Every paper, by date: page 65

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 65 of 200: 5 August 2025 to 30 July 2025.

Tuesday, 5 August 2025 (43 papers, 33 on this page)

[14337] doi:10.1016/j.patter.2025.101323 [paper, repository]

Combined statistical-biophysical modeling links ion channel genes to physiology of cortical neuron types.

Journal: Patterns (New York, N.Y.)

Authors' code: AllenInstitute/AllenSDK (BSD-2-Clause), berenslab/hh_sbi (GPL-3.0), Zenodo 15463046 (GPL-3.0), berenslab/EphysExtraction (no license)

Status: code verified, 1,054 files readable, 8 matches

[14338] doi:10.1038/s41467-025-62115-z [paper, repository]

Inhibition mediated by group III metabotropic glutamate receptors regulates habenula activity and defensive behaviors.

Journal: Nature communications

Authors' code: Zenodo 15752614 (CC-BY-4.0), yaksilab/mglurpaper (no license)

Status: code verified, 158 files readable, 8 matches

[14339] doi:10.1038/s41467-025-62458-7 [paper]

Two-step detection of Lewy body pathology via smell-function testing and CSF α-synuclein seed amplification.

Journal: Nature communications

Status: code on request

[14340] doi:10.1038/s41467-025-62507-1 [paper, repository]

Higher-order and distributed synergistic functional interactions encode information gain in goal-directed learning.

Journal: Nature communications

Authors' code: brainets/bv2mne (no license), brainets/hosi_infogain (BSD-3-Clause), Zenodo 15674302 (BSD-3-Clause)

Status: code verified, 28 files readable, 11 matches

[14341] doi:10.1038/s41467-025-62554-8 [paper, repository]

Transient reactivation of small ensembles of adult-born neurons during REM sleep supports memory consolidation in mice.

Journal: Nature communications

Authors' code: vergaloy/Srinivasan_Koyanagi_2025 (GPL-3.0), Zenodo 15803872 (GPL-3.0)

Status: code verified, 310 files readable, 2 matches

[14342] doi:10.1038/s41531-025-01070-4 [paper, repository]

Enhanced beta power emerges from simulated parkinsonian primary motor cortex.

Journal: NPJ Parkinson's disease

Authors' code: suny-downstate-medical-center/pd_m1_6ohda (MIT), Zenodo 12399983 (CC-BY-4.0)

Status: code verified, 162 files readable, 14 matches

[14343] doi:10.1038/s41562-025-02268-5 [paper, repository]

Representational dynamics during extinction of fear memories in the human brain.

Journal: Nature human behaviour

Authors' code: dpachec/extinction (GPL-3.0), Zenodo 15926577 (GPL-3.0)

Status: code verified, 168 files readable, 7 matches

[14344] doi:10.1038/s41598-025-11281-7 [paper, data]

Numerical format integration in primary school children examined with frequency-tagged electroencephalography.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14345] doi:10.1038/s41598-025-12147-8 [paper, repository]

Transcriptome-based screening in TARDBP/TDP-43 knock-in motor neurons identifies the NEDD8-activating enzyme inhibitor MLN4924.

Journal: Scientific reports

Authors' code: neurobioinfo/miRNA_workflow (no license)

Status: code verified, 10 files readable, 2 matches

[14346] doi:10.1038/s42003-025-08573-z [paper, repository]

Profiling brain morphology for autism spectrum disorder with two cross-culture large-scale consortia.

Journal: Communications biology

Authors' code: brainchart/Lifespan (no license), zuoxinian/CCS (GPL-2.0), XueruFan/ASD-Project (no license)

Status: code verified, 884 files readable, 13 matches

[14347] doi:10.1038/s42003-025-08598-4 [paper, data]

GABAergic neurons in the dorsal raphe nucleus regulate social hierarchy in mice.

Journal: Communications biology

Status: data only, 1 dataset cited

[14348] doi:10.1038/s42255-025-01340-8 [paper, repository]

Spatial quantitative metabolomics enables identification of remote and sustained ipsilateral cortical metabolic reprogramming after stroke.

Journal: Nature metabolism

Authors' code: Gangqiwang/scDYMO (GPL-3.0)

Status: empty repository, 2 files readable

[14349] doi:10.1038/s43588-025-00841-6 [paper, repository]

Virtual brain twins for stimulation in epilepsy.

Journal: Nature computational science

Authors' code: HuifangWang/VEP_atlas_shared (no license), codeocean:3316132 (no license), codeocean:2143670 (no license), HuifangWang/VBT_INS_Stimulation (Apache-2.0)

Status: code verified, 59 files readable, 16 matches

[14350] doi:10.1038/s44321-025-00279-3 [paper]

Convergent activation of the integrated stress response and ER-mitochondria uncoupling in VAPB-associated ALS.

Journal: EMBO molecular medicine

Status: data only

[14351] doi:10.1073/pnas.2503373122 [paper, data]

Striatal and cerebellar interactions during reward-based motor performance.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[14352] doi:10.1080/01621459.2025.2542553 [paper, data]

The Effect of Alcohol Intake on Brain White Matter Microstructural Integrity: A New Causal Inference Framework for Incomplete Phenomic Data.

Journal: Journal of the American Statistical Association

Status: data only, 2 datasets cited

[14353] doi:10.1101/2025.08.01.25332824 [paper, repository]

Sleep as a window into thalamocortical pathology: generative modeling implicates NMDA receptor hypofunction in 22q11.2 deletion syndrome

Journal: medRxiv (preprint)

Authors' code: liobaberndt/cpns (no license)

Status: empty repository, 1 file readable

[14354] doi:10.1111/acel.70188 [paper, data]

TSP50 in Neural Stem Cells Regulates Aging-Related Cognitive Decline and Neuroinflammation by Altering the Gut Microbiota.

Journal: Aging cell

Status: data only, 1 dataset cited

[14355] doi:10.1177/0271678x251361254 [paper, data]

Spatiotemporal dynamics of computed tomography perfusion (CTP) parameters following aneurysmal subarachnoid hemorrhage (SAH).

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Status: data only, 1 dataset cited

[14356] doi:10.1177/08977151251362101 [paper]

Effects of Lifetime Exposure to Sports-Related Head Impacts on Brain Injury and Inflammatory Blood Biomarkers Among Former Middle-Aged Athletes.

Journal: Neurotrauma reports

Status: code on request

[14357] doi:10.1186/s12911-025-03126-0 [paper, repository]

Toward a fair, gender-debiased classifier for the diagnosis of attention deficit/hyperactivity disorder- a Machine-Learning based classification study.

Journal: BMC medical informatics and decision making

Authors' code: research.ibm.com/blog/ai-fairness-360 (no license)

Status: code verified

[14358] doi:10.1186/s12915-025-02333-5 [paper, data]

Ephrin-B2 deletion in GABAergic neurons induces cognitive deficits associated with single-nucleus transcriptomic differences in the prefrontal cortex.

Journal: BMC biology

Status: data only, 1 dataset cited

[14359] doi:10.1186/s12916-025-04277-7 [paper, data]

Episode-specific cortical functional connectome reorganization and neurobiological correlates in bipolar disorder: a cross-sectional study.

Journal: BMC medicine

Status: data only, 1 dataset cited

[14360] doi:10.1186/s13046-025-03484-7 [paper, data]

CSRP2 promotes the glioblastoma mesenchymal phenotype via p130Cas-mediated NF-κB and MAPK pathways.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 1 dataset cited

[14361] doi:10.1371/journal.pone.0327493 [paper, data]

Partial FAM19A5 deficiency in mice leads to disrupted spine maturation, hyperactivity, and an altered fear response.

Journal: PloS one

Status: data only, 2 datasets cited

[14362] doi:10.1523/eneuro.0014-25.2025 [paper, repository]

Subsecond Analysis of Locomotor Activity in Parkinsonian Mice.

Journal: eNeuro

Authors' code: keypoint-moseq.readthedocs.io (no license), ChuLab-GU/behavior-analysis (CC0-1.0)

Status: code verified, 7 files readable, 2 matches

[14363] doi:10.17305/bb.2025.11724 [paper, data]

Molecular aspects of Angelman Syndrome: Defining the new path forward.

Journal: Biomolecules & biomedicine

Status: data only, 1 dataset cited

[14364] doi:10.3389/fnagi.2025.1640653 [paper, data]

Distinct effect of partial sleep deprivation associated with gray matter changes in young and old adults.

Journal: Frontiers in aging neuroscience

Status: data only, 2 datasets cited

[14365] doi:10.3389/fninf.2025.1628030 [paper, data]

A neuronal imaging dataset for deep learning in the reconstruction of single-neuron axons.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[14366] doi:10.3389/fnsyn.2025.1621352 [paper, repository]

Morphological variability may limit single-cell specificity to electric field stimulation.

Journal: Frontiers in synaptic neuroscience

Authors' code: alleninstitute/allensdk (BSD-2-Clause), djtrotter/morph-var (no license)

Status: code verified, 1,008 files readable, 1 match

[14367] doi:10.3389/fphys.2025.1633028 [paper, data]

The alteration of the sensorimotor network in trigeminal neuralgia after microvascular decompression surgery: a follow-up study using independent component analysis.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[14368] doi:10.3390/biom15081131 [paper, data]

Benefits of Maternal Choline Supplementation on Aged Basal Forebrain Cholinergic Neurons (BFCNs) in a Mouse Model of Down Syndrome and Alzheimer's Disease.

Journal: Biomolecules

Status: data only, 1 dataset cited

[14369] doi:10.34133/research.0792 [paper, repository]

Task-Related Controllability of Functional Connectome During a Working Memory Task in Schizophrenia, Bipolar Disorder, and Major Depressive Disorder.

Journal: Research (Washington, D.C.)

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable, 3 matches

Monday, 4 August 2025 (30 papers)

[14370] doi:10.1002/btm2.70057 [paper]

3D printed nerve guidance conduit for biologics-free nerve regeneration and vascular integration.

Journal: Bioengineering & translational medicine

Status: code on request

[14371] doi:10.1016/j.mtbio.2025.102157 [paper, data]

Top-down engineered micron-cell derived nanovesicles encapsulating curcumin targeting the 3R strategy (remove, remodel, repair) for Alzheimer's disease therapy.

Journal: Materials today. Bio

Status: data only, 1 dataset cited

[14372] doi:10.1038/s41467-025-62069-2 [paper, repository]

Temporal coding carries more stable cortical visual representations than firing rate over time.

Journal: Nature communications

Authors' code: magland/ml_ms4alg (no license), XieLuanLab/temporal_code_stability (BSD-3-Clause), jiaxx/modular_network (GPL-3.0), VeronikaKoren/struct_pop_public (CC-BY-NC-ND-4.0), KordingLab/Neural_Decoding (BSD-3-Clause), Zenodo 15692420 (BSD-3-Clause)

Status: code verified, 1,686 files readable, 11 matches

[14373] doi:10.1038/s41467-025-62251-6 [paper, repository]

A multisynaptic spiking neuron for simultaneously encoding spatiotemporal dynamics.

Journal: Nature communications

Authors' code: Event-AHU/HARDVS (Apache-2.0), fanliangwei/Multisynaptic-spiking-neurons (no license)

Status: code verified, 308 files readable, 13 matches

[14374] doi:10.1038/s41467-025-62343-3 [paper, data]

Histone lactylation regulates DOCK4 to control heat nociception and supports Dynein-mediated Nav1.7 trafficking.

Journal: Nature communications

Status: data only, 1 dataset cited

[14375] doi:10.1038/s41467-025-62478-3 [paper, repository]

The spatial landscape of glial pathology and T cell response in Parkinson's disease substantia nigra.

Journal: Nature communications

Authors' code: dalhoomist/T-cell_and_glial_pathology_in_PD (MIT)

Status: code verified, 5 files readable, 2 matches

[14376] doi:10.1038/s41556-025-01708-8 [paper, data]

A programmed decline in ribosome levels governs human early neurodevelopment.

Journal: Nature cell biology

Status: data only, 2 datasets cited

[14377] doi:10.1038/s41562-025-02266-7 [paper, repository]

Neural similarity predicts whether strangers become friends.

Journal: Nature human behaviour

Authors' code: lisashen-syx/Neural-Similarity-Predicts-Whether-Strangers-Become-Friends (Apache-2.0), thomasyeolab/cbig (MIT)

Status: code verified, 2,003 files readable, 6 matches

[14378] doi:10.1038/s41597-025-05640-2 [paper, repository]

Diff5T: Benchmarking human brain diffusion MRI with an extensive 5.0 Tesla k-space and spatial dataset.

Journal: Scientific data

Authors' code: hansenms.github.io/sunrise (no license), mchiew.github.io/tools.html (no license), dakodako/mbepirecon (no license), SteenMoeller/NORDIC_Raw (other), fluese/reconstructionpipeline (CC-BY-NC-SA-4.0), daducci/AMICO (other), diffusionmritool.github.io (no license)

Status: code verified, 196 files readable, 5 matches

[14379] doi:10.1038/s42003-025-08412-1 [paper, repository]

fNIRS reproducibility varies with data quality, analysis pipelines, and researcher experience.

Journal: Communications biology

Authors' code: ibs-lab/FRESH (no license)

Status: code verified, 26 files readable, 15 matches

[14380] doi:10.1038/s42003-025-08561-3 [paper, repository]

Network spreading and local biological vulnerability in amyotrophic lateral sclerosis.

Journal: Communications biology

Authors' code: netneurolab/Farahani_ALS (no license), Zenodo 15865751 (CC-BY-4.0), thomasyeolab/cbig (MIT), LeonDLotter/ABAnnotate (GPL-3.0), benfulcher/GeneCategoryEnrichmentAnalysis (GPL-3.0)

Status: code verified, 2,103 files readable, 15 matches

[14381] doi:10.1038/s42003-025-08620-9 [paper, repository]

AgRP neuron activity enhances reward-related consummatory behaviors during energy deficit in mice.

Journal: Communications biology

Authors' code: Zenodo 3541615 (CC-BY-4.0), ndefrancesco/InstantFunctions (no license)

Status: code verified, 2 files readable

[14382] doi:10.1038/s42003-025-08623-6 [paper, data]

Transcriptome-wide regulation of folate on neural mRNA m<sup>6</sup>A methylome via carbon metabolism in Drosophila and mammals.

Journal: Communications biology

Status: data only, 1 dataset cited

[14383] doi:10.1073/pnas.2426916122 [paper, repository]

Rapid, interpretable data-driven models of neural dynamics using recurrent mechanistic models.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: thiagoburghi/RMM (MIT)

Status: code verified, 26 files readable, 9 matches

[14384] doi:10.1073/pnas.2427052122 [paper, data]

Immune-responsive gene 1: The mitochondrial key to Th17 cell pathogenicity in CNS autoimmunity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[14385] doi:10.1073/pnas.2508540122 [paper, data]

The activity and expression of adenylosuccinate lyase were reduced during modern human evolution, affecting brain and behavior.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[14386] doi:10.1111/mec.70064 [paper, data]

Highly Expressed Odorant Receptor Orthologs Detect the Aggregation Pheromone Lineatin in Trypodendron Ambrosia Beetles.

Journal: Molecular ecology

Status: data only, 1 dataset cited

[14387] doi:10.1111/nyas.15407 [paper, repository]

Foreign cultural norms are better accepted in the second language.

Journal: Annals of the New York Academy of Sciences

Authors' code: OSF jdg45 (no license)

Status: code verified, 2 files readable, 1 match

[14388] doi:10.1186/s10194-025-02118-9 [paper, repository]

Volume of the hypothalamus and its subunits in patients with episodic migraine without aura during interictal periods.

Journal: The journal of headache and pain

Authors' code: BBillot/hypothalamus_seg (Apache-2.0)

Status: code verified, 39 files readable

[14389] doi:10.1186/s12888-025-07189-1 [paper, repository]

A bayesian network model for neurocognitive disorders digital screening in Chinese population: development and validation study.

Journal: BMC psychiatry

Authors' code: YuYF97/NCD_model (no license)

Status: code verified, 1 file readable

[14390] doi:10.1186/s13071-025-06890-0 [paper, data]

Toxoplasma gondii-induced host's high secretion of 25-hydroxycholesterol for immunoprotection.

Journal: Parasites & vectors

Status: data only, 1 dataset cited

[14391] doi:10.1371/journal.pbio.3003309 [paper, repository]

Contextual auditory processing in the inferior colliculus is affected in a sex- and age-dependent manner in the valproic acid-induced rat model of autism.

Journal: PLoS biology

Authors' code: Zenodo 15914264 (MIT)

Status: code verified

[14392] doi:10.1371/journal.pone.0327562 [paper, data]

Neuroimaging insights into recent suicide attempters utilizing the raven task.

Journal: PloS one

Status: data only, 1 dataset cited

[14393] doi:10.3389/fmed.2025.1566870 [paper, data]

Feature fusion ensemble classification approach for epileptic seizure prediction using electroencephalographic bio-signals.

Journal: Frontiers in medicine

Status: data only, 2 datasets cited

[14394] doi:10.3389/fnbeh.2025.1633659 [paper, repository]

GABA receptor antagonism elicits feeding in the septohypothalamic nucleus.

Journal: Frontiers in behavioral neuroscience

Authors' code: OSF ft8ex (no license)

Status: code found, still to be checked

[14395] doi:10.3390/diagnostics15151955 [paper, data]

Disturbances in Resting State Functional Connectivity in Schizophrenia: A Study of Hippocampal Subregions, the Parahippocampal Gyrus and Functional Brain Networks.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[14396] doi:10.3390/genes16080934 [paper, data]

<i>RAB24</i> Missense Variant in Dogs with Cerebellar Ataxia.

Journal: Genes

Status: data only, 1 dataset cited

[14397] doi:10.3390/ijms26157536 [paper, data]

Data Mining and Biochemical Profiling Reveal Novel Biomarker Candidates in Alzheimer's Disease.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

[14398] doi:10.34133/cbsystems.0336 [paper, repository]

Dynamic Network Plasticity and Sample Efficiency in Biological Neural Cultures: A Comparative Study with Deep Reinforcement Learning.

Journal: Cyborg and bionic systems (Washington, D.C.)

Authors' code: OSF cnpzf (no license)

Status: code verified, 34 files readable

[14399] doi:10.7554/elife.101440 [paper, repository]

Odors drive feeding through gustatory receptor neurons in <i>Drosophila</i>.

Journal: eLife

Authors' code: hpwei82/2022_hpwei (MIT)

Status: code verified, 19 files readable, 5 matches

Sunday, 3 August 2025 (10 papers)

[14400] doi:10.1038/s41467-025-62491-6 [paper, repository]

Using an ordinary differential equation model to separate rest and task signals in fMRI.

Journal: Nature communications

Authors' code: sagastra/fMRI_SiNDy (no license)

Status: code verified, 6 files readable, 3 matches

[14401] doi:10.1038/s41467-025-62534-y [paper, repository]

Open-source, high performance miniature 2-photon microscopy systems for freely behaving animals.

Journal: Nature communications

Authors' code: golshanilab/UCLA_2P_Miniscope (GPL-3.0)

Status: code verified, 4 files readable, 3 matches

[14402] doi:10.1038/s41598-025-10073-3 [paper, data]

The transcriptome of the olm provides insights into its evolution and gene expression.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14403] doi:10.1038/s41598-025-13289-5 [paper, data]

Cross-subject EEG signals-based emotion recognition using contrastive learning.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14404] doi:10.1145/3711896.3737000 [paper, repository]

Identifying Combinatorial Regulatory Genes for Cell Fate Decision via Reparameterizable Subset Explanations.

Journal: KDD : proceedings. International Conference on Knowledge Discovery & Data Mining

Authors' code: Zenodo 15540910 (CC-BY-4.0), aicb-zhanglabs/metavelo (no license)

Status: code verified, 300 files readable, 2 matches

[14405] doi:10.3390/bioengineering12080840 [paper, data]

Deep Learning for Comprehensive Analysis of Retinal Fundus Images: Detection of Systemic and Ocular Conditions.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[14406] doi:10.3390/biom15081114 [paper, data]

Membrane-Type 5 Matrix Metalloproteinase (MT5-MMP): Background and Proposed Roles in Normal Physiology and Disease.

Journal: Biomolecules

Status: data only, 1 dataset cited

[14407] doi:10.3390/biom15081117 [paper, data]

Stable Dopamine-Signaling mRNA Co-Expression in the Substantia Nigra Is Deregulated in Pathological Conditions, but Not in Dopamine Transporter Knockout Rats.

Journal: Biomolecules

Status: data only, 1 dataset cited

[14408] doi:10.3390/ijms26157495 [paper]

Intermittent Hypoxia Induces Cognitive Dysfunction and Hippocampal Gene Expression Changes in a Mouse Model of Obstructive Sleep Apnea.

Journal: International journal of molecular sciences

Status: data only

[14409] doi:10.3390/s25154779 [paper, repository]

Steady-State Visual-Evoked-Potential-Driven Quadrotor Control Using a Deep Residual CNN for Short-Time Signal Classification.

Journal: Sensors (Basel, Switzerland)

Authors' code: raow923/EEGResNet (no license)

Status: code verified, 6 files readable, 3 matches

Saturday, 2 August 2025 (9 papers)

[14410] doi:10.1007/s00018-025-05823-5 [paper, repository]

Disruption of hnRNP A2-mediated RNA dynamics by amyloid-β drives MBP increase in Alzheimer's disease.

Journal: Cellular and molecular life sciences : CMLS

Authors' code: rodrisenovilla/Gaminde-Blasco2024 (no license)

Status: code verified, 3 files readable, 1 match

[14411] doi:10.1038/s41380-025-03133-7 [paper, repository]

Neurobiological subtypes of adolescent depression: a multimodal integration of morphometric similarity network and spatial transcriptomics.

Journal: Molecular psychiatry

Authors' code: evarol/HYDRA (other), SarahMorgan/Morphometric_Similarity_SZ (MIT)

Status: code verified, 7 files readable, 2 matches

[14412] doi:10.1038/s41467-025-62494-3 [paper, data]

Scn2a-linked myelination deficits and synaptic plasticity alterations drive auditory processing disorders in an ASD mouse model.

Journal: Nature communications

Status: data only, 1 dataset cited

[14413] doi:10.1038/s41467-025-62496-1 [paper, data]

Synaptotagmin-1 serves as a primary Zn<sup>2+</sup> sensor to mediate spontaneous neurotransmitter release under pathological conditions.

Journal: Nature communications

Status: data only, 3 datasets cited

[14414] doi:10.1038/s41539-025-00343-0 [paper]

The neurocognitive mechanism underlying math avoidance among math anxious people.

Journal: NPJ science of learning

Status: code on request

[14415] doi:10.1038/s41597-025-05671-9 [paper, repository]

Open access dataset integrating behavioral and EEG measures in Chinese spoken word production.

Journal: Scientific data

Authors' code: OSF nmke5 (no license)

Status: code verified, 3 files readable, 5 matches

[14416] doi:10.1038/s42003-025-08601-y [paper, repository]

Uncovering the role of directed connectivity in alpha and theta band activity for sustaining perception-action links.

Journal: Communications biology

Authors' code: OSF 79udf (no license)

Status: code verified, 29 files readable, 5 matches

[14417] doi:10.1186/s40708-025-00265-y [paper, data]

An automated extraction of spectral-temporal and spatial-temporal features of EEG for emotion detection.

Journal: Brain informatics

Status: data only, 1 dataset cited

[14418] doi:10.3390/antiox14080952 [paper, data]

Exploring the Impact of Bioactive Compounds Found in Extra Virgin Olive Oil on NRF2 Modulation in Alzheimer's Disease.

Journal: Antioxidants (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 1 August 2025 (98 papers)

[14419] doi:10.1002/alz.70296 [paper, data]

Performance of computed tomography and magnetic resonance morphometry in evaluating brain atrophy in Down syndrome.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[14420] doi:10.1002/alz.70544 [paper, repository]

Change points for dynamic biomarkers in the Alzheimer's disease pathological cascade: A 30-year cohort study.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: OishiLab/OpenMAP-T1 (other)

Status: code verified, 22 files readable, 1 match

[14421] doi:10.1002/alz.70545 [paper, repository]

Topological and geometric signatures of brain network dynamics in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: NrgXnat/oasis-scripts (no license), tinayiluo0322/ad-dfc-signatures (MIT)

Status: code verified, 23 files readable, 11 matches

[14422] doi:10.1002/alz.70551 [paper, repository]

Factors associated with age at tau pathology onset and time from tau onset to dementia in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Betthauser-Neuro-Lab/SILA-AD-Biomarker (GPL-3.0), adni.loni.usc.edu/data-samples/access-data (no license)

Status: code verified, 11 files readable, 1 match

[14423] doi:10.1002/alz.70612 [paper, repository]

Alzheimer's Disease Research Center Down Syndrome Cores: Experience from two sites.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: interscity/bike-science (MIT)

Status: code verified, 25 files readable

[14424] doi:10.1002/brb3.70695 [paper]

Altered Basal Ganglia Network Topology Associated With Auditory-Motor Synchronization.

Journal: Brain and behavior

Status: code on request

[14425] doi:10.1002/btm2.70058 [paper, data]

Multi-modal screening for synergistic neuroprotection of mild extremely preterm brain injury.

Journal: Bioengineering & translational medicine

Status: data only, 1 dataset cited

[14426] doi:10.1002/ctm2.70443 [paper, repository]

Integrative snRNA-seq, molecular docking and dynamics simulations identifies Lasmiditan as drug candidate for Alzheimer's disease.

Journal: Clinical and translational medicine

Authors' code: martintony4all/singlecellAD (no license), martintony4all/MolecularDynamicsSimulation (no license)

Status: code verified, 11 files readable, 10 matches

[14427] doi:10.1002/dvg.70021 [paper, data]

Tracing Early Migratory Neurons in the Developing Nose Using Contactin-2 (Cntn2) CreERT2.

Journal: Genesis (New York, N.Y. : 2000)

Status: data only, 1 dataset cited

[14428] doi:10.1002/hbm.70265 [paper, repository]

Enhanced Detection of Age-Related and Cognitive Declines Using Automated Hippocampal-To-Ventricle Ratio in Alzheimer's Patients.

Journal: Human brain mapping

Authors' code: soffiafdz/hvr_validation (GPL-3.0), hub.docker.com/repository/docker (no license)

Status: code verified, 66 files readable, 20 matches

[14429] doi:10.1002/hbm.70266 [paper, repository]

Precision Network Modeling of Transcranial Magnetic Stimulation Across Individuals Suggests Therapeutic Targets and Potential for Improvement.

Journal: Human brain mapping

Authors' code: thomasyeolab/cbig (MIT), cjl2007/Targeted-Functional-Network-Stimulation (no license), bucknerlab/PrecisionTMSPlanning (no license)

Status: code verified, 2,067 files readable, 18 matches

[14430] doi:10.1002/hbm.70276 [paper, repository]

Mind the Gap: Does Brain Age Improve Alzheimer's Disease Prediction?

Journal: Human brain mapping

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 2 matches

[14431] doi:10.1002/hbm.70280 [paper, repository]

Cross-Dataset Evaluation of Dementia Longitudinal Progression Prediction Models.

Journal: Human brain mapping

Authors' code: thomasyeolab/cbig (MIT), icm-institute/aramislab/leaspy (BSD-3-Clause), oasis-brains.org (no license)

Status: code verified, 2,191 files readable, 1 match

[14432] doi:10.1002/hbm.70281 [paper, repository]

Using Extreme Value Statistics to Reconceptualize Psychopathology as Extreme Deviations From a Normative Reference Model.

Journal: Human brain mapping

Authors' code: CharFraza/extremes_normative_modelling (no license), amarquand/PCNtoolkit (GPL-3.0)

Status: code verified, 126 files readable, 2 matches

[14433] doi:10.1002/hbm.70297 [paper, repository]

S-GMAS: Genome-Wide Mediation Analysis With Brain Subcortical Shape Mediators.

Journal: Human brain mapping

Authors' code: Naomi-Ding/S-GMAS (MIT)

Status: code verified, 7 files readable, 1 match

[14434] doi:10.1002/hbm.70302 [paper, repository]

Functionally Adaptive Structural Basis Sets of the Brain: A Dynamic Fusion Approach.

Journal: Human brain mapping

Authors' code: trendscenter.org/software (no license)

Status: code verified

[14435] doi:10.1002/hbm.70303 [paper, repository]

A Contrast-Agnostic Method for Ultra-High Resolution Claustrum Segmentation.

Journal: Human brain mapping

Authors' code: chiara-mauri/claustrum_segmentation (no license), hongweilibran/claustrum_multi_view (no license), BBillot/SynthSeg (Apache-2.0)

Status: code verified, 56 files readable, 5 matches

[14436] doi:10.1002/hbm.70304 [paper, data]

Aberrant Modular Dynamics of Functional Networks in Schizophrenia and Their Relationship With Neurotransmitter and Gene Expression Profiles.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[14437] doi:10.1002/hbm.70311 [paper, repository]

Assessing Arterial Patterns in the Motor Cortex With 7 Tesla Magnetic Resonance Imaging and Vessel Distance Mapping.

Journal: Human brain mapping

Authors' code: hendrikmattern/VesselDistanceMapping (GPL-3.0), Zenodo 15673561 (CC-BY-4.0)

Status: code verified, 12 files readable

[14438] doi:10.1002/hbm.70313 [paper, repository]

Estimating Brain Similarity Networks With Diffusion MRI.

Journal: Human brain mapping

Authors' code: ucsfncl/DSN (MIT)

Status: code verified, 3 files readable

[14439] doi:10.1002/hbm.70314 [paper, repository]

Relative Strength Variability Measures for Brain Structural Connectomes and Their Relationship With Cognitive Functioning.

Journal: Human brain mapping

Authors' code: hwyeung/relativestrengthvariability (no license)

Status: code verified, 20 files readable, 4 matches

[14440] doi:10.1002/hbm.70317 [paper, repository]

Towards an Informed Choice of Diffusion MRI Image Contrasts for Cerebellar Segmentation.

Journal: Human brain mapping

Authors' code: SlicerDMRI (no license)

Status: code verified

[14441] doi:10.1002/hbm.70318 [paper, repository]

Effects of Oral Contraceptive Pills on Brain Networks: A Conceptual Replication and Extension.

Journal: Human brain mapping

Authors' code: thomasyeolab/cbig (MIT), eamico/Psilocybin_fingerprints (MIT), HumanBrainZappingatUCLA/OCPRSNs (no license)

Status: code verified, 2,017 files readable, 2 matches

[14442] doi:10.1002/hbm.70323 [paper, repository]

Voxel-Wise or Region-Wise Nuisance Regression for Functional Connectivity Analyses: Does It Matter?

Journal: Human brain mapping

Authors' code: juaml/voxel-vs-region-denoising (no license), juaml/junifer (AGPL-3.0), juaml/julearn (AGPL-3.0)

Status: code verified, 463 files readable, 11 matches

[14443] doi:10.1002/hbm.70327 [paper, data]

Complex Rule Transfer Recruits Rostral Prefrontal and Ventromedial Prefrontal Neural Networks.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[14444] doi:10.1002/jdn.70044 [paper, data]

PGAP1-Related Encephalopathy in an Infant With Neurodevelopmental Delay: Novel Variant and Review of Literature.

Journal: International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience

Status: data only, 1 dataset cited

[14445] doi:10.1002/nbm.70079 [paper, repository]

Insights on Scan-Specific Deep-Learning Strategies for Brain MRI Parallel Imaging Reconstruction.

Journal: NMR in biomedicine

Authors' code: L2roche/cobrai_paper (CC-BY-NC-ND-4.0)

Status: code verified, 34 files readable, 5 matches

[14446] doi:10.1002/nbm.70087 [paper, repository]

Reliability and Reproducibility of Metabolite Quantification Using <sup>1</sup>H MRS in the Human Brain at 3 T and 7 T.

Journal: NMR in biomedicine

Authors' code: Zeinabeftekhari/SVS_STEAM-sLASER_3T-7T (BSD-3-Clause)

Status: code verified, 9 files readable, 3 matches

[14447] doi:10.1007/s10875-025-01906-x [paper, data]

β-Actin Deficiency in Baraitser-Winter Syndrome Type 1 Disrupts T-Cell Function and Immune Regulation: Implications for Targeted Therapy in Actinopathies.

Journal: Journal of clinical immunology

Status: data only, 2 datasets cited

[14448] doi:10.1016/j.cell.2025.06.031 [paper, repository]

Single-cell multiregion epigenomic rewiring in Alzheimer's disease progression and cognitive resilience.

Journal: Cell

Authors' code: ZunpengLiu/Multi-region_AD (MIT), kassambara/ggpubr (no license), swolock/scrublet (MIT), Teichlab/bbknn (MIT), bulik/ldsc (GPL-3.0), lhe17/nebula (other), sankaranlab/SCAVENGE (GPL-3.0)

Status: code verified, 336 files readable, 33 matches

[14449] doi:10.1016/j.molcel.2025.07.005 [paper, repository]

Chromatin-dependent motif syntax defines differentiation trajectories.

Journal: Molecular cell

Authors' code: macs3-project/macs (BSD-3-Clause), alexdobin/STAR (MIT)

Status: code verified, 545 files readable, 3 matches

[14450] doi:10.1016/j.xpro.2025.104010 [paper, repository]

Protocol to generate PDMS topographical patterns for hiPSC-derived or rat primary neuronal cultures.

Journal: STAR protocols

Authors' code: es.mathworks.com/products/matlab.html (no license), orlandi/netcal (MIT), Zenodo 1119026 (MIT)

Status: code verified, 2,374 files readable, 2 matches

[14451] doi:10.1017/s1355617725101446 [paper, data]

The role of age and physical fitness on the relationship between physical activity and executive function.

Journal: Journal of the International Neuropsychological Society : JINS

Status: code on request, 1 dataset cited

[14452] doi:10.1038/s41422-025-01157-w [paper]

Disturbed engram network caused by NPTX downregulation underlies aging-related contextual fear memory deficits.

Journal: Cell research

Status: code on request

[14453] doi:10.1038/s41467-025-61932-6 [paper, repository]

Cryo-EM structures of ρ1 GABA<sub>A</sub> receptors with antagonist and agonist drugs.

Journal: Nature communications

Authors' code: Zenodo 15328258 (CC-BY-4.0)

Status: code verified, 1 file readable

[14454] doi:10.1038/s41467-025-62187-x [paper, repository]

Aberrant pace of cortical neuron development in brain organoids from patients with 22q11.2 deletion syndrome-associated schizophrenia.

Journal: Nature communications

Authors' code: BinXBioLab/scRNAseq (no license), BinXBioLab/Rao_paper_code_files (no license)

Status: code verified, 1 file readable

[14455] doi:10.1038/s41467-025-62414-5 [paper, repository]

METTL9 sustains vertebrate neural development primarily via non-catalytic functions.

Journal: Nature communications

Authors' code: wilkelab/cowplot (no license)

Status: code verified, 52 files readable

[14456] doi:10.1038/s41598-025-12511-8 [paper, data]

The role of cognitive load in automatic integration of emotional information from face and body.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14457] doi:10.1038/s41598-025-12611-5 [paper, repository]

Short-term plasticity influences episodic memory recall: an interplay of synaptic traces in a spiking neural network model.

Journal: Scientific reports

Authors' code: Nikolaos-Chrysanthidis/Short-term-plasticity-influences-episodic-memory-recall (no license)

Status: code verified, 1 file readable

[14458] doi:10.1038/s41598-025-13233-7 [paper, data]

Transparent brain tumor detection using DenseNet169 and LIME.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14459] doi:10.1038/s42003-025-08528-4 [paper, repository]

Revised cytoarchitectonic mapping of the human premotor cortex identifies seven areas and refines the localisation of frontal eye fields.

Journal: Communications biology

Authors' code: INM-1-FZJ-Cytoarchitecture/Figure_Template_Brain_with_coords (no license), figshare 3501911 (CC-BY-4.0), siibra-python.readthedocs.io (no license)

Status: code verified, 12 files readable, 1 match

[14460] doi:10.1038/s42003-025-08580-0 [paper, repository]

Associative coding of conditioned fear in the thalamic nucleus reuniens in rodents and humans.

Journal: Communications biology

Authors' code: marenlab/Aversive-Coding-in-the-Reuniens (no license)

Status: code verified, 5 files readable, 1 match

[14461] doi:10.1039/d5sc00494b [paper, repository]

An explainable "family bucket" model for simultaneous prediction of K-edge XANES for multiple light transition metals.

Journal: Chemical science

Authors' code: Shaoruisun/Light-Transition-Metals-K-edge-XANES (no license)

Status: code verified, 13 files readable, 1 match

[14462] doi:10.1073/pnas.2501578122 [paper, repository]

Orexin effect on physiological pulsations of the human brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: mattijar/ofni (other)

Status: code verified, 2 files readable

[14463] doi:10.1093/bib/bbaf490 [paper, repository]

DeCoST: unveiling cell type heterogeneity in spatial transcriptomics based on inter-domain alignment and Gaussian kernel conditional autoregressive.

Journal: Briefings in bioinformatics

Authors' code: LiangYu-Xidian/DeCoST (no license)

Status: code verified, 3 files readable, 2 matches

[14464] doi:10.1093/cercor/bhaf195 [paper, repository]

Movement representations in motor, somatosensory, and posterior parietal cortex of the greater galago.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: ff6347/Illustrator-Javascript-Voronoi (MIT)

Status: code verified, 7 files readable

[14465] doi:10.1093/cercor/bhaf203 [paper, repository]

Activity of CaMKII-expressing neurons in medial prefrontal cortex of male and female Long-Evans rats is necessary for encoding odor information and novelty recognition in an odor-based incidental memory test.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: dterstege/publicationrepo (no license)

Status: code verified, 15 files readable, 4 matches

[14466] doi:10.1093/cercor/bhaf208 [paper, repository]

Decoding semantic sound categories in early visual cortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Muckli-lab/MVP-analysis-tool-box (MIT)

Status: code verified, 36 files readable, 3 matches

[14467] doi:10.1093/cercor/bhaf218 [paper]

Sex and age differences on how testosterone relates to brain activity during working memory among adolescents and young adults.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[14468] doi:10.1093/cercor/bhaf231 [paper, repository]

Brain activation for language and its relationship to cognitive and linguistic measures.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 5464749 (CC-BY-4.0)

Status: empty repository

[14469] doi:10.1093/cercor/bhaf237 [paper]

Cortical response to transient and long-term visual field loss.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[14470] doi:10.1093/cercor/bhaf244 [paper, data]

Neural alpha oscillations and auditory steady-state responses during adaptation to a cochlear implant.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[14471] doi:10.1093/cercor/bhaf246 [paper, repository]

Compositionality in the semantic network: a model-driven representational similarity analysis.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF 3dnqg (no license)

Status: code verified, 30 files readable, 8 matches

[14472] doi:10.1093/cercor/bhaf251 [paper, repository]

Neural correlates of Bayesian social belief updating in the medial prefrontal cortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF scywf (no license)

Status: empty repository

[14473] doi:10.1093/nar/gkaf785 [paper, repository]

The kinase GSK-3 alters the RNA-binding protein landscape of lipid metabolism transcripts leading to altered expression in the C. elegans nervous system.

Journal: Nucleic acids research

Authors' code: ananya716/gsf3874-ems-pilot (no license), Zenodo 16378230 (CC-BY-4.0), Zenodo 16364942 (CC-BY-4.0)

Status: code verified, 5 files readable

[14474] doi:10.1093/nar/gkaf794 [paper, repository]

Sm-site containing mRNAs can accept Sm-rings and are downregulated in Spinal Muscular Atrophy.

Journal: Nucleic acids research

Authors' code: ajblatnik/sm_ring_assembly_mrna (no license), Zenodo 15476098 (CC-BY-4.0)

Status: code verified, 40 files readable, 29 matches

[14475] doi:10.1101/gr.279584.124 [paper, data]

A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq.

Journal: Genome research

Status: data only, 1 dataset cited

[14476] doi:10.1101/gr.280219.124 [paper, repository]

Oxygen-induced stress reveals context-specific gene regulatory effects in human brain organoids.

Journal: Genome research

Authors' code: bumans/organoid_oxygen_eqtl (MIT)

Status: code verified, 40 files readable, 7 matches

[14477] doi:10.1111/adb.70056 [paper, repository]

Machine Learning Classification of Smoking Behaviours-From Social Environment to the Prefrontal Cortex.

Journal: Addiction biology

Authors' code: Zenodo 15477769 (CC-BY-4.0), pabloreinhardt/work (no license)

Status: code verified, 10 files readable, 3 matches

[14478] doi:10.1111/adb.70075 [paper, repository]

Grey Matter Volume in Substance Use: A Preregistered, Dimensional Approach to Disentangle Substance Use and Disorder Severity.

Journal: Addiction biology

Authors' code: OSF bz75k (no license)

Status: code verified, 2 files readable, 1 match

[14479] doi:10.1111/adb.70077 [paper, data]

Brain Transcriptome Analysis Reveals Exercise Improves Methamphetamine-Induced Impairments in Mouse Learning and Memory Abilities.

Journal: Addiction biology

Status: data only, 1 dataset cited

[14480] doi:10.1111/age.70034 [paper, data]

Genomic imprinting at a porcine ZNF locus via a canonical imprinting mechanism.

Journal: Animal genetics

Status: data only, 1 dataset cited

[14481] doi:10.1111/cns.70454 [paper, data]

A Decoy Oligodeoxynucleotides Disturbing Forkhead Box O3 Mediated ctnna2 Transcriptional Repression Prevents Postoperative Neurocognitive Disorder in Mice.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[14482] doi:10.1111/cns.70560 [paper]

PRG-1 Relieves Neonatal Stimuli-Induced Hyperalgesia and Anxiety via Stage-Specific Synapse Remodeling.

Journal: CNS neuroscience & therapeutics

Status: code on request

[14483] doi:10.1111/cns.70562 [paper, repository]

Sex Differences in Functional Gradients and Dynamic Functional Connectivity in Preschool-Aged Children With ASD.

Journal: CNS neuroscience & therapeutics

Authors' code: nemowgr/Machine-learning-models (MIT)

Status: empty repository, 1 file readable

[14484] doi:10.1111/cns.70586 [paper, repository]

Triptolide Inhibits Epileptic Seizures by Rescuing the Neuroinflammation-Related GABAergic Dysfunction in Mice.

Journal: CNS neuroscience & therapeutics

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[14485] doi:10.1111/ejn.70180 [paper, repository]

Amyloid-Beta Pathology Increases Synaptic Engulfment by Glia in Feline Cognitive Dysfunction Syndrome: A Naturally Occurring Model of Alzheimer's Disease.

Journal: The European journal of neuroscience

Authors' code: Spires-Jones-Lab (no license)

Status: code verified

[14486] doi:10.1111/ejn.70207 [paper, repository]

Bridging Conflicting Views on Eye Position Signals: A Neurocomputational Approach to Perisaccadic Perception: Eye Position Information in Brain and Model.

Journal: The European journal of neuroscience

Authors' code: hamkerlab/Stocks2025_Eye_Position_Decoder (no license)

Status: code verified, 8 files readable, 3 matches

[14487] doi:10.1111/ejn.70219 [paper]

Peak Alpha Frequency Is Not Significantly Altered by Five Days of Experimental Pain and Repetitive Transcranial Stimulation of the Left Dorsolateral Prefrontal Cortex.

Journal: The European journal of neuroscience

Status: code on request

[14488] doi:10.1111/ejn.70242 [paper, repository]

Laughter as a Subject and a Tool for Interdisciplinary Investigations in Philosophy and Neuroscience.

Journal: The European journal of neuroscience

Authors' code: OSF nfbux (no license)

Status: code verified, 1 file readable

[14489] doi:10.1111/gbb.70031 [paper, repository]

Simultaneous RNA Sequencing and DNA Methylation Profiling Reveals Neural Mechanisms That Regulate Sensitive Period Behavioral Learning.

Journal: Genes, brain, and behavior

Authors' code: chrisbalakrishnan/SensitivePeriod (no license)

Status: code verified, 2 files readable

[14490] doi:10.1111/jcmm.70749 [paper, data]

New Diagnostic and Therapeutic Targets for Spinal Cord Injury: GRN Gene.

Journal: Journal of cellular and molecular medicine

Status: data only, 1 dataset cited

[14491] doi:10.1111/nan.70033 [paper, repository]

Standardised TruAI Automated Quantification of Intracellular Neuromelanin Granules in Human Brain Tissue Sections.

Journal: Neuropathology and applied neurobiology

Authors' code: zchatt/neuromelanin (no license), Zenodo 14523067 (CC-BY-4.0), Zenodo 10494622 (CC-BY-4.0), Zenodo 14166452 (MIT), Zenodo 14166453 (MIT)

Status: code verified, 10 files readable

[14492] doi:10.1111/psyp.70114 [paper, data]

Conflicting Motor Plans and Sensory Attenuation: Evidence From Event-Related Potentials for Sounds Generated by Pro- and Antisaccades.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[14493] doi:10.1111/psyp.70119 [paper, data]

Pupil Fluctuations Signal Intentional Forgetting of Natural Scenes.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[14494] doi:10.1111/psyp.70122 [paper, repository]

How Do Humans Process Audiovisual Cues for Task-Switching While Walking? An EEG/ERP Study.

Journal: Psychophysiology

Authors' code: julianreiser/grail_switch (CC0-1.0)

Status: code verified, 23 files readable, 4 matches

[14495] doi:10.1111/psyp.70125 [paper, repository]

Individual Differences in Statistical Learning and Semantic Adaptation: An N400 Study.

Journal: Psychophysiology

Authors' code: OSF 4nm8v (no license)

Status: empty repository

[14496] doi:10.1111/psyp.70130 [paper, data]

Narcissistic and Antisocial Personality Traits Are Both Encoded in the Triple Network: Connectomics Evidence.

Journal: Psychophysiology

Status: data only, 2 datasets cited

[14497] doi:10.1113/ep092792 [paper, data]

Bioenergetic profiles and respiratory control in mitochondrial physiology: Precision analysis of oxidative phosphorylation.

Journal: Experimental physiology

Status: data only, 1 dataset cited

[14498] doi:10.1121/10.0038746 [paper, data]

A comparison of electrophysiological measures for characterizing the cochlear-implant electrode-neuron interface.

Journal: JASA express letters

Status: data only, 1 dataset cited

[14499] doi:10.1126/sciadv.adv2902 [paper, data]

Glia-derived noncanonical fatty acid binding protein modulates brain lipid storage and clearance.

Journal: Science advances

Status: data only, 1 dataset cited

[14500] doi:10.1158/1078-0432.ccr-24-1256 [paper, data]

The Spectrum of IDH- and H3-Wildtype High-Grade Glioma Subgroups Occurring across Teenage and Young Adult Patient Populations.

Journal: Clinical cancer research : an official journal of the American Association for Cancer Research

Status: data only, 2 datasets cited

[14501] doi:10.1158/1078-0432.ccr-24-4159 [paper, repository]

Solid Stress Estimations via Intraoperative 3D Navigation in Patients with Brain Tumors.

Journal: Clinical cancer research : an official journal of the American Association for Cancer Research

Authors' code: elsteelelabs/brainsolidstress (no license)

Status: code verified, 1 file readable

[14502] doi:10.1158/2159-8290.cd-25-0074 [paper, repository]

Detection of Brain Cancer Using Genome-wide Cell-free DNA Fragmentomes.

Journal: Cancer discovery

Authors' code: cancer-genomics/reproduce_brain_wflow (no license), cancer-genomics/reproduce_lucas_wflow (GPL-3.0), cancer-genomics/artemis2024 (GPL-3.0)

Status: code verified, 227 files readable, 12 matches

[14503] doi:10.1162/imag.a.95 [paper, repository]

Local response function estimation in spherical deconvolution for comprehensive tissue representation using diffusion MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: SiebeLeysen/LoRE-SD (no license)

Status: code verified, 26 files readable, 10 matches

[14504] doi:10.1167/jov.25.10.15 [paper, repository]

Where do I go? Decoding temporal neural dynamics of scene processing and visuospatial memory interactions using convolutional neural networks.

Journal: Journal of vision

Authors' code: OSF 5cqxy (no license)

Status: empty repository

[14505] doi:10.1167/tvst.14.8.38 [paper, repository]

Myopic-Net: Deep Learning-Based Direct Identification of Myopia Onset and Progression.

Journal: Translational vision science & technology

Authors' code: ZengshuoWang/Myopic-Net (MIT)

Status: code verified, 21 files readable, 1 match

[14506] doi:10.1177/08977151251361700 [paper, repository]

Risk of Mortality Among Adult Females Diagnosed with Traumatic Brain Injury in an Academic Medical System.

Journal: Neurotrauma reports

Authors' code: bolandlab/TBI_Definition (no license), bolandlab (no license)

Status: code verified, 1 file readable

[14507] doi:10.1186/s10194-025-02122-z [paper, data]

Network control theory uncovers aberrant connectome controllability in trigeminal neuralgia.

Journal: The journal of headache and pain

Status: data only, 1 dataset cited

[14508] doi:10.1186/s12964-025-02312-x [paper, repository]

Synergic action of MicroRNAs and Wnts delivered by motor neuron EVs in promoting AChR clustering.

Journal: Cell communication and signaling : CCS

Authors' code: www-huber.embl.de/htseq (no license)

Status: code found, still to be checked

[14509] doi:10.1242/bio.062014 [paper, data]

SOX2 and NR2F1 coordinate the gene expression program of the early postnatal visual thalamus.

Journal: Biology open

Status: data only, 2 datasets cited

[14510] doi:10.1242/dmm.052358 [paper, data]

Evidence of neuronal DNA damage in the brains of patients with Rett syndrome.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[14511] doi:10.1242/jcs.263938 [paper, data]

Piezo1 balances membrane and cortex tension to stabilize intercellular junctions and maintain the epithelial barrier.

Journal: Journal of cell science

Status: data only, 1 dataset cited

[14512] doi:10.1371/journal.pcbi.1013304 [paper, repository]

Continual familiarity decoding from recurrent connections in spiking networks.

Journal: PLoS computational biology

Authors' code: rainsummer613/spiking-continual-familiarity (no license), Zenodo 15547044 (CC-BY-4.0)

Status: code verified, 15 files readable, 9 matches

[14513] doi:10.24072/pcjournal.592 [paper, repository]

Activity in serotonergic axons in visuomotor areas of cortex is modulated by the recent history of visuomotor coupling.

Journal: Peer community journal

Authors' code: Zenodo 15236242 (CC-BY-4.0)

Status: code verified

[14514] doi:10.3389/fphar.2025.1635897 [paper, data]

Modulation of gut microbiota by Gardeniae Fructus oil exerts TLR4/NF-κB/NLRP3 pathway-mediated antidepressant effects based on transcriptomics and fecal transplantation.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[14515] doi:10.3390/ijms26157411 [paper, data]

Elevated Antigen-Presenting-Cell Signature Genes Predict Stemness and Metabolic Reprogramming States in Glioblastoma.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[14516] doi:10.7554/elife.105955 [paper, data]

Separable dorsal raphe dopamine projections mimic the facets of a loneliness-like state.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 31 July 2025 (28 papers)

[14517] doi:10.1016/j.celrep.2025.116064 [paper, data]

Aggrecan protects against plaque accumulation and is essential for proper microglial responses to plaques.

Journal: Cell reports

Status: code on request, 1 dataset cited

[14518] doi:10.1016/j.isci.2025.113248 [paper, repository]

Elovl1 inhibition reduced very long chain fatty acids in a mouse model of adrenoleukodystrophy.

Journal: iScience

Authors' code: Zenodo 15127236 (CC-BY-4.0)

Status: code verified, 8 files readable, 3 matches

[14519] doi:10.1016/j.isci.2025.113255 [paper]

Tissue stiffness controls neuroblast migratory behavior and reprogramming during myelin repair.

Journal: iScience

Status: code on request

[14520] doi:10.1016/j.media.2025.103734 [paper, repository]

Brain Latent Progression: Individual-based spatiotemporal disease progression on 3D Brain MRIs via latent diffusion.

Journal: Medical image analysis

Authors' code: project-monai/generativemodels (Apache-2.0)

Status: code verified, 144 files readable, 3 matches

[14521] doi:10.1016/j.neuroimage.2025.121408 [paper, repository]

Time-resolved large-scale neural coactivations in macaque monkey.

Journal: NeuroImage

Authors' code: Donders-Institute/bidscoin (GPL-3.0)

Status: code verified, 61 files readable

[14522] doi:10.1016/j.schres.2025.07.020 [paper, repository]

The role of the electroencephalogram (EEG) in determining the aetiology of psychosis: a systematic review and meta-analysis of diagnostic test accuracy.

Journal: Schizophrenia research

Authors' code: OSF pj6nc (no license)

Status: code verified, 3 files readable, 5 matches

[14523] doi:10.1016/j.stemcr.2025.102595 [paper]

Establishment of neuronal and glial competence of neural stem cells requires distinct enzymatic activities of TET enzymes.

Journal: Stem cell reports

Status: code on request

[14524] doi:10.1016/j.stemcr.2025.102597 [paper]

Modeling glioma intratumoral heterogeneity with primary human neural stem and progenitor cells.

Journal: Stem cell reports

Status: code on request

[14525] doi:10.1038/s41467-025-62253-4 [paper, data]

Differential impacts of social isolation and enriched environment on multi-sensory brain-wide functionality and network segregation.

Journal: Nature communications

Status: code on request, 3 datasets cited

[14526] doi:10.1038/s41467-025-62265-0 [paper, repository]

A role for the thalamus in danger evoked awakening during sleep.

Journal: Nature communications

Authors' code: ZENLabCode (no license), Zenodo 15467591 (CC-BY-4.0), zenlabcode/audioephys (no license)

Status: code verified, 16 files readable

[14527] doi:10.1038/s41597-025-05696-0 [paper, repository]

Dataset of binocularly coded steady-state visual evoked potentials recorded with an augmented reality headset.

Journal: Scientific data

Authors' code: figshare 26768287 (CC-BY-4.0)

Status: code verified, 18 files readable, 8 matches

[14528] doi:10.1038/s41598-025-08965-5 [paper, data]

Distinct patterns of visuo-tactile and visuo-motor body-related integration in Parkinson's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14529] doi:10.1038/s41598-025-12003-9 [paper, repository]

Mixture-of-experts graph transformers for interpretable particle collision detection.

Journal: Scientific reports

Authors' code: donatellagenovese/mixture-of-expert-graph-transformer (no license)

Status: code verified, 13 files readable, 8 matches

[14530] doi:10.1038/s42003-025-08569-9 [paper]

Temporal asymmetry of neural pattern similarity predicts recognition memory decisions.

Journal: Communications biology

Status: code on request

[14531] doi:10.1073/pnas.2502424122 [paper, repository]

Neuronal processes contain the essential components for the late steps of ribosome biogenesis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: gitlab.mpcdf.mpg.de/mpibr/schu/trnatools (no license)

Status: code verified, 48 files readable, 1 match

[14532] doi:10.1101/2025.07.26.666983 [paper, data]

Transsaccadic working memory in healthy ageing and neurodegenerative disease

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[14533] doi:10.1101/2025.07.27.662958 [paper, repository]

Human escape in freely moving virtual reality follows a structured movement pattern shaped by threat and context

Journal: bioRxiv (preprint)

Authors' code: OSF pmdjt (no license), bachlab/vrthreat (GPL-3.0)

Status: code verified, 27 files readable, 2 matches

[14534] doi:10.1107/s1600577525005843 [paper]

3DMPR - a robust morphological approach for applying phase retrieval in proximity to highly attenuating objects in computed tomography.

Journal: Journal of synchrotron radiation

Status: code on request

[14535] doi:10.1113/jp287624 [paper, repository]

Mathematical model of the zebrafish ventricular cardiomyocyte action potential and calcium transient.

Journal: The Journal of physiology

Authors' code: jfrodrig1971/Zebrafish (no license)

Status: code verified

[14536] doi:10.1126/science.adk3079 [paper, repository]

Altered translation elongation contributes to key hallmarks of aging in the killifish brain.

Journal: Science (New York, N.Y.)

Authors' code: leejh11/riboseq_analysis (no license), gitlab.leibniz-fli.de/ddifraia/multiomics-r-package (no license), Zenodo 15161061 (CC-BY-4.0)

Status: code verified, 94 files readable, 23 matches

[14537] doi:10.1126/science.adx2143 [paper, repository]

Comparative connectomics of two distantly related nematode species reveals patterns of nervous system evolution.

Journal: Science (New York, N.Y.)

Authors' code: stevenjcook/cook_et_al_2024_mipristionchus (no license), stevenjcook/cook_et_al_2025_pristionchus (MIT)

Status: code verified, 10 files readable, 8 matches

[14538] doi:10.1162/imag.a.89 [paper, data]

An fMRI study of initiation and inhibition of manual and spoken responses in people who stutter.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[14539] doi:10.1186/s12880-025-01836-5 [paper, repository]

TA-SSM net: tri-directional attention and structured state-space model for enhanced MRI-Based diagnosis of Alzheimer's disease and mild cognitive impairment.

Journal: BMC medical imaging

Authors' code: BAOZXX/TA-SSM (no license)

Status: code verified, 51 files readable, 2 matches

[14540] doi:10.1186/s12880-025-01837-4 [paper]

A brain tumor segmentation enhancement in MRI images using U-Net and transfer learning.

Journal: BMC medical imaging

Status: code on request

[14541] doi:10.1371/journal.pone.0326692 [paper, data]

Uncovering locomotor learning dynamics in people with Parkinson's disease.

Journal: PloS one

Status: data only, 1 dataset cited

[14542] doi:10.3389/fneur.2025.1599351 [paper]

Blast exposure and long-term diagnoses among veterans: a millennium cohort study investigation of high-level blast and low-level blast.

Journal: Frontiers in neurology

Status: code on request

[14543] doi:10.3389/fneur.2025.1627528 [paper, repository]

High-gamma and beta bursts in the left supramarginal gyrus can differentiate verbal memory states and performance.

Journal: Frontiers in neurology

Authors' code: nsawczuk/iEEG-experiments (no license)

Status: code verified, 14 files readable, 8 matches

[14544] doi:10.3390/bioengineering12080832 [paper, repository]

Dynamic Graph Convolutional Network with Dilated Convolution for Epilepsy Seizure Detection.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: Open-EMG/DGDCN (no license)

Status: code verified, 39 files readable, 3 matches

Wednesday, 30 July 2025 (39 papers, 16 on this page)

[14545] doi:10.1002/glia.70049 [paper, repository]

Mutations in GFAP Alter Early Lineage Commitment of Organoids.

Journal: Glia

Authors' code: LabGenExp/hiPSC-derived_early_AxD_organoids (no license)

Status: code verified, 4 files readable, 5 matches

[14546] doi:10.1007/s41666-025-00208-6 [paper, repository]

Multi-Cohort Federated Learning Shows Synergy in Mortality Prediction for MRI-Based and Metabolomics-Based Age Scores.

Journal: Journal of healthcare informatics research

Authors' code: NCDC-usecase1 (no license)

Status: code verified

[14547] doi:10.1007/s41666-025-00209-5 [paper, repository]

A Hybrid Bidirectional Deep Learning Model Using HRV for Prediction of ICU Mortality Risk in TBI Patients.

Journal: Journal of healthcare informatics research

Authors' code: HasiUdayangi/TBI-HRV-Prediction (no license)

Status: code verified, 20 files readable, 13 matches

[14548] doi:10.1016/j.bpsgos.2025.100576 [paper, data]

Decreased Cerebral Blood Flow in Young Children With Prenatal Alcohol Exposure.

Journal: Biological psychiatry global open science

Status: data only, 1 dataset cited

[14549] doi:10.1016/j.crmeth.2025.101116 [paper]

AAV vectors for specific and efficient gene expression in microglia.

Journal: Cell reports methods

Status: code on request

[14550] doi:10.1016/j.isci.2025.113215 [paper]

Ccp1 depletion disrupts network integration of hippocampal parvalbumin interneurons.

Journal: iScience

Status: code on request

[14551] doi:10.1016/j.isci.2025.113237 [paper, data]

Biomarkers for early detection and monitoring of abnormal brain development in mild fetal growth restriction.

Journal: iScience

Status: code on request, 1 dataset cited

[14552] doi:10.1016/j.mex.2025.103546 [paper, data]

Visual and motor skills development in preterm and full-term infants: A protocol for longitudinal data collection.

Journal: MethodsX

Status: data only, 1 dataset cited

[14553] doi:10.1016/j.nbas.2025.100147 [paper, repository]

Identification of novel candidate loci for Alzheimer's disease and related dementias by leveraging the shared genetic basis with hippocampal volume.

Journal: Aging brain

Authors' code: Cloufield/gwaslab (GPL-3.0)

Status: code verified, 48 files readable

[14554] doi:10.1021/jasms.5c00207 [paper, repository]

SynchroSep-MS: Parallel LC Separations for Multiplexed Proteomics.

Journal: Journal of the American Society for Mass Spectrometry

Authors' code: coongroup/SynchroSep-MS (no license)

Status: code verified, 14 files readable, 6 matches

[14555] doi:10.1038/s41467-025-61744-8 [paper, repository]

Evidence accumulation in the pre-supplementary motor area and insula drives confidence and changes of mind.

Journal: Nature communications

Authors' code: OSF 2kt97 (no license)

Status: empty repository

[14556] doi:10.1038/s41467-025-61829-4 [paper, data]

Dual lineage origins contribute to neocortical astrocyte diversity.

Journal: Nature communications

Status: data only, 3 datasets cited

[14557] doi:10.1038/s41467-025-62202-1 [paper, repository]

Spiking dynamics of individual neurons reflect changes in the structure and function of neuronal networks.

Journal: Nature communications

Authors' code: ruocheny/neuronal-networks-spiking (MIT)

Status: code verified, 18 files readable, 5 matches

[14558] doi:10.1038/s41551-025-01465-x [paper, repository]

Non-invasive characterization of pericyte dysfunction in mouse brain using functional ultrasound localization microscopy.

Journal: Nature biomedical engineering

Authors' code: mathworks.com/matlabcentral/fileexchange (no license), tinevez/simpletracker (BSD-3-Clause)

Status: code verified, 6 files readable, 1 match

[14559] doi:10.1038/s41586-025-09336-w [paper, repository]

Remodelling of corticostriatal axonal boutons during motor learning.

Journal: Nature

Authors' code: Zenodo 15179158 (CC-BY-4.0), Zenodo 15183635 (CC-BY-4.0)

Status: code verified

[14560] doi:10.1038/s41593-025-02022-0 [paper, repository]

An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus.

Journal: Nature neuroscience

Authors' code: erik-d-nelson/arg_hpc_snrnaseq (no license), zhoujt1994/epiretroseq2023 (MIT), bioconductor.org/packages/humanhippocampus2024 (no license), LieberInstitute/spatial_hpc (no license), Zenodo 15282862 (CC-BY-4.0)

Status: code verified, 457 files readable, 40 matches

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