Every paper, by date: page 60

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 60 of 200: 9 September 2025 to 1 September 2025.

Tuesday, 9 September 2025 (29 papers, 21 on this page)

[13217] doi:10.1038/s44318-025-00560-8 [paper, repository]

Nuclear paxillin functions as a molecular switch for alternative splicing in neurons during a critical period of brain development.

Journal: The EMBO journal

Authors' code: denisecailab/ezTrack (GPL-3.0)

Status: code verified, 9 files readable

[13218] doi:10.1044/2025_aja-25-00025 [paper, data]

Age-Related Hearing Decline and Resting-State Networks.

Journal: American journal of audiology

Status: data only, 1 dataset cited

[13219] doi:10.1073/pnas.2423682122 [paper, data]

Modeling human retinal ganglion cell axonal outgrowth, development, and pathology using pluripotent stem cell-based microfluidic platforms.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[13220] doi:10.1073/pnas.2501118122 [paper, data]

Excitatory glycine receptors control ventral hippocampus synaptic plasticity and anxiety-related behaviors.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 3 datasets cited

[13221] doi:10.1073/pnas.2510642122 [paper, repository]

Spontaneous glutamate release activates mGluR signaling to drive rapid antidepressant responses.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: claramccarthy1/GCaMP8s_event_analysis (GPL-3.0)

Status: empty repository, 1 file readable

[13222] doi:10.1093/braincomms/fcaf339 [paper, repository]

Reduced beta bursting underpins loss of corticomuscular coherence in amyotrophic lateral sclerosis.

Journal: Brain communications

Authors' code: mtrubshaw1/Yoganathan_2025_CMC_ALS_task (no license)

Status: code verified, 47 files readable, 14 matches

[13223] doi:10.1093/pnasnexus/pgaf288 [paper, data]

Unveiling the relationship between aesthetic experiences and attention through a cross-experiment validation of their processing biomarkers.

Journal: PNAS nexus

Status: data only, 2 datasets cited

[13224] doi:10.1162/imag.a.142 [paper, data]

Real-time fMRI neurofeedback boosts heartbeat perception by modulating insula activation pattern during interoceptive attention.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[13225] doi:10.1162/imag.a.98 [paper, repository]

EPISeg: Automated segmentation of the spinal cord on echo planar images using open-access multi-center data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sct-pipeline/fmri-segmentation (MIT)

Status: code verified, 11 files readable, 4 matches

[13226] doi:10.1162/opmi.a.28 [paper, data]

Semantic Anchors Facilitate Task Encoding in Continual Learning.

Journal: Open mind : discoveries in cognitive science

Status: data only, 1 dataset cited

[13227] doi:10.1172/jci.insight.192835 [paper, data]

Prenatal SMN-dependent defects in translation uncover reversible primary cilia phenotypes in spinal muscular atrophy.

Journal: JCI insight

Status: data only, 1 dataset cited

[13228] doi:10.1186/s13059-025-03709-0 [paper, repository]

Patterns of extreme outlier gene expression suggest an edge of chaos effect in transcriptomic networks.

Journal: Genome biology

Authors' code: cxiepku/outlier (MIT), Zenodo 15815965 (CC-BY-4.0)

Status: code verified, 5 files readable

[13229] doi:10.1186/s13195-025-01849-w [paper, data]

Intestinal epithelial Dicer1 regulates gut microbiome and Alzheimer's pathology in App-knock-in mice.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[13230] doi:10.1371/journal.pcbi.1013471 [paper, repository]

EFMouse: A toolbox to model stimulation-induced electric fields in the mouse brain.

Journal: PLoS computational biology

Authors' code: klabhub/EFMouse (MIT)

Status: code verified, 52 files readable, 1 match

[13231] doi:10.3389/fcimb.2025.1651581 [paper]

The effect of <i>Ganqichengpi</i> syndrome diarrhea and <i>Tongxie Yaofang</i> intervention on the intestinal mucosal microbiota and neurochemical substances.

Journal: Frontiers in cellular and infection microbiology

Status: data only

[13232] doi:10.3389/fnhum.2025.1636726 [paper, data]

Social and non-social directional cues differentially orient attention by learned habit.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[13233] doi:10.3389/fnins.2025.1618804 [paper, repository]

FX ENTRAIN: scientific context, study design, and biomarker driven brain-computer interfaces in neurodevelopmental conditions.

Journal: Frontiers in neuroscience

Authors' code: cincibrainlab (no license)

Status: code verified

[13234] doi:10.3389/fnins.2025.1623380 [paper, repository]

Convolutional neural networks decode finger movements in motor sequence learning from MEG data.

Journal: Frontiers in neuroscience

Authors' code: 1101AlexZab1011/FingerMovementDecoder (MIT)

Status: code verified, 30 files readable

[13235] doi:10.3390/ijms26188770 [paper, repository]

NeuroDecon: A Neural Network-Based Method for Three-Dimensional Deconvolution of Fluorescent Microscopic Images.

Journal: International journal of molecular sciences

Authors' code: AiviaCommunity/3D-RCAN (CC-BY-NC-4.0), gerasimenkoab/simple-PSF (no license), Biomed-imaging-lab/NeuroDecon (no license)

Status: code verified, 61 files readable, 4 matches

[13236] doi:10.5409/wjcp.v14.i3.103590 [paper]

Prematurity is a risk factor of disorders of gut-brain interaction in adults: A case-control study.

Journal: World journal of clinical pediatrics

Status: code on request

[13237] doi:10.7554/elife.100217 [paper, data]

Endothelin B receptor inhibition rescues aging-dependent neuronal regenerative decline.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 8 September 2025 (29 papers)

[13238] doi:10.1002/advs.202416085 [paper, repository]

Conductive Nanocomposite Hydrogels for Neural Tissue Engineering: A Systematic Scoping Review of Recent Trends.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: OSF dh4px (no license)

Status: empty repository

[13239] doi:10.1002/mrm.70070 [paper, repository]

Optimized reconstruction of undersampled Dixon sequences using new memory-efficient unrolled deep neural networks: HalfVarNet and HalfDIRCN.

Journal: Magnetic resonance in medicine

Authors' code: sandra_martin/half_public (no license)

Status: empty repository, 1 file readable

[13240] doi:10.1016/j.bpsgos.2025.100606 [paper, data]

Cortical GABAergic Neuron Dysregulation in Schizophrenia Is Age Dependent.

Journal: Biological psychiatry global open science

Status: data only, 2 datasets cited

[13241] doi:10.1016/j.celrep.2025.116217 [paper, data]

Cortical versus hippocampal network dysfunction in a human brain assembloid model of epilepsy and intellectual disability.

Journal: Cell reports

Status: data only, 2 datasets cited

[13242] doi:10.1016/j.dcn.2025.101611 [paper, data]

Age-related patterns of resting EEG power in infancy: Associations with prenatal socioeconomic disadvantage.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[13243] doi:10.1016/j.mex.2025.103613 [paper, data]

From scores to insights: Predicting MT errors using reliable metrics and linguistic typology in slavic languages.

Journal: MethodsX

Status: data only, 1 dataset cited

[13244] doi:10.1016/j.nbd.2025.107093 [paper, data]

Excitatory cortical neurons from CDKL5 deficiency disorder patient-derived organoids show early hyperexcitability not identified in neurogenin2 induced neurons.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[13245] doi:10.1021/acs.analchem.5c02946 [paper, repository]

De-MSI: A Deep Learning-Based Data Denoising Method to Enhance Mass Spectrometry Imaging by Leveraging the Chemical Prior Knowledge.

Journal: Analytical chemistry

Authors' code: gankLei-X/De-MSI (no license)

Status: code verified, 5 files readable, 1 match

[13246] doi:10.1038/s41386-025-02219-8 [paper]

Chronic treatment with fluoxetine regulates mitochondrial features and plasticity-associated transcriptomic pathways in parvalbumin-positive interneurons of prefrontal cortex.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: code on request

[13247] doi:10.1038/s41556-025-01735-5 [paper, repository]

RNA-binding proteins mediate the maturation of chromatin topology during differentiation.

Journal: Nature cell biology

Authors' code: ctcfdevloops.nencki.edu.pl (no license)

Status: code verified

[13248] doi:10.1038/s41588-025-02291-2 [paper, repository]

Multiancestry brain pQTL fine-mapping and integration with genome-wide association studies of 21 neurologic and psychiatric conditions.

Journal: Nature genetics

Authors' code: Zenodo 15826233 (CC-BY-4.0), Zenodo 15826249 (GPL-3.0), wingolab-org/multi-ancestry_brain_pqtl (no license), wingolab-org/pecaller (GPL-3.0)

Status: code verified, 54 files readable

[13249] doi:10.1038/s41592-025-02798-w [paper, repository]

WISDEM: a hybrid wireless integrated sensing detector for simultaneous EEG and MRI.

Journal: Nature methods

Authors' code: codeocean:6663434 (no license)

Status: code found, still to be checked

[13250] doi:10.1038/s44321-025-00302-7 [paper, repository]

CETN3 deficiency induces microcephaly by disrupting neural stem/progenitor cell fate through impaired centrosome assembly and RNA splicing.

Journal: EMBO molecular medicine

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[13251] doi:10.1038/s44321-025-00303-6 [paper]

Identification of p38 MAPK inhibition as a neuroprotective strategy for combinatorial SMA therapy.

Journal: EMBO molecular medicine

Status: data only

[13252] doi:10.1073/pnas.2500116122 [paper, data]

Microglia contribute to bipolar depression through Serinc2-dependent phospholipid synthesis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[13253] doi:10.1073/pnas.2508783122 [paper, repository]

Female membrane proteins regulate postmating ovulation in <i>Drosophila melanogaster</i> by ovulin-dependent and -independent pathways.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: sokrypton/colabfold (MIT)

Status: code verified, 74 files readable, 2 matches

[13254] doi:10.1073/pnas.2516103122 [paper, data]

Microglia-to-neuron signaling links <i>APOE4</i> and inflammation to enhanced neuronal lipid metabolism and network activity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[13255] doi:10.1128/mra.00503-25 [paper, data]

Complete genome of <i>Lactococcus lactis</i> isolate S11-599 from the brain of a silver carp (<i>Hypophthalmichthys molitrix</i>) during a mass mortality event in the Mississippi river.

Journal: Microbiology resource announcements

Status: data only, 3 datasets cited

[13256] doi:10.1152/ajpregu.00071.2025 [paper, repository]

Experience-mediated transcriptional memory correlates with hypoxia resistance in the nervous system of the sea hare <i>Aplysia californica</i>.

Journal: American journal of physiology. Regulatory, integrative and comparative physiology

Authors' code: jarcasariego/AplCal_hypoxia (no license), Zenodo 16111731 (CC-BY-4.0)

Status: code verified, 135 files readable, 12 matches

[13257] doi:10.1162/imag.a.137 [paper, repository]

Detecting mild traumatic brain injury with MEG scan data: One-vs-K-sample tests.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: zhangjsib/OKtests (no license)

Status: empty repository, 1 file readable

[13258] doi:10.1177/0271678x251370831 [paper, repository]

A unified approach for identifying PET-based neuronal activation and molecular connectivity with the functional PET toolbox.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: NeuroimagingLabsMUV/fPET-toolbox (GPL-2.0)

Status: code verified, 95 files readable, 6 matches

[13259] doi:10.1186/s13195-025-01835-2 [paper, data]

Structural brain improvements following individually tailored serious exergame-based training in mild neurocognitive disorders: exploratory randomized controlled trial.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[13260] doi:10.1371/journal.pcbi.1013269 [paper, repository]

Understanding thromboembolus transport patterns in the brain for stroke in the presence of carotid artery stenosis.

Journal: PLoS computational biology

Authors' code: shaddenlab.berkeley.edu/software.html (no license)

Status: code verified

[13261] doi:10.1371/journal.pcbi.1013282 [paper, repository]

Microtubule-based nucleation results in a large sensitivity to cell geometry of the plant cortical array.

Journal: PLoS computational biology

Authors' code: corticalsim/corticalsim (MPL-2.0), Zenodo 16282498 (MPL-2.0), Zenodo 801852 (MPL-2.0), Zenodo 16282497 (MPL-2.0)

Status: code verified, 68 files readable, 5 matches

[13262] doi:10.1371/journal.pdig.0001005 [paper, data]

Evaluating the predictive accuracy of cognitive screeners BAMCOG and MoCA in identifying postoperative delirium risk in aortic valve replacement patients: A cohort study.

Journal: PLOS digital health

Status: data only, 2 datasets cited

[13263] doi:10.1523/eneuro.0589-24.2025 [paper, repository]

Selective Targeting of a Defined Subpopulation of Corticospinal Neurons Using a Novel Klhl14-Cre Mouse Line Enables Molecular and Anatomical Investigations through Development into Maturity.

Journal: eNeuro

Authors' code: jkaiser87/VOL3D (no license), petersaj/AP_histology (GPL-3.0), vsnnlab/AMaSiNe (no license), jkaiser87/CELL3D (no license)

Status: code verified, 55 files readable, 1 match

[13264] doi:10.3389/fgene.2025.1646991 [paper]

Comprehensive analysis and validation of angiogenesis in vascular dementia from the perspective of diagnosis, prevention, and treatment.

Journal: Frontiers in genetics

Status: data only

[13265] doi:10.3389/fphar.2025.1642515 [paper, data]

<i>Hemerocallis citrina</i> Baroni leaf total phenol alleviates depressive-like behaviors via modulating "microbiota-gut-brain" axis in chronic unpredictable mild stress -induced rats.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[13266] doi:10.7554/elife.104041 [paper, repository]

Preparatory attentional templates in prefrontal and sensory cortex encode target-associated information.

Journal: eLife

Authors' code: OSF xw8hm (no license)

Status: code verified, 2 files readable, 2 matches

Sunday, 7 September 2025 (3 papers)

[13267] doi:10.1016/j.isci.2025.113525 [paper, repository]

An extension module for a two-photon microscope enables flexible <i>in vivo</i> imaging and all-optical physiology.

Journal: iScience

Authors' code: rysk-t/ex2p (MIT), Zenodo 15392791 (MIT)

Status: code verified, 4 files readable

[13268] doi:10.1016/j.xpro.2025.104068 [paper]

Protocol for live-cell calcium imaging of human lung microvascular endothelial vessel-on-a-chip model.

Journal: STAR protocols

Status: code on request

[13269] doi:10.3390/cimb47090727 [paper, data]

Transcriptomic Analysis Reveals the Molecular Relationship Between Common Respiratory Infections and Parkinson's Disease.

Journal: Current issues in molecular biology

Status: data only, 1 dataset cited

Saturday, 6 September 2025 (8 papers)

[13270] doi:10.1002/mco2.70368 [paper, data]

Targeting the miR-96-5p/Cathepsin B Pathway to Alleviate Neuron-Derived Neuroinflammation in Alzheimer's Disease.

Journal: MedComm

Status: data only, 1 dataset cited

[13271] doi:10.1002/mds.70031 [paper, repository]

Cortical and Corticomuscular Beta-Gamma Phase-Amplitude Coupling During Different Locomotion States and the Effects of Levodopa in Parkinson's Disease.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: hyphenzhao/PD_PAC_Biomarkers (no license)

Status: code verified, 8 files readable, 5 matches

[13272] doi:10.1016/j.bbih.2025.101094 [paper]

Induction of endogenous IL-10 promotes resolution and tolerance of nitric oxide in microglia.

Journal: Brain, behavior, & immunity - health

Status: code on request

[13273] doi:10.1038/s41380-025-03204-9 [paper, data]

GABA_A receptor availability in clinical high-risk and first-episode psychosis: a [¹¹C]Ro15-4513 positron emission tomography study.

Journal: Molecular psychiatry

Status: code on request, 1 dataset cited

[13274] doi:10.1093/braincomms/fcaf318 [paper, repository]

Cognitive and physical activities are associated with cognitive resilience in a memory clinic cohort.

Journal: Brain communications

Authors' code: OssenKoppeLab (no license)

Status: code verified

[13275] doi:10.25259/cytojournal_47_2025 [paper, data]

Study on the correlation between Interleukin 4 and febrile seizures.

Journal: CytoJournal

Status: data only, 1 dataset cited

[13276] doi:10.3390/brainsci15090967 [paper, data]

The First Shall Be First: Letter-Position Coding and Spatial Invariance in Two Cases of Attentional Dyslexia.

Journal: Brain sciences

Status: data only, 1 dataset cited

[13277] doi:10.3390/s25175568 [paper, data]

Home Robot Interaction Based on EEG Motor Imagery and Visual Perception Fusion.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

Friday, 5 September 2025 (34 papers)

[13278] doi:10.1002/advs.202503373 [paper, repository]

A Replicable and Generalizable Neuroimaging-Based Indicator of Pain Sensitivity Across Individuals.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: OSF y2n34 (no license)

Status: code verified, 1 file readable, 2 matches

[13279] doi:10.1002/advs.202508259 [paper, data]

Allele-Specific Regulation of PAXIP1-AS1 by SMC3/CEBPB at rs112651172 in Psychiatric Disorders Drives Synaptic and Behavioral Dysfunctions in Mice.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[13280] doi:10.1016/j.celrep.2025.116198 [paper]

A single-cell, long-read, isoform-resolved case-control study of FTD reveals cell-type-specific and broad splicing dysregulation in human brain.

Journal: Cell reports

Status: code on request

[13281] doi:10.1016/j.celrep.2025.116219 [paper]

Adverse gestational environment configures a subpopulation of ventral dentate granule cells for recruitment to drive innate anxiety.

Journal: Cell reports

Status: code on request

[13282] doi:10.1016/j.celrep.2025.116229 [paper, repository]

Refinement of efficient encodings of movement in the dorsolateral striatum throughout learning.

Journal: Cell reports

Authors' code: Zenodo 15941678 (CC-BY-4.0)

Status: empty repository

[13283] doi:10.1016/j.celrep.2025.116247 [paper]

Paraspeckle protein NONO regulates active chromatin by allosterically stimulating NSD1.

Journal: Cell reports

Status: code on request

[13284] doi:10.1016/j.celrep.2025.116248 [paper, repository]

The dorsal column nuclei encode and transmit the network signatures of mechanical allodynia.

Journal: Cell reports

Authors' code: Zenodo 16308005 (CC-BY-4.0), tpbollu/virlogeuxbollu2025 (no license)

Status: code verified, 32 files readable

[13285] doi:10.1016/j.isci.2025.113341 [paper, data]

Contribution of auditory distance cues to size constancy in perception and grasping in restricted viewing.

Journal: iScience

Status: code on request, 2 datasets cited

[13286] doi:10.1016/j.isci.2025.113516 [paper]

SIFamide-dependent synaptic plasticity in male-specific GABAergic neurons underlies experience-modulated mating behaviors.

Journal: iScience

Status: code on request

[13287] doi:10.1021/acs.langmuir.5c03469 [paper, data]

Myelin-Proteinoids Interactions in Neural Signaling.

Journal: Langmuir : the ACS journal of surfaces and colloids

Status: data only, 1 dataset cited

[13288] doi:10.1038/s41380-025-03195-7 [paper, repository]

The role of low subcortical iron, white matter myelin, and oligodendrocytes in schizophrenia: a quantitative susceptibility mapping and diffusion tensor imaging study.

Journal: Molecular psychiatry

Authors' code: lukevano/KCL_Neuromelanin-MRI (CC-BY-NC-4.0)

Status: code verified, 4 files readable, 1 match

[13289] doi:10.1038/s41380-025-03196-6 [paper, repository]

Impulsivity and neuroticism share distinct functional connectivity signatures with alcohol-use risk in youth.

Journal: Molecular psychiatry

Authors' code: nitrc.org/projects/bioimagesuite (no license)

Status: code verified

[13290] doi:10.1038/s41386-025-02183-3 [paper]

Towards causal inference-based antidepressant selection with brain and blood biomarkers.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: code on request

[13291] doi:10.1038/s41467-025-63020-1 [paper, repository]

Ultrasound system for precise neuromodulation of human deep brain circuits.

Journal: Nature communications

Authors' code: Zenodo 15360988 (CC-BY-4.0), ucl-bug/transcranial-ultrasound-planning (GPL-3.0), Zenodo 15627889 (GPL-3.0)

Status: code verified, 36 files readable, 7 matches

[13292] doi:10.1038/s41467-025-63473-4 [paper]

Gut microbial production of imidazole propionate drives Parkinson's pathologies.

Journal: Nature communications

Status: data only

[13293] doi:10.1038/s41467-025-63493-0 [paper, repository]

Covariant spatio-temporal receptive fields for spiking neural networks.

Journal: Nature communications

Authors' code: jegp/nrf (GPL-3.0), Zenodo 16651826 (CC-BY-4.0)

Status: code verified, 21 files readable, 4 matches

[13294] doi:10.1038/s41467-025-63564-2 [paper, repository]

Hemispheric asymmetry of tau pathology is related to asymmetric amyloid deposition in Alzheimer's Disease.

Journal: Nature communications

Authors' code: Zenodo 16759856 (GPL-3.0), teanijarv/phd-neurodegeneration-imaging (GPL-3.0)

Status: code verified, 52 files readable, 29 matches

[13295] doi:10.1038/s43587-025-00926-x [paper, repository]

A blood-based DNA damage signature in patients with Parkinson's disease is associated with disease progression.

Journal: Nature aging

Authors' code: DNAdamageinPD/Natureageing (MIT), Zenodo 16728586 (CC-BY-4.0), codeocean:1403558 (no license)

Status: code verified, 2 files readable

[13296] doi:10.1073/pnas.2423557122 [paper, repository]

Integrated Ising model with global inhibition for decision-making.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 16498152 (CC-BY-4.0), olgatapinova/integrated_ising_model_two_abstract_options (no license)

Status: code verified, 13 files readable, 6 matches

[13297] doi:10.1073/pnas.2500938122 [paper, repository]

A mosquito-inspired theoretical framework for acoustic signal detection.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: jfaber3/Fig-Files-A-mosquito-inspired-theoretical-framework (no license)

Status: code verified, 6 files readable, 2 matches

[13298] doi:10.1073/pnas.2502269122 [paper, data]

Joint models reveal human subcortical underpinnings of choice and learning behavior.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[13299] doi:10.1101/2025.09.01.673067 [paper, repository]

Representational magnitude as a geometric signature of image and word memorability

Journal: bioRxiv (preprint)

Authors' code: davidamadeusvogelsang/Memorability_L2norm_project (no license)

Status: code verified, 4 files readable, 3 matches

[13300] doi:10.1113/jp287845 [paper, data]

Oxytocinergic signalling in the respiratory parafacial region increases the activity of chemosensitive neurons and respiratory output.

Journal: The Journal of physiology

Status: data only, 1 dataset cited

[13301] doi:10.1162/nol.a.12 [paper, data]

Challenges and Methods in Annotating Natural Speech for Neurolinguistic Research.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 3 datasets cited

[13302] doi:10.1162/nol.a.14 [paper, repository]

Attention Modulation to Linguistic Speech Units.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: Zenodo 15518572 (CC-BY-4.0)

Status: code verified, 19 files readable, 8 matches

[13303] doi:10.12688/openreseurope.20953.1 [paper, repository]

Functional mapping of auditory responses to complex sounds under light anesthesia in rhesus macaques.

Journal: Open research Europe

Authors' code: Zenodo 15297317 (CC-BY-4.0), mdobraz/PrimaVoice-Toolbox (MIT), Zenodo 5075674 (CC-BY-4.0), Zenodo 5075675 (CC-BY-4.0)

Status: code verified, 1,304 files readable, 7 matches

[13304] doi:10.1371/journal.pbio.3003337 [paper, data]

Developmental auditory deprivation in one ear impairs brainstem binaural processing and reduces spatial hearing acuity.

Journal: PLoS biology

Status: data only, 1 dataset cited

[13305] doi:10.1590/1980-5764-dn-2024-0239 [paper]

<i>HSPA13</i> gene and microRNA-155: relationship between Down syndrome and Alzheimer's disease.

Journal: Dementia & neuropsychologia

Status: data only

[13306] doi:10.1590/1980-5764-dn-2024-0254 [paper, data]

Effects of deep brain stimulation on personality and executive function in Parkinson's disease.

Journal: Dementia & neuropsychologia

Status: data only, 1 dataset cited

[13307] doi:10.21769/bioprotoc.5442 [paper, repository]

Training Mice to Perform Attentional Set-Shifting Under Head Restraint.

Journal: Bio-protocol

Authors' code: spellmanlab/FlexRig (no license)

Status: code verified, 4 files readable

[13308] doi:10.26508/lsa.202503372 [paper, data]

Elucidating the role of human skeletal muscles in the pathogenesis of enterovirus D68 infection.

Journal: Life science alliance

Status: data only, 4 datasets cited

[13309] doi:10.3389/fimmu.2025.1616312 [paper, data]

Identifying pyroptosis-hub genes and immune infiltration in neonatal hypoxic-ischemic brain injury.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[13310] doi:10.3389/fnagi.2025.1672971 [paper, data]

Explainable machine learning for early detection of Parkinson's disease in aging populations using vocal biomarkers.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[13311] doi:10.3389/fnins.2025.1667585 [paper, data]

Molecular pathogenesis of Alzheimer's disease onset in a mouse model: effects of cannabidiol treatment.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

Thursday, 4 September 2025 (23 papers)

[13312] doi:10.1002/mds.70030 [paper, repository]

A Novel α-Synuclein K58N Missense Variant in a Patient with Parkinson's Disease.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: Zenodo 14730688 (CC-BY-4.0)

Status: code verified, 2 files readable

[13313] doi:10.1007/s00702-025-02992-2 [paper]

State-dependent reactivity of anterior cingulate cortex neurochemistry and downstream autonomic arousal in intrusive thinking.

Journal: Journal of neural transmission (Vienna, Austria : 1996)

Status: code on request

[13314] doi:10.1007/s40279-025-02299-y [paper]

Neurodegenerative Diseases in Male Former First-Class New Zealand Rugby Players.

Journal: Sports medicine (Auckland, N.Z.)

Status: code on request

[13315] doi:10.1016/j.celrep.2025.116226 [paper, repository]

Chemogenetic tuning reveals optimal MAPK signaling for cell-fate programming.

Journal: Cell reports

Authors' code: GallowayLabMIT/article-MAPK-chemogenetic-tuning (MIT), Zenodo 16739843 (MIT)

Status: code verified, 38 files readable, 3 matches

[13316] doi:10.1016/j.neuroimage.2025.121444 [paper, repository]

Brain metabolite concentrations in neonates with congenital heart disease before and after cardiac surgery.

Journal: NeuroImage

Authors' code: schorschinho/osprey (MIT)

Status: code verified, 487 files readable, 6 matches

[13317] doi:10.1017/pen.2025.10003 [paper, repository]

Autistic traits modulate neural and behavioral responses to social vs nonsocial rewards.

Journal: Personality neuroscience

Authors' code: OSF jmqv9 (no license)

Status: code verified, 10 files readable, 11 matches

[13318] doi:10.1017/s0272263125101149 [paper, data]

Individual differences matter in heritage language bilingual processing: An electroencephalography (EEG) study of grammatical gender.

Journal: Studies in second language acquisition

Status: data only, 1 dataset cited

[13319] doi:10.1073/pnas.2504185122 [paper, repository]

A thermodynamic perspective on mammalian neural crest ingression.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: HopyanLab/FLIMvivo (MIT), HopyanLab/Nuclear_Plotter (MIT), HopyanLab/Ingression_Simulation (MIT)

Status: code verified, 64 files readable, 2 matches

[13320] doi:10.1080/15548627.2025.2551676 [paper, data]

A novel <i>C. elegans</i> model for MAPT/Tau spreading reveals genes critical for endolysosomal integrity and seeded MAPT/Tau aggregation.

Journal: Autophagy

Status: data only, 1 dataset cited

[13321] doi:10.1172/jci.insight.194445 [paper, data]

Thyroid hormone promotes fetal neurogenesis.

Journal: JCI insight

Status: data only, 1 dataset cited

[13322] doi:10.1186/s12929-025-01180-4 [paper, data]

Early downregulation of hair cell (HC)-specific genes in the vestibular sensory epithelium during chronic ototoxicity.

Journal: Journal of biomedical science

Status: data only, 1 dataset cited

[13323] doi:10.1371/journal.pbio.3003330 [paper, repository]

Neuropeptide-mediated synaptic plasticity regulates context-dependent mating behaviors in Drosophila.

Journal: PLoS biology

Authors' code: vib-singlecell-nf (no license)

Status: code verified

[13324] doi:10.1371/journal.pbio.3003345 [paper, repository]

SIFa peptidergic neurons orchestrate the internal states and energy balance of male Drosophila melanogaster.

Journal: PLoS biology

Authors' code: vib-singlecell-nf (no license)

Status: code verified

[13325] doi:10.1371/journal.pone.0328903 [paper, repository]

Enhanced electrophysiological recordings in acute brain slices, spheroids, and organoids using 3D high-density multielectrode arrays.

Journal: PloS one

Authors' code: Zenodo 13908319 (no license)

Status: code verified, 1 file readable

[13326] doi:10.1371/journal.pone.0331046 [paper, data]

Reaching a cell monolayer at the end of hiPSC differentiation enhances neural crest lineage commitment.

Journal: PloS one

Status: data only, 1 dataset cited

[13327] doi:10.3389/fimmu.2025.1632891 [paper, data]

Structural modifications to pregnane neurosteroids alter inhibition of LPS/Lipid A binding at the MD-2 activation site within the TLR4 signaling complex.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[13328] doi:10.3389/fneur.2025.1609600 [paper, data]

Analysis of clinical features and genetic variants in Chinese children with pyridoxine-dependent epilepsy: a case series study.

Journal: Frontiers in neurology

Status: data only, 2 datasets cited

[13329] doi:10.3389/fnmol.2025.1369365 [paper]

Identifying biomarkers of hepatic fatty acid metabolism disorder in sevoflurane-induced brain developmental injury by bioinformatics analysis.

Journal: Frontiers in molecular neuroscience

Status: code on request

[13330] doi:10.3389/fphar.2025.1613438 [paper, data]

Abnormal Ca<sup>2+</sup> handling and reduced I<sub>to</sub> contribute to citalopram-induced QT prolongation and cardiac arrhythmias.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[13331] doi:10.3389/fphar.2025.1661744 [paper, data]

Exploring bioactive phytochemicals as ULK1 activators for enhancing cytoprotective autophagy in amyotrophic lateral sclerosis.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[13332] doi:10.3390/ijms26178634 [paper, data]

From Immediate Impact to Enduring Change: A Transcriptomic Comparison of tDCS's Temporal Effects and Its Long-Term Equivalence with TMS.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[13333] doi:10.3390/life15091400 [paper, data]

Neuro-Genomic Mapping of Cardiac Neurons with Systemic Analysis Reveals Cognitive and Neurodevelopmental Impacts in Congenital Heart Disease.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[13334] doi:10.3892/etm.2025.12963 [paper, data]

A <i>GABRB3</i> mutation (c.5G>A, p.Trp2*) in twins with generalized epilepsy with febrile seizures: A case report.

Journal: Experimental and therapeutic medicine

Status: data only, 1 dataset cited

Wednesday, 3 September 2025 (50 papers)

[13335] doi:10.1007/s00330-025-11989-0 [paper, repository]

Evaluating large language model-generated brain MRI protocols: performance of GPT4o, o3-mini, DeepSeek-R1 and Qwen2.5-72B.

Journal: European radiology

Authors' code: shk03/llm_brain_mri_protocols (Apache-2.0)

Status: code verified, 10 files readable, 4 matches

[13336] doi:10.1007/s10334-025-01292-w [paper]

Comparison of observed image quality and technical image quality parameters in 3D-FLAIR images.

Journal: Magma (New York, N.Y.)

Status: code on request

[13337] doi:10.1007/s40120-025-00823-w [paper, repository]

Altered Cortical Gyrification, Functional Connections, and Underlying Neurotransmitter Information in Patients with Parkinson's Disease with Levodopa-Induced Dyskinesia.

Journal: Neurology and therapy

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable, 3 matches

[13338] doi:10.1016/j.bbi.2025.106097 [paper, data]

Human microglia reduce alpha-synuclein aggregation and are neuroprotective in adult mouse brain.

Journal: Brain, behavior, and immunity

Status: data only, 1 dataset cited

[13339] doi:10.1016/j.celrep.2025.116213 [paper, data]

Temporal control of eating and body weight by GHSR-expressing suprachiasmatic nucleus neurons.

Journal: Cell reports

Status: data only, 1 dataset cited

[13340] doi:10.1016/j.envres.2025.122734 [paper, data]

Organophosphate Flame Retardants Disrupt Autism-Relevant Gene Networks Across Development: A Cross-Species Multi-Omics Study.

Journal: Environmental research

Status: data only, 1 dataset cited

[13341] doi:10.1016/j.isci.2025.113481 [paper, repository]

Proprioception impacts body perception in healthy aging - Insights from a psychophysical and computational approach.

Journal: iScience

Authors' code: lacerbi/bads (no license)

Status: empty repository, 1 file readable

[13342] doi:10.1016/j.isci.2025.113483 [paper, data]

A single low-dimensional neural component of spinal motor neuron activity explains force generation across repetitive isometric tasks.

Journal: iScience

Status: code on request, 1 dataset cited

[13343] doi:10.1016/j.neuroimage.2025.121442 [paper, repository]

Conditional deep generative normative modeling for structural and developmental anomaly detection in the fetal brain.

Journal: NeuroImage

Authors' code: VictorSungminYou/Fetal-Brain-AnomalyDetection (Apache-2.0)

Status: code verified, 12 files readable, 8 matches

[13344] doi:10.1016/j.redox.2025.103857 [paper, data]

GLP-1R activation restores Gas6-driven efferocytosis in senescent foamy macrophages to promote neural repair.

Journal: Redox biology

Status: data only, 2 datasets cited

[13345] doi:10.1016/j.tjnut.2025.08.029 [paper]

Vascular Roads to a Healthier Brain: Lutein Moderates the Influence of Arterial Stiffness on Cognitive Function.

Journal: The Journal of nutrition

Status: code on request

[13346] doi:10.1016/j.xjmad.2025.100147 [paper, repository]

An examination of anhedonia as a predictor of response with transcranial magnetic stimulation treatment for youth with depression.

Journal: Journal of mood and anxiety disorders

Authors' code: OSF 8nbv9 (no license)

Status: empty repository

[13347] doi:10.1016/j.xpro.2025.104056 [paper]

Protocol for evaluating protein intake-induced feeding inhibition in Drosophila using a pre-feeding approach.

Journal: STAR protocols

Status: code on request

[13348] doi:10.1038/s41586-025-09226-1 [paper, repository]

Brain-wide representations of prior information in mouse decision-making.

Journal: Nature

Authors' code: Eden-Kramer-Lab/spectral_connectivity (GPL-3.0), int-brain-lab/prior-localization (MIT)

Status: code verified, 92 files readable, 16 matches

[13349] doi:10.1038/s41586-025-09235-0 [paper, repository]

A brain-wide map of neural activity during complex behaviour.

Journal: Nature

Authors' code: int-brain-lab/paper-brain-wide-map (MIT), stevenjwest/brainregister (GPL-3.0), SainsburyWellcomeCentre/lasagna (GPL-3.0), cortex-lab/alyx (no license)

Status: code verified, 424 files readable, 27 matches

[13350] doi:10.1038/s41586-025-09420-1 [paper, data]

Amygdala-liver signalling orchestrates glycaemic responses to stress.

Journal: Nature

Status: data only, 1 dataset cited

[13351] doi:10.1038/s41586-025-09435-8 [paper, data]

Single-cell transcriptomic and genomic changes in the ageing human brain.

Journal: Nature

Status: data only, 2 datasets cited

[13352] doi:10.1038/s41586-025-09449-2 [paper, repository]

Dynamic fibroblast-immune interactions shape recovery after brain injury.

Journal: Nature

Authors' code: newingcrystal/CNS_Fibroblasts (no license)

Status: code verified, 35 files readable, 21 matches

[13353] doi:10.1038/s41586-025-09460-7 [paper, repository]

Rewiring of cortical glucose metabolism fuels human brain cancer growth.

Journal: Nature

Authors' code: baharm1/iMFA (Apache-2.0)

Status: code verified, 71 files readable, 5 matches

[13354] doi:10.1038/s41586-025-09478-x [paper, repository]

Spatial joint profiling of DNA methylome and transcriptome in tissues.

Journal: Nature

Authors' code: zhou-lab/Spatial-DMT-2024 (no license), Zenodo 15843594 (CC-BY-4.0), Zenodo 15843593 (no license), hongxiang2023/spatial-dmt (no license)

Status: code verified, 34 files readable, 12 matches

[13355] doi:10.1038/s41586-025-09486-x [paper, repository]

PICALM Alzheimer's risk allele causes aberrant lipid droplets in microglia.

Journal: Nature

Authors' code: Zenodo 15238434 (CC-BY-4.0), Zenodo 14853786 (CC-BY-4.0), Zenodo 11105250 (CC-BY-4.0), endeneon/picalm_kozlova (no license)

Status: code verified, 996 files readable, 14 matches

[13356] doi:10.1038/s44385-025-00033-x [paper, repository]

Interstitial fluid transport dynamics predict glioblastoma invasion and progression.

Journal: npj biomedical innovations

Authors' code: avaccari/lymph4d (GPL-3.0)

Status: code verified, 28 files readable

[13357] doi:10.1080/19490976.2025.2547029 [paper, data]

Gut microbiota dysbiosis affects intestinal sensitivity through epithelium-to-neuron signaling: novel insights from a colon organoid-based model to improve visceral pain therapy.

Journal: Gut microbes

Status: data only, 1 dataset cited

[13358] doi:10.1083/jcb.202410130 [paper, repository]

Mitochondrial fission controls astrocyte morphogenesis and organization in the cortex.

Journal: The Journal of cell biology

Authors' code: Zenodo 15311182 (MIT), eroglu-lab/seg_cul_astro_app (MIT)

Status: code verified, 43 files readable, 1 match

[13359] doi:10.1093/braincomms/fcaf295 [paper, data]

A multi-modal approach for the treatment of non-fluent/agrammatic variant of Primary Progressive Aphasia.

Journal: Brain communications

Status: data only, 1 dataset cited

[13360] doi:10.1093/narcan/zcaf029 [paper, repository]

Neural interaction explainable AI predicts drug response across cancers.

Journal: NAR cancer

Authors' code: eliorc/node2vec (MIT), PhGK/NeurixAI (MIT), Zenodo 15536558 (CC-BY-4.0)

Status: code verified, 84 files readable, 17 matches

[13361] doi:10.1098/rsbl.2025.0234 [paper, repository]

Electrophysiological recordings reveal photoreceptor coupling in the dorsal rim areas of honeybee and bumblebee eyes.

Journal: Biology letters

Authors' code: JJFosterLab/DRA-coupling (no license)

Status: code verified, 13 files readable, 4 matches

[13362] doi:10.1098/rspb.2025.1542 [paper, repository]

Virtual endocast of the Late Miocene <i>Hoplitomeryx matthei</i> (Artiodactyla, Hoplitomerycidae) and brain evolution in insular ruminants.

Journal: Proceedings. Biological sciences

Authors' code: Zenodo 15100970 (CC-BY-4.0), doi:10.6084/m9.figshare.c.7963808 (no license)

Status: code verified

[13363] doi:10.1126/sciadv.adw4021 [paper, data]

Supplementing HIV-ART with cannabinoids increases serotonin, BHB, and Ahr signaling while reducing secondary bile acids and acylcholines.

Journal: Science advances

Status: data only, 1 dataset cited

[13364] doi:10.1126/sciadv.adw4666 [paper, data]

Synaptic targets of circadian clock neurons influence core clock parameters.

Journal: Science advances

Status: data only, 1 dataset cited

[13365] doi:10.1126/sciadv.adw6404 [paper, repository]

Path integration impairments reveal early cognitive changes in subjective cognitive decline.

Journal: Science advances

Authors' code: Zenodo 15532479 (CC-BY-4.0), cogneuroai/Bayesian-hierarchical-model-for-PI (no license)

Status: code verified, 4 files readable, 1 match

[13366] doi:10.1162/imag.a.135 [paper, repository]

Neural representations of visual statistical learning based on temporal duration.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF e9g5f (no license)

Status: code verified, 7 files readable, 5 matches

[13367] doi:10.1186/s12911-025-03148-8 [paper, repository]

Comparing supervised machine learning algorithms for the prediction of partial arterial pressure of oxygen during craniotomy.

Journal: BMC medical informatics and decision making

Authors' code: abeckerp/pao2-prediction (GPL-3.0)

Status: code verified, 45 files readable, 21 matches

[13368] doi:10.1210/jendso/bvaf145 [paper, data]

Impact of Meditation Device Use on Quality of Life of Patients Following Surgery for Hypercortisolism.

Journal: Journal of the Endocrine Society

Status: data only, 1 dataset cited

[13369] doi:10.1371/journal.pbio.3003359 [paper, repository]

Short-term memory errors are strongly associated with a drift in neural activity in the posterior parietal cortex.

Journal: PLoS biology

Authors' code: Zenodo 15872574 (CC-BY-4.0)

Status: code verified

[13370] doi:10.1371/journal.pone.0330859 [paper, data]

New insights into the molecular biology of Alzheimer's-like cerebral amyloidosis achieved through multi-omics approaches.

Journal: PloS one

Status: data only, 1 dataset cited

[13371] doi:10.1523/eneuro.0573-24.2025 [paper, repository]

Investigating Saccade-Onset Locked EEG Signatures of Face Perception during Free-Viewing in a Naturalistic Virtual Environment.

Journal: eNeuro

Authors' code: debnolte/saccade-onset_ERPs_of-face_perception_free-viewing_VR (no license)

Status: code verified, 15 files readable, 7 matches

[13372] doi:10.1523/jneurosci.0102-25.2025 [paper, repository]

Optical Recordings of Unitary Synaptic Connections Reveal High and Random Local Connectivity between CA3 Pyramidal Cells.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: repo.researchdata.hu/dataverse/szabadics_lab (no license)

Status: code verified

[13373] doi:10.1523/jneurosci.2382-24.2025 [paper, data]

A Rapid Anterior Auditory Processing Stream through the Insulo-parietal Auditory Field in the Rat.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[13374] doi:10.3389/fimmu.2025.1609208 [paper, data]

Polystyrene nanoplastics induce oxidative stress in <i>Aurelia coerulea</i> polyps, microglia, and mice.

Journal: Frontiers in immunology

Status: data only, 2 datasets cited

[13375] doi:10.3389/fimmu.2025.1666225 [paper, data]

Zinc alleviates stroke development through autophagy-mediated modulation of immune microenvironment.

Journal: Frontiers in immunology

Status: data only, 2 datasets cited

[13376] doi:10.3389/fnagi.2025.1611611 [paper, repository]

Corpus callosum microstructure in chimpanzees (pan troglodytes): associations with age, handedness and cognition.

Journal: Frontiers in aging neuroscience

Authors' code: framagit.org/cpoupon/gkg (other)

Status: code verified, 2,000 files readable, 3 matches

[13377] doi:10.3389/fphar.2025.1643343 [paper, data]

Cilostazol-inhibited RhoA/NF-κB signaling mitigates hippocampal inflammation and post-stroke depression.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[13378] doi:10.3389/fpsyt.2025.1644105 [paper, repository]

Cannabis use in adolescence and young adulthood and its effects on brain structure and function: a scoping review.

Journal: Frontiers in psychiatry

Authors' code: OSF ek9bf (no license)

Status: empty repository

[13379] doi:10.3390/diagnostics15172236 [paper, data]

A Comparison of Three Perfusion Algorithms in Patients at Risk of Delayed Cerebral Ischemia After Subarachnoid Hemorrhage.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[13380] doi:10.3390/ijms26178559 [paper, data]

Brain Metabolism of Allopregnanolone and Isoallopregnanolone in Male Rat Brain.

Journal: International journal of molecular sciences

Status: data only, 5 datasets cited

[13381] doi:10.3390/ijms26178573 [paper, data]

Molecular Imbalances Between Striosome and Matrix Compartments Characterize the Pathogenesis and Pathophysiology of Huntington's Disease Model Mouse.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[13382] doi:10.3390/s25175486 [paper, data]

MineVisual: A Battery-Free Visual Perception Scheme in Coal Mine.

Journal: Sensors (Basel, Switzerland)

Status: data only, 3 datasets cited

[13383] doi:10.4103/nrr.nrr-d-25-00121 [paper, repository]

Interaction of artificial intelligence, mental disorders, and diverse data modalities: Potential treatment management based on the "method-disease-data" axis.

Journal: Neural regeneration research

Authors' code: dmis-lab/biobert (Apache-2.0)

Status: code verified, 22 files readable, 5 matches

[13384] doi:10.7554/elife.92088 [paper, repository]

Kilohertz transcranial magnetic perturbation (kTMP) as a new non-invasive method to modulate cortical excitability.

Journal: eLife

Authors' code: cmerrick15/ktmp_mep_analysis (MIT)

Status: code verified, 6 files readable, 4 matches

Tuesday, 2 September 2025 (52 papers)

[13385] doi:10.1002/ece3.72001 [paper, repository]

Natural Habitat and Wild Behaviors of the Dwarf Cuttlefish, <i>Ascarosepion bandense</i>.

Journal: Ecology and evolution

Authors' code: tbarlow99/Philippines-expedition-data-analysis (no license)

Status: code verified, 4 files readable, 2 matches

[13386] doi:10.1002/mrm.70031 [paper, repository]

Accelerated water residual removal in MRS: Exploring deep learning versus fitting-based approaches.

Journal: Magnetic resonance in medicine

Authors' code: TuchoTurco/WaterFit (no license), TuchoTurco/DeepWatR (no license)

Status: dead link

[13387] doi:10.1002/mrm.70054 [paper, repository]

Vessel segmentation for $$ \chi $$ -separation in quantitative susceptibility mapping.

Journal: Magnetic resonance in medicine

Authors' code: SinaStraub/GRE_vessel_seg (CC0-1.0), Haifafh/MFAT (Apache-2.0), SNU-LIST/chi-separation (no license)

Status: code verified, 24 files readable, 5 matches

[13388] doi:10.1002/mrm.70066 [paper, repository]

Alternating-contrast single-shot spiral MR-ARFI with model-based displacement map reconstruction.

Journal: Magnetic resonance in medicine

Authors' code: grissomlab/modelBasedSpiralARFI (no license)

Status: code verified, 2 files readable, 1 match

[13389] doi:10.1007/s00221-025-07147-z [paper, repository]

Neuromuscular control of a five-finger pinch task is influenced by training history.

Journal: Experimental brain research

Authors' code: dyljcarter/repo-carter-et-al-2025 (no license)

Status: code verified, 14 files readable, 13 matches

[13390] doi:10.1007/s10278-025-01649-6 [paper]

Mask-Guided and Fidelity-Constrained Deep Learning Model for Accurate Translation of Brain CT Images to Diffusion MRI Images in Acute Stroke Patients.

Journal: Journal of imaging informatics in medicine

Status: code on request

[13391] doi:10.1007/s11682-025-01034-5 [paper]

Hippocampal subfield-specific alterations in post-stroke dementia with subcortical lesion.

Journal: Brain imaging and behavior

Status: code on request

[13392] doi:10.1007/s12021-025-09739-0 [paper, repository]

Sketching a Space of Brain States.

Journal: Neuroinformatics

Authors' code: medusamedusa/K_operator_parkinson (no license), medusamedusa/AAL3_K-operator_AD (no license), Zenodo 14162649 (no license), medusamedusa/BrainSpaces (MIT), medusamedusa/BrainSpaces (MIT), Zenodo 15302779 (MIT), medusa-medusa/BrainSpaces (no license)

Status: code verified, 23 files readable, 3 matches

[13393] doi:10.1007/s41666-025-00213-9 [paper, repository]

Through the Speech and Vocal Signals Hidden Secrets: An Explainable Methodology for Neurological Diseases Early Detection.

Journal: Journal of healthcare informatics research

Authors' code: PatriziaVizza/SpeechAndVocalSignalsAnalysis (no license)

Status: dead link

[13394] doi:10.1016/j.cdnut.2025.107543 [paper]

Comparing Mediterranean and Western Diets: Cognitive and Microbiota Effects in Middle-Aged Rats.

Journal: Current developments in nutrition

Status: code on request

[13395] doi:10.1016/j.crmeth.2025.101146 [paper, repository]

A modular, adaptable, and accessible implant kit for chronic electrophysiological recordings in rats.

Journal: Cell reports methods

Authors' code: Zenodo 16126335 (MIT), Zenodo 16288405 (CC-BY-4.0), Zenodo 16126336 (MIT), rjibanezalcala/explore (MIT), lddavila/cluster_neuronspikes (no license)

Status: code verified, 39 files readable, 2 matches

[13396] doi:10.1016/j.eclinm.2025.103469 [paper, repository]

Mitigating the impact of motor impairment on self-administered digital tests: a longitudinal cohort study in stroke.

Journal: EClinicalMedicine

Authors' code: dragos-gruia/computational_modelling_of_behaviour_in_stroke (MIT)

Status: code verified, 15 files readable, 15 matches

[13397] doi:10.1016/j.isci.2025.113489 [paper]

Therapeutic potential of 5HT2CR in alleviating spasticity and pain via modulation of motor neurons and interneurons in spinal cord injury.

Journal: iScience

Status: code on request

[13398] doi:10.1016/j.prdoa.2025.100391 [paper, data]

SNP rs7549881, near SGIP1 at 1p31.3, is significantly associated with digestive disorders and Parkinsonism in women.

Journal: Clinical parkinsonism & related disorders

Status: data only, 1 dataset cited

[13399] doi:10.1021/acssensors.5c01058 [paper, repository]

Explainable Deep Learning Framework for SERS Bioquantification.

Journal: ACS sensors

Authors' code: jkz22/CRIME (Apache-2.0)

Status: code verified, 8 files readable, 6 matches

[13400] doi:10.1038/s41380-025-03201-y [paper, repository]

Cell membrane cholesterol affects serotonin transporter efflux due to altered transporter oligomerization.

Journal: Molecular psychiatry

Authors' code: schuetzgroup/TOCCSL_analysis (no license)

Status: code verified, 5 files readable

[13401] doi:10.1038/s41467-025-61805-y [paper, repository]

Feeding state-dependent neuropeptidergic modulation of reciprocally interconnected inhibitory neurons biases sensorimotor decisions in Drosophila.

Journal: Nature communications

Authors' code: sourceforge.net/mwt (no license), swh:swh:1:dir:3f06d6d731741c4beebe901f5ef0b909c8b0b6bd (no license), gitlab.pasteur.fr/flaurent/chloestaggers/;visit=swh:1:snp:7480ee779daabf5b5ac887096643587949adaf43;anchor=swh:1:rev:913a5bc94bab9f2ebee578ef624c92d2e46e0c19 (no license)

Status: code verified

[13402] doi:10.1038/s41467-025-63079-w [paper, repository]

Caudate serotonin signaling during social exchange distinguishes essential tremor and Parkinson's disease patients.

Journal: Nature communications

Authors' code: AlecHartle/article-UG-Caudate (no license)

Status: code verified, 4 files readable, 4 matches

[13403] doi:10.1038/s41467-025-63204-9 [paper, repository]

Connectome-constrained ligand-receptor interaction analysis for understanding brain network communication.

Journal: Nature communications

Authors' code: neurosynth/neurosynth (MIT), jinworks/CellChat (GPL-3.0), Zenodo 15377755 (CC-BY-4.0), duzc-Repos/CLRIA (MIT)

Status: code verified, 124 files readable, 21 matches

[13404] doi:10.1038/s41556-025-01751-5 [paper, data]

Genome-wide CRISPR screen identifies Menin and SUZ12 as regulators of human developmental timing.

Journal: Nature cell biology

Status: data only, 2 datasets cited

[13405] doi:10.1038/s41597-025-05900-1 [paper, repository]

A comprehensive EEG dataset of laser-evoked potentials for pain research.

Journal: Scientific data

Authors' code: XiangyueZhao/Supplement-Data (no license)

Status: code verified, 7 files readable, 1 match

[13406] doi:10.1038/s41598-025-10526-9 [paper, repository]

Implicit Runge-Kutta based sparse identification of governing equations in biologically motivated systems.

Journal: Scientific reports

Authors' code: anvari94/IRK-SINDy (MIT)

Status: code verified, 17 files readable, 2 matches

[13407] doi:10.1038/s41598-025-14705-6 [paper, data]

A Nostalgia Brain-Music Interface for enhancing nostalgia, well-being, and memory vividness in younger and older individuals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[13408] doi:10.1038/s41598-025-99000-0 [paper, repository]

Comparative analysis of supervised and self-supervised learning with small and imbalanced medical imaging datasets.

Journal: Scientific reports

Authors' code: aiformedresearch/medical-imaging-SSL-vs-SL (MIT)

Status: code verified, 29 files readable, 4 matches

[13409] doi:10.1073/pnas.2426135122 [paper, data]

Structural insights into the substrate uptake and inhibition of the human creatine transporter (hCRT).

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 7 datasets cited

[13410] doi:10.1080/15548627.2025.2552905 [paper, data]

Impaired MAPT/tau-secretory lysosomes are linked to cognitive vulnerability in Alzheimer patients.

Journal: Autophagy

Status: data only, 1 dataset cited

[13411] doi:10.1101/gad.352670.125 [paper, repository]

ELAV mediates circular RNA biogenesis in neurons.

Journal: Genes & development

Authors' code: hilgers-lab/circles2024 (MIT), hilgers-lab/SpliceFlow (GPL-3.0)

Status: code verified, 47 files readable, 6 matches

[13412] doi:10.1101/gr.279501.124 [paper]

Transcriptional modulation unique to vulnerable motor neurons predicts ALS across species and SOD1 mutations.

Journal: Genome research

Status: data only

[13413] doi:10.1162/imag.a.121 [paper, repository]

SNAKE: A modular realistic fMRI data simulator from the space-time domain to k-space and back.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: paquiteau/pysap-fmri (no license)

Status: code verified, 23 files readable

[13414] doi:10.1162/imag.a.125 [paper, repository]

Single scan, subject-specific component extraction in dynamic functional connectivity using dictionary learning.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: rocklandsample.org/accessing-the-neuroimaging-data-releases (no license), Brain-Connectivity-Lab/Single-Scan-Subject-Specific-component-extraction-in-dFC-using-DL (no license)

Status: code verified, 59 files readable, 8 matches

[13415] doi:10.1162/imag.a.128 [paper, repository]

Functional ultrasound (fUS) detects mild cerebral alterations using canonical correlation analysis denoising and dynamic functional connectivity analysis.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 16893295 (CC-BY-4.0)

Status: code verified, 2 files readable

[13416] doi:10.1162/imag.a.131 [paper, repository]

Searchlight-based trial-wise fMRI decoding in the presence of trial-by-trial correlations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: JoramSoch/ITEM-SL-paper (GPL-3.0), JoramSoch/ITEM (GPL-3.0), cvnlab/GLMsingle (BSD-3-Clause)

Status: code verified, 217 files readable, 17 matches

[13417] doi:10.1162/imag.a.133 [paper, repository]

Effective connectivity between the medial temporal lobes and early visual cortex modulated by unrestricted viewing predicts memory retrieval and gaze reinstatement.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF seuqn (no license)

Status: code verified, 1 file readable

[13418] doi:10.1162/imag.a.134 [paper, repository]

GPT-4V shows human-like social perceptual capabilities at phenomenological and neural levels.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: santavis/GPT-4V-social-perception (MIT)

Status: code verified, 49 files readable, 6 matches

[13419] doi:10.1162/nol.a.11 [paper, data]

Lesion-Induced Changes to the Network Controllability of the Right Pars Triangularis in Aphasia.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 1 dataset cited

[13420] doi:10.1186/s10020-025-01326-y [paper, data]

RHBDF2 governs microglial neuroinflammation during cerebral ischemia-reperfusion injury and is positively regulated by the m6A reader YTHDF1.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 1 dataset cited

[13421] doi:10.1186/s10194-025-02143-8 [paper, data]

Artificial intelligence in headache medicine: between automation and the doctor-patient relationship. A systematic review.

Journal: The journal of headache and pain

Status: data only, 1 dataset cited

[13422] doi:10.1186/s12868-025-00979-z [paper, data]

Investigating topological alterations in procedural memory network across neuropsychiatric disorders using rs-fMRI and graph theory.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[13423] doi:10.1186/s12962-025-00650-8 [paper, repository]

Prolonged intermittent home video-EEG monitoring for drug-resistant epilepsy: the cost-availability model.

Journal: Cost effectiveness and resource allocation : C/E

Authors' code: VideoEEGPolicy/PIHVEM_policy (no license)

Status: code verified, 1 file readable, 1 match

[13424] doi:10.1186/s13024-025-00888-z [paper, data]

APOE genotype influences on the brain metabolome of aging mice - role for mitochondrial energetics in mechanisms of resilience in APOE2 genotype.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[13425] doi:10.1186/s13100-025-00370-z [paper, data]

Transposable element dynamics in glioblastoma stem cells: insights from locus-specific quantification.

Journal: Mobile DNA

Status: data only, 1 dataset cited

[13426] doi:10.12688/f1000research.163701.2 [paper, data]

Reference genome and reproduction-focused transcriptome for the threatened alpine tree frog ( <i>Litoria verreauxii alpina</i>).

Journal: F1000Research

Status: data only, 2 datasets cited

[13427] doi:10.1371/journal.pcbi.1013093 [paper, repository]

Changing cognitive chimera states in human brain networks with age: Variations in cognitive integration and segregation.

Journal: PLoS computational biology

Authors' code: DrewPatton77/Aging-Chimeras (no license)

Status: code verified, 8 files readable, 8 matches

[13428] doi:10.1371/journal.pone.0328219 [paper, repository]

Personalized models of disorders of consciousness reveal complementary roles of connectivity and local parameters in diagnosis and prognosis.

Journal: PloS one

Authors' code: Zenodo 15847853 (CC-BY-4.0), louzonca/DoC_models (no license), dagush/WholeBrain (no license)

Status: code verified, 173 files readable, 19 matches

[13429] doi:10.1371/journal.pone.0330681 [paper, repository]

An open-source replication for fast and accessible light propagation modeling in brain tissue.

Journal: PloS one

Authors' code: Zenodo 15490385 (no license)

Status: dead link

[13430] doi:10.1371/journal.pone.0331112 [paper, data]

Improving attachment style clustering with ROCKET and CatBoost: Insights from EEG analysis.

Journal: PloS one

Status: data only, 1 dataset cited

[13431] doi:10.1371/journal.pone.0331224 [paper, repository]

Missense variant analysis in the TRPV1 ARD reveals the unexpected functional significance of a methionine.

Journal: PloS one

Authors' code: esenlab/variant-analysis (MIT)

Status: code verified, 4 files readable

[13432] doi:10.1371/journal.pone.0331441 [paper, data]

Risk factor analysis and establishment of a predictive model for epilepsy comorbid with depression.

Journal: PloS one

Status: data only, 1 dataset cited

[13433] doi:10.3389/fncir.2025.1552130 [paper]

Topographic correspondence between retinotopic and whisker somatosensory map in mouse higher visual area and its development.

Journal: Frontiers in neural circuits

Status: code on request

[13434] doi:10.3389/fnins.2025.1646993 [paper]

Integrating scRNA-seq and GWAS data reveals potentially critical endothelial cells in large artery atherosclerotic stroke.

Journal: Frontiers in neuroscience

Status: data only

[13435] doi:10.3390/biology14091172 [paper, data]

Joint Modulation of Postural and Neural Correlates in Response to Motivational Images in Non-Clinical Drinkers.

Journal: Biology

Status: data only, 2 datasets cited

[13436] doi:10.3390/brainsci15090956 [paper, repository]

Action Video Gaming Enhances Brain Structure: Increased Cortical Thickness and White Matter Integrity in Occipital and Parietal Regions.

Journal: Brain sciences

Authors' code: OSF uz2n5 (no license)

Status: code verified, 5 files readable, 2 matches

Monday, 1 September 2025 (108 papers, 4 on this page)

[13437] doi:10.1002/1873-3468.70156 [paper, data]

C9orf72 ALS-causing mutations lead to mislocalization and aggregation of nucleoporin Nup107 into stress granules.

Journal: FEBS letters

Status: data only, 1 dataset cited

[13438] doi:10.1002/acm2.70249 [paper, data]

Optimizing anisotropic margins in single-isocenter multiple brain metastases radiosurgery using regressor strategies: A multi-institutional validation study.

Journal: Journal of applied clinical medical physics

Status: data only, 1 dataset cited

[13439] doi:10.1002/alz.70376 [paper]

Harmonizing genotype array data to understand genetic risk for brain amyloid burden in the AMYPAD PNHS Consortium.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[13440] doi:10.1002/alz.70658 [paper, repository]

Estimating the preclinical Alzheimer's disease course with multimodal data.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: dtownsend2022/c-time (no license)

Status: empty repository, 1 file readable

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