Every paper, by date: page 57

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 57 of 200: 1 October 2025 to 25 September 2025.

Wednesday, 1 October 2025 (138 papers, 25 on this page)

[12545] doi:10.1117/1.nph.12.4.045013 [paper]

Rapid axially scanned and de-scanned line-scan confocal microscopy with a tunable acoustic gradient index of refraction lens for high-speed volumetric <i>in vivo</i> imaging.

Journal: Neurophotonics

Status: code on request

[12546] doi:10.1126/sciadv.adu9136 [paper, repository]

High-resolution in vivo kinematic tracking with customized injectable fluorescent nanoparticles.

Journal: Science advances

Authors' code: markolab/manuscripts-fluorescent-nanoparticles (MIT)

Status: code verified, 43 files readable, 9 matches

[12547] doi:10.1158/2159-8290.cd-24-1555 [paper, repository]

Extrachromosomal DNA-Driven Oncogene Spatial Heterogeneity and Evolution in Glioblastoma.

Journal: Cancer discovery

Authors' code: MagnusHaughey/spatial_ecDNA_patterns (MIT), codeocean:9429295 (no license), codeocean.com/widget.js (no license)

Status: code verified, 10 files readable, 2 matches

[12548] doi:10.1167/iovs.66.13.23 [paper]

Visual Snow Is Susceptible to the Motion Aftereffect.

Journal: Investigative ophthalmology & visual science

Status: code on request

[12549] doi:10.1167/iovs.66.13.37 [paper, data]

Spatial Proteomic Analysis Highlights Molecular Reprogramming in Optic Nerve Invasive Retinoblastoma.

Journal: Investigative ophthalmology & visual science

Status: data only, 3 datasets cited

[12550] doi:10.1167/iovs.66.13.54 [paper, data]

Neurobehavioral Changes in Macular Degeneration: Spatial Frequency Use in Scene Recognition.

Journal: Investigative ophthalmology & visual science

Status: data only, 1 dataset cited

[12551] doi:10.1167/jov.25.12.18 [paper, repository]

Attention-induced perceptual traveling waves in binocular rivalry.

Journal: Journal of vision

Authors' code: OSF rzemw (no license)

Status: code verified, 5 files readable, 6 matches

[12552] doi:10.1167/jov.25.12.2 [paper, data]

Individual variability in steady-state VEP responses for hues sweeping around cardinal color axes: Clues to cortical color coding?

Journal: Journal of vision

Status: data only, 1 dataset cited

[12553] doi:10.1172/jci191867 [paper, data]

GPIHBP1, lipoprotein lipase, and triglyceride-rich lipoproteins in capillaries of the choroid plexus and circumventricular organs.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[12554] doi:10.1186/s12885-025-14934-y [paper, data]

POLD3 knockdown effects on low-grade glioma: insights from bioinformatics and experimental validation.

Journal: BMC cancer

Status: data only, 1 dataset cited

[12555] doi:10.1186/s12915-025-02404-7 [paper, repository]

Structural variant landscape provides insights into genome organisation and domestication in European seabass.

Journal: BMC biology

Authors' code: jbelyeu/plotcritic (MIT), JiaoZexin/European-Seabass-SV-landscape (no license)

Status: code verified, 20 files readable, 3 matches

[12556] doi:10.1186/s12967-025-06915-3 [paper, data]

Interplay of axon regeneration genes and immune infiltration in spinal cord injury.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[12557] doi:10.1186/s13024-025-00892-3 [paper, repository]

Molecular hallmarks of excitatory and inhibitory neuronal resilience to Alzheimer's disease.

Journal: Molecular neurodegeneration

Authors' code: hidelab/ADresilience_CastanhoNaderi (MIT)

Status: code verified, 112 files readable, 19 matches

[12558] doi:10.1186/s13229-025-00682-0 [paper, repository]

Divergent aperiodic slope and alpha dynamics expose cortical excitability gradients in fragile X syndrome.

Journal: Molecular autism

Authors' code: cincibrainlab/u54-p1-fooof (no license)

Status: dead link

[12559] doi:10.1371/journal.pone.0329647 [paper, data]

LncRNA RP11-818O24.3 regulates proliferation and differentiation of hair follicle stem cells by targeting FGF2/PI3K/AKT pathway.

Journal: PloS one

Status: data only, 1 dataset cited

[12560] doi:10.23736/s1973-9087.25.08685-x [paper, data]

Development and validation of interpretability cutoffs for the short forms of the Brain Injury Rehabilitation Trust Personality Questionnaires (BIRT-PQs).

Journal: European journal of physical and rehabilitation medicine

Status: data only, 1 dataset cited

[12561] doi:10.3389/fnhum.2025.1647425 [paper, data]

Hormonal contraceptive use is associated with reduced central serotonergic activity indexed by the loudness dependence of auditory evoked potentials.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[12562] doi:10.3389/fnins.2025.1544748 [paper, repository]

Smooth dynamic <i>T<sub>2</sub> <sup>*</sup></i> mapping in fMRI based on a novel, total variation-minimizing algorithm for efficient multi-echo BOLD time series denoising with high signal-to-noise and contrast-to-noise ratios.

Journal: Frontiers in neuroscience

Authors' code: fil.ion.ucl.ac.uk/spm/software (no license), SteenMoeller/NORDIC_Raw (other), afni.nimh.nih.gov (no license)

Status: code verified, 7 files readable

[12563] doi:10.3389/fnins.2025.1546203 [paper, repository]

Exploring the relationship between <i>GBA1</i> host genotype and gut microbiome in the <i>GBA1</i> <sup>L444P/WT</sup> mouse model: implications for Parkinson's disease pathogenesis.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 14864459 (CC-BY-4.0), Zenodo 15757420 (CC-BY-4.0), Zenodo 15351304 (CC-BY-4.0), Zenodo 15132493 (CC-BY-4.0), Zenodo 14864460 (CC-BY-4.0)

Status: code verified, 4 files readable

[12564] doi:10.3390/cells14191540 [paper, data]

Integrated Spatial and Single-Cell Transcriptomics Reveals Poor Prognostic Ligand-Receptor Pairs in Glioblastoma.

Journal: Cells

Status: data only, 1 dataset cited

[12565] doi:10.3390/medicina61101773 [paper]

A Comprehensive Analysis of the Management of Brain Metastases-Experience from a South-Eastern European Neurosurgical Centre.

Journal: Medicina (Kaunas, Lithuania)

Status: code on request

[12566] doi:10.3390/s25196021 [paper, data]

Forehead and In-Ear EEG Acquisition and Processing: Biomarker Analysis and Memory-Efficient Deep Learning Algorithm for Sleep Staging with Optimized Feature Dimensionality.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[12567] doi:10.7150/ijbs.117249 [paper, data]

Spatial Cell Atlas of Lateral Septum Reveals Changes Underlying Anxiety and Fear Learning Deficits in Mice with Abnormal Immunity.

Journal: International journal of biological sciences

Status: data only, 1 dataset cited

[12568] doi:10.7554/elife.106403 [paper, repository]

Patchy striatonigral neurons modulate locomotor vigor in response to environmental valence.

Journal: eLife

Authors' code: liang-bo/StriosomeProject (MIT)

Status: code verified, 48 files readable, 1 match

[12569] doi:10.7554/elife.106614 [paper, repository]

The influence of temporal context on vision over multiple time scales.

Journal: eLife

Authors' code: OSF 9qfdk (no license)

Status: code verified

Tuesday, 30 September 2025 (63 papers)

[12570] doi:10.1007/s00234-025-03781-0 [paper, repository]

Spatiotemporal patterns of amyloid deposition as prognostic markers of Alzheimer's disease.

Journal: Neuroradiology

Authors' code: ucl-pond/pySuStaIn (MIT)

Status: code verified, 19 files readable, 6 matches

[12571] doi:10.1007/s10334-025-01297-5 [paper, repository]

Evaluation of tractography parameters for dentato-rubro-thalamic tract reconstruction during pediatric posterior fossa tumor surgery.

Journal: Magma (New York, N.Y.)

Authors' code: delucaal/MRIToolkit (LGPL-3.0)

Status: code verified, 218 files readable, 5 matches

[12572] doi:10.1007/s11060-025-05224-5 [paper, data]

Unravelling genomic differences in cerebrospinal fluid: patients with lung cancer with combined brain parenchymal and meningeal metastasis versus exclusive meningeal metastasis.

Journal: Journal of neuro-oncology

Status: data only, 1 dataset cited

[12573] doi:10.1007/s12021-025-09741-6 [paper, repository]

Reducing Inter-Individual Differences in Task fMRI Preprocessing with OGRE (One-Step General Registration and Extraction) Preprocessing.

Journal: Neuroinformatics

Authors' code: PhilipLab/OGRE-pipeline (BSD-2-Clause)

Status: code verified, 222 files readable, 8 matches

[12574] doi:10.1007/s12672-025-03500-4 [paper, repository]

Integrative multi-omics analysis identifies AEBP1 and EFEMP2 as key regulators of immune heterogeneity and therapeutic response in glioblastoma.

Journal: Discover oncology

Authors' code: yinyiyy/Glioblastoma_Bioinformatics_Analysis (no license)

Status: code verified, 4 files readable, 3 matches

[12575] doi:10.1007/s12672-025-03621-w [paper]

Driver gene-specific prevalence and incidence of brain metastases in non-small cell lung cancer: a meta-analysis encompassing all disease stages.

Journal: Discover oncology

Status: code on request

[12576] doi:10.1007/s13760-025-02897-7 [paper, data]

Elucidate biomarkers and the molecular pathways associated with genetic variants that contribute to the etiology of Parkinson's disease.

Journal: Acta neurologica Belgica

Status: data only, 2 datasets cited

[12577] doi:10.1016/j.celrep.2025.116364 [paper]

Sensory origin of visually evoked activity in auditory cortex.

Journal: Cell reports

Status: code on request

[12578] doi:10.1016/j.ebiom.2025.105941 [paper, data]

Poor sleep health is associated with older brain age: the role of systemic inflammation.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[12579] doi:10.1016/j.ebiom.2025.105955 [paper, repository]

Exploring electroencephalographic chronic pain biomarkers: a mega-analysis.

Journal: EBioMedicine

Authors' code: OSF 4qmyw (no license), OSF mru42 (no license)

Status: code verified, 108 files readable, 16 matches

[12580] doi:10.1016/j.isci.2025.113665 [paper, repository]

Impaired axon regeneration and heightened synaptic dynamics in the injured aged mammalian cortex.

Journal: iScience

Authors' code: CherBass/ModellingAgingInjury (no license)

Status: dead link

[12581] doi:10.1016/j.isci.2025.113667 [paper, repository]

Numerical discrimination in Danionella.

Journal: iScience

Authors' code: figshare 28271237 (CC-BY-4.0)

Status: code verified, 1 file readable, 1 match

[12582] doi:10.1016/j.neuroimage.2025.121489 [paper, repository]

Early White Matter Microstructure Alterations in Infants with Down Syndrome.

Journal: NeuroImage

Authors' code: ale-nasir/WMMA-Infants-DS-Pipeline (no license)

Status: empty repository, 1 file readable

[12583] doi:10.1016/j.neurom.2025.08.412 [paper, data]

Correlation of Electrical Impedance and Evoked Potentials With Properties of the Electrode Interface Using in Situ Block-Face Imaging of the Rat Pelvic Nerve.

Journal: Neuromodulation : journal of the International Neuromodulation Society

Status: data only, 1 dataset cited

[12584] doi:10.1016/j.neuron.2025.08.030 [paper, repository]

Ultra-high-density Neuropixels probes improve detection and identification in neuronal recordings.

Journal: Neuron

Authors' code: zhiwen10/Neuropixels-footprint (GPL-3.0), Zenodo 16929837 (GPL-3.0), cwindolf/dartsort (no license), Zenodo 16943075 (CC-BY-4.0), SainsburyWellcomeCentre/lasagna (GPL-3.0), jenniferColonell/NP_Ultra_downsample (no license), modeldb:144526 (no license)

Status: code verified, 638 files readable, 2 matches

[12585] doi:10.1016/j.omtn.2025.102726 [paper]

SARS-CoV-2 infection in hiPSC-derived neurons is cathepsin-dependent and causes differential accumulation of HIF1ɑ and phosphorylated tau.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[12586] doi:10.1016/j.omtn.2025.102728 [paper, data]

Targeting AASS alleviates neurotoxicity and improves mitochondrial function in astrocyte models for pyridoxine-dependent epilepsy.

Journal: Molecular therapy. Nucleic acids

Status: code on request, 1 dataset cited

[12587] doi:10.1016/j.omton.2025.201067 [paper, data]

GPC2-CAR T cells have potent preclinical activity against orthotopic medulloblastoma xenografts.

Journal: Molecular therapy. Oncology

Status: code on request, 1 dataset cited

[12588] doi:10.1038/s41467-025-63736-0 [paper, data]

Geometrically-engineered human motor assembloids-on-a-chip for neuromuscular interaction readout and hypoxia-driven disease modeling.

Journal: Nature communications

Status: data only, 1 dataset cited

[12589] doi:10.1038/s41467-025-63746-y [paper, data]

A wireless optogenetic stimulation system for long-term function evaluation of mice forelimb with sub-nerve resolution.

Journal: Nature communications

Status: data only, 1 dataset cited

[12590] doi:10.1038/s41467-025-63747-x [paper, repository]

Forward and reverse genomic screens enhance the understanding of phenotypic variation in a large Chinese rhesus macaque cohort.

Journal: Nature communications

Authors' code: macarthur-lab/gene_lists (no license)

Status: code verified, 24 files readable, 1 match

[12591] doi:10.1038/s41467-025-63752-0 [paper, repository]

Molecular cartography of the human down syndrome and trisomic mouse brain.

Journal: Nature communications

Authors' code: annaminyifeng/Molecular-Cartography-of-DS-Brain (no license), codeocean:4591687 (no license)

Status: code verified, 11 files readable, 4 matches

[12592] doi:10.1038/s41467-025-63771-x [paper, repository]

Efficient and robust temporal processing with neural oscillations modulated spiking neural networks.

Journal: Nature communications

Authors' code: YinsongYan/Rhythm-SNN (MIT)

Status: code verified, 369 files readable, 14 matches

[12593] doi:10.1038/s41467-025-63786-4 [paper, repository]

A predictive approach to enhance time-series forecasting.

Journal: Nature communications

Authors' code: kaggle.com/competitions/seizure-prediction (no license), kaggle.com/competitions/seizure-detection (no license), SkyeGunasekaran/FutureGuidedLearning (MIT)

Status: code verified, 29 files readable, 3 matches

[12594] doi:10.1038/s41467-025-63788-2 [paper, repository]

Atypical cortical feedback underlies failure to process contextual information in the superior colliculus of Scn2a<sup>+/-</sup> autism model mice.

Journal: Nature communications

Authors' code: figshare 28879004 (CC-BY-4.0)

Status: code verified

[12595] doi:10.1038/s41467-025-63804-5 [paper, repository]

A brain-inspired agentic architecture to improve planning with LLMs.

Journal: Nature communications

Authors' code: Shanka123/MAP (MIT), Zenodo 16877941 (MIT)

Status: code verified, 192 files readable

[12596] doi:10.1038/s41467-025-63818-z [paper, repository]

Interleaving asynchronous and synchronous activity in balanced cortical networks with short term synaptic depression.

Journal: Nature communications

Authors' code: brain-math/events_std (MIT)

Status: code verified, 6 files readable

[12597] doi:10.1038/s41467-025-63821-4 [paper, repository]

A doubly stochastic renewal framework for partitioning spiking variability.

Journal: Nature communications

Authors' code: engellab/DSRP (MIT)

Status: code verified, 12 files readable, 3 matches

[12598] doi:10.1038/s41467-025-63823-2 [paper, repository]

Prominent involvement of acetylcholine dynamics in stable olfactory representation across the Drosophila brain.

Journal: Nature communications

Authors' code: jqfan77/Dual_color_fly_brain_imaging_2pSAM_analysis (GPL-3.0)

Status: code verified, 10 files readable

[12599] doi:10.1038/s41467-025-64264-7 [paper, repository]

Hippocampal-cortical interactions in the consolidation of social memory.

Journal: Nature communications

Authors' code: parkgilbong/Minhee_Analysis_Pack (no license), Zenodo 16592402 (MIT), minsmis/social_familarity (MIT)

Status: code verified, 25 files readable, 4 matches

[12600] doi:10.1038/s41538-025-00558-w [paper, repository]

Flexible value coding in the mesolimbic dopamine system depending on internal water and sodium balance.

Journal: NPJ science of food

Authors' code: YuukiUchida/WaterSaltDopamine_hRL (no license)

Status: code verified, 2 files readable, 2 matches

[12601] doi:10.1038/s41551-025-01506-5 [paper, repository]

Brain-heart-eye axis revealed by multi-organ imaging genetics and proteomics.

Journal: Nature biomedical engineering

Authors' code: anbai106/mlni (MIT), bulik/ldsc (GPL-3.0), mrcieu.github.io/twosamplemr (no license), chr1swallace.github.io/coloc (no license)

Status: code verified, 54 files readable, 3 matches

[12602] doi:10.1038/s41597-025-05881-1 [paper, repository]

A Human EEG Dataset for Multisensory Perception and Mental Imagery.

Journal: Scientific data

Authors' code: CECNL/YOTO_You_Only_Think_Once (no license)

Status: code verified, 11 files readable, 1 match

[12603] doi:10.1038/s41598-025-04899-0 [paper, data]

Advanced MRI based Alzheimer's diagnosis through ensemble learning techniques.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12604] doi:10.1038/s41598-025-07069-4 [paper, data]

Enhanced EfficientNet-Extended Multimodal Parkinson's disease classification with Hybrid Particle Swarm and Grey Wolf Optimizer.

Journal: Scientific reports

Status: data only, 2 datasets cited

[12605] doi:10.1038/s41598-025-09114-8 [paper, repository]

Biologically inspired neural network layer with homeostatic regulation and adaptive repair mechanisms.

Journal: Scientific reports

Authors' code: logicsame/bio-logical-self-healing-neural-system (MIT), Zenodo 15839762 (MIT), zalandoresearch/fashion-mnist (MIT)

Status: code verified, 86 files readable, 14 matches

[12606] doi:10.1038/s41598-025-12973-w [paper, data]

Deep transfer learning based feature fusion model with Bonobo optimization algorithm for enhanced brain tumor segmentation and classification through biomedical imaging.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12607] doi:10.1038/s41598-025-14585-w [paper, data]

Attentional tracking reduces cortical alpha oscillations.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12608] doi:10.1038/s41598-025-14619-3 [paper, repository]

Temporal single spike coding for effective transfer learning in spiking neural networks.

Journal: Scientific reports

Authors' code: SRKH/S4NN (GPL-3.0), hamidehmoghadasi/TS4TL (no license)

Status: code verified, 4 files readable, 4 matches

[12609] doi:10.1038/s42003-025-08513-x [paper, repository]

Cognitive and neural mechanisms of mental imagery supporting creative cognition.

Journal: Communications biology

Authors' code: brain-networks/edge-centric_demo (MIT)

Status: code verified, 8 files readable

[12610] doi:10.1038/s42003-025-08782-6 [paper, repository]

Cortical connectivity, local dynamics and stability correlates of global conscious states.

Journal: Communications biology

Authors' code: yundumbledore/NeuroProcImager-Pro (MIT)

Status: code verified, 207 files readable, 11 matches

[12611] doi:10.1038/s42003-025-08792-4 [paper, repository]

Temporal dedifferentiation of neural states with age during naturalistic viewing.

Journal: Communications biology

Authors' code: OSF 4z67t (no license), slugtmeijer (no license)

Status: code verified, 26 files readable, 4 matches

[12612] doi:10.1038/s42003-025-08796-0 [paper, repository]

Alzheimer's disease signatures in the brain transcriptome of Estuarine Dolphins.

Journal: Communications biology

Authors' code: FelixKrueger/TrimGalore (GPL-3.0), Zenodo 7598955 (other-open)

Status: code verified, 33 files readable, 2 matches

[12613] doi:10.1038/s42003-025-08797-z [paper, repository]

Differential modulation of positive and negative prediction errors by stimulus variability in the mouse posterior parietal cortex.

Journal: Communications biology

Authors' code: Zenodo 16813620 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[12614] doi:10.1038/s42003-025-08806-1 [paper, data]

Social memory engram formation impairment in neuroligin-3 R451C knock-in mice is caused by disrupted prefrontal NMDA receptor-dependent potentiation.

Journal: Communications biology

Status: data only, 1 dataset cited

[12615] doi:10.1038/s42003-025-08808-z [paper]

Dynamic developmental signatures of facial expression processing differ by emotion.

Journal: Communications biology

Status: code on request

[12616] doi:10.1038/s42255-025-01367-x [paper, repository]

DDHD2 provides a flux of saturated fatty acids for neuronal energy and function.

Journal: Nature metabolism

Authors' code: bongrita/DDHD2_proteomics (MIT)

Status: code verified, 10 files readable, 9 matches

[12617] doi:10.1073/pnas.2512619122 [paper, data]

Mapping macaque to human cortex with natural scene responses.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[12618] doi:10.1101/2025.09.29.678806 [paper, repository]

Lifespan Trajectories of Asymmetry in White Matter Tracts

Journal: bioRxiv (preprint)

Authors' code: masilab/asymmetry (no license)

Status: dead link

[12619] doi:10.1109/access.2025.3616256 [paper, repository]

Topology Assisted Clustering of Temporal fMRI Brain Networks With Use-Case in Mitigating Non-Neural Multi-Site Variability.

Journal: IEEE access : practical innovations, open solutions

Authors' code: harp-lab/TemporalBrainPH (no license)

Status: code verified, 28 files readable, 2 matches

[12620] doi:10.1177/2689288x251383348 [paper]

Prior Psychiatric Disorder and Post-Traumatic Stress, Depressive and Anxiety Disorder after Traumatic Brain Injury with Glasgow Coma Scale Score 13-15: A TRACK-TBI Study.

Journal: Neurotrauma reports

Status: code on request

[12621] doi:10.1186/s12920-025-02219-z [paper, data]

Exploration and validation of the immune-related genes signatures and potential molecular mechanisms shared between Alzheimer's disease (AD) and Parkinson's disease (PD).

Journal: BMC medical genomics

Status: data only, 1 dataset cited

[12622] doi:10.1186/s40164-025-00713-9 [paper, data]

Brain metastasis-associated cancer fibroblasts drive tumor progression and therapeutic resistance through IL26 and CX3CL1 signaling in non-small-cell lung cancer.

Journal: Experimental hematology & oncology

Status: data only, 1 dataset cited

[12623] doi:10.1242/dmm.052306 [paper, data]

Interleukin-1 regulates myeloid cell trafficking and cerebral blood flow following intracerebral haemorrhage.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[12624] doi:10.3389/fphar.2025.1586372 [paper, repository]

Pre-ICU statin therapy reduces 28-day mortality in sepsis-associated brain dysfunction: a propensity-matched analysis of potential neuroprotective mechanisms.

Journal: Frontiers in pharmacology

Authors' code: MIT-LCP/mimic-iv (MIT)

Status: code verified, 8 files readable

[12625] doi:10.3390/ijms26199557 [paper, repository]

Analysis of Genomic and Transcriptomic Data Revealed Key Genes and Processes in the Development of Major Depressive Disorder.

Journal: International journal of molecular sciences

Authors' code: hakyimlab/MetaXcan (MIT)

Status: code verified, 124 files readable

[12626] doi:10.3390/neurolint17100156 [paper, data]

The Neuroanatomical Correlates of Bladder Filling: An Activation Likelihood Estimation Meta-Analysis of Functional Neuroimaging Studies.

Journal: Neurology international

Status: data only, 1 dataset cited

[12627] doi:10.7554/elife.103676 [paper, repository]

Diverse calcium dynamics underlie place field formation in hippocampal CA1 pyramidal cells.

Journal: eLife

Authors' code: hdl.handle.net/21.15109/arp (no license)

Status: code verified

[12628] doi:10.7554/elife.103959 [paper, repository]

Representation of male features in the female mouse accessory olfactory bulb, and their stability during the estrus cycle.

Journal: eLife

Authors' code: yorambenshaul/state-dependent-processing-cohen-ben-shaul (no license)

Status: code verified, 16 files readable, 2 matches

[12629] doi:10.7554/elife.106621 [paper, repository]

Sparse innervation and local heterogeneity in the vibrissal corticostriatal projection.

Journal: eLife

Authors' code: fr.mathworks.com/matlabcentral/fileexchange (no license)

Status: code found, still to be checked

[12630] doi:10.7554/elife.107298 [paper, repository]

Astrocytic modulation of population encoding in mouse visual cortex via GABA transporter 3 revealed by multiplexed CRISPR/Cas9 gene editing.

Journal: eLife

Authors' code: jihoparko/Park_et_al_2024 (MIT)

Status: code verified, 26 files readable, 4 matches

[12631] doi:10.7554/elife.96402 [paper, repository]

Nonlinear feedback modulation contributes to the optimization of flexible decision-making.

Journal: eLife

Authors' code: xuanyuw/TD-modulation-model (MIT)

Status: code verified, 55 files readable, 5 matches

[12632] doi:10.7554/elife.97884 [paper, repository]

Observational activation of anterior cingulate cortical neurons coordinates hippocampal replay in social learning.

Journal: eLife

Authors' code: wilsonlab/mwsoft64 (no license), DaoyunJiLab/DM2021 (GPL-3.0)

Status: code verified, 249 files readable, 4 matches

Monday, 29 September 2025 (51 papers)

[12633] doi:10.1002/advs.202505535 [paper, data]

Pathogenicity of Mediator Complex Subunit 27 (MED27) in a Neurodevelopmental Disorder with Cerebellar Atrophy.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[12634] doi:10.1002/advs.202507878 [paper, repository]

BROAD-NESS Uncovers Dual-Stream Mechanisms Underlying Predictive Coding in Auditory Memory Networks.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: leonardob92/LBPD-1.0 (GPL-3.0), Zenodo 17048137 (CC-BY-4.0)

Status: code verified, 168 files readable, 9 matches

[12635] doi:10.1002/mrm.70103 [paper]

T<sub>1</sub>-weighted fMRI in mouse visual cortex using an iron oxide nanoparticle contrast agent and UTE imaging at 9.4 T.

Journal: Magnetic resonance in medicine

Status: code on request

[12636] doi:10.1007/s10334-025-01298-4 [paper]

BOLD fMRI at 9.4T with 3D stack-of-spirals readouts.

Journal: Magma (New York, N.Y.)

Status: code on request

[12637] doi:10.1007/s12672-025-03596-8 [paper, data]

Cell division cycle 25 C (CDC25C) mediates cell-cycle progression and immune evasion in glioma.

Journal: Discover oncology

Status: data only, 1 dataset cited

[12638] doi:10.1007/s12672-025-03604-x [paper, data]

Pharmacological inhibition of NMDA receptors reduces migration and viability in triple-negative inflammatory breast cancer cell lines.

Journal: Discover oncology

Status: data only, 1 dataset cited

[12639] doi:10.1016/j.tranon.2025.102549 [paper]

HDAC2 promotes malignant progression by the RBM47/NONO axis in medulloblastoma.

Journal: Translational oncology

Status: data only

[12640] doi:10.1016/j.xhgg.2025.100525 [paper, data]

Bi-allelic variants in BCAT1 impair mitochondrial function and are associated with a candidate neurometabolic disorder.

Journal: HGG advances

Status: code on request, 2 datasets cited

[12641] doi:10.1038/s41398-025-03554-6 [paper, repository]

Neurometabolic predictors of mental effort in the frontal cortex.

Journal: Translational psychiatry

Authors' code: NicolasClairis/physical_and_mental_E_task (GPL-3.0)

Status: code verified, 50 files readable, 2 matches

[12642] doi:10.1038/s41398-025-03563-5 [paper, repository]

Meta-analysis of the brain transcriptomes of multiple genetic mouse models of schizophrenia highlights dysregulation in striatum and thalamus.

Journal: Translational psychiatry

Authors' code: seanken/bulkisoform (no license), StanleyCenter-ShengLab/PerzelMandell_etal_2024 (no license)

Status: code verified, 25 files readable, 8 matches

[12643] doi:10.1038/s41467-025-63219-2 [paper, repository]

Solving the many-electron Schrödinger equation with a transformer-based framework.

Journal: Nature communications

Authors' code: figshare 29483243 (CC-BY-4.0)

Status: code verified

[12644] doi:10.1038/s41467-025-63544-6 [paper, data]

Brain-cervical lymph node crosstalk contributes to brain injury induced by subarachnoid hemorrhage in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[12645] doi:10.1038/s41467-025-63573-1 [paper, repository]

Neuron-reactive KIR<sup>+</sup>CD8<sup>+</sup> T cells display an encephalitogenic transcriptional program in autoimmune encephalitis.

Journal: Nature communications

Authors' code: bdsc-tds/Perriot_Jones_2025 (no license), Zenodo 16812576 (CC-BY-4.0)

Status: code verified, 44 files readable, 7 matches

[12646] doi:10.1038/s41467-025-63583-z [paper, repository]

Dexamethasone-loaded platelet-inspired nanoparticles improve intracortical microelectrode recording performance.

Journal: Nature communications

Authors' code: Shofflab/SPPINDEX (no license), Zenodo 15831800 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

[12647] doi:10.1038/s41467-025-63596-8 [paper, repository]

Dynamic cell fate plasticity and tissue reintegration drive functional adult synovial joint regeneration after complete resection.

Journal: Nature communications

Authors' code: wangzcl/archetypes (BSD-3-Clause), aleixalcacer/archetypes (BSD-3-Clause), mblumenkrantz/whole-joint-regeneration-analysis (no license)

Status: code verified, 89 files readable, 10 matches

[12648] doi:10.1038/s41467-025-63628-3 [paper, repository]

Age-related constraints on the spatial geometry of the brain.

Journal: Nature communications

Authors' code: codeocean:3593979 (no license)

Status: code found, still to be checked

[12649] doi:10.1038/s41467-025-63661-2 [paper, repository]

Motion impact score for detecting spurious brain-behavior associations.

Journal: Nature communications

Authors' code: DosenbachGreene/abcde (no license), DosenbachGreene/shaman (no license), DCAN-Labs/abcd-hcp-pipeline (BSD-3-Clause)

Status: code verified, 73 files readable, 11 matches

[12650] doi:10.1038/s41467-025-64043-4 [paper, data]

Maternal aggression driven by the transient mobilisation of a dormant hormone-sensitive circuit.

Journal: Nature communications

Status: data only, 1 dataset cited

[12651] doi:10.1038/s41537-025-00670-6 [paper, repository]

The shared genetic architecture between schizophrenia and common peripheral organ imaging phenotypes.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: josefin-werme/LAVA (no license)

Status: code verified, 21 files readable, 2 matches

[12652] doi:10.1038/s41598-025-02073-0 [paper, repository]

Revealing gait as a murine biomarker of injury, disease, and age with multivariate statistics and machine learning.

Journal: Scientific reports

Authors' code: luoyuanlab/gait (no license)

Status: empty repository, 1 file readable

[12653] doi:10.1038/s41598-025-17098-8 [paper, repository]

Type-II neural symmetry detection with Lie theory.

Journal: Scientific reports

Authors' code: alexgabel/LiePaper (MIT)

Status: code verified, 25 files readable, 3 matches

[12654] doi:10.1038/s41598-025-17725-4 [paper, data]

An efficient deep learning network for brain stroke detection using salp shuffled shepherded optimization.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12655] doi:10.1038/s41598-025-18007-9 [paper, repository]

Semantic locality-aware biclustering for brain functional network connectivity.

Journal: Scientific reports

Authors' code: A-Rahaman/BrainBiC (no license)

Status: code verified, 7 files readable, 7 matches

[12656] doi:10.1038/s41598-025-18184-7 [paper, repository]

Benchmarking the utility of dry-electrode electroencephalography for clinical trials.

Journal: Scientific reports

Authors' code: python.org (no license), mne.tools/stable/index.html (no license), pingouin-stats.org (no license), eeglab.org (no license), labeling.ucsd.edu/tutorial (no license), statsmodels/statsmodels (BSD-3-Clause)

Status: code verified, 1,412 files readable, 1 match

[12657] doi:10.1038/s41598-025-18329-8 [paper, repository]

Multi-stage fusion of local and global features for few-shot image classification.

Journal: Scientific reports

Authors' code: tristandeleu/pytorch-meta (MIT)

Status: code verified, 97 files readable, 2 matches

[12658] doi:10.1038/s41598-025-18350-x [paper, data]

Clinical application of CNV-seq for diagnosing abnormal brain development in children.

Journal: Scientific reports

Status: data only, 2 datasets cited

[12659] doi:10.1038/s41598-025-18650-2 [paper]

Integrated multi omics and machine learning reveal mitochondrial immunometabolic networks in sepsis associated encephalopathy.

Journal: Scientific reports

Status: data only

[12660] doi:10.1038/s41598-025-18907-w [paper]

Red meat consumption in higher healthy eating index diets is associated with brain health critical nutritional adequacy, and fecal microbial diversity.

Journal: Scientific reports

Status: code on request

[12661] doi:10.1038/s44172-025-00504-4 [paper, data]

Neural spike compression through salient sample extraction and curve fitting dedicated to high-density brain implants.

Journal: Communications engineering

Status: code on request, 3 datasets cited

[12662] doi:10.1038/s44321-025-00307-2 [paper]

Selective inhibition of mitochondrial Kv1.3 prevents and alleviates multiple sclerosis in vivo.

Journal: EMBO molecular medicine

Status: data only

[12663] doi:10.1073/pnas.2500048122 [paper, repository]

Higher-order interactions in neuronal function: From genes to ionic currents in biophysical models.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: AllenInstitute/All-active-Manuscript (BSD-2-Clause), BlueBrain/emodel-generalisation (CC-BY-4.0)

Status: code verified, 207 files readable, 1 match

[12664] doi:10.1162/imag.a.158 [paper, repository]

Deep-learning segmentation of the substantia nigra from multiparametric MRI: Application to Parkinson's disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: lillepeder/snceg (MIT)

Status: code verified, 4 files readable

[12665] doi:10.1162/imag.a.907 [paper, data]

Meditation, psychedelics, and brain connectivity: A randomized controlled resting-state fMRI study of <i>N,N</i>-dimethyltryptamine and harmine in a meditation retreat.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request, 1 dataset cited

[12666] doi:10.1162/nol.a.19 [paper, repository]

Beyond Letters: Optimal Transport as a Model for Sub-Letter Orthographic Processing.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: gin.g-node.org/jackedtaylor/lettersim-ot-rsa (no license)

Status: code verified

[12667] doi:10.1186/s10020-025-01365-5 [paper, data]

Functional characterization of the MED12 p.Arg1138Trp variant in females: implications for neural development and disease mechanism.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 2 datasets cited

[12668] doi:10.1186/s11689-025-09651-3 [paper, repository]

The association between infant EEG aperiodic exponent and the trajectory of restricted and repetitive behaviors for toddlers with and without autism.

Journal: Journal of neurodevelopmental disorders

Authors' code: OSF u3gp4 (no license), OSF 7zf5y (no license)

Status: code verified, 32 files readable, 12 matches

[12669] doi:10.1186/s13040-025-00483-4 [paper, repository]

Cross-regional radiomics: a novel framework for relationship-based feature extraction with validation in Parkinson's disease motor subtyping.

Journal: BioData mining

Authors' code: MahboubeHosseini/parkinson-motor-circuit-classification (MIT)

Status: code verified, 14 files readable, 16 matches

[12670] doi:10.1186/s13073-025-01528-3 [paper, repository]

Distinct patterns of genetic overlap among multimorbidities revealed with trivariate MiXeR.

Journal: Genome medicine

Authors' code: precimed/mix3r (no license), precimed/simu (GPL-3.0), precimed/mixer (GPL-3.0)

Status: code verified, 105 files readable, 2 matches

[12671] doi:10.1371/journal.pcbi.1013544 [paper, repository]

Early visual signatures and benefits of intra-saccadic motion streaks.

Journal: PLoS computational biology

Authors' code: OSF qm5ca (no license), richardschweitzer/simplified_V1 (no license), Zenodo 15837947 (CC-BY-4.0)

Status: code verified, 49 files readable, 17 matches

[12672] doi:10.1371/journal.pgen.1011843 [paper, repository]

Polycomb repressive complexes 1 and 2 independently and dynamically regulate euchromatin during cerebellar neurodevelopment.

Journal: PLoS genetics

Authors' code: FergusonLab/CUT-RUN-pipeline (MIT)

Status: code verified, 8 files readable, 2 matches

[12673] doi:10.1371/journal.pone.0314841 [paper, repository]

Three-dimensional ultrastructural characterization of Drosophila melanogaster hygrosensilla across humidity conditions.

Journal: PloS one

Authors' code: enjinlab/SacculusUltrastructure (CC0-1.0)

Status: code verified, 6 files readable, 7 matches

[12674] doi:10.1371/journal.pone.0332572 [paper, data]

Alzheimer's disease classification using a hybrid deep learning approach with multi-layer U-net segmentation and XAI driven analysis.

Journal: PloS one

Status: data only, 1 dataset cited

[12675] doi:10.1371/journal.pone.0332869 [paper, data]

Structure-aware medical image fusion via mean curvature enhancement in the contourlet domain.

Journal: PloS one

Status: data only, 1 dataset cited

[12676] doi:10.3389/fmed.2025.1660920 [paper, data]

HyReti-Net: hybrid retinal diseases classification and diagnosis network using optical coherence tomography.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[12677] doi:10.3389/fnins.2025.1627497 [paper, repository]

GenCPM: a toolbox for generalized connectome-based predictive modeling.

Journal: Frontiers in neuroscience

Authors' code: BXU69/GenCPM (no license)

Status: code verified, 12 files readable, 5 matches

[12678] doi:10.3390/bioengineering12101049 [paper]

A Machine Learning Approach for Real-Time Detection of Inadequate Sedation Using Non-EEG Physiological Signals.

Journal: Bioengineering (Basel, Switzerland)

Status: code on request

[12679] doi:10.3390/e27101026 [paper, repository]

A Novel Multi-Scale Entropy Approach for EEG-Based Lie Detection with Channel Selection.

Journal: Entropy (Basel, Switzerland)

Authors' code: zyzc75/ME-Lie-Detection (no license)

Status: code verified, 9 files readable

[12680] doi:10.3390/molecules30193921 [paper, repository]

Precision Target Discovery for Migraine: An Integrated GWAS-eQTL-PheWAS Pipeline.

Journal: Molecules (Basel, Switzerland)

Authors' code: chr1swallace/coloc (no license)

Status: code verified, 41 files readable, 4 matches

[12681] doi:10.3390/s25196009 [paper, repository]

Deep Learning-Based Assessment of Brainstem Volume Changes in Spinocerebellar Ataxia Type 2 (SCA2): A Study on Patients and Preclinical Subjects.

Journal: Sensors (Basel, Switzerland)

Authors' code: robbinc91/mipaim_unet (no license)

Status: code verified, 72 files readable, 8 matches

[12682] doi:10.3892/etm.2025.12985 [paper, data]

Pediatric diffuse low-grade glioma with oligodendroglioma-like features: A case report.

Journal: Experimental and therapeutic medicine

Status: data only, 1 dataset cited

[12683] doi:10.4103/nrr.nrr-d-25-00338 [paper, data]

Hedgehog signaling activation rescues hypoxia-induced ferroptosis in human brain organoids.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

Sunday, 28 September 2025 (6 papers)

[12684] doi:10.1093/braincomms/fcaf376 [paper, repository]

High-resolution structural connectivity mediates age-related differences in functional connectivity and fluid cognition.

Journal: Brain communications

Authors' code: OSF ck7nd (no license)

Status: code found, still to be checked

[12685] doi:10.1101/2025.09.26.25336528 [paper, repository]

Breaking the Norm: Population-Scale Deviations of Brain Structure in Depression and Anxiety

Journal: medRxiv (preprint)

Authors' code: wiegertj/DeepNormativeModeling (GPL-3.0)

Status: code verified, 23 files readable, 14 matches

[12686] doi:10.1101/2025.09.26.678648 [paper, repository]

Combinatorial protein barcodes enable self-correcting neuron tracing with nanoscale molecular context

Journal: bioRxiv (preprint)

Authors' code: funkelab/daisy (MIT), e11bio/volara (MIT)

Status: code verified, 114 files readable

[12687] doi:10.1136/bmjopen-2024-092459 [paper, repository]

Dementia-related volumetric assessments in neuroradiology reports: a natural language processing-based study.

Journal: BMJ open

Authors' code: Zenodo 15790492 (CC-BY-4.0), adam-mayers/brain-mri-nlp (no license)

Status: code verified, 16 files readable, 3 matches

[12688] doi:10.3390/diagnostics15192485 [paper, data]

A Robust Semi-Supervised Brain Tumor MRI Classification Network for Data-Constrained Clinical Environments.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[12689] doi:10.3390/ph18101456 [paper, data]

Shentong Zhuyu Decoction Alleviates Neuropathic Pain in Mice by Inhibiting the NMDAR-2B Receptor-Mediated CaMKII/CREB Signaling Pathway in GABAergic Neurons of the Interpeduncular Nucleus.

Journal: Pharmaceuticals (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 27 September 2025 (10 papers)

[12690] doi:10.1007/s00401-025-02939-7 [paper, repository]

In silico purification improves DNA methylation-based classification rates of pediatric low-grade gliomas.

Journal: Acta neuropathologica

Authors' code: livjuergensen/InSilicoPurification (MIT)

Status: code verified, 5 files readable, 4 matches

[12691] doi:10.1016/j.brainresbull.2025.111558 [paper, repository]

Geometry Reduced Order Modeling (GROM) with application to modeling of glymphatic function.

Journal: Brain research bulletin

Authors' code: Erasdna/GROM (MIT)

Status: code verified, 18 files readable, 2 matches

[12692] doi:10.1016/j.isci.2025.113662 [paper, repository]

Statistical olfactory learning in honey bees.

Journal: iScience

Authors' code: mp599/2025_honeybee_statistical_learning (no license)

Status: empty repository, 1 file readable

[12693] doi:10.1016/j.molmet.2025.102258 [paper, data]

Dax1 in AgRP neurons regulates thermogenesis via GR-HDAC3-mediated CRFR1 suppression.

Journal: Molecular metabolism

Status: data only, 1 dataset cited

[12694] doi:10.1016/j.nbd.2025.107128 [paper, data]

Single nucleus RNA sequencing unveils relationship between microglia and endothelial cells in mixed Alzheimer's disease and vascular pathology.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[12695] doi:10.1016/j.neurot.2025.e00759 [paper, data]

Inhibition of microglial glutaminase alleviates chronic stress-induced neurobehavioral and cognitive deficits.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[12696] doi:10.1016/j.xpro.2025.104109 [paper, repository]

Protocol for multiplex whole-mount RNA fluorescence in situ hybridization combined with immunohistochemistry in the mosquito brain.

Journal: STAR protocols

Authors' code: ctucl/AGambiaeHCRdesignNote (no license), Zenodo 16265015 (GPL-3.0), ctucl/AGambiaeHCRdesign (GPL-3.0)

Status: code verified, 16 files readable, 4 matches

[12697] doi:10.1113/jp288183 [paper, repository]

'Mini analysis' misrepresents changes in synaptic properties due to incomplete event detection.

Journal: The Journal of physiology

Authors' code: biosig.sourceforge.net (no license), jakefwatson/miniplace (GPL-3.0)

Status: code verified, 9 files readable, 5 matches

[12698] doi:10.1113/jp288860 [paper, repository]

Reduced osmoresponsiveness in magnocellular neuroendocrine neurones during chronic salt-loading.

Journal: The Journal of physiology

Authors' code: HypoModel/MagnoNeuroDat (no license)

Status: empty repository, 1 file readable

[12699] doi:10.3390/jimaging11100336 [paper, data]

Glioma Grading by Integrating Radiomic Features from Peritumoral Edema in Fused MRI Images and Automated Machine Learning.

Journal: Journal of imaging

Status: data only, 1 dataset cited

Friday, 26 September 2025 (59 papers)

[12700] doi:10.1002/advs.202511856 [paper, repository]

Immunoregulatory Roles of Tumor-Originated Pericytes Identified by Single-Cell Analysis in Glioblastoma.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: theMILOlab/SPATAData (no license)

Status: code verified, 32 files readable

[12701] doi:10.1007/s10548-025-01148-5 [paper, data]

Lag-structure in fMRI across Three Psychiatric Groups: State-dependency and Clinical-behavioral Correlates.

Journal: Brain topography

Status: code on request, 1 dataset cited

[12702] doi:10.1007/s11357-025-01897-y [paper, repository]

Aging-related decline in the liver and brain is accelerated by refined diet consumption.

Journal: GeroScience

Authors' code: najoshi/sabre (MIT)

Status: code verified, 8 files readable

[12703] doi:10.1007/s12671-025-02671-z [paper, repository]

Neurofeedback Training Facilitates Awareness and Enhances Emotional Well-being Associated with Real-World Meditation Practice: A 7-T MRI Study.

Journal: Mindfulness

Authors' code: saampras/melbourne-7t-fmri-neurofeedback-guided-meditation (no license)

Status: code verified, 22 files readable, 11 matches

[12704] doi:10.1007/s12672-025-03491-2 [paper]

Disulfidptosis OXSM serves as a potential prognostic biomarker and correlates with immune infiltrates in glioma.

Journal: Discover oncology

Status: data only

[12705] doi:10.1007/s12672-025-03557-1 [paper, data]

Immunogenic cell death-related macrophage gene model for prognostic prediction in glioblastoma.

Journal: Discover oncology

Status: data only, 1 dataset cited

[12706] doi:10.1016/j.bpsgos.2025.100619 [paper, repository]

Altered Interpersonal Neural Synchronization During Social Interaction After Shared Excluded Experiences in Adolescents With Depression.

Journal: Biological psychiatry global open science

Authors' code: hyw5402/Adolescents_SocialExclusionHyperscanning (no license)

Status: code verified, 1 file readable, 1 match

[12707] doi:10.1016/j.neuron.2025.08.029 [paper, repository]

Within-individual precision mapping of brain networks exclusively using task data.

Journal: Neuron

Authors' code: bucknerlab/PrecisionNetworkMapping (no license), thomasyeolab/cbig (MIT)

Status: code verified, 2,013 files readable, 6 matches

[12708] doi:10.1016/j.omtm.2025.101599 [paper]

Systemic mRNA-LNP administration in fetuses improves survival in a mouse model of spinal muscular atrophy.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[12709] doi:10.1038/s41467-025-63182-y [paper, repository]

The zebra finch auditory cortex reconstructs occluded syllables in conspecific song.

Journal: Nature communications

Authors' code: melizalab/jill (GPL-2.0), Zenodo 15864043 (CC-BY-4.0), Zenodo 15864044 (CC-BY-4.0), melizalab/auditory-restoration (no license)

Status: code verified, 103 files readable, 2 matches

[12710] doi:10.1038/s41467-025-63255-y [paper, data]

Cortical evidence accumulation for visual perception occurs irrespective of reports.

Journal: Nature communications

Status: code on request, 1 dataset cited

[12711] doi:10.1038/s41467-025-63312-6 [paper, repository]

Polygenic architecture of brain structure and function, behaviors, and psychopathologies in children.

Journal: Nature communications

Authors' code: transconnectome/abcd-gps (MIT)

Status: code verified, 14 files readable, 4 matches

[12712] doi:10.1038/s41467-025-63324-2 [paper, repository]

Hypoxic conditioning in Parkinson's disease: randomized controlled multiple N-of-1 trials.

Journal: Nature communications

Authors' code: Federica-Giardina/Talisman (no license)

Status: code verified, 11 files readable

[12713] doi:10.1038/s41467-025-63371-9 [paper, repository]

Spatially-restricted inflammation-induced senescent-like glia in multiple sclerosis and patient-derived organoids.

Journal: Nature communications

Authors' code: AbsintaLab (no license), james-cole/brainageR (LGPL-3.0), Zenodo 16569909 (CC-BY-4.0), absintalab/ms-senescence (no license)

Status: code verified, 101 files readable, 21 matches

[12714] doi:10.1038/s41467-025-63396-0 [paper, data]

VTA monosynaptic connections by local glutamate and GABA neurons and their distinct roles in behavior.

Journal: Nature communications

Status: data only, 2 datasets cited

[12715] doi:10.1038/s41467-025-63429-8 [paper, repository]

Aging in mice alters regionally enriched striatal astrocytes.

Journal: Nature communications

Authors' code: kaylinker/AgingAstrocytes (no license)

Status: empty repository, 1 file readable

[12716] doi:10.1038/s41467-025-63444-9 [paper, data]

Synaptic vesicle endocytosis deficits underlie cognitive dysfunction in mouse models of GBA-linked Parkinson's disease and dementia with Lewy bodies.

Journal: Nature communications

Status: data only, 1 dataset cited

[12717] doi:10.1038/s41467-025-63464-5 [paper, repository]

Gustatory thalamic neurons mediate aversive behaviors.

Journal: Nature communications

Authors' code: Zenodo 16609026 (CC-BY-4.0)

Status: code verified, 1 file readable

[12718] doi:10.1038/s41467-025-63542-8 [paper, data]

Parallel neuronal structural plasticity with memory trace formation in the orbitofrontal cortex.

Journal: Nature communications

Status: data only, 1 dataset cited

[12719] doi:10.1038/s41531-025-01110-z [paper, data]

N-type Ca<sup>2+</sup> channels mediate the stimuli-dependent α-synuclein secretion in mouse striatum.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[12720] doi:10.1038/s41593-025-02066-2 [paper, repository]

Hormonal milieu influences whole-brain structural dynamics across the menstrual cycle using dense sampling in multiple individuals.

Journal: Nature neuroscience

Authors' code: ChristianGaser/menstrual-brain-structural-dynamics (GPL-3.0)

Status: code verified, 12 files readable, 1 match

[12721] doi:10.1038/s41597-025-05769-0 [paper, repository]

Wordsworth: A generative word dataset for comparison of speech representations in humans and neural networks.

Journal: Scientific data

Authors' code: yunkz5115/Wordsworth (no license)

Status: code verified, 4 files readable, 1 match

[12722] doi:10.1038/s41598-025-10517-w [paper, data]

A novel deep neural architecture for efficient and scalable multidomain image classification.

Journal: Scientific reports

Status: data only, 9 datasets cited

[12723] doi:10.1038/s41598-025-16219-7 [paper, repository]

Temporal convolutional transformer for EEG based motor imagery decoding.

Journal: Scientific reports

Authors' code: altaheri/TCFormer (MIT)

Status: code verified, 47 files readable, 14 matches

[12724] doi:10.1038/s41598-025-16794-9 [paper, data]

Low-rank adaptation for edge AI.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12725] doi:10.1038/s41598-025-16903-8 [paper, repository]

Secure and fault tolerant cloud based framework for medical image storage and retrieval in a distributed environment.

Journal: Scientific reports

Authors' code: Zenodo 16890263 (Apache-2.0), amaithirajanarun/sfmedir_source (Apache-2.0)

Status: code verified, 18 files readable, 3 matches

[12726] doi:10.1038/s41598-025-17410-6 [paper, data]

Multi-modal music techniques for synthesizing high-quality audio waveforms from MIDI data.

Journal: Scientific reports

Status: data only, 2 datasets cited

[12727] doi:10.1038/s41598-025-17734-3 [paper, data]

Intramuscular enteric glia persist in Hirschsprung disease and undergo neurogenesis in response to GDNF-NCAM1 signaling.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12728] doi:10.1038/s41598-025-17828-y [paper]

Automated differentiation of acute encephalopathy with biphasic seizures and late reduced diffusion and prolonged febrile seizures in acute phase.

Journal: Scientific reports

Status: code on request

[12729] doi:10.1038/s41598-025-18549-y [paper, data]

A novel 3D indoor localization method integrating deep spatial feature augmentation and attention-based denoising.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12730] doi:10.1038/s41598-025-18631-5 [paper, repository]

Microstructural organization of superior longitudinal fasciculus and cingulum bundle support metacognition driven cognitive offloading.

Journal: Scientific reports

Authors' code: OSF jdnk4 (no license)

Status: code verified, 1 file readable, 1 match

[12731] doi:10.1038/s42003-025-08750-0 [paper, repository]

Brain insulin receptor gene network shapes risk for metabolic disease after early-life stress in women.

Journal: Communications biology

Authors' code: SilveiraLab/ePRS-IR-PFC-STR (no license)

Status: empty repository, 1 file readable

[12732] doi:10.1073/pnas.2520651122 [paper, repository]

Oxytocin and vasopressin enhance social pain empathy via common and distinct of neural expressions, genetic pathways, and networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: zhaolab205/OXT_AVP_effect (no license)

Status: code verified, 18 files readable, 5 matches

[12733] doi:10.1093/braincomms/fcaf374 [paper, repository]

Probabilistic mapping of the antiparkinsonian effects of pallidal deep brain stimulation.

Journal: Brain communications

Authors' code: visualDBSlab/ARENA (no license)

Status: code verified, 309 files readable, 5 matches

[12734] doi:10.1093/braincomms/fcaf375 [paper]

Altered patterns in the prefrontal cortex and limbic system in female patients with neuropathic pain secondary to recurrent median nerve entrapment post carpal tunnel release.

Journal: Brain communications

Status: code on request

[12735] doi:10.1126/sciadv.adx2407 [paper, data]

A sensory and motor neuropathy caused by a genetic variant of <i>NAMPT</i>.

Journal: Science advances

Status: data only, 1 dataset cited

[12736] doi:10.1162/imag.a.154 [paper, data]

Mapping the task-general and task-specific neural correlates of speech production: Meta-analysis and fMRI direct comparisons of category fluency and picture naming.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[12737] doi:10.1162/imag.a.903 [paper, repository]

Spatial distribution of hyperpolarized [1-<sup>13</sup>C]pyruvate MRI and metabolic PET in the human brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 14927726 (CC-BY-4.0)

Status: code verified

[12738] doi:10.1177/21925682251383489 [paper, data]

Intervention of Rutin and Ochnaflavone in the Attenuation of Neuroinflammation and Neuronal Apoptosis in Spinal Cord Injury.

Journal: Global spine journal

Status: data only, 1 dataset cited

[12739] doi:10.1186/s12916-025-04368-5 [paper, data]

The brief resilience scale: a genome-wide association study in the UK Biobank.

Journal: BMC medicine

Status: data only, 2 datasets cited

[12740] doi:10.1186/s12950-025-00464-8 [paper, data]

Loss of tuberous sclerosis complex 2 confers inflammation via dysregulation of nuclear factor kappa-light-chain-enhancer of activated B cells.

Journal: Journal of inflammation (London, England)

Status: data only, 4 datasets cited

[12741] doi:10.1186/s12974-025-03536-x [paper, data]

Dysregulation of cellular metabolism within the gut-brain axis is associated with behavioural changes in chronic intestinal inflammation.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[12742] doi:10.1186/s13072-025-00625-2 [paper, data]

Cohesin regulation of genome organization in mature granule neurons in the mouse cerebellum.

Journal: Epigenetics & chromatin

Status: data only, 1 dataset cited

[12743] doi:10.1212/nxi.0000000000200485 [paper, data]

FCRL5, a B-Cell Marker With Novel Diagnostic and Prognostic Value for Multiple Sclerosis.

Journal: Neurology(R) neuroimmunology & neuroinflammation

Status: data only, 1 dataset cited

[12744] doi:10.1242/bio.062213 [paper, data]

Epithelial fusion is mediated by a partial epithelial-mesenchymal transition.

Journal: Biology open

Status: data only, 1 dataset cited

[12745] doi:10.1371/journal.pone.0329537 [paper, repository]

Supervised spike sorting feasibility of noisy single-electrode extracellular recordings: Systematic study of human C-nociceptors recorded via microneurography.

Journal: PloS one

Authors' code: Digital-C-Fiber/SpikeSortingPipeline (MIT), Zenodo 14552210 (MIT), Microneurography/SpikeSpy (MIT)

Status: code verified, 46 files readable, 15 matches

[12746] doi:10.1371/journal.pone.0332505 [paper, repository]

The experience of mental effort during a continuous performance task: Exploring the influence of task- and person-based factors.

Journal: PloS one

Authors' code: OSF 8xjqc (no license)

Status: empty repository

[12747] doi:10.1371/journal.pone.0332718 [paper, repository]

No clear evidence for a domain-general violation of expectation effect in the pupillary responses of 9- to 10-month-olds.

Journal: PloS one

Authors' code: OSF kwg9r (no license)

Status: code verified, 5 files readable, 1 match

[12748] doi:10.1371/journal.pone.0333205 [paper, data]

Differential involvement of feedback and feedforward control networks across disfluency types in adults who stutter: Evidence from resting state functional connectivity.

Journal: PloS one

Status: data only, 1 dataset cited

[12749] doi:10.21037/tcr-2024-2489 [paper]

Integration analysis of single-cell transcriptome reveals SPP1<sup>+</sup> and TFF3<sup>+</sup> macrophage subsets contributing to the brain metastasis from lung cancer.

Journal: Translational cancer research

Status: data only

[12750] doi:10.3389/fmicb.2025.1654418 [paper, data]

Exploring the gut microbiota-Parkinson's disease link: preliminary insights from metagenomics and Mendelian randomization.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[12751] doi:10.3389/fneur.2025.1646476 [paper, repository]

Application of algorithms based on improved YOLO in MRI image detection of brain tumors.

Journal: Frontiers in neurology

Authors' code: ultralytics/ultralytics (AGPL-3.0)

Status: code verified, 292 files readable, 5 matches

[12752] doi:10.3389/fnins.2025.1645903 [paper, data]

Personalized temporal interference stimulation targeting striatum reduces functional stability and dynamic connectivity variability in the sensorimotor network.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[12753] doi:10.3390/biomedicines13102363 [paper, repository]

Organization and Community Usage of a Neuron Type Circuitry Knowledge Base of the Hippocampal Formation.

Journal: Biomedicines

Authors' code: hippocampome-org/php_v2 (no license)

Status: code verified, 786 files readable, 2 matches

[12754] doi:10.3390/bs15101321 [paper, data]

Investigating Neural Reward Sensitivity in the School Grade Incentive Delay Task and Its Relation to Academic Buoyancy.

Journal: Behavioral sciences (Basel, Switzerland)

Status: data only, 1 dataset cited

[12755] doi:10.3390/clockssleep7040053 [paper, repository]

The Crosstalk Between the Anterior Hypothalamus and the Locus Coeruleus During Wakefulness Is Associated with Low-Frequency Oscillations Power During Sleep.

Journal: Clocks & sleep

Authors' code: gitlab.uliege.be/cyclotronresearchcentre/public/fasst/lc-hypothalamus-connectivity (no license)

Status: code verified, 1 file readable

[12756] doi:10.3390/life15101524 [paper, data]

An Adaptive Transfer Learning Framework for Multimodal Autism Spectrum Disorder Diagnosis.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[12757] doi:10.3724/abbs.2025132 [paper, data]

KDM4A regulates microglial polarization after ischemic stroke by regulating SPINK5 signaling.

Journal: Acta biochimica et biophysica Sinica

Status: data only, 1 dataset cited

[12758] doi:10.7554/elife.100734 [paper, repository]

Spatial frequency adaptation modulates population receptive field sizes.

Journal: eLife

Authors' code: OSF 9kfgx (no license), OSF 2rgsm (no license)

Status: code verified, 95 files readable, 5 matches

Thursday, 25 September 2025 (47 papers, 10 on this page)

[12759] doi:10.1002/ijc.70171 [paper, repository]

Prospective inter-individual analysis of quality-adjusted life years (QALYs) in brain tumor patients: A comprehensive assessment of health preferences.

Journal: International journal of cancer

Authors' code: lhoenikl/QALY-analysis (no license)

Status: code verified, 6 files readable

[12760] doi:10.1007/s00213-025-06902-y [paper, data]

Mu or delta opioid receptor antagonists increase the expression of social conditioned place preference in early adolescent mice.

Journal: Psychopharmacology

Status: data only, 2 datasets cited

[12761] doi:10.1007/s10548-025-01146-7 [paper, data]

EEG Microstates Signatures of rTMS Response Over the lDLPFC: A Band-Specific Analysis.

Journal: Brain topography

Status: data only, 1 dataset cited

[12762] doi:10.1007/s11033-025-11023-y [paper, data]

Role of DENN Domain-Containing Protein 5b (dennd5b) during early embryonic development of zebrafish.

Journal: Molecular biology reports

Status: data only, 1 dataset cited

[12763] doi:10.1016/j.cell.2025.08.038 [paper, data]

Multiscale proteomic modeling reveals protein networks driving Alzheimer's disease pathogenesis.

Journal: Cell

Status: data only, 5 datasets cited

[12764] doi:10.1016/j.ibneur.2025.09.007 [paper]

Serum amino acid levels are associated with brain hypometabolism in patients across the Alzheimer's disease continuum.

Journal: IBRO neuroscience reports

Status: code on request

[12765] doi:10.1016/j.molpha.2025.100076 [paper, repository]

Electrophysiological characterization of the state-dependent inhibition of Kv7.1 and I<sub>Ks</sub> by UCL2077.

Journal: Molecular pharmacology

Authors' code: Zenodo 17448661 (CC-BY-4.0), danielsastrem/molecular-pharmacology-2025 (MIT)

Status: code verified, 12 files readable, 2 matches

[12766] doi:10.1016/j.nbd.2025.107126 [paper, data]

Human iPSC-derived glutamatergic neurons with pathogenic KCNQ2 variants display hyperactive bursting phenotypes.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[12767] doi:10.1016/j.stemcr.2025.102645 [paper]

Probing DNA damage in Rett syndrome neurons uncovers a role for MECP2 regulation of PARP1.

Journal: Stem cell reports

Status: code on request

[12768] doi:10.1021/acsphotonics.5c01192 [paper, repository]

Discerning Amyloid‑β and Tau Pathologies with Learning-Based Quantum Sensing.

Journal: ACS photonics

Authors' code: shruty19/quantumsensing_ad_svm (no license)

Status: code verified, 3 files readable

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