Every paper, by date: page 62

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 62 of 200: 27 August 2025 to 20 August 2025.

Wednesday, 27 August 2025 (36 papers, 32 on this page)

[13665] doi:10.1016/j.isci.2025.113435 [paper, repository]

Phosphorylation of presynaptic PLPPR3 controls synaptic vesicle release.

Journal: iScience

Authors' code: ngimber/axonal_cluster_workflow (no license)

Status: code verified, 2 files readable, 2 matches

[13666] doi:10.1016/j.nbd.2025.107070 [paper, data]

A pathogenic alpha synuclein variant exacerbates disease progression in a neuron-specific Gba-KO mouse.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[13667] doi:10.1016/j.neuron.2025.07.030 [paper, repository]

A posture subspace in the primary motor cortex.

Journal: Neuron

Authors' code: Zenodo 16166108 (CC-BY-4.0), machenslab/dPCA (MIT), pmarino162/posture-git-repo (no license)

Status: code verified, 227 files readable, 9 matches

[13668] doi:10.1016/j.xpro.2025.104048 [paper, repository]

Protocol for investigating working memory modulation of visual signal processing in the monkey extrastriate cortex using local field potentials.

Journal: STAR protocols

Authors' code: AlavieMirfathollahi/S1-COT-Decoding (no license), majid7293/ITC (no license)

Status: code verified, 17 files readable, 18 matches

[13669] doi:10.1038/s41386-025-02202-3 [paper, data]

Targeting GPR3 as a novel approach for nicotine cessation therapeutic development.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[13670] doi:10.1038/s41467-025-62551-x [paper, repository]

Invariant inter-subject relational structures in high order human visual cortex.

Journal: Nature communications

Authors' code: oferlip/Invariant-Inter-Subject-Relational-Structures-in-the-Human-Visual (no license)

Status: code verified, 15 files readable

[13671] doi:10.1038/s41467-025-63237-0 [paper, data]

Microglial replacement in a Sandhoff disease mouse model reveals myeloid-derived β-hexosaminidase is necessary for neuronal health.

Journal: Nature communications

Status: data only, 1 dataset cited

[13672] doi:10.1038/s41467-025-63346-w [paper, repository]

Generative emergence of non-local representations in the hippocampus.

Journal: Nature communications

Authors' code: GDYlab/GDYlabcode (no license)

Status: code verified, 200 files readable, 29 matches

[13673] doi:10.1038/s41556-025-01745-3 [paper, data]

Synthetic ZFTA fusions pinpoint disordered protein domain acquisition as a mechanism of brain tumorigenesis.

Journal: Nature cell biology

Status: data only, 2 datasets cited

[13674] doi:10.1038/s41586-025-09419-8 [paper, data]

Maternal stress triggers early-life eczema through fetal mast cell programming.

Journal: Nature

Status: data only, 1 dataset cited

[13675] doi:10.1038/s41586-025-09427-8 [paper, repository]

Cocaine chemogenetics blunts drug-seeking by synthetic physiology.

Journal: Nature

Authors' code: Osolca/F-Phot-Analysis (no license), Zenodo 15665589 (CC-BY-4.0)

Status: code verified, 8 files readable

[13676] doi:10.1038/s41586-025-09446-5 [paper, repository]

Optical generative models.

Journal: Nature

Authors' code: Zenodo 15446687 (CC-BY-4.0), Zenodo 15446686 (CC-BY-4.0)

Status: code verified, 24 files readable, 3 matches

[13677] doi:10.1038/s41593-025-02052-8 [paper, repository]

Large-scale cortical functional networks are organized in structured cycles.

Journal: Nature neuroscience

Authors' code: OHBA-analysis/Tinda (no license), Zenodo 6875060 (BSD-3-Clause)

Status: code verified, 203 files readable, 8 matches

[13678] doi:10.1038/s41597-025-05873-1 [paper, repository]

A Resource for Exploring Regional Diversity in the Male Rat Brain Synaptic Proteome.

Journal: Scientific data

Authors' code: doudouw224/RB-SynSubDB (MIT)

Status: code verified, 6 files readable, 5 matches

[13679] doi:10.1038/s41598-025-16213-z [paper, repository]

Two stage large language model approach enhancing entity classification and relationship mapping in radiology reports.

Journal: Scientific reports

Authors' code: chaihoyah/radiology_report_information_extraction (no license)

Status: code verified, 9 files readable, 10 matches

[13680] doi:10.1038/s41598-025-17394-3 [paper]

Stepwise approach to alzheimer's disease diagnosis in primary care using cognitive screening, risk factors, neuroimaging and plasma biomarkers.

Journal: Scientific reports

Status: code on request

[13681] doi:10.1038/s42003-025-08703-7 [paper, repository]

Functional MRI signatures of autonomic physiology in aging.

Journal: Communications biology

Authors' code: candylaboratory/physiology (no license)

Status: code verified, 9 files readable, 3 matches

[13682] doi:10.1038/s42003-025-08719-z [paper, data]

Anterior cingulate cortex mediates the comorbidity between colorectal cancer and depression-like behaviors.

Journal: Communications biology

Status: data only, 1 dataset cited

[13683] doi:10.1097/js9.0000000000003143 [paper, repository]

Multimodal deep learning to predict postoperative major adverse cardiac and cerebrovascular events after noncardiac surgery.

Journal: International journal of surgery (London, England)

Authors' code: oskumd2/ECG_MACCE (no license)

Status: code verified, 9 files readable, 11 matches

[13684] doi:10.1098/rsbl.2025.0333 [paper, repository]

Hidden in plain sound: the scientific potential of house mouse squeaks.

Journal: Biology letters

Authors' code: doi:10.6084/m9.figshare.c.7958588 (no license)

Status: code found, still to be checked

[13685] doi:10.1098/rsob.240387 [paper, repository]

Functional disruption of oxytocin projections participates atypical social and anxiety-like behaviours in BTBR mouse model of autism.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.7973579 (no license)

Status: code found, still to be checked

[13686] doi:10.1098/rsos.251036 [paper, repository]

Molecular flexibility of hyaluronic acid has a profound effect on invasion of cancer cells.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7993442 (no license)

Status: code found, still to be checked

[13687] doi:10.1101/2025.08.22.671763 [paper, repository]

Age-related changes in behavioural and neural variability in a decision-making task

Journal: bioRxiv (preprint)

Authors' code: Fenying-Zang/Ageing_behavioral_and_neural_variability (MIT)

Status: code verified, 36 files readable, 15 matches

[13688] doi:10.1126/sciadv.adu2937 [paper, repository]

Gut-brain nexus: Mapping multimodal links to neurodegeneration at biobank scale.

Journal: Science advances

Authors' code: NIH-CARD/Gut-Brain-Nexus (MIT), Zenodo 15850226 (MIT)

Status: code verified, 5 files readable, 5 matches

[13689] doi:10.1126/sciadv.adu3189 [paper, data]

Notch signaling blockade links transcriptome heterogeneity in quiescent neural stem cells with reactivation routes and potential.

Journal: Science advances

Status: data only, 1 dataset cited

[13690] doi:10.1186/s13287-025-04571-4 [paper, data]

Extracellular lactate improves neurogenesis by modulating H3K9 lactylation and SnoN expression under hypoxic conditions.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[13691] doi:10.1186/s13287-025-04603-z [paper, data]

Directed and efficient generation of calretinin interneurons from human pluripotent stem cells.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[13692] doi:10.1371/journal.pone.0329411 [paper, data]

Neurobiological substrates of altered states of consciousness induced by high ventilation breathwork accompanied by music.

Journal: PloS one

Status: data only, 1 dataset cited

[13693] doi:10.1523/jneurosci.0447-25.2025 [paper]

Global Motor System Suppression as the Primary Mechanism of Human Action Stopping: Challenging the Pause-Then-Cancel Model.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: code on request

[13694] doi:10.3390/children12091127 [paper, repository]

The Expanding Frontier: The Role of Artificial Intelligence in Pediatric Neuroradiology.

Journal: Children (Basel, Switzerland)

Authors' code: onnx/models (Apache-2.0)

Status: code verified, 61 files readable, 1 match

[13695] doi:10.7554/elife.101428 [paper, repository]

Cellular and circuit features distinguish mouse dentate gyrus semilunar granule cells and granule cells activated during contextual memory formation.

Journal: eLife

Authors' code: VijiSanthakumarLab/eLife_Correlation_Cells_2025 (Apache-2.0)

Status: code verified, 6 files readable, 5 matches

[13696] doi:10.7554/elife.97964 [paper, repository]

Whole-body connectome of a segmented annelid larva.

Journal: eLife

Authors' code: catmaid/catmaid (GPL-3.0), identifiers.org/rrid:scr_006278 (no license), Zenodo 15830426 (CC-BY-4.0), jekelylab/platynereis_3d_connectome_2024 (GPL-3.0)

Status: code verified, 898 files readable, 40 matches

Tuesday, 26 August 2025 (37 papers)

[13697] doi:10.1002/advs.202506833 [paper, repository]

Dynamic Neural Deactivation Bridges Direct and Competitive Inhibition Processes.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: ritcheym/fmri_misc (no license)

Status: code verified, 9 files readable

[13698] doi:10.1016/j.crmeth.2025.101143 [paper]

Developmental transformations of Purkinje cells tracked by DNA electrokinetic mobility.

Journal: Cell reports methods

Status: code on request

[13699] doi:10.1016/j.ymthe.2025.08.039 [paper, data]

Neonatal microglia replacement in mice modulates seizure severity in adulthood.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: data only, 1 dataset cited

[13700] doi:10.1021/acs.est.5c05887 [paper, repository]

PBDE Flame Retardant Exposure Causes Neurobehavioral and Transcriptional Effects in First-Generation but Not Second-Generation Offspring Fish.

Journal: Environmental science & technology

Authors' code: WhiteheadLab/Multigen_BDE_heteroclitus (no license)

Status: code verified, 2 files readable, 1 match

[13701] doi:10.1038/s41380-025-03182-y [paper, repository]

Short- and long-term modulation of rat prefrontal cortical activity following single doses of psilocybin.

Journal: Molecular psychiatry

Authors' code: OSF t69ap (no license), RahulGupta23019/PsiloDynamics (no license)

Status: code verified, 13 files readable, 1 match

[13702] doi:10.1038/s41398-025-03493-2 [paper]

Deep adversarial learning identifies ADHD-specific associations between apoptotic genes and white matter microstructure in frontal-striatum-cerebellum circuit.

Journal: Translational psychiatry

Status: code on request

[13703] doi:10.1038/s41467-025-62836-1 [paper, data]

SeeThrough: a rationally designed skull clearing technique for in vivo brain imaging.

Journal: Nature communications

Status: data only, 2 datasets cited

[13704] doi:10.1038/s41467-025-63119-5 [paper, repository]

An integrated transcriptomic and proteomic map of the mouse hippocampus at synaptic resolution.

Journal: Nature communications

Authors' code: gitlab.mpcdf.mpg.de/mpibr/schu/synaptosort (no license), gitlab.mpcdf.mpg.de/mpibr/schu/hippocampusmicrodissections (no license)

Status: code verified, 8 files readable, 16 matches

[13705] doi:10.1038/s41467-025-63167-x [paper, repository]

Programmable epigenome editing by transient delivery of CRISPR epigenome editor ribonucleoproteins.

Journal: Nature communications

Authors' code: Nunez-Lab (no license)

Status: code verified

[13706] doi:10.1038/s41467-025-63211-w [paper, data]

ALS/FTD-linked TBK1 deficiency in microglia induces an aged-like microglial signature and drives social recognition deficits in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[13707] doi:10.1038/s41467-025-63243-2 [paper, repository]

Spatial isotope deep tracing deciphers inter-tissue metabolic crosstalk.

Journal: Nature communications

Authors' code: xinzhul/MSITracer (no license), Zenodo 15760474 (CC-BY-4.0)

Status: code verified, 8 files readable

[13708] doi:10.1038/s41467-025-63314-4 [paper, repository]

Dopaminergic signaling regulates microglial surveillance and adolescent plasticity in the mouse frontal cortex.

Journal: Nature communications

Authors' code: RDStowell/WangLab-MatLabScripts (no license)

Status: code verified, 4 files readable, 1 match

[13709] doi:10.1038/s41592-025-02784-2 [paper, repository]

Reconstruction of a connectome of single neurons in mouse brains by cross-validating multi-scale multi-modality data.

Journal: Nature methods

Authors' code: opensource.org/licenses/mit (no license)

Status: code verified

[13710] doi:10.1038/s41597-025-05574-9 [paper, repository]

Dataset of natural conversations about appearance using fNIRS.

Journal: Scientific data

Authors' code: OSF hmvsu (no license)

Status: code verified, 2 files readable, 1 match

[13711] doi:10.1038/s41598-025-04591-3 [paper, data]

Optimized deep learning for brain tumor detection: a hybrid approach with attention mechanisms and clinical explainability.

Journal: Scientific reports

Status: data only, 1 dataset cited

[13712] doi:10.1038/s41598-025-16260-6 [paper, data]

Tumour immune infiltration is independent of peripheral circulation of white blood cells in glioblastoma.

Journal: Scientific reports

Status: data only, 1 dataset cited

[13713] doi:10.1038/s44161-025-00691-5 [paper, repository]

Inhibition of proprotein convertase SKI-1 prevents blood vessel alteration after stroke.

Journal: Nature cardiovascular research

Authors' code: DeneRinguette/Shabanzadeh2025 (Apache-2.0)

Status: code verified, 180 files readable, 22 matches

[13714] doi:10.1038/s44271-025-00309-3 [paper, repository]

Processing in working memory boosts long-term memory representations and their retrieval.

Journal: Communications psychology

Authors' code: OSF ne9yt (no license)

Status: code verified, 25 files readable, 9 matches

[13715] doi:10.1038/s44318-025-00530-0 [paper]

RABGAP1 is a sensor that facilitates the sorting and processing of amyloid precursor protein.

Journal: The EMBO journal

Status: data only

[13716] doi:10.1073/pnas.2504264122 [paper, data]

Color-neutral and reversible tissue transparency enables longitudinal deep-tissue imaging in live mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[13717] doi:10.1093/evlett/qraf028 [paper, repository]

Gestation length both shapes and is shaped by other life history traits in terrestrial eutherian mammals.

Journal: Evolution letters

Authors' code: figshare 27697764 (CC-BY-4.0)

Status: code verified, 8 files readable, 6 matches

[13718] doi:10.1162/imag.a.122 [paper, repository]

Neural micro and macrostructural correlates of visual outcomes in children with unilateral cerebral palsy: A fixel-based study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: treanus/KUL_NIS (MPL-2.0)

Status: code verified, 59 files readable, 6 matches

[13719] doi:10.1162/imag.a.123 [paper, repository]

Rootlets-based registration to the PAM50 spinal cord template.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sct-pipeline/rootlets-informed-reg2template (MIT), spinalcordtoolbox/spinalcordtoolbox (LGPL-3.0)

Status: code verified, 238 files readable, 5 matches

[13720] doi:10.1172/jci186652 [paper, repository]

Incretin receptor agonism rapidly inhibits AgRP neurons to suppress food intake in mice.

Journal: The Journal of clinical investigation

Authors' code: nikhayes/fibphoflow (MIT)

Status: code verified, 5 files readable

[13721] doi:10.1177/2689288x251370997 [paper]

Coupling of Event-Related Potential and Pupil Dilation as a Compensatory Marker of Executive Attention in Traumatic Brain Injury.

Journal: Neurotrauma reports

Status: code on request

[13722] doi:10.1186/s12859-025-06206-0 [paper, repository]

Calciumnetexplorer: an R package for network analysis of calcium imaging data.

Journal: BMC bioinformatics

Authors' code: simo-91/CalNetExploreR (other)

Status: code verified, 24 files readable, 9 matches

[13723] doi:10.1186/s12916-025-04332-3 [paper, data]

Structural brain differences in school-aged children who are HIV-exposed uninfected.

Journal: BMC medicine

Status: data only, 1 dataset cited

[13724] doi:10.1186/s12967-025-06960-y [paper, data]

The STUB1-TPIT axis regulates the secretion of adrenocorticotrophic hormone in cushing disease.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[13725] doi:10.1186/s40478-025-02054-4 [paper, data]

Astrocyte-neuron combined targeting for CYP46A1 gene therapy in Huntington's disease.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[13726] doi:10.1242/dev.204678 [paper, repository]

A PDZ-RapGEF promotes synaptic development in Caenorhabditis elegans through a Rap/Rac signaling pathway.

Journal: Development (Cambridge, England)

Authors' code: samcherra/Synapse_OneColorLineScan (GPL-3.0)

Status: empty repository, 2 files readable

[13727] doi:10.1242/dev.204681 [paper, data]

Myocardin-related transcription factor regulates actomyosin contractility and apical junction remodeling during vertebrate neural tube closure.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[13728] doi:10.1371/journal.pbio.3003353 [paper, repository]

The prefrontal cortex encodes task-identity information and flexibly adjusts its sensory processes as a function of the specific ongoing task.

Journal: PLoS biology

Authors' code: OSF z8eh9 (no license)

Status: code verified, 38 files readable, 9 matches

[13729] doi:10.1371/journal.pntd.0013466 [paper, data]

Peripheral nerve injury mediated by JEV strain NX1889 infection and impairment of Schwann cells.

Journal: PLoS neglected tropical diseases

Status: data only, 1 dataset cited

[13730] doi:10.1371/journal.pone.0329367 [paper, repository]

Hidden Markov models reveal behavioral state dynamics in depth-related locomotion in mice.

Journal: PloS one

Authors' code: matsutakehoyo/Hidden-Markov-Model-for-visual-cliff (no license), Zenodo 15770850 (CC-BY-4.0)

Status: code verified, 9 files readable

[13731] doi:10.3389/fnhum.2025.1616456 [paper, data]

EEG-based characterization of auditory attention and meditation: an ERP and machine learning approach.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[13732] doi:10.7554/elife.89330 [paper, repository]

Adaptation invariant concentration discrimination in an insect olfactory system.

Journal: eLife

Authors' code: figshare 28999229 (CC-BY-4.0)

Status: code verified, 13 files readable

[13733] doi:10.7554/elife.98775 [paper, repository]

Chronic hyperactivation of midbrain dopamine neurons causes preferential dopamine neuron degeneration.

Journal: eLife

Authors' code: Zenodo 10819038 (CC-BY-4.0), Zenodo 10819072 (CC-BY-4.0), Zenodo 10819193 (CC-BY-4.0), Zenodo 10819064 (CC-BY-4.0)

Status: code verified, 58 files readable, 16 matches

Monday, 25 August 2025 (35 papers)

[13734] doi:10.1002/ece3.71924 [paper, repository]

Influences of Diet Quality, Nursery-Habitat Complexity and Sex on Brain Development and Cognitive Performance of Brown Trout (<i>Salmo trutta</i> L.).

Journal: Ecology and evolution

Authors' code: figshare 28282034 (CC-BY-4.0)

Status: code verified, 2 files readable, 3 matches

[13735] doi:10.1016/j.celrep.2025.116159 [paper, repository]

Human brain cell types shape host-rabies virus transcriptional interactions revealing a preexisting pro-viral astrocyte subpopulation.

Journal: Cell reports

Authors' code: Zenodo 15998926 (CC-BY-4.0), ArpiarSaundersLab/2025_FeigeEtAl_2P4M (no license)

Status: code verified, 74 files readable, 22 matches

[13736] doi:10.1016/j.crmeth.2025.101142 [paper, repository]

Ultrastructural analysis of synapses after induction of spike-timing-dependent plasticity.

Journal: Cell reports methods

Authors' code: Zenodo 15976791 (CC-BY-4.0)

Status: code verified, 7 files readable

[13737] doi:10.1016/j.ibneur.2025.08.018 [paper, data]

Cortical somatosensory responses evoked by orofacial skin stretch experimentally applied during speech movement planning in stuttering and nonstuttering adults.

Journal: IBRO neuroscience reports

Status: data only, 1 dataset cited

[13738] doi:10.1016/j.jlr.2025.100890 [paper, repository]

Widespread but moderate genetic overlap between circulating polyunsaturated fatty acids and brain disorders.

Journal: Journal of lipid research

Authors' code: Huifang-Xu/PUFA-BD (no license)

Status: code verified, 33 files readable, 9 matches

[13739] doi:10.1016/j.jocmr.2025.101948 [paper, repository]

Multi-center investigation of cardiac diffusion tensor imaging in healthy volunteers by the Society of Cardiovascular Magnetic Resonance Cardiac Diffusion Special Interest Group NETwork (SIGNET).

Journal: Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance

Authors' code: ImperialCollegeLondon/cdti_data_export (no license)

Status: code verified, 5 files readable

[13740] doi:10.1016/j.neuroimage.2025.121431 [paper]

Dynamic brain states during reasoning tasks: a co-activation pattern analysis.

Journal: NeuroImage

Status: code on request

[13741] doi:10.1016/j.xcrm.2025.102305 [paper, repository]

AZ14289671 is a highly selective and blood-brain barrier penetrant irreversible TKI that targets EGFRExon20 insertions.

Journal: Cell reports. Medicine

Authors' code: Zenodo 15534119 (CC-BY-4.0)

Status: empty repository

[13742] doi:10.1016/j.ynirp.2025.100285 [paper, data]

Intestinal short-chain fatty acid turnover is not associated with resting state functional connectivity in mesolimbic dopaminergic network in healthy adults.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

[13743] doi:10.1038/s41380-025-03161-3 [paper, repository]

Effects of pre-gestational exposure to the stressors and perinatal mirtazapine administration on the excitability of hippocampal glutamate and brainstem monoaminergic neurons, hippocampal neuroplasticity, and anxiety-like behavior in rats.

Journal: Molecular psychiatry

Authors' code: nno/burstidator (MIT)

Status: code verified, 22 files readable

[13744] doi:10.1038/s41380-025-03164-0 [paper, repository]

Probiotics derived sodium benzoate improves social behavior of offspring exposed in the maternal immune activation through regulation of histone lysine benzoylation in astrocytes.

Journal: Molecular psychiatry

Authors' code: Xingyinliu-Lab/MP_2025 (no license)

Status: code verified, 10 files readable

[13745] doi:10.1038/s41467-025-62523-1 [paper, data]

An iPSC-based in vitro model recapitulates human thymic epithelial development and multi-lineage specification.

Journal: Nature communications

Status: data only, 2 datasets cited

[13746] doi:10.1038/s41467-025-62974-6 [paper, data]

Dual mitotic bookmarking by GAF and H3K27ac orchestrates differential propagation of cell fate memory in neural development.

Journal: Nature communications

Status: data only, 1 dataset cited

[13747] doi:10.1038/s41467-025-63195-7 [paper, repository]

An ion-electronic hybrid artificial neuron with a widely tunable frequency.

Journal: Nature communications

Authors' code: figshare 29528465 (CC-BY-4.0)

Status: code verified, 3 files readable

[13748] doi:10.1038/s41467-025-63326-0 [paper]

Secure wireless communication of brain-computer interface and mind control of smart devices enabled by space-time-coding metasurface.

Journal: Nature communications

Status: code on request

[13749] doi:10.1038/s41537-025-00664-4 [paper]

Association between antidiabetic drug targets and psychiatric disorders.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[13750] doi:10.1038/s41539-025-00351-0 [paper]

Applying, not ignoring: how feedback uptake and neural synchrony drive creativity.

Journal: NPJ science of learning

Status: code on request

[13751] doi:10.1038/s41597-025-05839-3 [paper, repository]

Single-neuron datasets for linguistic and semantic processing in the human amygdala and hippocampus.

Journal: Scientific data

Authors' code: neurotechcenter/VERA (MIT)

Status: code verified, 552 files readable, 1 match

[13752] doi:10.1038/s41598-025-15776-1 [paper, data]

Central nervous system control of breathing in natural conversation turn-taking.

Journal: Scientific reports

Status: data only, 1 dataset cited

[13753] doi:10.1038/s41598-025-16660-8 [paper, repository]

A novel machine learning framework for stroke type identification in resource constrained settings with robustness to missing data.

Journal: Scientific reports

Authors' code: CosmoLuminous/StrokeAssist (MIT)

Status: code verified, 19 files readable, 10 matches

[13754] doi:10.1038/s43588-025-00858-x [paper, repository]

Deep active optimization for complex systems.

Journal: Nature computational science

Authors' code: Bop2000/DANTE (MIT), Zenodo 16225698 (MIT)

Status: code verified, 62 files readable, 16 matches

[13755] doi:10.1093/braincomms/fcaf319 [paper, repository]

Improving diagnostic accuracy of routine EEG for epilepsy using deep learning.

Journal: Brain communications

Authors' code: chum-epilepsy/dl_epilepsy_reeg (no license)

Status: code verified, 36 files readable, 9 matches

[13756] doi:10.1101/2025.08.21.671518 [paper, repository]

Regions in the human inferior temporal gyrus are engaged in numerosity processing across visual stimulus categories

Journal: bioRxiv (preprint)

Authors' code: EduNeuroLab/ITG-math_localizer (no license)

Status: code verified, 27 files readable, 2 matches

[13757] doi:10.1111/joa.70035 [paper, repository]

A suture in time: The ontogeny of cranial suture morphology in mammals.

Journal: Journal of anatomy

Authors' code: Ravaat/suture_code (no license)

Status: code verified, 29 files readable, 11 matches

[13758] doi:10.1113/jp288790 [paper, repository]

Ectopic sodium channel expression decreases excitability of Drosophila Kenyon cells.

Journal: The Journal of physiology

Authors' code: aclinlab/calcium-imaging (GPL-3.0), aclinlab/greenin-whitehead-et-al (MIT), AusbornLab/KC_NaChBac_Model (no license)

Status: code verified, 85 files readable, 30 matches

[13759] doi:10.1128/mbio.02067-25 [paper, data]

Combinatorial effects of tryptophan derivatives serotonin and indole on virulence modulation of enteric pathogens.

Journal: mBio

Status: data only, 1 dataset cited

[13760] doi:10.1159/000548180 [paper, data]

Neuroanatomical Correlate of Memory Impairment in Parkinson's Disease Assessed by Composite Recall and Recognition Test with MMSE.

Journal: Dementia and geriatric cognitive disorders

Status: data only, 1 dataset cited

[13761] doi:10.1371/journal.pbio.3003354 [paper, data]

Recurrence affects the geometry of visual representations across the ventral visual stream in the human brain.

Journal: PLoS biology

Status: data only, 1 dataset cited

[13762] doi:10.1371/journal.pcbi.1013334 [paper, repository]

Deep neural networks explain spiking activity in auditory cortex.

Journal: PLoS computational biology

Authors' code: bilalhsp/deep-auditory-spikes (MIT)

Status: code verified, 64 files readable, 4 matches

[13763] doi:10.3389/fncom.2025.1646810 [paper, repository]

Maximizing theoretical and practical storage capacity in single-layer feedforward neural networks.

Journal: Frontiers in computational neuroscience

Authors' code: zzhchou/memory_capacity (other)

Status: code verified, 11 files readable, 1 match

[13764] doi:10.3389/fnins.2025.1645936 [paper, data]

The role of spatial perception in auditory looming bias: neurobehavioral evidence from impossible ears.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[13765] doi:10.3390/brainsci15090914 [paper, data]

The Involvement of Thalamic Nuclei in Schizophrenia Patients with and Without Auditory Verbal Hallucinations: A Brain Morphometry Study.

Journal: Brain sciences

Status: data only, 1 dataset cited

[13766] doi:10.3390/life15091345 [paper, repository]

FGF14 Peptide Derivative Differentially Regulates Nav1.2 and Na<sub>v</sub>1.6 Function.

Journal: Life (Basel, Switzerland)

Authors' code: modeldb:2014826 (no license)

Status: code verified

[13767] doi:10.3390/tomography11090095 [paper, data]

Electron Density and Effective Atomic Number of Normal-Appearing Adult Brain Tissues: Age-Related Changes and Correlation with Myelin Content.

Journal: Tomography (Ann Arbor, Mich.)

Status: data only, 1 dataset cited

[13768] doi:10.34133/research.0846 [paper, repository]

Gpr35 Expression Mitigates Neuroinflammation and Enriches Gut <i>Lactobacillus</i> to Relieve Parkinson's Disease.

Journal: Research (Washington, D.C.)

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

Sunday, 24 August 2025 (3 papers)

[13769] doi:10.1002/advs.202417848 [paper, repository]

Human iPSC-Derived Mononuclear Phagocytes Improve Cognition and Neural Health across Multiple Mouse Models of Aging and Alzheimer's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: shaughnmb/2024_moser_et_al (GPL-3.0)

Status: code verified, 3 files readable, 9 matches

[13770] doi:10.1002/ccs3.70040 [paper, data]

CD2-CD58 axis orchestrates cytotoxic T lymphocyte function and metabolic crosstalk in breast cancer brain metastasis.

Journal: Journal of cell communication and signaling

Status: data only, 1 dataset cited

[13771] doi:10.3390/ijms26178218 [paper, data]

The Role of miRNAs in the Differential Diagnosis of Alzheimer's Disease and Major Depression: A Bioinformatics-Based Approach.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 23 August 2025 (15 papers)

[13772] doi:10.1016/j.celrep.2025.116187 [paper, repository]

Striatal output regulates the postnatal maturation of cortical circuits.

Journal: Cell reports

Authors' code: Zenodo 15791388 (CC-BY-4.0), LarsHenrikNelson/ClampSuite (GPL-3.0), peixoto-lab/janecek_2025 (no license)

Status: code verified, 51 files readable, 4 matches

[13773] doi:10.1016/j.xhgg.2025.100497 [paper, data]

Modeling MPPH syndrome in vivo using Breasi-CRISPR.

Journal: HGG advances

Status: data only, 2 datasets cited

[13774] doi:10.1038/s41380-025-03163-1 [paper, data]

A study of gene expression in the living human brain.

Journal: Molecular psychiatry

Status: code on request, 1 dataset cited

[13775] doi:10.1038/s41380-025-03181-z [paper, data]

Histone demethylase PHF2 regulates inflammatory genes in Alzheimer's disease.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[13776] doi:10.1038/s41386-025-02206-z [paper, data]

Methylone promotes neurite outgrowth and has long-lasting effects on fear extinction learning.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[13777] doi:10.1038/s41467-025-62375-9 [paper, repository]

Neural and behavioral reinstatement jointly reflect retrieval of narrative events.

Journal: Nature communications

Authors' code: OSF baw39 (no license), DeepMReye/DeepMReye (LGPL-3.0), deepmreye/HMMeye (no license)

Status: code verified, 47 files readable, 21 matches

[13778] doi:10.1038/s41467-025-63039-4 [paper, data]

Molecular landscape, subtypes, and therapeutic vulnerabilities of central nervous system solitary fibrous tumors.

Journal: Nature communications

Status: data only, 1 dataset cited

[13779] doi:10.1038/s41467-025-63078-x [paper, repository]

Neural correlates of human fear conditioning and sources of variability in 2199 individuals.

Journal: Nature communications

Authors' code: figshare 28540580 (CC-BY-4.0)

Status: code verified, 29 files readable, 9 matches

[13780] doi:10.1038/s41598-025-16564-7 [paper, data]

A novel residual network based on multidimensional attention and pinwheel convolution for brain tumor classification.

Journal: Scientific reports

Status: data only, 2 datasets cited

[13781] doi:10.1038/s42003-025-08729-x [paper, repository]

Identification of conserved frontal neurophysiological markers of cognitive flexibility in humans and rats.

Journal: Communications biology

Authors' code: OSF gxkdv (no license)

Status: code verified, 1 file readable

[13782] doi:10.1038/s44184-025-00156-4 [paper, repository]

Unlocking deep relaxation: the power of rhythmic breathing on brain rhythms.

Journal: Npj mental health research

Authors' code: preraulab/multitaper_toolbox (BSD-3-Clause)

Status: code verified, 119 files readable, 2 matches

[13783] doi:10.1186/s12993-025-00292-z [paper, repository]

Behavioral variant frontotemporal dementia as a model for understanding the cognitive and cerebral determinants of verbal creativity.

Journal: Behavioral and brain functions : BBF

Authors' code: OSF fdwkj (no license), OSF 9qbaz (no license)

Status: code verified, 4 files readable, 5 matches

[13784] doi:10.1186/s41747-025-00622-w [paper, repository]

MRI R2* and quantitative susceptibility mapping in brain tissue with extreme iron overload.

Journal: European radiology experimental

Authors' code: emtphub.org/magnetic-software-packages (no license)

Status: code verified

[13785] doi:10.3390/brainsci15090908 [paper, repository]

Predicting Regional Cerebral Blood Flow Using Voxel-Wise Resting-State Functional MRI.

Journal: Brain sciences

Authors' code: kehongjie/rsfMRI_CBF (no license)

Status: code verified, 4 files readable, 1 match

[13786] doi:10.3390/diagnostics15172132 [paper, data]

Enhancing Diagnostic Accuracy of Neurological Disorders Through Feature-Driven Multi-Class Classification with Machine Learning.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 22 August 2025 (37 papers)

[13787] doi:10.1002/mrm.70050 [paper, repository]

Motion-robust $$ {\mathrm{T}}_2^{\ast } $$ quantification from low-resolution gradient echo brain MRI with physics-informed deep learning.

Journal: Magnetic resonance in medicine

Authors' code: compai-lab/2025-mrm-eichhorn (MIT)

Status: code verified, 67 files readable, 7 matches

[13788] doi:10.1016/j.csbj.2025.08.024 [paper, repository]

Non-invasive maturity assessment of iPSC-CMs based on optical maturity characteristics using interpretable AI.

Journal: Computational and structural biotechnology journal

Authors' code: QuoData/Maia (BSD-3-Clause)

Status: code verified, 18 files readable, 4 matches

[13789] doi:10.1016/j.cub.2025.07.066 [paper, data]

Supraspinal commands have a modular organization that is behavioral context specific.

Journal: Current biology : CB

Status: code on request, 2 datasets cited

[13790] doi:10.1016/j.isci.2025.113421 [paper, repository]

The noncoding circular RNA <i>circHomer1</i> regulates synaptic development and experience-dependent plasticity in the mouse visual cortex.

Journal: iScience

Authors' code: Zenodo 16367030 (MIT), Palpatineli/oi_analyzer (no license), surlab/circhomer1-models (MIT)

Status: code verified, 40 files readable, 4 matches

[13791] doi:10.1016/j.isci.2025.113423 [paper]

FGL2-induced metabolic dysregulation in enteric neural crest cells provides insight into Hirschsprung disease pathogenesis.

Journal: iScience

Status: code on request

[13792] doi:10.1016/j.isci.2025.113425 [paper, data]

<i>Bmal1</i> deletion alters mitochondrial microstructure and function in mouse cone photoreceptors.

Journal: iScience

Status: code on request, 1 dataset cited

[13793] doi:10.1016/j.mbm.2025.100148 [paper, data]

Theta-shaking mitigates cognitive-emotional decline via subiculum and ventral septum metabolic plasticity.

Journal: Mechanobiology in medicine

Status: data only, 1 dataset cited

[13794] doi:10.1016/j.mex.2025.103574 [paper, repository]

MLSPred-bench: Transforming electroencephalography (EEG) datasets into machine learning-ready epileptic seizure prediction benchmarks.

Journal: MethodsX

Authors' code: pcdslab/MLSPred-Bench (MIT)

Status: code verified, 8 files readable, 11 matches

[13795] doi:10.1016/j.xgen.2025.100979 [paper, repository]

LINE-1 retrotransposons mediate cis-acting transcriptional control in human pluripotent stem cells and regulate early brain development.

Journal: Cell genomics

Authors' code: molecular-neurogenetics.github.io/truster (no license), Zenodo 14362613 (CC-BY-4.0), Molecular-Neurogenetics/L1CRISPR_Adami_2025 (no license), Zenodo 15638389 (CC-BY-4.0), Zenodo 16094977 (CC-BY-4.0), molecular-neurogenetics/truster (no license), molecular-neurogenetics/l1crispr_adami_2025 (no license)

Status: code verified, 68 files readable, 27 matches

[13796] doi:10.1021/acs.est.5c05886 [paper, repository]

Early Life PBDE Flame Retardant Exposures Cause Neurobehavioral Alterations in Fish That Persist into Adulthood and Vary by Sex and Route of Exposure.

Journal: Environmental science & technology

Authors' code: WhiteheadLab/Multigen_BDE_heteroclitus (no license)

Status: code verified, 2 files readable, 1 match

[13797] doi:10.1038/s41398-025-03519-9 [paper, repository]

Cannabinoid 1 receptor availability in posttraumatic stress disorder: A positron emission tomography study.

Journal: Translational psychiatry

Authors' code: KoremNSN/CB1rPTSD (no license)

Status: code verified, 5 files readable

[13798] doi:10.1038/s41467-025-63135-5 [paper, repository]

Separable neural signals for reward and emotion prediction errors.

Journal: Nature communications

Authors' code: jpheffne/2025_epe_eeg (MIT), Zenodo 15739721 (MIT)

Status: code verified, 6 files readable

[13799] doi:10.1038/s41467-025-63138-2 [paper, repository]

A spatial single-cell atlas of the claustro-insular region uncovers key regulators of neuronal identity and excitability.

Journal: Nature communications

Authors' code: leonfodoulian/CLA_Nr4a2_hemizygous (no license)

Status: code verified, 57 files readable, 36 matches

[13800] doi:10.1038/s41531-025-01107-8 [paper]

Unraveling morphological brain network disparities Parkinsonian tremor from essential tremor: an artificial intelligence approach for clinical differentiation.

Journal: NPJ Parkinson's disease

Status: code on request

[13801] doi:10.1038/s41593-025-02043-9 [paper, repository]

CRISPR screening by AAV episome-sequencing (CrAAVe-seq): a scalable cell-type-specific in vivo platform uncovers neuronal essential genes.

Journal: Nature neuroscience

Authors' code: noamteyssier/sgcount (MIT), Zenodo 12774352 (CC-BY-4.0), noamteyssier/crispr_screen (MIT), Zenodo 12774208 (CC-BY-4.0), noamteyssier/bootstrap_analysis_invivo_crispr_screen (MIT), kampmannlab.ucsf.edu/article/scripts-vivo-screening-manuscript (no license), Zenodo 12774353 (CC-BY-4.0), Zenodo 12774305 (CC-BY-4.0)

Status: code verified, 155 files readable

[13802] doi:10.1038/s41597-025-05154-x [paper, repository]

Spacetop: A multimodal fMRI dataset unifying naturalistic processes with a rich array of experimental tasks.

Journal: Scientific data

Authors' code: Zenodo 50244 (other-open), saxelab.mit.edu/use-our-efficient-false-belief-localizer (no license), spatialtopology/calibrate (MIT), spatialtopology/task-alignvideo (MIT), spatialtopology/fractional_factorials (no license), spatialtopology/spacetop-prep (MIT), spatialtopology (no license), spatialtopology/alignvideos (MIT), spatialtopology/social_influence (no license), spatialtopology/task-faces (no license), spatialtopology/narratives (no license), spatialtopology/shortvideos (MIT), Zenodo 4390433 (other-open), Zenodo 10607992 (CC-BY-4.0), repronim/containers (Apache-2.0), nipy/heudiconv (Apache-2.0), spunt/whyhowlocalizer (no license)

Status: code verified, 496 files readable, 30 matches

[13803] doi:10.1038/s41598-025-10511-2 [paper, repository]

Use of computer vision analysis for labeling inattention periods in EEG recordings with visual stimuli.

Journal: Scientific reports

Authors' code: dyisaev/eeg-cva-model-training (no license), dyisaev/eeg-cva-feature-extraction (no license), dyisaev/eeg-cva-visualization-tool (no license)

Status: code verified, 22 files readable, 3 matches

[13804] doi:10.1038/s41598-025-14180-z [paper, repository]

Delirium as a mediating factor in the survival benefits of dexmedetomidine in acute brain injury management.

Journal: Scientific reports

Authors' code: MIT-LCP/mimic-iv (MIT)

Status: code verified, 8 files readable

[13805] doi:10.1038/s41598-025-16841-5 [paper, repository]

Cross-language priming effects in bilingual novel metaphor processing.

Journal: Scientific reports

Authors' code: OSF vkag6 (no license)

Status: empty repository

[13806] doi:10.1038/s42003-025-08706-4 [paper, repository]

Evidence for compositionality in fMRI visual representations via Brain Algebra.

Journal: Communications biology

Authors' code: matteoferrante/BrainAlgebra (no license)

Status: code verified, 135 files readable, 6 matches

[13807] doi:10.1038/s44294-025-00097-5 [paper]

Early pubertal timing is a risk factor for adolescent dysmenorrhea.

Journal: npj women's health

Status: code on request

[13808] doi:10.1073/pnas.2503535122 [paper, repository]

Hippocampal mismatch signals are based on episodic memories and not schematic knowledge.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF p6z2g (no license), identifiers.org/neurovault.collection:19061 (no license)

Status: code verified, 1 file readable

[13809] doi:10.1073/pnas.2507516122 [paper, repository]

Replay in the human visual cortex during brief task pauses is linked to implicit learning of successor representations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: lnnrtwttkhn/zoo-analysis (no license), lnnrtwttkhn/zoo-modeling (no license), lnnrtwttkhn/zoo-illustration (no license)

Status: code verified, 47 files readable, 11 matches

[13810] doi:10.1080/07853890.2025.2548388 [paper, data]

Predicting acupuncture efficacy for neck pain based on functional connectivity features: a machine learning study.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[13811] doi:10.1101/2025.08.20.671248 [paper, repository]

Synaptic high-frequency jumping synchronises vision to high-speed behaviour

Journal: bioRxiv (preprint)

Authors' code: JuusolaLab/High-frequency-jumping (GPL-3.0), JuusolaLab (no license)

Status: code verified, 20 files readable, 1 match

[13812] doi:10.1126/sciadv.adu2708 [paper, repository]

Understanding monocyte-driven neuroinflammation in Alzheimer's disease using human cortical organoid microphysiological systems.

Journal: Science advances

Authors' code: satijalab.org/seurat/articles (no license)

Status: code verified

[13813] doi:10.1162/imag.a.104 [paper, repository]

Distributed and gradual microstructure changes are associated with the emergence of behavioural benefit from memory reactivation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF b52fv (no license)

Status: code verified, 12 files readable, 1 match

[13814] doi:10.1186/s13229-025-00669-x [paper, repository]

Social inference brain networks in autistic adults during movie-viewing: functional specialization and heterogeneity.

Journal: Molecular autism

Authors' code: adolphslab/rsDenoise (no license), research-git.uiowa.edu/scnlabp/avp_pc (no license)

Status: code verified, 11 files readable, 2 matches

[13815] doi:10.1371/journal.pone.0328736 [paper, repository]

Multiplex nodal modularity: A novel network metric for the regional analysis of amnestic mild cognitive impairment during a working memory binding task.

Journal: PloS one

Authors' code: AvalonC-C/Nodal_Modularity (MIT)

Status: code verified, 3 files readable, 1 match

[13816] doi:10.3389/fgene.2025.1606923 [paper, data]

Japanese attitudes toward cell donation in human brain organoid research: many oppose broad consent.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[13817] doi:10.3389/fmicb.2025.1580231 [paper, data]

Alterations in gut microbiota and metabolomic profiles in acute stroke: insights into brain-gut axis dysregulation.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[13818] doi:10.3389/fmicb.2025.1640149 [paper, data]

The gut commensal <i>Faecalibacterium hominis</i> attenuates indole-AhR signaling and restores ASD-like behaviors with BTBR mice.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[13819] doi:10.3389/fnins.2025.1622760 [paper, data]

Exploring ischemic stroke based on the ferroptosis perspective: ECH1 may serve as a new biomarker and therapeutic target.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[13820] doi:10.3389/fnmol.2025.1605012 [paper, data]

Organelle stresses and energetic metabolisms promote endothelial-to-mesenchymal transition and fibrosis via upregulating FOSB and MEOX1 in Alzheimer's disease.

Journal: Frontiers in molecular neuroscience

Status: data only, 2 datasets cited

[13821] doi:10.3390/ijms26178121 [paper]

Abscopal Brain Proteomic Changes Associated with Microbiome Alterations Induced by Gastrointestinal Acute Radiation Syndrome in Swine.

Journal: International journal of molecular sciences

Status: data only

[13822] doi:10.7150/jca.117209 [paper]

Robust machine-learning based prognostic index using fatty acid metabolism genes predicts prognosis and therapy responses in glioblastoma.

Journal: Journal of Cancer

Status: data only

[13823] doi:10.7150/thno.112661 [paper, data]

Alisol A ameliorates vascular cognitive impairment via AMPK/NAMPT/SIRT1-mediated regulation of cholesterol and autophagy.

Journal: Theranostics

Status: data only, 1 dataset cited

Thursday, 21 August 2025 (33 papers)

[13824] doi:10.1007/s00406-025-02087-9 [paper, data]

Dissociating prefrontal contribution to reactive and proactive aggression: a transcranial direct current stimulation study.

Journal: European archives of psychiatry and clinical neuroscience

Status: data only, 1 dataset cited

[13825] doi:10.1007/s00429-025-02988-4 [paper, repository]

Multi-centre normative brain mapping of intracranial EEG lifespan patterns in the human brain.

Journal: Brain structure & function

Authors' code: H-Woodhouse/norm-ieeg-age-sex-hospital (no license)

Status: code verified, 11 files readable, 10 matches

[13826] doi:10.1016/j.apsb.2025.08.015 [paper, data]

New insights into translational research in Alzheimer's disease guided by artificial intelligence, computational and systems biology.

Journal: Acta pharmaceutica Sinica. B

Status: data only, 1 dataset cited

[13827] doi:10.1016/j.isci.2025.113388 [paper, repository]

A familial natural short sleep mutation in <i>dec2</i> extends healthspan and lifespan in <i>Drosophila</i>.

Journal: iScience

Authors' code: pkerrwall/rnaseq_pipeline (GPL-3.0), pkerrwall/FlySleepAnalyzer (no license), FelixKrueger/TrimGalore (GPL-3.0), marcelm/cutadapt (MIT)

Status: code verified, 86 files readable, 1 match

[13828] doi:10.1016/j.isci.2025.113413 [paper, repository]

Two- and three-dimensional neuropeptidomic landscape in the central nervous system of an invertebrate chordate, <i>Ciona robusta</i>.

Journal: iScience

Authors' code: AS-sunbor/Imaging-MS-programs (no license), Zenodo 7297174 (CC-BY-4.0)

Status: code verified, 13 files readable, 2 matches

[13829] doi:10.1016/j.nbas.2025.100150 [paper, repository]

Advanced brain aging mediates the relationship between cardiovascular health and aphasia severity in chronic stroke.

Journal: Aging brain

Authors' code: neurolabusc/nii_preprocess (no license), james-cole/brainageR (LGPL-3.0), Zenodo 4027711 (other-open), rogiedodgie/nii_preprocess (no license)

Status: code verified, 304 files readable, 10 matches

[13830] doi:10.1016/j.nicl.2025.103864 [paper, data]

Advanced neuroimaging techniques to decipher brain connectivity networks in patients with disorder of consciousness: a narrative review.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[13831] doi:10.1016/j.stemcr.2025.102606 [paper, repository]

Computationally resolved neuroprogenitor cell biomarkers associate with human disorders.

Journal: Stem cell reports

Authors' code: geri86Ale/DSA-framework (no license), zhandong/DSA (no license)

Status: code verified, 3 files readable

[13832] doi:10.1038/s41398-025-03513-1 [paper]

A common neural signature between genetic and environmental risk for mental illness.

Journal: Translational psychiatry

Status: code on request

[13833] doi:10.1038/s41467-025-63029-6 [paper, repository]

Novel environment exposure drives temporally defined and region-specific chromatin accessibility and gene expression changes in the hippocampus.

Journal: Nature communications

Authors' code: skruettn/traunmueller_et_al._2025 (no license), Zenodo 15997560 (CC-BY-4.0)

Status: code verified, 1 file readable

[13834] doi:10.1038/s41467-025-63131-9 [paper, repository]

Prefrontal cortex astrocytes modulate distinct neuronal populations to control anxiety-like behavior.

Journal: Nature communications

Authors' code: YuGliaLab/astrocyteanxiety (no license)

Status: code verified, 2 files readable, 2 matches

[13835] doi:10.1038/s41531-025-01104-x [paper, repository]

Association between anxiety disorder, anxiolytic drugs, and risk of incident Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: tenayatherapeutics/Genetic-Survival-Analysis-in-UKB (no license), yochaiedlitz/T2DM_UKB_predictions (no license)

Status: dead link

[13836] doi:10.1038/s41539-025-00353-y [paper]

Note-by-note predictability modulates rhythm learning and its neural components.

Journal: NPJ science of learning

Status: code on request

[13837] doi:10.1038/s41591-025-03884-4 [paper, repository]

Perioperative IDH inhibition in treatment-naive IDH-mutant glioma: a pilot trial.

Journal: Nature medicine

Authors' code: MontanaSpiteri/AnHeart (no license)

Status: code verified, 36 files readable, 40 matches

[13838] doi:10.1038/s41593-025-02037-7 [paper, repository]

Stable cortical body maps before and after arm amputation.

Journal: Nature neuroscience

Authors' code: hunterschone/longitudinal-amputation (GPL-3.0)

Status: code verified, 3 files readable

[13839] doi:10.1038/s41598-025-12636-w [paper, data]

Automated detection of Parkinson's disease using improved linknet-ghostnet model based on handwriting images.

Journal: Scientific reports

Status: data only, 1 dataset cited

[13840] doi:10.1038/s42003-025-08701-9 [paper, data]

An Elongator mouse model of ALS spotlights TDP-43 in the motor neuron nucleolus.

Journal: Communications biology

Status: data only, 1 dataset cited

[13841] doi:10.1093/braincomms/fcaf307 [paper, repository]

Detection of cognitive deficits years prior to clinical diagnosis across neurological conditions.

Journal: Brain communications

Authors' code: OSF vmabg (no license)

Status: code verified, 98 files readable

[13842] doi:10.1126/science.adx4142 [paper, data]

Dysfunction in primate dorsolateral prefrontal area 46 affects motivation and anxiety.

Journal: Science (New York, N.Y.)

Status: data only, 1 dataset cited

[13843] doi:10.1128/aem.00891-25 [paper, repository]

Serotonergic and immunomodulatory properties of the psychobiotic candidate <i>Bacteroides finegoldii</i> UO.H1052 and its extracellular vesicles.

Journal: Applied and environmental microbiology

Authors' code: tseemann/ABRicate (GPL-2.0)

Status: code verified, 3 files readable

[13844] doi:10.1162/imag.a.118 [paper, repository]

The effect of spherical projection on spin tests for brain maps.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: netneurolab/bazinet_spins (BSD-3-Clause)

Status: code verified, 4 files readable, 3 matches

[13845] doi:10.1172/jci185602 [paper, repository]

Ppp2r1a haploinsufficiency increases excitatory synaptic transmission and decreases spatial learning by impairing endocannabinoid signaling.

Journal: The Journal of clinical investigation

Authors' code: ngdc.cncb.ac.cn/gsa (no license)

Status: code verified

[13846] doi:10.1177/02698811251360745 [paper, data]

Acute cannabidiol (CBD), tetrahydrocannabinol (THC) and their mixture (THC:CBD) exert differential effects on brain activity and blood flow in rats: A translational neuroimaging study.

Journal: Journal of psychopharmacology (Oxford, England)

Status: data only, 1 dataset cited

[13847] doi:10.1186/s12864-025-11946-7 [paper, repository]

GNODEVAE: a graph-based ODE-VAE enhances clustering for single-cell data.

Journal: BMC genomics

Authors' code: PeterPonyu/GNODEVAE (MIT), Zenodo 15826043 (MIT)

Status: code verified, 205 files readable, 21 matches

[13848] doi:10.1186/s13104-025-07440-8 [paper, repository]

Computer identification of Notch3 in the neurogenic progenitor cells of mammalian early optic vesicles.

Journal: BMC research notes

Authors' code: Zenodo 15876358 (BSD-3-Clause), yoshitokky/notch3_retina_software (BSD-3-Clause)

Status: code verified, 14 files readable, 3 matches

[13849] doi:10.1186/s13229-025-00678-w [paper, repository]

Locus coeruleus tonic upregulation increases selectivity to inconspicuous auditory information in autistic compared to non-autistic individuals: a combined pupillometry and electroencephalography study.

Journal: Molecular autism

Authors' code: nicobast/oddball_LEAP (no license)

Status: code verified, 19 files readable, 18 matches

[13850] doi:10.1371/journal.pcbi.1013335 [paper, repository]

Decoding decision-making behavior from sparse neural spiking activity.

Journal: PLoS computational biology

Authors' code: zhangyh321/ca-bilstm (no license)

Status: empty repository, 1 file readable

[13851] doi:10.1371/journal.pone.0314346 [paper, data]

Violet light could improve sleep quality and blood glucose levels in healthy individuals: A pilot study.

Journal: PloS one

Status: data only, 1 dataset cited

[13852] doi:10.3389/fimmu.2025.1579045 [paper, data]

Discovery and early validation of serum protein signatures in untreated multiple sclerosis patients: identification of candidate biomarkers for diagnosis and stratification.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[13853] doi:10.3389/fnhum.2025.1603888 [paper, data]

Dynamic brain network reconfiguration following rTMS in males with cocaine use disorder.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[13854] doi:10.3389/fphys.2025.1640735 [paper]

Fu's subcutaneous needling facilitates muscle repair by regulating mitochondrial homeostasis in rat with chronic peripheral nervous pain.

Journal: Frontiers in physiology

Status: data only

[13855] doi:10.3389/fpubh.2025.1630294 [paper, repository]

Transcriptional and neurotransmitter signatures of cerebral spontaneous neural activity in nurses with burnout.

Journal: Frontiers in public health

Authors' code: murraylab/brainsmash (GPL-3.0), juryxy/JuSpace (no license)

Status: code verified, 41 files readable, 4 matches

[13856] doi:10.3390/biomimetics10080554 [paper, repository]

Enhanced SSVEP Bionic Spelling via xLSTM-Based Deep Learning with Spatial Attention and Filter Bank Techniques.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: dlyres/SED-xLSTM (no license)

Status: code verified, 28 files readable, 4 matches

Wednesday, 20 August 2025 (48 papers, 32 on this page)

[13857] doi:10.1007/s00359-025-01755-4 [paper, repository]

Neural bottlenecks: axon count, distribution, and conduction in the Manduca sexta neck connective.

Journal: Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology

Authors' code: LeoJW/JCPA2025 (no license)

Status: dead link

[13858] doi:10.1016/j.crmeth.2025.101141 [paper, repository]

Spatial dissimilarity analysis in single-cell transcriptomics.

Journal: Cell reports methods

Authors' code: shiquan/Yano (MIT), shiquan/Yano_paper (no license), shiquan/PISA (MIT), Zenodo 15857280 (CC-BY-4.0), lh3/bwa (GPL-3.0), huangyh09/brie (Apache-2.0), immunogenomics/harmony (no license)

Status: code verified, 573 files readable, 26 matches

[13859] doi:10.1016/j.isci.2025.113389 [paper, repository]

Single nuclei transcriptomics reveals cellular diversity in TSC subependymal giant cell astrocytomas.

Journal: iScience

Authors' code: vshanka23/tsc_human_scrna_feliciano (no license)

Status: code verified, 4 files readable

[13860] doi:10.1016/j.isci.2025.113393 [paper, repository]

Biophysical modeling of thalamic reticular nucleus subpopulations and their differential contribution to spindle dynamics.

Journal: iScience

Authors' code: Zenodo 15055541 (CC-BY-4.0), Zenodo 8269363 (CC-BY-4.0), Zenodo 8136124 (other-open), BlueBrain/Neurodamus (Apache-2.0), bluebrain/bluepyopt (GPL-3.0), bluebrain/emodel-generalisation (CC-BY-4.0)

Status: code verified, 718 files readable, 8 matches

[13861] doi:10.1038/s41380-025-03170-2 [paper, repository]

De novo protein-coding gene variants in developmental stuttering.

Journal: Molecular psychiatry

Authors' code: IHG-MRI/EVAdb (MIT), gitlab.gwdg.de/else.eising/trio-stuttering-wes (no license)

Status: code verified, 298 files readable, 8 matches

[13862] doi:10.1038/s41392-025-02354-0 [paper, data]

F-box/LRR-repeat protein 12 reorchestrated microglia to inhibit scarring and achieve adult spinal cord injury repair.

Journal: Signal transduction and targeted therapy

Status: data only, 1 dataset cited

[13863] doi:10.1038/s41467-025-62637-6 [paper, repository]

Non-genetic neuromodulation with graphene optoelectronic actuators for disease models, stem cell maturation, and biohybrid robotics.

Journal: Nature communications

Authors' code: MarianaSac/Graphene (no license), asavtchenko21/GraMOS (no license), Omowuyi/Organoid-Robot-Control (CC0-1.0)

Status: code verified, 5 files readable

[13864] doi:10.1038/s41467-025-62938-w [paper, repository]

Designed optogenetic tool for bridging single-neuronal multimodal information in intact animals.

Journal: Nature communications

Authors' code: kejiiii/fiqa (no license)

Status: code verified, 7 files readable

[13865] doi:10.1038/s41586-025-09326-y [paper, data]

SLC45A4 is a pain gene encoding a neuronal polyamine transporter.

Journal: Nature

Status: data only, 8 datasets cited

[13866] doi:10.1038/s41586-025-09370-8 [paper, data]

Cancer-induced nerve injury promotes resistance to anti-PD-1 therapy.

Journal: Nature

Status: data only, 1 dataset cited

[13867] doi:10.1038/s41586-025-09376-2 [paper, repository]

Network synchrony creates neural filters promoting quiescence in Drosophila.

Journal: Nature

Authors' code: LauraKrumm/-R5-Helicon-Neural-Simulation (MIT), DavideR2020/NOSA (MIT), connectome-neuprint/neuprint-python (BSD-3-Clause), navis-org/navis (GPL-3.0)

Status: code verified, 398 files readable, 5 matches

[13868] doi:10.1038/s41586-025-09411-2 [paper, repository]

Axonal injury is a targetable driver of glioblastoma progression.

Journal: Nature

Authors' code: WT215/Axonal-Injury (no license), Zenodo 15608353 (CC-BY-4.0), Zenodo 22040374 (MIT)

Status: code verified, 40 files readable, 10 matches

[13869] doi:10.1038/s41591-025-03901-6 [paper, repository]

AI-driven reclassification of multiple sclerosis progression.

Journal: Nature medicine

Authors' code: habib61/FAHMM (CC-BY-NC-SA-4.0)

Status: code verified, 7 files readable, 4 matches

[13870] doi:10.1038/s41597-025-05767-2 [paper, data]

Enhancing classification of a large lower-limb motor imagery EEG dataset for BCI in knee pain patients.

Journal: Scientific data

Status: data only, 2 datasets cited

[13871] doi:10.1038/s41598-025-08266-x [paper, data]

Sex differences in the lateralization of sustained electrophysiological response to 40 Hz clicks in typically developing preschoolers.

Journal: Scientific reports

Status: data only, 1 dataset cited

[13872] doi:10.1038/s41598-025-10104-z [paper]

Machine learning-based prediction model for post-stroke cerebral-cardiac syndrome: a risk stratification study.

Journal: Scientific reports

Status: code on request

[13873] doi:10.1038/s41598-025-10739-y [paper, data]

Dexamethasone-eluting cochlear implants reduce inflammation and foreign body response in human and murine cochleae.

Journal: Scientific reports

Status: data only, 1 dataset cited

[13874] doi:10.1038/s41598-025-15842-8 [paper, data]

Temporal fluctuation in lateral ventricle volume and its coupling with CSF inflow and global BOLD signal.

Journal: Scientific reports

Status: data only, 3 datasets cited

[13875] doi:10.1038/s41598-025-16043-z [paper, data]

Real time wire rope detection method based on Rockchip RK3588.

Journal: Scientific reports

Status: data only, 1 dataset cited

[13876] doi:10.1038/s42003-025-08577-9 [paper, repository]

Changes in brain connectivity and neurovascular dynamics during dexmedetomidine-induced loss of consciousness.

Journal: Communications biology

Authors' code: smweinst/spice_test (no license)

Status: code verified, 5 files readable

[13877] doi:10.1038/s43856-025-01042-y [paper]

Computer vision detects covert voluntary facial movements in unresponsive brain injury patients.

Journal: Communications medicine

Status: code on request

[13878] doi:10.1038/s44319-025-00555-w [paper, data]

The NuRD component CHD3 promotes BMP signalling during cranial neural crest cell specification.

Journal: EMBO reports

Status: data only, 1 dataset cited

[13879] doi:10.1073/pnas.2420793122 [paper, data]

Macrophage TBK1 signaling drives the development and outgrowth of breast cancer brain metastasis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[13880] doi:10.1073/pnas.2509860122 [paper, repository]

Efficiently quantifying dependence in massive scientific datasets using InterDependence Scores.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: aradha/interdependence_scores (MIT)

Status: code verified, 7 files readable, 1 match

[13881] doi:10.1091/mbc.e25-07-0346 [paper, data]

The hereditary spastic paraplegia type 21 (SPG21) protein is a RAB7A effector that promotes noncanonical mTORC1-catalyzed TFEB phosphorylation and cytoplasmic retention.

Journal: Molecular biology of the cell

Status: data only, 1 dataset cited

[13882] doi:10.1098/rsos.242217 [paper, repository]

Juvenile hormone regulates the maturation of sexually dimorphic naive ethanol olfactory preference in <i>Drosophila melanogaster</i>.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7986634 (no license)

Status: code found, still to be checked

[13883] doi:10.1098/rsos.250491 [paper, repository]

A mathematical model of human oesophageal motility function.

Journal: Royal Society open science

Authors' code: miuraTakashi/EsophagealPeristalsisModel (GPL-3.0), Zenodo 15854411 (GPL-3.0), doi:10.6084/m9.figshare.c.7953936 (no license)

Status: code verified, 8 files readable, 5 matches

[13884] doi:10.1101/2025.08.19.670030 [paper, data]

Low-dimensional brain-symptom associations delineate depression phenotypes with distinct connectivity biomarkers and symptom profiles

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[13885] doi:10.1162/imag.a.114 [paper, repository]

CICADA: An automated and flexible tool for comprehensive fMRI noise reduction.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: keithcdodd/CICADA (GPL-3.0)

Status: code verified, 73 files readable, 22 matches

[13886] doi:10.1162/imag.a.115 [paper, repository]

High resolution diffusion tensor imaging of the human cortex reveals non-linear trajectories over the healthy lifespan.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: grahamlittlephd/MicroBrain (no license)

Status: code verified, 20 files readable, 4 matches

[13887] doi:10.1162/imag.a.119 [paper, repository]

Cortical travelling waves relate to variation in personality traits.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF dn4th (no license)

Status: code verified, 2 files readable, 1 match

[13888] doi:10.1177/0271678x251369257 [paper, repository]

Small vessel dysfunction at 7T MRI locally predicts white matter damage progression in CADASIL.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: miac-research/psmd (BSD-3-Clause)

Status: code verified, 3 files readable, 2 matches

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