Every paper, by date: page 61

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 61 of 200: 1 September 2025 to 27 August 2025.

Monday, 1 September 2025 (108 papers, 104 on this page)

[13441] doi:10.1002/alz.70733 [paper, repository]

Neuroimaging markers of dementia across race/ethnicity and sex/gender using an intersectional approach within the HABS-HD cohort.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: michelle-caunca/HABSRaceEthGenImg (no license), apps.unthsc.edu/itr/habs-hd (no license)

Status: code verified, 6 files readable, 6 matches

[13442] doi:10.1002/brb3.70795 [paper, repository]

Modulation of Auditory Cortex Activity in Salicylate-Induced Tinnitus Rats via Deep Brain Stimulation of the Inferior Colliculus.

Journal: Brain and behavior

Authors' code: asadpouretal/ECIC-Tinnitus-DBS (MIT)

Status: code verified, 46 files readable, 8 matches

[13443] doi:10.1002/brb3.70850 [paper, data]

KLF7 Blocks MKNK2/HIF-1 Pathway-Mediated M1 Microglia Polarization to Ameliorate Ischemic Stroke-Induced Neurological Injury.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[13444] doi:10.1002/brb3.70857 [paper, data]

Systematic Exploration of Potential Druggable Genes for Ischemic Stroke Employing Genome-Wide Mendelian Randomization Analysis.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[13445] doi:10.1002/brb3.70894 [paper, repository]

Neurostructural Differences Associated With Prodromal Mania Symptoms in Children.

Journal: Brain and behavior

Authors' code: VU-BRAINS-lab/Archer_Mania_Volume (no license)

Status: code verified, 3 files readable

[13446] doi:10.1002/cam4.71218 [paper, data]

Impact of Population Pharmacogenomics on Cisplatin-Induced Neurotoxicities in Testicular Cancer Survivors.

Journal: Cancer medicine

Status: data only, 1 dataset cited

[13447] doi:10.1002/ctm2.70449 [paper]

Molecular architecture of language-related cortical areas revealed by integrative proteomic and connectome analyses.

Journal: Clinical and translational medicine

Status: code on request

[13448] doi:10.1002/dev.70088 [paper, data]

Social Smiling and Laughter Are Linked to Enhanced Functional Brain Connectivity in Young Infants' Default Mode Network.

Journal: Developmental psychobiology

Status: data only, 1 dataset cited

[13449] doi:10.1002/glia.70080 [paper, data]

C9orf72 Repeat Expansion Induces Metabolic Dysfunction in Human iPSC-Derived Microglia and Modulates Glial-Neuronal Crosstalk.

Journal: Glia

Status: data only, 2 datasets cited

[13450] doi:10.1002/hbm.70330 [paper, repository]

A Practical Guide to Identifying Robust Clusters in Neuroimaging Data.

Journal: Human brain mapping

Authors' code: jnakuci/Clustering_Toolbox (no license)

Status: code verified, 4 files readable

[13451] doi:10.1002/hbm.70334 [paper, repository]

Glymphatic, Structural, and Cognitive Changes During Breast Cancer Chemotherapy: A Longitudinal MRI Study.

Journal: Human brain mapping

Authors' code: gbarisano/alps (MIT)

Status: code verified, 3 files readable, 2 matches

[13452] doi:10.1002/hbm.70336 [paper, repository]

Lifespan Tree of Brain Anatomy: Diagnostic Values for Motor and Cognitive Neurodegenerative Diseases.

Journal: Human brain mapping

Authors' code: volBrain/AssemblyNet (other)

Status: code verified, 2 files readable

[13453] doi:10.1002/hbm.70337 [paper, repository]

Voxel Volume Overlap: Voxel-Size Sensitive Indicators of Subject Motion in Functional MRI.

Journal: Human brain mapping

Authors' code: medizin.uni-tuebingen.de/de/das-klinikum (no license)

Status: code verified

[13454] doi:10.1002/hipo.70025 [paper, repository]

Impact of Dendritic Spine Loss on Excitability of Hippocampal CA1 Pyramidal Neurons: A Computational Study of Early Alzheimer Disease.

Journal: Hippocampus

Authors' code: MasurkarLEADS/Spine-loss-mediated-EPSP-boosting (no license)

Status: code verified, 4 files readable

[13455] doi:10.1002/hipo.70027 [paper, repository]

Developing an Anatomically Valid Segmentation Protocol for Anterior Regions of the Medial Temporal Lobe for Neurodegenerative Diseases.

Journal: Hippocampus

Authors' code: pyushkevich/histoannot (GPL-3.0)

Status: code verified, 55 files readable

[13456] doi:10.1002/hipo.70030 [paper, repository]

Combinative Protein Expression of Immediate Early Genes c-Fos, Arc, and Npas4 Along Aversive and Appetitive Experience-Related Neural Networks.

Journal: Hippocampus

Authors' code: HisayukiOsanai/CellDetection (no license)

Status: code verified, 19 files readable, 3 matches

[13457] doi:10.1002/hipo.70031 [paper]

Inferior and Middle Longitudinal Fasciculus and Fornix Support Allocentric Representation.

Journal: Hippocampus

Status: code on request

[13458] doi:10.1002/mds.70025 [paper, repository]

Functional Magnetic Resonance Imaging (fMRI) Signatures of Progression and Phenoconversion in Prodromal Synucleinopathies.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: lachychurchill/coupling_integration (no license), sites.google.com/site/bctnet (no license), netneurolab/hansen_receptors (CC-BY-NC-SA-4.0)

Status: code verified, 19 files readable, 2 matches

[13459] doi:10.1002/pro.70271 [paper, repository]

A multi-pore model of the blood-brain barrier tight junction strands recapitulates the permeability features of wild-type and mutant claudin-5.

Journal: Protein science : a publication of the Protein Society

Authors' code: membrane.urmc.rochester.edu/content/wham (no license)

Status: code verified

[13460] doi:10.1007/s11356-025-37141-5 [paper]

Long non-coding RNAs potentially suppressive for brain perivascular astrogliosis induced by environmental ultrafine particulate matter.

Journal: Environmental science and pollution research international

Status: code on request

[13461] doi:10.1016/j.ibneur.2025.08.025 [paper]

Potential neurophysiological mechanisms of intermittent theta-burst stimulation to the left prefrontal cortex for post-stroke unilateral neglect: An exploratory transcranial magnetic stimulation - electroencephalography study.

Journal: IBRO neuroscience reports

Status: code on request

[13462] doi:10.1016/j.isci.2025.113458 [paper, repository]

Cerebellar white matter development is regulated by fractalkine-dependent microglia phagocytosis of oligodendrocyte progenitor cells.

Journal: iScience

Authors' code: HarrisonAllen (no license), jackslate45/MyelTracer (no license)

Status: code verified, 2 files readable, 1 match

[13463] doi:10.1016/j.isci.2025.113465 [paper, data]

Toward biomimetic optogenetics: Drug-free activation of acute opiate reward.

Journal: iScience

Status: code on request, 1 dataset cited

[13464] doi:10.1016/j.stemcr.2025.102630 [paper]

The KAP1 chromatin regulator and Paupar long non-coding RNA control subventricular zone neural stem cell maintenance and neurogenesis.

Journal: Stem cell reports

Status: code on request

[13465] doi:10.1016/j.stemcr.2025.102636 [paper]

Ectopic recruitment of neuroblasts in striatal myelin bundles and nucleus accumbens following AraC chemical lesion.

Journal: Stem cell reports

Status: code on request

[13466] doi:10.1017/s0033291725101566 [paper]

Impaired emotional memory dissipation in insomnia disorder.

Journal: Psychological medicine

Status: code on request

[13467] doi:10.1021/acs.jcim.5c01091 [paper, repository]

Prediction of Activity and Selectivity Profiles of Sigma Receptor Ligands Using Machine Learning Approaches.

Journal: Journal of chemical information and modeling

Authors' code: lisa-lombardo/SRs_ML-based_workflows (MIT)

Status: code verified, 31 files readable, 11 matches

[13468] doi:10.1038/s41467-025-62840-5 [paper, repository]

Chronic social defeat stress induces meningeal neutrophilia via type I interferon signaling in male mice.

Journal: Nature communications

Authors' code: Zenodo 15774364 (CC-BY-4.0), Zenodo 15775084 (CC-BY-4.0), staceykigar/meningeal_neut (no license)

Status: code verified, 27 files readable, 7 matches

[13469] doi:10.1038/s41598-025-14942-9 [paper]

Neurons ensheathed by perineuronal nets are prone to hyperphosphorylation of tau protein in the hibernating Syrian hamster brain.

Journal: Scientific reports

Status: code on request

[13470] doi:10.1038/s41598-025-15721-2 [paper, data]

Uncovering novel functions of NUF2 in glioblastoma and MRI-based expression prediction.

Journal: Scientific reports

Status: data only, 1 dataset cited

[13471] doi:10.1038/s42003-025-08683-8 [paper, repository]

Single-cell profiling of H3K4me1-H3K27me3 revealed bivalent regulation of abnormal neuronal development caused by prenatal e-cigarette vaporing.

Journal: Communications biology

Authors' code: cxzhu/Paired-Tag (MIT), satijalab/seurat (other), stuart-lab/signac (other)

Status: code verified, 226 files readable, 7 matches

[13472] doi:10.1038/s42003-025-08774-6 [paper, repository]

Anatomical insights into the superior longitudinal system from integrative in- vivo and ex-vivo mapping.

Journal: Communications biology

Authors' code: scilus/scilpy (MIT), Zenodo 11192915 (CC-BY-4.0), minilabus/bradiphopy (no license)

Status: code verified, 631 files readable, 5 matches

[13473] doi:10.1038/s43587-025-00950-x [paper, data]

REV-ERBα regulates brain NAD<sup>+</sup> levels and tauopathy via an NFIL3-CD38 axis.

Journal: Nature aging

Status: data only, 1 dataset cited

[13474] doi:10.1080/19490976.2025.2551104 [paper, data]

Synbiotic intervention reverses alcohol drinking-induced cognitive deficits in adolescent male mice by modulating the microbiota-gut-brain axis.

Journal: Gut microbes

Status: data only, 1 dataset cited

[13475] doi:10.1093/bib/bbaf460 [paper, repository]

Transfer learning reveals the mediating mechanisms of cross-ethnic lipid metabolic pathways in the association between APOE gene and Alzheimer's disease.

Journal: Briefings in bioinformatics

Authors' code: PanLululu/TransHDM (no license)

Status: code verified, 14 files readable, 1 match

[13476] doi:10.1093/brain/awaf032 [paper, data]

Multiomic analyses direct hypotheses for Creutzfeldt-Jakob disease risk genes.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[13477] doi:10.1093/brain/awaf109 [paper, data]

ADAT3 variants disrupt the activity of the ADAT tRNA deaminase complex and impair neuronal migration.

Journal: Brain : a journal of neurology

Status: data only, 2 datasets cited

[13478] doi:10.1093/brain/awaf161 [paper, data]

Sleep, pericyte subtypes and cognitive decline in adults with and without Alzheimer's disease.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[13479] doi:10.1093/brain/awaf163 [paper, data]

Disruption of DNA methylation underpins the neuroinflammation induced by targeted CNS radiotherapy.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[13480] doi:10.1093/braincomms/fcaf279 [paper, data]

A passive and objective measure of recognition memory in mild cognitive impairment using Fastball memory assessment.

Journal: Brain communications

Status: data only, 1 dataset cited

[13481] doi:10.1093/cercor/bhaf219 [paper, repository]

Neural variability in the default mode network compresses with increasing belief precision during Bayesian inference.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: LNDG/Skowron_etal_2023 (no license)

Status: code verified, 94 files readable, 11 matches

[13482] doi:10.1093/cercor/bhaf254 [paper, repository]

The role of etiology in the identification of clinical markers of consciousness: comparing EEG alpha power, complexity, and spectral exponent.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: BIAPT/Markers (no license)

Status: code verified, 3 files readable, 1 match

[13483] doi:10.1093/cercor/bhaf258 [paper, repository]

Tempo-dependent selective enhancement of neural responses at the beat frequency can be mimicked by both an oscillator and an evoked model.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF ghp94 (no license)

Status: code verified, 1 file readable, 1 match

[13484] doi:10.1093/cercor/bhaf270 [paper, data]

Extrastriate activity reflects sensorimotor-induced bias in estimating number of visual humans.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[13485] doi:10.1093/function/zqaf035 [paper, repository]

Degeneracy Explains Diversity in Interneuronal Regulation of Pattern Separation in Heterogeneous Dentate Gyrus Networks.

Journal: Function (Oxford, England)

Authors' code: Zenodo 16757590 (CC-BY-4.0)

Status: code verified

[13486] doi:10.1093/gbe/evaf187 [paper, repository]

Under the Shadow: Old-biased Genes Are Subject to Weak Purifying Selection at Both the Tissue- and Cell Type-Specific Levels.

Journal: Genome biology and evolution

Authors' code: NisanYildiz/selection-shadow (no license)

Status: code verified, 46 files readable, 20 matches

[13487] doi:10.1093/icb/icaf100 [paper, repository]

Shedding Light on Patterns of Unconventional Expression of Opsin Genes in Hydra vulgaris.

Journal: Integrative and comparative biology

Authors' code: cejuliano/hydra_single_cell (no license)

Status: code verified, 22 files readable, 7 matches

[13488] doi:10.1093/molbev/msaf189 [paper, repository]

A General Principle of Neuronal Evolution Reveals a Human-Accelerated Neuron Type Potentially Underlying the High Prevalence of Autism in Humans.

Journal: Molecular biology and evolution

Authors' code: alleninstitute/great_ape_mtg (BSD-2-Clause), astarr97/Cell_Type_Evolution (MIT)

Status: code verified, 74 files readable, 13 matches

[13489] doi:10.1093/molbev/msaf208 [paper, repository]

Influence of Gonadal and Chromosomal Sex on the Brain Transcriptome in a Mouse Species with Natural Sex Reversal.

Journal: Molecular biology and evolution

Authors' code: encode-dcc/kentutils (no license), Zenodo 14424346 (CC-BY-4.0)

Status: code verified, 2,002 files readable, 7 matches

[13490] doi:10.1093/nar/gkaf804 [paper, repository]

Dynamic allelic expression in mouse mammary glands across the adult developmental cycle.

Journal: Nucleic acids research

Authors' code: Zenodo 16356914 (CC-BY-4.0), Zenodo 16356751 (CC-BY-4.0), tavareshugo/publication_hanin2025_mammaryglandallelicexpression (no license), afs-lab/allele_specific_rnaseq_workflow (no license)

Status: code verified, 60 files readable, 9 matches

[13491] doi:10.1093/nar/gkaf920 [paper, repository]

RNA/DNA-binding protein TDP43 regulates DNA mismatch repair genes with implications for genome stability.

Journal: Nucleic acids research

Authors' code: Zenodo 7874703 (CC-BY-4.0), Zenodo 16810772 (CC-BY-4.0), Zenodo 16810790 (CC-BY-4.0), abacolla/ttest (no license), abacolla/linearregression (no license)

Status: code verified, 17 files readable, 2 matches

[13492] doi:10.1093/nc/niaf024 [paper, data]

Decrease and recovery of integrated information Φ during anesthesia and sleep on human functional magnetic resonance imaging.

Journal: Neuroscience of consciousness

Status: data only, 2 datasets cited

[13493] doi:10.1093/neuonc/noaf028 [paper, data]

IRS2 as a driver of brain metastasis in colorectal cancer: A potential target for novel therapeutic strategies.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[13494] doi:10.1093/neuonc/noaf085 [paper, data]

SOX2 commands LIM homeobox transcription factors in choroid plexus development and tumorigenesis.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[13495] doi:10.1093/sleep/zsaf117 [paper, repository]

Individual differences in medial temporal lobe functional network architecture predict the capacity for sleep-related consolidation of emotional memories in older adults.

Journal: Sleep

Authors' code: mgchappelfarley/Chappel-Farley_2025_Sleep-NetworkArchitectureSleepConsolidation (MIT)

Status: code verified, 7 files readable, 7 matches

[13496] doi:10.1093/toxsci/kfaf076 [paper, data]

The pyrethroid insecticide deltamethrin disrupts neuropeptide and monoamine signaling pathways in the gastrointestinal tract.

Journal: Toxicological sciences : an official journal of the Society of Toxicology

Status: data only, 2 datasets cited

[13497] doi:10.1097/md.0000000000044416 [paper, data]

Novel insights into the relationship between glaucoma and brain diseases from the genetic to diseases levels: A cross-sectional study.

Journal: Medicine

Status: data only, 1 dataset cited

[13498] doi:10.1101/2025.08.31.673392 [paper]

Dorsomedial prefrontal cortex links abstract planning to motor execution

Journal: bioRxiv (preprint)

Status: code on request

[13499] doi:10.1101/lm.054077.124 [paper, repository]

Maintenance of memory by negative feedback of synaptic protein elimination: modeling KIBRA-PKMζ dynamics in LTP.

Journal: Learning & memory (Cold Spring Harbor, N.Y.)

Authors' code: HarelShouval/Maintenance_negative_feedback_2025 (no license)

Status: code verified, 21 files readable

[13500] doi:10.1111/acel.70206 [paper, data]

Normal Ageing Impacts the Extent and Diversity of Neural Plasticity Induced in the Mouse Brain With Repetitive Transcranial Magnetic Stimulation.

Journal: Aging cell

Status: data only, 1 dataset cited

[13501] doi:10.1111/acel.70208 [paper, data]

Association Between Plasma Metabolomic Profile and Machine Learning-Based Brain Age.

Journal: Aging cell

Status: data only, 1 dataset cited

[13502] doi:10.1111/apha.70085 [paper, data]

NMDA-Type Glutamate Receptor Activation Promotes Ischemic Arrhythmias by Targeting the AKT1-TBX3-Nav1.5 Axis.

Journal: Acta physiologica (Oxford, England)

Status: data only, 1 dataset cited

[13503] doi:10.1111/cns.70578 [paper, data]

Endothelin-Converting Enzyme-Like 1 Regulated by LIF Contributes to Chronic Constriction Injury-Induced Neuropathic Pain in Mice.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[13504] doi:10.1111/cns.70584 [paper, repository]

A Transformer-Based Framework With Data Augmentation for Robust Seizure Detection Across Invasive and Noninvasive Neural Recordings.

Journal: CNS neuroscience & therapeutics

Authors' code: nudtzjy/epilepsy (no license)

Status: code verified, 7 files readable, 1 match

[13505] doi:10.1111/cns.70608 [paper, data]

Gut Microbiota-Bile Acid-Brain Axis and TGR5-ERK1/2 Signaling Mediate ADT-Induced Cognitive Impairment.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[13506] doi:10.1111/cns.70609 [paper, data]

Network Pharmacology-Based and Experimental Validation Elucidate the Target Mechanism of Vinorine in Ameliorating Secondary Brain Injury After Intracerebral Hemorrhage.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[13507] doi:10.1111/desc.70042 [paper, repository]

Developmental Changes in Nonsymbolic and Symbolic Fractions Processing: A Cross-Sectional fMRI Study.

Journal: Developmental science

Authors' code: OSF r3f7g (no license)

Status: code verified, 1 file readable

[13508] doi:10.1111/ejn.70230 [paper]

Frequency Coding of Multisensory Integration in the Local Field Potentials of the Medial Pulvinar.

Journal: The European journal of neuroscience

Status: code on request

[13509] doi:10.1111/ejn.70239 [paper, data]

Engrams Formed in Virtual Reality Exhibit Reduced Familiarity Upon Retrieval: Electrophysiological Correlates of Source Memory Retrieval Indicate Modality-Dependent Differences in Recognition Memory.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[13510] doi:10.1111/ejn.70247 [paper, data]

Rhythmic Fluctuations in Tactile Attention.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[13511] doi:10.1111/ejn.70252 [paper, repository]

Directionality of Interpersonal Neural Influence in Functional Near-Infrared Spectroscopy Hyperscanning: Feasibility of Information-Theoretic Causality Analysis in Motor Tasks.

Journal: The European journal of neuroscience

Authors' code: OSF n4jqc (no license)

Status: code verified, 1 file readable

[13512] doi:10.1111/ejn.70260 [paper, data]

Involvement of Perimovement Neural Beta-Oscillations in Strategic Aiming for Motor Adaptation.

Journal: The European journal of neuroscience

Status: data only, 3 datasets cited

[13513] doi:10.1111/ejn.70262 [paper, data]

Task Relevance Modulates Somatosensory Awareness Depending on Stimulus Intensity.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[13514] doi:10.1111/jcmm.70814 [paper]

Regional Transcriptomic Architecture of Glioblastoma Reveals NUCB2 as a Key Orchestrator of Tumour Aggression and Immune Dysfunction.

Journal: Journal of cellular and molecular medicine

Status: code on request

[13515] doi:10.1111/jnc.70212 [paper, repository]

Presynaptic ATP Decreases During Physiological-Like Activity in Neurons Tuned for High-Frequency Transmission.

Journal: Journal of neurochemistry

Authors' code: t-hofmann/resampler (BSD-2-Clause)

Status: code verified, 6 files readable

[13516] doi:10.1111/jon.70085 [paper, repository]

A Novel Convolutional Neural Network for Automated Multiple Sclerosis Brain Lesion Segmentation.

Journal: Journal of neuroimaging : official journal of the American Society of Neuroimaging

Authors' code: huggingface.co/spaces/francescolr/flames (CC-BY-4.0)

Status: code verified, 2 files readable, 2 matches

[13517] doi:10.1111/psyp.70134 [paper, data]

Sensory Attenuation of Auditory P2 Responses is Modulated by the Sense of Action Timing Control.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[13518] doi:10.1111/psyp.70142 [paper, repository]

Altered Reward Processing in Obsessive-Compulsive Disorder: Insights From Active and Observational Learning.

Journal: Psychophysiology

Authors' code: OSF a6uzm (no license)

Status: code verified, 25 files readable, 16 matches

[13519] doi:10.1111/psyp.70146 [paper]

CT-Optimal Stimulation Modulates Somatosensory Processing.

Journal: Psychophysiology

Status: code on request

[13520] doi:10.1111/psyp.70148 [paper, data]

The Dynamic Management of Working Memory Is Supported by Aperiodic Neural Activity.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[13521] doi:10.1111/sms.70122 [paper, data]

A New Incremental Cycling Cognitive-Motor Dual-Task Test to Assess Simultaneous Sustained Attention and Neuromuscular Fatigue in Trained Athletes.

Journal: Scandinavian journal of medicine & science in sports

Status: data only, 1 dataset cited

[13522] doi:10.1111/wrr.70079 [paper, data]

Traumatic Brain Injury Induces Early Barrier Protective Responses in Incisional Skin Wounds Accelerating Cutaneous Wound Healing.

Journal: Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society

Status: data only, 1 dataset cited

[13523] doi:10.1117/1.jmi.12.5.055002 [paper, repository]

DABS-MS: deep atlas-based segmentation using the Mumford-Shah functional.

Journal: Journal of medical imaging (Bellingham, Wash.)

Authors' code: hgmason/DABS-MS (no license)

Status: code verified, 17 files readable, 4 matches

[13524] doi:10.1158/1078-0432.ccr-25-0244 [paper, repository]

Preclinical Modeling of Navtemadlin Pharmacokinetics, Pharmacodynamics, and Efficacy in IDH-Wild-type Glioblastoma.

Journal: Clinical cancer research : an official journal of the American Association for Cancer Research

Authors' code: ome/bioformats (GPL-2.0), gbaquer/SpatialOmicsGBM (MIT), Zenodo 14720361 (CC-BY-4.0)

Status: code verified, 712 files readable, 2 matches

[13525] doi:10.1167/iovs.66.12.25 [paper, repository]

Inner Limiting Membrane Peel Extends In Vivo Calcium Imaging of Retinal Ganglion Cell Activity Beyond the Fovea in Non-Human Primate.

Journal: Investigative ophthalmology & visual science

Authors' code: OSF dwck8 (no license)

Status: code verified, 35 files readable, 5 matches

[13526] doi:10.1167/jov.25.11.3 [paper, repository]

The precision of attention controls attraction of population receptive fields.

Journal: Journal of vision

Authors' code: gjheij/linescanning (MIT), Zenodo 10201022 (CC-BY-4.0)

Status: code verified, 69 files readable, 8 matches

[13527] doi:10.1167/tvst.14.9.27 [paper, repository]

Sustained Neurotrophic Factor Co-Treatment Enhances Donor and Host Retinal Ganglion Cell Survival in Mice.

Journal: Translational vision science & technology

Authors' code: mcrewcow/baranovlab (AGPL-3.0)

Status: code verified, 10 files readable, 1 match

[13528] doi:10.1176/appi.ajp.20240512 [paper, data]

Reduced Brain Iron and Striatal Hyperdopaminergia in Schizophrenia: A Quantitative Susceptibility Mapping MRI and PET Study.

Journal: The American journal of psychiatry

Status: data only, 1 dataset cited

[13529] doi:10.1186/s11671-025-04338-z [paper, data]

Automatic design and optimization of MRI-based neurochemical sensors via reinforcement learning.

Journal: Discover nano

Status: data only, 1 dataset cited

[13530] doi:10.1186/s12866-025-04181-3 [paper, data]

Esketamine alleviates depressive-like behavior in mice via modulation of the microbiota-gut-brain axis and amino acid metabolism.

Journal: BMC microbiology

Status: data only, 1 dataset cited

[13531] doi:10.1186/s12883-025-04378-z [paper, data]

Long-read sequencing identifies ATXN3 repeat expansions, and transcriptomics reveals disease progression biomarkers and druggable targets for spinocerebellar ataxia type 3.

Journal: BMC neurology

Status: data only, 1 dataset cited

[13532] doi:10.1186/s42494-025-00238-y [paper, data]

A hybrid metaheuristic framework for epileptic seizure detection in healthcare decision support systems.

Journal: Acta epileptologica

Status: data only, 2 datasets cited

[13533] doi:10.2147/jpr.s532016 [paper, data]

Identification of Common Genes for Neuropathic Pain and Parkinson's Disease Based on Bioinformatics Analysis and Their Potential Value in the Diagnosis of Neuropathic Pain.

Journal: Journal of pain research

Status: data only, 1 dataset cited

[13534] doi:10.21873/cgp.20537 [paper, data]

Identification of <i>CXCL8, IL1A</i>, and <i>IL1B</i> as Hub Genes of Therapeutic Resistance in Glioblastoma Multiforme <i>via</i> Bioinformatics Analysis.

Journal: Cancer genomics & proteomics

Status: data only, 1 dataset cited

[13535] doi:10.3389/fncel.2025.1603657 [paper, repository]

APOE genotype-dependent differences in human astrocytic energy metabolism.

Journal: Frontiers in cellular neuroscience

Authors' code: einlabzurich/flimanalysis (no license)

Status: code verified, 859 files readable

[13536] doi:10.3389/fncom.2025.1515194 [paper, repository]

Quantitative prediction of intracellular dynamics and synaptic currents in a small neural circuit.

Journal: Frontiers in computational neuroscience

Authors' code: thiagoburghi/rmm (MIT)

Status: code verified, 26 files readable, 8 matches

[13537] doi:10.3389/fnins.2025.1636787 [paper]

NETSseq reveals inflammatory and aging mechanisms in distinct cell types, driving cerebellar decline in ataxia telangiectasia.

Journal: Frontiers in neuroscience

Status: data only

[13538] doi:10.3389/fpsyt.2025.1647240 [paper, repository]

Depression-associated reductions in putaminal volume are accompanied by a shift from matrix-like to striosome-like structural connectivity.

Journal: Frontiers in psychiatry

Authors' code: jeff-waugh/Striatal-Connectivity-based-Parcellation (no license)

Status: code verified, 17 files readable, 3 matches

[13539] doi:10.3390/brainsci15090953 [paper, data]

Gray and White Matter Networks Predict Mindfulness and Mind Wandering Traits: A Data Fusion Machine Learning Approach.

Journal: Brain sciences

Status: data only, 1 dataset cited

[13540] doi:10.3390/brainsci15090954 [paper, repository]

Interpretable Disorder Signatures: Probing Neural Latent Spaces for Schizophrenia, Alzheimer's, and Autism Stratification.

Journal: Brain sciences

Authors' code: zafariqballevi2/NeuroLatentSignatures (no license)

Status: code verified, 9 files readable, 9 matches

[13541] doi:10.3390/cells14171361 [paper, repository]

Ago2-Mediated Recruitment of HP1a on Transposable Elements in <i>Drosophila</i> Brain.

Journal: Cells

Authors' code: bergmanlab/drosophila-transposons (CC0-1.0), LARG-IMG/Dm_brain_AGO2_2025 (no license)

Status: code verified, 40 files readable, 2 matches

[13542] doi:10.4252/wjsc.v17.i9.110663 [paper]

Combined mesenchymal and neural stem cell therapy enhances neurological recovery in cerebral infarction.

Journal: World journal of stem cells

Status: code on request

[13543] doi:10.4292/wjgpt.v16.i3.109046 [paper]

Electroacupuncture alleviates symptoms and identifies a potential microbial biomarker in patients with constipation-predominant irritable bowel syndrome.

Journal: World journal of gastrointestinal pharmacology and therapeutics

Status: code on request

[13544] doi:10.7554/elife.102840 [paper, repository]

Automatic and accurate reconstruction of long-range axonal projections of single-neuron in mouse brain.

Journal: eLife

Authors' code: FateUBW0227/Seg_Net (MIT)

Status: code verified, 26 files readable

Sunday, 31 August 2025 (3 papers)

[13545] doi:10.1080/19490976.2025.2551879 [paper, repository]

Early-life gut microbiome maturity regulates blood-brain barrier and cognitive development.

Journal: Gut microbes

Authors' code: Zenodo 16897951 (CC-BY-4.0)

Status: code verified, 1 file readable, 13 matches

[13546] doi:10.3390/biomedicines13092133 [paper, data]

CX3CR1-TLR4 Axis as a Shared Neuroimmune Target in COVID-19 and Epilepsy: Integrative Transcriptomics and Gabapentin Repositioning.

Journal: Biomedicines

Status: data only, 1 dataset cited

[13547] doi:10.3390/reports8030160 [paper]

Investigating the Impact of Presentation Format on Reading Ability in Posterior Cortical Atrophy: A Case Study.

Journal: Reports (MDPI)

Status: code on request

Saturday, 30 August 2025 (18 papers)

[13548] doi:10.1002/advs.202503082 [paper, data]

FOXQ1 Regulates Brain Endothelial Mitochondrial Function by Orchestrating Calcium Signaling and Cristae Morphology.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[13549] doi:10.1016/j.bandl.2025.105637 [paper, repository]

Initial evidence of altered functional network connectivity in children with developmental language disorder.

Journal: Brain and language

Authors' code: yetianmed/subcortex (MIT), OSF r56s7 (no license)

Status: code verified, 46 files readable

[13550] doi:10.1016/j.celrep.2025.116109 [paper, data]

Amyloid-β-driven Alzheimer's disease reshapes the colonic immune system in mice.

Journal: Cell reports

Status: code on request, 1 dataset cited

[13551] doi:10.1016/j.nicl.2025.103875 [paper, data]

Mapping the path to degeneration: How lesion location predicts post-stroke cerebellar atrophy.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[13552] doi:10.1038/s41380-025-03150-6 [paper, repository]

Dopamine D2 receptor modulation of insulin receptor signaling in the central amygdala: implications for compulsive-like eating behavior.

Journal: Molecular psychiatry

Authors' code: bobobo90/Ja-HyunBaikLab (no license)

Status: code verified, 3 files readable

[13553] doi:10.1038/s41398-025-03515-z [paper]

Heightened effective connectivity of DLPFC-mPFC and DLPFC-ACC circuits in major depressive disorder with suicidal ideation: evidence from a TMS-EEG study.

Journal: Translational psychiatry

Status: code on request

[13554] doi:10.1038/s41398-025-03540-y [paper, repository]

Characterizing replicability in the clustering structure of brain morphology in autism, attention-deficit/hyperactivity disorder, and obsessive compulsive disorder.

Journal: Translational psychiatry

Authors' code: braincode.ca (no license), KamranNiroomand/ClusteringAnalysisStudy (no license)

Status: code verified, 4 files readable

[13555] doi:10.1038/s41420-025-02721-4 [paper, data]

SPANXB1 drives brain metastasis in breast cancer via MMP1 regulation: potential therapeutic insights with metformin.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[13556] doi:10.1038/s41467-025-63279-4 [paper, data]

Metformin alters mitochondria-related metabolism and enhances human oligodendrocyte function.

Journal: Nature communications

Status: data only, 1 dataset cited

[13557] doi:10.1038/s41531-025-01114-9 [paper, data]

Elevated hexosylceramides in Parkinson's disease cause gene upregulations in neurons mimicking responses to pathogens.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[13558] doi:10.1038/s41598-025-17220-w [paper, data]

Segmentation-enhanced approach for emotion detection from EEG signals using the fuzzy C-mean and SVM.

Journal: Scientific reports

Status: data only, 2 datasets cited

[13559] doi:10.1038/s41598-025-17256-y [paper, data]

A model for epileptic EEG detection and recognition based on Multi-Attention mechanism and Spatiotemporal.

Journal: Scientific reports

Status: data only, 2 datasets cited

[13560] doi:10.1038/s42003-025-08557-z [paper, repository]

Gesture encoding in human left precentral gyrus neuronal ensembles.

Journal: Communications biology

Authors' code: cvargasi/GestureEncoding (no license)

Status: code verified, 29 files readable, 3 matches

[13561] doi:10.1038/s42003-025-08780-8 [paper, repository]

Fronto-motor circuits linked to effort-based decision-making and apathy in healthy subjects.

Journal: Communications biology

Authors' code: OSF a59mt (no license)

Status: code verified, 2 files readable, 2 matches

[13562] doi:10.1186/s40001-025-03087-0 [paper]

Mechanisms of IGF1R signaling in type 2 diabetes-related neurodegeneration and therapeutic implications of exercise.

Journal: European journal of medical research

Status: data only

[13563] doi:10.3390/cancers17172853 [paper, data]

Explainable Deep Ensemble Meta-Learning Framework for Brain Tumor Classification Using MRI Images.

Journal: Cancers

Status: data only, 5 datasets cited

[13564] doi:10.3390/e27090919 [paper, repository]

A Novel Co-Designed Multi-Domain Entropy and Its Dynamic Synapse Classification Approach for EEG Seizure Detection.

Journal: Entropy (Basel, Switzerland)

Authors' code: zyzc75/DySC-DME (no license)

Status: code verified, 11 files readable, 2 matches

[13565] doi:10.3390/ph18091307 [paper, data]

Isoliquiritigenin as a Neuronal Radiation Mitigant: Mitigating Radiation-Induced Anhedonia Tendency Targeting Grik3/Grm8/Grin3a via Integrated Proteomics and AI-Driven Discovery.

Journal: Pharmaceuticals (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 29 August 2025 (47 papers)

[13566] doi:10.1002/advs.202506109 [paper, repository]

Human Brain Cell-Type-Specific Aging Clocks Based on Single-Nuclei Transcriptomics.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: chanmur/ppfctx_aging_snRNAseq_analysis_2025 (no license), SZTAKI-SU-Rejuvenation-Group/ppfctx_aging_snRNAseq_clock_2025 (MIT)

Status: code verified, 27 files readable, 10 matches

[13567] doi:10.1002/advs.202508161 [paper, repository]

Targeting ROCK2 to Restore Epileptic Synaptic Networks via Mitophagy Activation: Insights from Translational Imaging of SV2A In Vivo.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: echumin/CovNet (no license)

Status: code verified, 218 files readable, 3 matches

[13568] doi:10.1002/mrm.70052 [paper, repository]

A network-assisted joint image and motion estimation approach for robust 3D MRI motion correction across severity levels.

Journal: Magnetic resonance in medicine

Authors' code: BRAIN-TO/PyMoCo_v2 (no license)

Status: code verified, 14 files readable, 4 matches

[13569] doi:10.1007/s10462-025-11347-y [paper, repository]

Applications of machine learning for computer-aided diagnosis of Parkinson's disease: progress and benchmark case study.

Journal: Artificial intelligence review

Authors' code: yiming95/PD_ML_benchmark (no license), LiaqatAli007/Automated-Detection-of-Parkinson-s-Disease-Based-on-Multiple-Types-of-Sustained-Phonations-using-Lin (no license), LiaqatAli007/Automated−Detection-of-Parkinson-s-Disease-Based-on-Multiple-Types-of-Sustained-Phonations-using-Lin (no license), DucMinhDimitriNguyen/Transformers-for-1D-signals-in-Parkinson-s-disease-detection-from-gait (no license), lzfelix/bag-of-samplings (no license), ymlasu/A-Bio-marker-using-Topological-Machine-Learning-of-rs-fMRI (no license), ppmi-info.org/data (no license), csie.ntu.edu.tw/~cjlin/libsvm (no license)

Status: code verified, 58 files readable, 3 matches

[13570] doi:10.1016/j.ajhg.2025.08.004 [paper, data]

Pathogenic variants in TMEM184B cause a neurodevelopmental syndrome associated with alteration of metabolic signaling.

Journal: American journal of human genetics

Status: data only, 1 dataset cited

[13571] doi:10.1016/j.bidere.2025.100044 [paper, data]

From machine learning to multimodal models: The AI revolution in enzyme engineering.

Journal: Biodesign research

Status: data only, 1 dataset cited

[13572] doi:10.1016/j.isci.2025.113093 [paper]

Synaptic pruning following NMDAR-dependent LTD preferentially affects isolated synapses.

Journal: iScience

Status: code on request

[13573] doi:10.1016/j.lana.2025.101213 [paper, repository]

A nomogram to predict development of brain metastasis in non-small cell lung cancer patients: a retrospective analysis using routinely available medical records.

Journal: Lancet regional health. Americas

Authors' code: hwild57/nsclc (no license)

Status: dead link

[13574] doi:10.1016/j.mex.2025.103597 [paper, repository]

A hybrid physics-informed neural and explainable AI approach for scalable and interpretable AQI predictions.

Journal: MethodsX

Authors' code: colab.research.google.com/drive/151tratrltkpifg9kgew4lcqkxkrtr1fj (no license)

Status: code verified

[13575] doi:10.1016/j.nbd.2025.107072 [paper, repository]

Spontaneous pathology in PS19 tauopathy mice progresses via brain networks.

Journal: Neurobiology of disease

Authors' code: Zenodo 7942188 (no license)

Status: empty repository

[13576] doi:10.1038/s41398-025-03565-3 [paper, repository]

Using deep learning to predict internalizing problems from brain structure in youth.

Journal: Translational psychiatry

Authors' code: marlvan/internalizing_prediction (no license)

Status: dead link

[13577] doi:10.1038/s41421-025-00828-7 [paper, repository]

Immunological and pathological characteristics of brain parenchymal and leptomeningeal metastases from non-small cell lung cancer.

Journal: Cell discovery

Authors' code: shanshenbing/LC-CNSm (no license)

Status: code verified, 14 files readable, 19 matches

[13578] doi:10.1038/s41467-025-62053-w [paper, data]

UBE3A promotes foam cell formation and counters remyelination by targeting ABCA1 for proteasomal degradation.

Journal: Nature communications

Status: data only, 1 dataset cited

[13579] doi:10.1038/s41467-025-63177-9 [paper, repository]

DeMBA: a developmental atlas for navigating the mouse brain in space and time.

Journal: Nature communications

Authors' code: ingvildeb/DeMBA_scripts (GPL-3.0)

Status: code verified, 50 files readable, 6 matches

[13580] doi:10.1038/s41467-025-63301-9 [paper, repository]

A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types.

Journal: Nature communications

Authors' code: dmcable/spacexr (GPL-3.0), algbio/spl-IsoQuant (GPL-2.0), noush-joglekar/scisorseqr (MIT)

Status: code verified, 321 files readable, 15 matches

[13581] doi:10.1038/s41467-025-63394-2 [paper, data]

A whole-brain male mouse atlas of long-range inputs to histaminergic neurons.

Journal: Nature communications

Status: data only, 1 dataset cited

[13582] doi:10.1038/s41467-025-63423-0 [paper, data]

Neural representation of nouns and verbs in congenitally blind and sighted individuals.

Journal: Nature communications

Status: data only, 1 dataset cited

[13583] doi:10.1038/s41467-025-63545-5 [paper, repository]

CSF total tau as a proxy of synaptic degeneration.

Journal: Nature communications

Authors' code: PascoalLab/soares2025-ttau (no license)

Status: code verified, 5 files readable, 3 matches

[13584] doi:10.1038/s41540-025-00579-x [paper, repository]

Utility of the continuous spectrum formed by pathological states in characterizing disease properties.

Journal: NPJ systems biology and applications

Authors' code: kyoshiaki-tky/SFA (MIT)

Status: code verified, 12 files readable, 9 matches

[13585] doi:10.1038/s41597-025-05387-w [paper, repository]

ArEEG: an Open-Access Arabic Inner Speech EEG Dataset.

Journal: Scientific data

Authors' code: Eslam21/ArEEG-an-Open-Access-Arabic-Inner-Speech-EEG-Dataset (GPL-3.0)

Status: code verified, 7 files readable, 2 matches

[13586] doi:10.1038/s41598-025-17733-4 [paper, data]

Computational insights and experimental breakthroughs in identifying next-generation acetylcholinesterase inhibitors.

Journal: Scientific reports

Status: data only, 1 dataset cited

[13587] doi:10.1038/s42003-025-08635-2 [paper, data]

Deficiency of KMT2D causes autistic-like behavior in mice and zebrafish.

Journal: Communications biology

Status: data only, 1 dataset cited

[13588] doi:10.1038/s42003-025-08691-8 [paper, repository]

SARS-CoV-2 vaccination during pregnancy enhances offspring hippocampal neurogenesis and working memory via IFN-γ-responsive microglia.

Journal: Communications biology

Authors' code: LingxiaoWang357/Fangfang_Qi_Vaccine (no license)

Status: code verified, 2 files readable, 2 matches

[13589] doi:10.1038/s42003-025-08697-2 [paper, data]

Sphingomyelin regulates the transcriptional machinery in nuclear lipid microdomains.

Journal: Communications biology

Status: data only, 1 dataset cited

[13590] doi:10.1073/pnas.2506257122 [paper, data]

TIGER: A tdTomato in vivo genome-editing reporter mouse for investigating precision-editor delivery approaches.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[13591] doi:10.1093/braincomms/fcaf316 [paper, repository]

Bridging speech and sight: white matter anatomy in ticker-tape synaesthesia.

Journal: Brain communications

Authors' code: Zenodo 15664146 (CC-BY-4.0)

Status: code verified, 4 files readable, 2 matches

[13592] doi:10.1101/2025.08.29.673162 [paper, data]

Higher baseline alpha power is associated with faster responses in visual search

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[13593] doi:10.1111/dom.70058 [paper, data]

Neural pathways to bariatric success: What explainable AI reveals that conventional fMRI methods may miss.

Journal: Diabetes, obesity & metabolism

Status: data only, 1 dataset cited

[13594] doi:10.1126/sciadv.adv7033 [paper, data]

Voice identity invariance by anterior temporal lobe neurons.

Journal: Science advances

Status: data only, 1 dataset cited

[13595] doi:10.1126/sciadv.adw0128 [paper, repository]

Cytoskeletal control in adult microglia is essential to restore neurodevelopmental synaptic and cognitive deficits.

Journal: Science advances

Authors' code: AttwellLab/Microglia (MIT)

Status: code verified, 8 files readable

[13596] doi:10.1161/jaha.125.043931 [paper, repository]

Commissural Fiber Disruption Is Associated With Symptom Onset in Cerebral Autosomal-Dominant Arteriopathy With Subcortical Infarcts and Leukoencephalopathy.

Journal: Journal of the American Heart Association

Authors' code: psmd-marker.com (no license)

Status: code verified

[13597] doi:10.1186/s11689-025-09638-0 [paper]

Learning impairments in Fmr1^-/-mice on an audio-visual temporal pattern discrimination task.

Journal: Journal of neurodevelopmental disorders

Status: code on request

[13598] doi:10.1186/s13024-025-00883-4 [paper, data]

β-Amyloid induces microglial expression of GPC4 and APOE leading to increased neuronal tau pathology and toxicity.

Journal: Molecular neurodegeneration

Status: data only, 4 datasets cited

[13599] doi:10.1242/dev.204561 [paper, repository]

Application and measurement of tissue-scale tension in avian epithelia in vivo to study multiscale mechanics and inter-germ layer coupling.

Journal: Development (Cambridge, England)

Authors' code: eigenP/OikonomouCalvaryNerurkar2024 (MIT)

Status: code verified, 4 files readable, 2 matches

[13600] doi:10.1371/journal.pone.0328828 [paper, repository]

Personalized MRI-based characterization of subcortical anomalies in Ataxia-Telangiectasia using deep-learning.

Journal: PloS one

Authors' code: stefanpsz/A-T_Autoencoder (MIT)

Status: code verified, 3 files readable

[13601] doi:10.2147/dddt.s515605 [paper, data]

Mechanisms of Magnoliae Officinalis Cortex Volatile Oil in Alleviating 5-Fluorouracil-Induced Mucositis via Multi-Omics Approaches.

Journal: Drug design, development and therapy

Status: data only, 1 dataset cited

[13602] doi:10.3389/fimmu.2025.1657738 [paper]

IgT and IgD dominance in the teleost central nervous system.

Journal: Frontiers in immunology

Status: data only

[13603] doi:10.3389/fmed.2025.1636059 [paper, data]

Lightweight CNN for accurate brain tumor detection from MRI with limited training data.

Journal: Frontiers in medicine

Status: data only, 2 datasets cited

[13604] doi:10.3389/fnagi.2025.1650497 [paper, repository]

Association between shift work and brain age gap: a neuroimaging study using MRI-based brain age prediction algorithms.

Journal: Frontiers in aging neuroscience

Authors' code: james-cole/brainageR (LGPL-3.0), estenhl/pyment-public (CC-BY-NC-4.0), Milan-BUAA/TSAN-brain-age-estimation (MIT), LemuelPuglisi/SynthBA (no license)

Status: code verified, 104 files readable, 6 matches

[13605] doi:10.3389/fncir.2025.1618351 [paper, repository]

Summary statistics of learning link changing neural representations to behavior.

Journal: Frontiers in neural circuits

Authors' code: Pehlevan-Group/dmft_wide_networks (MIT)

Status: code verified, 6 files readable

[13606] doi:10.3389/fnhum.2025.1652607 [paper, repository]

Systematic review and meta-analysis of the relationships between real-time neurofeedback training parameters and acquisition of neural modulation.

Journal: Frontiers in human neuroscience

Authors' code: Zenodo 22550899 (CC-BY-4.0), Zenodo 22550898 (CC-BY-4.0)

Status: code verified, 16 files readable, 1 match

[13607] doi:10.3389/fonc.2025.1643208 [paper, data]

Application and improvement of YOLO11 for brain tumor detection in medical images.

Journal: Frontiers in oncology

Status: data only, 2 datasets cited

[13608] doi:10.3389/fphar.2025.1656301 [paper, data]

Zebrafish-based assessment of luteolin's potential in modulating seizure responses.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[13609] doi:10.3390/diagnostics15172190 [paper, data]

Enhancing Alzheimer's Diagnosis with Machine Learning on EEG: A Spectral Feature-Based Comparative Analysis.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[13610] doi:10.4266/acc.001425 [paper, repository]

Deep learning-based model for detection of intracranial waveforms with poor brain compliance in southern Thailand.

Journal: Acute and critical care

Authors' code: huggingface.co/spaces/thara7640/icpwaveform (apache)

Status: code verified, 2 files readable

[13611] doi:10.5964/ejop.14685 [paper, data]

One-Minute Silent Video Clips: A Database of Valence and Arousal.

Journal: Europe's journal of psychology

Status: data only, 1 dataset cited

[13612] doi:10.7717/peerj-cs.3129 [paper, repository]

Optimizing a 3D convolutional neural network to detect Alzheimer's disease based on MRI.

Journal: PeerJ. Computer science

Authors' code: metho12/Optimizing-a-3DCNN (no license), supp:PMC12453851/peerj-cs-11-3129-s001.ipynb (no license)

Status: code verified, 1 file readable, 1 match

Thursday, 28 August 2025 (48 papers)

[13613] doi:10.1002/advs.202504922 [paper, data]

Mesenchymal Stromal Cells Play an Analgesic Role Through a Npy2r Sensory Neuron-Mediated Lung-to-Brain Axis.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[13614] doi:10.1002/epi4.70133 [paper, data]

Deficiency of nNOS in adult-born dentate granule cells causes epilepsy.

Journal: Epilepsia open

Status: data only, 1 dataset cited

[13615] doi:10.1002/mds.70021 [paper, repository]

Somato-Cognitive Action Network in Focal Dystonia.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: OSF nmdka (no license)

Status: code verified, 2 files readable, 3 matches

[13616] doi:10.1002/smll.202505649 [paper, repository]

Reconfigurable Neuron and Synapse Operations in a Steep-Switching Nonvolatile Transistor.

Journal: Small (Weinheim an der Bergstrasse, Germany)

Authors' code: IMCD-Lab/Neuormoprhic-simulation (no license)

Status: code verified, 15 files readable

[13617] doi:10.1007/s10548-025-01139-6 [paper, repository]

Pre-stimulus Microstates and Bodily Signals Independently Influence Perceptual Awareness at the Discrimination Threshold.

Journal: Brain topography

Authors' code: Zenodo 15173349 (MIT), vivile42/leupin_britz_micro (MIT)

Status: code verified, 72 files readable, 5 matches

[13618] doi:10.1016/j.ajhg.2025.07.020 [paper, data]

Molecular and developmental deficits in Smith-Magenis syndrome human stem cell-derived cortical neural models.

Journal: American journal of human genetics

Status: data only, 1 dataset cited

[13619] doi:10.1016/j.isci.2025.113454 [paper, repository]

Chronic optogenetic activation of hippocampal CA1 neurons triggers Alzheimer's disease-like proteomic remodeling.

Journal: iScience

Authors' code: Zenodo 16734504 (MIT), vdemichev/DiaNN (other), pdesrosiers/consensus-clustering-hyperactivityad (MIT)

Status: code verified, 447 files readable, 6 matches

[13620] doi:10.1016/j.isci.2025.113462 [paper, repository]

Intracellular lactate dynamics in <i>Drosophila</i> neurons.

Journal: iScience

Authors' code: kvenkatachalam-lab/Price-et-al-2025 (no license)

Status: empty repository

[13621] doi:10.1016/j.mcpro.2025.101064 [paper]

Comprehensive Evaluation of Cleavable Bioorthogonal Probes for Site-Specific O-GlcNAc Proteomics.

Journal: Molecular & cellular proteomics : MCP

Status: code on request

[13622] doi:10.1016/j.physbeh.2025.115079 [paper, repository]

Predicting sugar-sweetened beverage intake from the brain and known risk factors in adolescents.

Journal: Physiology & behavior

Authors' code: grace-shearrer/ABCDssb (no license)

Status: code verified, 5 files readable, 3 matches

[13623] doi:10.1016/j.stemcr.2025.102611 [paper, repository]

Single-cell transcriptome and surfaceome profiling of the adult human retinal pigment epithelium.

Journal: Stem cell reports

Authors' code: neural-stem-cell-institute/screp (other), neural-stem-cell-institute/RPE-CITE-Seq (no license)

Status: code verified, 17 files readable, 7 matches

[13624] doi:10.1016/j.xcrm.2025.102319 [paper]

Selenized neural stem cell-derived exosomes: A neotype therapeutic agent for traumatic injuries of the central nervous system.

Journal: Cell reports. Medicine

Status: code on request

[13625] doi:10.1038/s41380-025-03135-5 [paper, repository]

Subcortical modulation of the salience network during negative emotional processing in mood and anxiety disorders.

Journal: Molecular psychiatry

Authors' code: Sevilince/Clinical_Subcortical_SN_DCM (no license)

Status: code verified, 3 files readable, 6 matches

[13626] doi:10.1038/s41380-025-03166-y [paper, repository]

Associations between trajectories of plasma biomarkers for Alzheimer's disease, brain structures, and cognitive function: a prospective cohort study in the UK Biobank.

Journal: Molecular psychiatry

Authors' code: huangdouz/ukb_biomrker (no license)

Status: dead link

[13627] doi:10.1038/s41398-025-03558-2 [paper]

ROC Analysis of Biomarker Combinations in Fragile X Syndrome-Specific Clinical Trials: Evaluating Treatment Efficacy via Exploratory Biomarkers.

Journal: Translational psychiatry

Status: code on request

[13628] doi:10.1038/s41467-025-62849-w [paper]

Brain anatomy of the Cambrian fossil Jianfengia multisegmentalis informs euarthropod phylogeny.

Journal: Nature communications

Status: code on request

[13629] doi:10.1038/s41467-025-62858-9 [paper, repository]

Cortex folding by combined progenitor expansion and adhesion-controlled neuronal migration.

Journal: Nature communications

Authors' code: Zenodo 15583689 (CC-BY-4.0), Zenodo 15522270 (CC-BY-4.0), millitesla/timelapse_analysis (no license)

Status: code verified, 9 files readable, 2 matches

[13630] doi:10.1038/s41467-025-63302-8 [paper, data]

Bayesian neural network with unified entropy source and synapse weights using 3D 16-layer Fe-diode array.

Journal: Nature communications

Status: data only, 1 dataset cited

[13631] doi:10.1038/s41531-025-01127-4 [paper, repository]

Longitudinal non-negative matrix factorization identifies the altered trajectory of motor symptoms in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: jcbeer/longcombat (Artistic-2.0), smatmo/l0-sparse-NMF (BSD-3-Clause), UESTC-nuero-lab/Longitudinal-NMF-identifies-the-altered-trajectory-of-motorsymptoms-in-Parkinsons-disease (no license)

Status: code verified, 32 files readable

[13632] doi:10.1038/s41539-025-00349-8 [paper]

Offline consolidation mechanisms of the retrieval practice effect: an analysis based on EEG signal characteristics.

Journal: NPJ science of learning

Status: code on request

[13633] doi:10.1038/s41598-025-16154-7 [paper, data]

Integrating physiological signals for enhanced sleep apnea diagnosis with SleepNet.

Journal: Scientific reports

Status: data only, 1 dataset cited

[13634] doi:10.1038/s41598-025-16958-7 [paper, repository]

Frequency-specific neural abnormalities in congenital prosopagnosia revealed by magnetoencephalography during face perception.

Journal: Scientific reports

Authors' code: magnetoencephalography/c (no license), Magnetoencephalography/C_P (no license), Zenodo 16749552 (MIT)

Status: code verified, 38 files readable, 4 matches

[13635] doi:10.1073/pnas.2515113122 [paper, repository]

Amyloid β-dependent neuronal silencing through synaptic decoupling.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 16837260 (CC-BY-4.0)

Status: code verified

[13636] doi:10.1093/braincomms/fcaf320 [paper, repository]

Cortical morphology changes in default mode network regions as predictors of cognitive decline in relation to amyloid and tau deposits.

Journal: Brain communications

Authors' code: ariannamenardi/DMN_structural_alterations_AD (no license)

Status: code verified, 2 files readable, 1 match

[13637] doi:10.1101/2025.08.28.672821 [paper, repository]

Early oligodendrocyte dysfunction signature in Alzheimer’s disease: Insights from DNA methylomics and transcriptomics

Journal: bioRxiv (preprint)

Authors' code: CBettencourtLab/AD_OLGDNAm (no license)

Status: code verified, 6 files readable, 6 matches

[13638] doi:10.1162/imag.a.110 [paper, repository]

On the analysis of functional PET (fPET)-FDG: Baseline mischaracterization can introduce artifactual metabolic (de)activations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: CANDYlaboratory/fPET-Baseline-Characterization (no license)

Status: code verified, 6 files readable, 5 matches

[13639] doi:10.1162/imag.a.126 [paper, repository]

Neural speech tracking in noise reflects the opposing influence of SNR on intelligibility and attentional effort.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: naplab/AAD_INT (MIT)

Status: code verified, 3 files readable

[13640] doi:10.1162/imag.a.130 [paper, repository]

Tuning of cortical color mechanisms revealed using steady-state visually evoked potentials.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF v5wxn (no license)

Status: code verified, 18 files readable

[13641] doi:10.1172/jci182955 [paper, repository]

Peripherally administered androgen receptor-targeted antisense oligonucleotide rescues spinal pathology in a murine SBMA model.

Journal: The Journal of clinical investigation

Authors' code: ChrLeeee/AR113Q-snRNA-Seq (no license)

Status: code verified, 8 files readable, 6 matches

[13642] doi:10.1186/s13024-025-00887-0 [paper, data]

MS4A6A/Ms4a6d deficiency disrupts neuroprotective microglia functions and promotes inflammation in Alzheimer's disease model.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[13643] doi:10.1186/s13102-025-01281-5 [paper]

Long-term basketball training shapes cerebellar-frontal integration for enhanced cognitive control.

Journal: BMC sports science, medicine & rehabilitation

Status: code on request

[13644] doi:10.1186/s40478-025-01985-2 [paper, repository]

Unveiling the intricate dynamics of the interplay between triple-negative breast cancer cells and the blood-brain barrier endothelium.

Journal: Acta neuropathologica communications

Authors' code: Zenodo 22821385 (CC-BY-4.0), Zenodo 22821386 (CC-BY-4.0)

Status: code verified, 12 files readable

[13645] doi:10.1371/journal.pone.0323827 [paper, repository]

Single nucleus RNA sequencing of the cerebral cortex from genetically diverse inbred mouse strains reveals differences in pericyte and endothelial cell composition.

Journal: PloS one

Authors' code: jieunesther/CC_snRNAseq (no license)

Status: code verified, 4 files readable, 2 matches

[13646] doi:10.1371/journal.pone.0331188 [paper, repository]

VNC-Dist: A machine learning-based semi-automated pipeline for quantification of neuronal position in the C. elegans ventral nerve cord.

Journal: PloS one

Authors' code: C-elegans-VNC/VNC-Dist (MIT)

Status: code verified, 6 files readable, 1 match

[13647] doi:10.1523/eneuro.0068-25.2025 [paper, data]

Test-Retest Reliability of TRF-Derived Measures of Cortical Tracking of the Speech Envelope.

Journal: eNeuro

Status: data only, 1 dataset cited

[13648] doi:10.1556/2006.2025.00066 [paper, repository]

Dysfunctional reward processing amplifies stress-related smartphone overuse: Evidence from ERPs and ecological momentary assessment.

Journal: Journal of behavioral addictions

Authors' code: OSF wtahd (no license)

Status: empty repository

[13649] doi:10.1556/2006.2025.00068 [paper, repository]

Temperament, brain structure and problematic video gaming in adolescence - A six-year longitudinal study.

Journal: Journal of behavioral addictions

Authors' code: doi:10.5061/dryad.zpc866th0 (no license)

Status: code verified

[13650] doi:10.26508/lsa.202503469 [paper, data]

Enhanced locomotor recovery in mice lacking GlcNAc6ST1 and GlcNAc6ST4 following spinal cord injury.

Journal: Life science alliance

Status: data only, 1 dataset cited

[13651] doi:10.3389/fimmu.2025.1558307 [paper, data]

ATP/P2X7 receptor signal aggravates ischemic stroke injury by activating Th17 cells via STAT3/IL-21 pathway.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[13652] doi:10.3389/fnins.2025.1653007 [paper, repository]

Exploring functional connectivity at different timescales with multivariate mode decomposition.

Journal: Frontiers in neuroscience

Authors' code: Dmocrito/mvmd (MIT)

Status: code verified, 4 files readable, 1 match

[13653] doi:10.3389/fphar.2025.1638068 [paper, data]

Spirodelae Herba ethanol extract attenuates neurotoxicity in hippocampal cells and improves scopolamine-induced cognitive impairment in mice.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[13654] doi:10.3390/brainsci15090941 [paper, repository]

Multidimensional Representation Dynamics for Abstract Visual Objects in Encoded Tangram Paradigms.

Journal: Brain sciences

Authors' code: OSF 7qm35 (no license)

Status: code verified, 4 files readable, 1 match

[13655] doi:10.3390/ijms26178349 [paper, data]

Nuclear Roles of Spliceosome-Associated microRNAs in Neuronal Cancer Cells.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[13656] doi:10.3390/s25175337 [paper, data]

TopoTempNet: A High-Accuracy and Interpretable Decoding Method for fNIRS-Based Motor Imagery.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[13657] doi:10.7554/elife.103738 [paper, data]

Orexin population activity precisely reflects net body movement across behavioral and metabolic states.

Journal: eLife

Status: data only, 1 dataset cited

[13658] doi:10.7554/elife.104456 [paper, repository]

A neural network model that generates salt concentration memory-dependent chemotaxis in <i>Caenorhabditis elegans</i>.

Journal: eLife

Authors' code: 118-Oganesson/c_elegans_chemotaxis (MIT)

Status: code verified, 34 files readable

[13659] doi:10.7554/elife.106557 [paper, repository]

Unsupervised pipeline for the identification of cortical excitatory and inhibitory neurons in high-density multielectrode arrays with ground-truth validation.

Journal: eLife

Authors' code: figshare 28458749 (CC-BY-4.0), evgiraud/BRWExtract (no license)

Status: code verified, 32 files readable, 3 matches

[13660] doi:10.7554/elife.96515 [paper, repository]

Optogenetic silencing of hippocampal inputs to the retrosplenial cortex causes a prolonged disruption of spatial working memory.

Journal: eLife

Authors' code: doi:10.5061/dryad.fxpnvx11z (no license)

Status: code verified

Wednesday, 27 August 2025 (36 papers, 4 on this page)

[13661] doi:10.1002/advs.202504956 [paper, repository]

Spatiotemporal Characterization of the Functional MRI Latency Structure with Respect to Neural Signaling and Brain Hierarchy.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: MICA-MNI/BrainStat (BSD-3-Clause), gudtls17/LatencyStructure (no license), by9433/lagstructure (no license)

Status: code verified, 268 files readable, 10 matches

[13662] doi:10.1007/s10278-025-01612-5 [paper]

Robust Quantification of Affected Brain Volume from Computed Tomography Perfusion: A Hybrid Approach Combining Deep Learning and Singular Value Decomposition.

Journal: Journal of imaging informatics in medicine

Status: code on request

[13663] doi:10.1007/s12672-025-03501-3 [paper, data]

Improved brain tumor classification through DenseNet121 based transfer learning.

Journal: Discover oncology

Status: data only, 1 dataset cited

[13664] doi:10.1016/j.bbrep.2025.102216 [paper, data]

The ontogeny of circadian clock gene expression during mouse fetal development.

Journal: Biochemistry and biophysics reports

Status: data only, 1 dataset cited

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