

Unique Genetic and Epigenetic Alterations in Glioblastoma Long-Term Survivors: Insights From Two Clinical Cases.

Journal: Journal of cellular and molecular medicine

Status: data only, 2 datasets cited

[12532] doi:10.1111/jsr.70205 [paper, repository]

A Meta-Analysis of the Effects of Acute Sleep Deprivation on the Cortical Transcriptome in Rodent Models.

Journal: Journal of sleep research

Authors' code: rhoadsco/Sleep-Deprivation-MetaAnalysis (no license)

Status: code verified, 1 file readable, 2 matches

[12533] doi:10.1111/micc.70027 [paper, repository]

Blood Flow Simulation and Uncertainty Quantification in Extensive Microvascular Networks: Application to Brain Cortical Networks.

Journal: Microcirculation (New York, N.Y. : 1994)

Authors' code: neuro8000/NetInf (GPL-3.0), Zenodo 15373376 (CC-BY-4.0)

Status: code verified, 33 files readable, 4 matches

[12534] doi:10.1111/psyp.70160 [paper, repository]

Error-Related Brain Activity Indicates Immediate Auto-Cancellation of Action Slips.

Journal: Psychophysiology

Authors' code: OSF 4vncf (no license)

Status: code verified, 12 files readable, 5 matches

[12535] doi:10.1111/psyp.70162 [paper, data]

Cognitive Resources and the Engagement of the Precuneus During Irony Processing.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[12536] doi:10.1111/psyp.70163 [paper, repository]

Spontaneous Modulation of Standard EEG Frequency Bands During a Neurofeedback-Like Task.

Journal: Psychophysiology

Authors' code: OSF ep2kh (no license)

Status: code verified, 15 files readable, 4 matches

[12537] doi:10.1111/psyp.70168 [paper, repository]

Cardiac Signals Facilitate the Breakthrough to Awareness of Emotional Stimuli.

Journal: Psychophysiology

Authors' code: OSF f6btp (no license)

Status: code verified, 1 file readable

[12538] doi:10.1117/1.bios.2.4.045002 [paper]

Investigation of quantitative structural changes in astrocyte cells after laser-induced shockwave.

Journal: Biophotonics discovery

Status: code on request

[12539] doi:10.1117/1.nph.12.4.045007 [paper, repository]

Accelerating myelin defect detection in neurodegenerative disorders: a human-in-the-loop deep learning approach with birefringence microscopy.

Journal: Neurophotonics

Authors' code: arjunchandra2/Myelin-Defect-Detection (no license)

Status: code verified, 17 files readable, 2 matches

[12540] doi:10.1117/1.nph.12.4.045008 [paper, repository]

Transformer-based deep learning model for predicting fNIRS short-channel signals.

Journal: Neurophotonics

Authors' code: vbankers/fNIRSTransformer (no license)

Status: code verified, 7 files readable, 1 match

[12541] doi:10.1117/1.nph.12.4.045009 [paper]

Improving interference control without conflict exposure: prefrontal fNIRS-decoded neurofeedback training.

Journal: Neurophotonics

Status: code on request

[12542] doi:10.1117/1.nph.12.4.045010 [paper]

Phantom for standardization in functional near-infrared spectroscopy, part 1: implementation and usage.

Journal: Neurophotonics

Status: code on request

[12543] doi:10.1117/1.nph.12.4.045011 [paper]

NIRS frequency analysis to evaluate cerebrovascular reactivity after acute brain injury.

Journal: Neurophotonics

Status: code on request

[12544] doi:10.1117/1.nph.12.4.045012 [paper, data]

Significant interactions in infant operculum regions when exposed to a bilingual environment: a resting-state fNIRS study.

Journal: Neurophotonics

Status: data only, 1 dataset cited

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.