Every paper, by date: page 64

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 64 of 200: 13 August 2025 to 5 August 2025.

Wednesday, 13 August 2025 (46 papers, 8 on this page)

[14113] doi:10.3389/fncel.2025.1661231 [paper, data]

Underestimation of mitochondrial respiratory capacity in gray matter voxels of the human brain map due to limited OXPHOS and TCA cycle in astrocytes.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[14114] doi:10.3389/fncom.2025.1639829 [paper, data]

Maximum likelihood estimation of spatially dependent interactions in large populations of cortical neurons.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[14115] doi:10.3389/fncom.2025.1662598 [paper, repository]

The improved thalamo-cortical spiking network model of deep brain stimulation.

Journal: Frontiers in computational neuroscience

Authors' code: aafarokh/TCM_DBS (no license)

Status: dead link

[14116] doi:10.3389/fnins.2025.1612271 [paper, repository]

Globus pallidus externus correlates with arousal in disorders of consciousness: a resting-state functional MRI study.

Journal: Frontiers in neuroscience

Authors' code: xusunautumnfrost/gpe (no license)

Status: empty repository, 1 file readable

[14117] doi:10.3389/fnins.2025.1614468 [paper, repository]

Computational modeling of visual salience alteration and its application to eye-movement data.

Journal: Frontiers in neuroscience

Authors' code: fujitaysim/saliency_map (no license)

Status: code verified, 12 files readable, 8 matches

[14118] doi:10.3758/s13415-025-01337-6 [paper, data]

Neuromodulation of prefrontal cortex promotes deep processing during language comprehension: a tDCS/EEG study.

Journal: Cognitive, affective & behavioral neuroscience

Status: data only, 1 dataset cited

[14119] doi:10.4103/nrr.nrr-d-24-01540 [paper, data]

Inductive analysis of the spatial distribution characteristics of neurons that innervate skeletal muscle and their correlation with muscle phenotype.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[14120] doi:10.7554/elife.100890 [paper, data]

A pair of dopaminergic neurons DAN-c1 mediate <i>Drosophila</i> larval aversive olfactory learning through D2-like receptors.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 12 August 2025 (43 papers)

[14121] doi:10.1007/s00429-025-02994-6 [paper, repository]

Gray matter abnormalities in sight deprivation and sight restoration.

Journal: Brain structure & function

Authors' code: OSF brsp2 (no license)

Status: code verified, 13 files readable, 6 matches

[14122] doi:10.1007/s10334-025-01284-w [paper, repository]

Polar Fourier transform in practice: its efficiency and characteristics in reconstructing radially acquired MRI images.

Journal: Magma (New York, N.Y.)

Authors' code: Nasiraei/pft-radial-mri-magma-2025 (MIT)

Status: code verified, 3 files readable

[14123] doi:10.1016/j.celrep.2025.116148 [paper]

High-speed voltage imaging of action potentials in molecular layer interneurons reveals sensory-driven synchrony that augments movement.

Journal: Cell reports

Status: code on request

[14124] doi:10.1016/j.clinph.2025.2110972 [paper, repository]

Timing of implicit processes in aphasia: An event-related potential investigation of masked priming effects.

Journal: Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology

Authors' code: OSF 2rqny (no license)

Status: code verified, 11 files readable, 6 matches

[14125] doi:10.1016/j.isci.2025.113344 [paper]

Enriched environment requires the remodeling of hippocampal perineuronal nets to trigger memory improvement in Alzheimer's mouse model.

Journal: iScience

Status: code on request

[14126] doi:10.1016/j.str.2025.07.014 [paper]

Cryo-EM structure of the vault from human brain reveals symmetry mismatch at its caps.

Journal: Structure (London, England : 1993)

Status: code on request

[14127] doi:10.1016/j.tjnut.2025.08.012 [paper]

Vitamin B-6 Deficiency Induces Anxiety-Like Behavior in Sprague-Dawley Rats by Disrupting Gut Homeostasis.

Journal: The Journal of nutrition

Status: code on request

[14128] doi:10.1021/acs.jmedchem.5c00604 [paper, data]

Conformational Restriction of Designer Drugs Reveals Subtype-Selective and Biased CB<sub>2</sub> Agonists with Neuroprotective Effects.

Journal: Journal of medicinal chemistry

Status: data only, 1 dataset cited

[14129] doi:10.1021/acs.jmedchem.5c01073 [paper, data]

N-Heterocyclic Carbenes as Ligands to ¹⁹⁸Au(I)-Radiolabeled Compounds: A New Platform for Radiopharmaceutical Design.

Journal: Journal of medicinal chemistry

Status: data only, 2 datasets cited

[14130] doi:10.1021/acsomega.5c03477 [paper, data]

Genome-Wide Identification of Microglia-Related RNA-Binding Proteins and Regulated Alternative Splicing in Spinal Cord Injury.

Journal: ACS omega

Status: data only, 1 dataset cited

[14131] doi:10.1038/s41398-025-03485-2 [paper]

The effects of the COVID-19 pandemic on neurobiological functioning in adolescents.

Journal: Translational psychiatry

Status: code on request

[14132] doi:10.1038/s41467-025-62498-z [paper, repository]

Time cell sequences during delay intervals are not dependent on brain state and do not support hippocampus-dependent working memory.

Journal: Nature communications

Authors' code: LiYuan-001/Time-cell-sequences-during-delay-intervals-are-not-dependent-on-brain-states (no license), Zenodo 15833196 (CC-BY-4.0)

Status: code verified, 468 files readable, 8 matches

[14133] doi:10.1038/s41467-025-62579-z [paper, repository]

Improving reproducibility of differentially expressed genes in single-cell transcriptomic studies of neurodegenerative diseases through meta-analysis.

Journal: Nature communications

Authors' code: nathan-nakatsuka/scRNA_Reproducibility (Apache-2.0), Zenodo 15809261 (Apache-2.0)

Status: code verified, 32 files readable, 14 matches

[14134] doi:10.1038/s41467-025-62733-7 [paper, repository]

Reconciling flexibility and efficiency: medial entorhinal cortex represents a compositional cognitive map.

Journal: Nature communications

Authors' code: Zenodo 15811496 (CC-BY-4.0), payampiray/compositional-predictive-map (MIT)

Status: code verified, 177 files readable, 5 matches

[14135] doi:10.1038/s41467-025-62758-y [paper, repository]

REST/NRSF Preserves muscle stem cell identity by repressing alternate cell fate.

Journal: Nature communications

Authors' code: Zenodo 14283461 (CC-BY-4.0)

Status: code verified, 20 files readable, 18 matches

[14136] doi:10.1038/s41467-025-62766-y [paper, repository]

Trans-synaptic molecular context of NMDA receptor nanodomains.

Journal: Nature communications

Authors' code: jungmannlab/picasso (MIT), blanpiedlab (no license), r0zita (no license)

Status: code verified, 126 files readable, 6 matches

[14137] doi:10.1038/s41467-025-62805-8 [paper, data]

Lipid interactions and gating hysteresis suggest a physiological role for mechanosensitive channel YnaI.

Journal: Nature communications

Status: data only, 1 dataset cited

[14138] doi:10.1038/s41467-025-62812-9 [paper, repository]

Mapping the coupling between tract reachability and cortical geometry of the human brain.

Journal: Nature communications

Authors' code: thomasyeolab/cbig (MIT), Washington-University/HCPpipelines (BSD-2-Clause), FANLabCASIA/D_TGC_tract-geometry-coupling (no license)

Status: code verified, 2,485 files readable, 11 matches

[14139] doi:10.1038/s41531-025-01085-x [paper, repository]

Glutamatergic synaptic resilience to overexpressed human alpha-synuclein.

Journal: NPJ Parkinson's disease

Authors' code: AbedChouaib/Synapse-Count (no license)

Status: empty repository, 1 file readable

[14140] doi:10.1038/s41593-025-02023-z [paper, repository]

Impaired capillary-venous drainage contributes to gliosis and demyelination in mouse white matter during aging.

Journal: Nature neuroscience

Authors' code: Franculino/vgm (GPL-3.0)

Status: code verified, 50 files readable, 8 matches

[14141] doi:10.1038/s41598-025-14735-0 [paper, repository]

Morphological profiling reveals neuroprotection via mitochondrial uncoupling in human dopaminergic neurons.

Journal: Scientific reports

Authors' code: Ksilink/PhenoLink (LGPL-2.1), pubchem.ncbi.nlm.nih.gov/score_matrix/score_matrix.cgi (no license), ksilink/notebooks (no license)

Status: code verified, 235 files readable, 8 matches

[14142] doi:10.1038/s41598-025-14774-7 [paper, data]

Task-based functional connectivity in infants after exposure to regular white noise during natural sleep measured by fNIRS.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14143] doi:10.1038/s41746-025-01912-8 [paper, repository]

Predicting antidepressant response via local-global graph neural network and neuroimaging biomarkers.

Journal: NPJ digital medicine

Authors' code: ATP-BME/LGCIF-GNN (no license)

Status: code verified, 27 files readable, 4 matches

[14144] doi:10.1038/s42003-025-08544-4 [paper, repository]

LRRK2-mutant microglia and neuromelanin synergize to drive dopaminergic neurodegeneration in an iPSC-based Parkinson's disease model.

Journal: Communications biology

Authors' code: Zenodo 16601152 (CC-BY-4.0)

Status: code verified

[14145] doi:10.1038/s42003-025-08554-2 [paper, repository]

Cross-sectional and longitudinal changes in category selectivity in visual cortex following pediatric cortical resection.

Journal: Communications biology

Authors' code: tinaliutong/VOTC-plasticity (no license)

Status: code verified, 6 files readable, 2 matches

[14146] doi:10.1038/s42003-025-08638-z [paper, data]

Dopaminergic modulation of behavioral and electrocortical markers of interpersonal performance monitoring in Parkinson's Disease.

Journal: Communications biology

Status: code on request, 1 dataset cited

[14147] doi:10.1038/s42003-025-08666-9 [paper, repository]

Detection of EEG dynamic complex patterns in disorders of consciousness.

Journal: Communications biology

Authors' code: dellabellagabriel/doc-brain-states (no license)

Status: code verified, 24 files readable, 2 matches

[14148] doi:10.1073/pnas.2425081122 [paper, repository]

Dural ectopic lymphatic structures accumulate during aging and exhibit dysregulation in neurodegenerative diseases.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 15453928 (artistic-license-2.0), the-okun-lab/meninges (Artistic-2.0)

Status: code verified, 14 files readable, 1 match

[14149] doi:10.1073/pnas.2512322122 [paper, data]

Maintenance suppression enhances subsequent associative learning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[14150] doi:10.1162/imag.a.107 [paper, repository]

Functional connectivity heterogeneity and consequences for clinical and cognitive prediction: Stage 2 registered report.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF kdx65 (no license), abcd-study/nda-abcd-collection-3165 (BSD-3-Clause)

Status: code verified, 2 files readable

[14151] doi:10.1162/imag.a.109 [paper, repository]

Resting-state functional connectivity of the marmoset claustrum.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: marmosetbrainconnectome.org (no license), OSF mga2v (no license)

Status: code verified

[14152] doi:10.1186/s13195-025-01832-5 [paper]

White matter hyperintensities and their impact in brain structure and function in alzheimer's disease and behavioral variant frontotemporal dementia across Latin America and the United States: a cross-sectional study.

Journal: Alzheimer's research & therapy

Status: code on request

[14153] doi:10.1186/s13578-025-01458-y [paper, repository]

Lysophosphatidic acid selectively modulates excitatory transmission in hippocampal neurons.

Journal: Cell & bioscience

Authors' code: konstantinstadler/brandt_lpa_neuronal_modulation (MIT)

Status: code verified, 4 files readable

[14154] doi:10.1242/jeb.250716 [paper, repository]

Prenatal conditions do not affect brain physiology and learning in a lizard.

Journal: The Journal of experimental biology

Authors' code: Pablo-Recio/CORT-Temp_Spatial_learning (no license)

Status: code verified, 5 files readable, 11 matches

[14155] doi:10.1371/journal.pcbi.1013396 [paper, repository]

Near-random connections support top-down feature-based attentional modulations in early sensory cortex.

Journal: PLoS computational biology

Authors' code: suny-park/SNN (no license)

Status: code verified, 8 files readable, 10 matches

[14156] doi:10.1371/journal.pone.0327118 [paper, repository]

Network biomarkers of Alzheimer's disease risk derived from joint volume and texture covariance patterns in mouse models.

Journal: PloS one

Authors' code: neurodata/alzheimers-mouse (other), Zenodo 10652239 (CC-BY-4.0)

Status: code verified, 24 files readable, 5 matches

[14157] doi:10.3389/fneur.2025.1630838 [paper, data]

X-FASNet: cross-scale feature-aware with self-attention network for cognitive decline assessment in Alzheimer's disease.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[14158] doi:10.3390/diagnostics15162014 [paper, repository]

Hybrid of VGG-16 and FTVT-b16 Models to Enhance Brain Tumors Classification Using MRI Images.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: mahmoudnasseraboali/VGG16-FTVTB16-for-brain-tumor-classifcation (no license)

Status: empty repository, 1 file readable

[14159] doi:10.3390/ijms26167783 [paper]

CO and NO Coordinate Developmental Neuron Migration.

Journal: International journal of molecular sciences

Status: code on request

[14160] doi:10.3390/s25164989 [paper, data]

Integrating Cortical Source Reconstruction and Adversarial Learning for EEG Classification.

Journal: Sensors (Basel, Switzerland)

Status: code on request, 1 dataset cited

[14161] doi:10.3758/s13423-025-02758-7 [paper, repository]

Breaking down prefixed words is unaffected by morphological boundary opacity: Evidence from behavioral and MEG experiments.

Journal: Psychonomic bulletin & review

Authors' code: OSF zgbrv (no license)

Status: code verified, 3 files readable, 7 matches

[14162] doi:10.7554/elife.102515 [paper, repository]

An increase in reactive oxygen species underlies neonatal cerebellum repair.

Journal: eLife

Authors' code: BayinLab/Pakula_et_al_23 (MIT), bayinlab/pakula_et_al_24 (MIT)

Status: code verified, 12 files readable, 8 matches

[14163] doi:10.7554/elife.104779 [paper, data]

A tight relationship between BOLD fMRI activation/deactivation and increase/decrease in single neuron responses in human association cortex.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 11 August 2025 (31 papers)

[14164] doi:10.1002/advs.202503606 [paper, repository]

Enhanced Brain-Heart Connectivity as a Precursor of Reduced State Anxiety after Therapeutic Virtual Reality Immersion.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: idilsezer/brain-heart_state-anxiety-biomarkers (no license)

Status: code verified, 4 files readable, 2 matches

[14165] doi:10.1002/advs.202507629 [paper, repository]

Integration of Genetic and Imaging Data for Alzheimer's Disease Diagnosis and Interpretation.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: QSong-github/AlzCLIP (no license)

Status: code verified, 7 files readable, 3 matches

[14166] doi:10.1016/j.bpsgos.2025.100589 [paper, repository]

Functional Coupling and Longitudinal Outcome Prediction in First-Episode Psychosis.

Journal: Biological psychiatry global open science

Authors' code: izachp/psychosis-FC-prediction (Apache-2.0)

Status: code verified, 18 files readable, 8 matches

[14167] doi:10.1016/j.cell.2025.07.024 [paper, data]

Molecular and neural control of social hierarchy by a forebrain-thalamocortical circuit.

Journal: Cell

Status: data only, 1 dataset cited

[14168] doi:10.1016/j.crmeth.2025.101138 [paper, repository]

All-in-one medical image-to-image translation.

Journal: Cell reports methods

Authors' code: fiy2W/eva_i2i (MIT), Zenodo 15815446 (CC-BY-4.0), richzhang/PerceptualSimilarity (BSD-2-Clause)

Status: code verified, 67 files readable, 10 matches

[14169] doi:10.1016/j.isci.2025.113332 [paper]

Single-cell transcriptomics of neuroinflammation and cerebrovascular endothelial cells in the aged rat hippocampus.

Journal: iScience

Status: code on request

[14170] doi:10.1016/j.isci.2025.113334 [paper, data]

Human cerebral organoids model tumor initiation and infiltration in an autologous astrocyte-supported setting.

Journal: iScience

Status: data only, 2 datasets cited

[14171] doi:10.1037/pag0000926 [paper, repository]

Continuous updating via self-motion compensates for weak allocentric spatial memory in aging.

Journal: Psychology and aging

Authors' code: Lenakeiz/QueenSquareVRAnalysis (no license)

Status: code verified, 20 files readable, 4 matches

[14172] doi:10.1038/s41467-025-62190-2 [paper, repository]

Mechanisms and interventions promoting healthy frontostriatal dynamics in obsessive-compulsive disorder.

Journal: Nature communications

Authors' code: sebnaze/OCD-Modeling (MIT), ocd-modeling.readthedocs.io (no license), codeocean:3954416 (no license)

Status: code verified, 45 files readable, 13 matches

[14173] doi:10.1038/s41467-025-62553-9 [paper, repository]

Theta-phase locking of single neurons during human spatial memory.

Journal: Nature communications

Authors' code: BonnSpatialMemoryLab/GuthPhaseLocking2025 (GPL-3.0), Zenodo 16737129 (GPL-3.0)

Status: code verified, 112 files readable, 26 matches

[14174] doi:10.1038/s41467-025-62590-4 [paper, repository]

AI-driven fusion of multimodal data for Alzheimer's disease biomarker assessment.

Journal: Nature communications

Authors' code: vkola-lab/ncomms2025 (AGPL-3.0)

Status: code verified, 115 files readable, 22 matches

[14175] doi:10.1038/s41467-025-62732-8 [paper]

Gamma-band synchronization between neurons in the visual cortex is causal for effective information processing and behavior.

Journal: Nature communications

Status: code on request

[14176] doi:10.1038/s41592-025-02774-4 [paper, repository]

Co-profiling of in situ RNA-protein interactions and transcriptome in single cells and tissues.

Journal: Nature methods

Authors' code: WangLabPKU/MAPIT-seq (GPL-3.0)

Status: code verified, 13 files readable, 10 matches

[14177] doi:10.1038/s41593-025-02013-1 [paper, repository]

Layer-specific changes in sensory cortex across the lifespan in mice and humans.

Journal: Nature neuroscience

Authors' code: acostaj/QSMbox (BSD-3-Clause), JosePMarques/MP2RAGE-related-scripts (GPL-3.0), pengliu1120/bayesian-prf-modelling (no license), lipsia-fmri/lipsia (Apache-2.0), samsrf/samsrf (BSD-3-Clause), PengLiu1120/cortical_layer_7T (no license)

Status: code verified, 888 files readable, 29 matches

[14178] doi:10.1038/s41598-025-12518-1 [paper, repository]

Oral respiration modulates sensory and cognitive brain potentials differently than nasal respiration.

Journal: Scientific reports

Authors' code: Zenodo 14499167 (MIT), Zenodo 14446172 (MIT), vivile42/oral_24 (MIT)

Status: code verified, 90 files readable, 3 matches

[14179] doi:10.1038/s41598-025-14053-5 [paper, repository]

infomeasure: a comprehensive Python package for information theory measures and estimators.

Journal: Scientific reports

Authors' code: pwollstadt/IDTxl (GPL-3.0), robertfeldt/InfoTheory.jl (MIT), nikdon/pyEntropy (Apache-2.0), cbueth/infomeasure (AGPL-3.0), infomeasure.readthedocs.io (no license), Zenodo 15792893 (agpl-3.0-or-later)

Status: code verified, 512 files readable, 11 matches

[14180] doi:10.1038/s41598-025-14693-7 [paper, repository]

RpiBeh offers a versatile open source solution for rodent behavior tracking and closed loop interventions.

Journal: Scientific reports

Authors' code: NiLab-FDU/RpiBeh (GPL-3.0)

Status: code verified, 29 files readable

[14181] doi:10.1038/s41598-025-14901-4 [paper, data]

Enhanced MRI brain tumor detection using deep learning in conjunction with explainable AI SHAP based diverse and multi feature analysis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14182] doi:10.1038/s44318-025-00514-0 [paper, data]

Tau uptake by human neurons depends on receptor LRP1 and kinase LRRK2.

Journal: The EMBO journal

Status: data only, 2 datasets cited

[14183] doi:10.1073/pnas.2421528122 [paper, repository]

Familial transmission of neural representations for mental arithmetic across two generations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 15098113 (CC-BY-4.0)

Status: code verified, 3 files readable

[14184] doi:10.1073/pnas.2510548122 [paper, data]

<i>Sox11</i> genes affect neuronal differentiation in the developing zebrafish enteric nervous system.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[14185] doi:10.1186/s12915-025-02357-x [paper, repository]

Elevated EGR1 binding at enhancers in excitatory neurons correlates with neuronal subtype-specific epigenetic regulation.

Journal: BMC biology

Authors' code: Zenodo 15876680 (CC-BY-4.0)

Status: code verified

[14186] doi:10.1186/s13293-025-00739-y [paper, repository]

Sex-based associations between neighborhood disadvantage and brain-gut alterations in individuals with irritable bowel syndrome.

Journal: Biology of sex differences

Authors' code: rotman-baycrest.on.ca/pls (no license)

Status: code verified

[14187] doi:10.1186/s13293-025-00744-1 [paper, data]

Sex-dependent epigenetic disruption of YY1 binding by prenatal BPA exposure downregulates Matr3 and alters Agap1 splicing in the offspring hippocampus.

Journal: Biology of sex differences

Status: data only, 3 datasets cited

[14188] doi:10.1242/bio.062128 [paper, data]

Mechanosensitive localization of Diversin highlights its function in vertebrate morphogenesis and planar cell polarity.

Journal: Biology open

Status: data only, 1 dataset cited

[14189] doi:10.1371/journal.pcbi.1013270 [paper, repository]

Barking up the right tree: Immune checkpoint signatures of human and dog cancers.

Journal: PLoS computational biology

Authors' code: MikolajKocikowski/BarkingUpTree-ploscb (MIT)

Status: code verified, 3 files readable, 12 matches

[14190] doi:10.1371/journal.pcbi.1013294 [paper, repository]

A hierarchical multiscale model of forward and backward alpha-band traveling waves in the visual system.

Journal: PLoS computational biology

Authors' code: jcbschwenk/multiscale-tw-model (no license)

Status: code verified, 43 files readable, 11 matches

[14191] doi:10.3389/fnhum.2025.1632844 [paper, repository]

Similar does not mean the same: ERP correlates of mental and physical experiencer verb processing in Malayalam complex constructions.

Journal: Frontiers in human neuroscience

Authors' code: Zenodo 15478572 (CC-BY-4.0)

Status: code verified, 8 files readable, 7 matches

[14192] doi:10.3390/brainsci15080854 [paper, data]

Automated Sleep Stage Classification Using PSO-Optimized LSTM on CAP EEG Sequences.

Journal: Brain sciences

Status: data only, 1 dataset cited

[14193] doi:10.3390/s25164962 [paper, data]

EEG-Based Authentication Across Various Event-Related Potentials (ERPs).

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[14194] doi:10.7150/thno.119712 [paper, data]

Targeting CB1R Rewires Ca²⁺-Dependent Mitophagy to Promote Nerve Regeneration.

Journal: Theranostics

Status: data only, 1 dataset cited

Sunday, 10 August 2025 (4 papers)

[14195] doi:10.1038/s41598-025-14476-0 [paper, data]

Improving early detection of Alzheimer's disease through MRI slice selection and deep learning techniques.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14196] doi:10.1038/s41598-025-15563-y [paper]

Harnessing electroacupuncture: a promising strategy against sleep deprivation-exacerbated post-cardiac arrest brain injury.

Journal: Scientific reports

Status: data only

[14197] doi:10.1177/13872877251365671 [paper, repository]

Commonalities in cortical neurodegeneration between type 2 diabetes and Alzheimer's disease.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: git.valeria.science/medics/useful-code (no license), git.valeria.science/medics/studies (no license)

Status: code verified

[14198] doi:10.3390/s25164946 [paper, data]

Brain-Computer Interface for EEG-Based Authentication: Advancements and Practical Implications.

Journal: Sensors (Basel, Switzerland)

Status: data only, 4 datasets cited

Saturday, 9 August 2025 (8 papers)

[14199] doi:10.1016/j.isci.2025.113335 [paper, data]

An evolutionarily conserved role for CTNNB1/β-CATENIN in regulating the development of the corpus callosum.

Journal: iScience

Status: code on request, 1 dataset cited

[14200] doi:10.1016/j.isci.2025.113338 [paper, data]

Functional variants of CFAP410 affect the DNA damage response leading to motor neuron degeneration - Implications for ALS.

Journal: iScience

Status: code on request, 1 dataset cited

[14201] doi:10.1016/j.xpro.2025.104019 [paper]

Protocol for recording and analyzing neuronal network activity ex vivo with multi-electrode arrays in mouse brain tissue.

Journal: STAR protocols

Status: code on request

[14202] doi:10.1038/s41598-025-14471-5 [paper, data]

Artificial intelligence with feature fusion empowered enhanced brain stroke detection and classification for disabled persons using biomedical images.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14203] doi:10.1038/s42003-025-08602-x [paper, repository]

Resynchronization of microglial activity in the brain is associated with restoration of motor function in Parkinson's disease.

Journal: Communications biology

Authors' code: pmod.com (no license), carimas.fi (no license)

Status: code verified

[14204] doi:10.1038/s43856-025-01085-1 [paper, repository]

Neurobehavioral mechanisms of fear and anxiety in multiple sclerosis.

Journal: Communications medicine

Authors' code: Zenodo 16218570 (CC-BY-4.0), Zenodo 16218569 (CC-BY-4.0)

Status: code verified, 36 files readable, 4 matches

[14205] doi:10.1093/braincomms/fcaf291 [paper, repository]

Altered putamen connectivity in patients with neurological post-COVID condition.

Journal: Brain communications

Authors' code: larsschlenker/tractography_pipeline (no license)

Status: code verified, 2 files readable

[14206] doi:10.3390/cancers17162614 [paper, repository]

Explainable Machine Learning Models for Glioma Subtype Classification and Survival Prediction.

Journal: Cancers

Authors' code: VershininaOlga/XAI-glioma-diagnostics (no license)

Status: dead link

Friday, 8 August 2025 (36 papers)

[14207] doi:10.1002/acn3.70164 [paper, repository]

ICU-EEG Pattern Detection by a Convolutional Neural Network.

Journal: Annals of clinical and translational neurology

Authors' code: kaggle.com/competitions/hms-harmful-brain-activity-classification (no license)

Status: dead link

[14208] doi:10.1002/path.6457 [paper, repository]

Spatial transcriptomics exploration of the primary neuroblastoma microenvironment in archived FFPE samples unveils novel paracrine interactions.

Journal: The Journal of pathology

Authors' code: CCGGlab/ST_NB (no license)

Status: code verified, 29 files readable, 21 matches

[14209] doi:10.1007/s00247-025-06347-7 [paper, repository]

Biometry and volumetry in multi-centric fetal brain magnetic resonance imaging: assessing the bias of super-resolution reconstruction.

Journal: Pediatric radiology

Authors' code: Zenodo 7612119 (BSD-3-Clause), medical-image-analysis-laboratory/mialsuperresolutiontoolkit (BSD-3-Clause)

Status: code verified, 378 files readable, 2 matches

[14210] doi:10.1038/s41380-025-03131-9 [paper, repository]

Interpeduncular GABAergic neuron function controls threat processing and innate defensive adaptive learning.

Journal: Molecular psychiatry

Authors' code: MolasLAB (no license)

Status: code verified

[14211] doi:10.1038/s41380-025-03142-6 [paper, repository]

Brain structure characteristics in children with attention-deficit/hyperactivity disorder elucidated using traveling-subject harmonization.

Journal: Molecular psychiatry

Authors' code: OSF 6ay5q (no license)

Status: code verified, 12 files readable, 2 matches

[14212] doi:10.1038/s41467-025-61319-7 [paper, repository]

Glial reactivity and cognitive decline follow chronic heterochromatin loss in neurons.

Journal: Nature communications

Authors' code: ChariteExpMri/antx2 (LGPL-2.1), qoldt/HP1-Deficiency-Neurodegeneration (GPL-3.0)

Status: code verified, 2,007 files readable, 5 matches

[14213] doi:10.1038/s41467-025-61841-8 [paper, data]

Regional heterogeneity of the blood-brain barrier.

Journal: Nature communications

Status: data only, 2 datasets cited

[14214] doi:10.1038/s41467-025-62155-5 [paper, repository]

Large-scale multi-site study shows no association between musical training and early auditory neural sound encoding.

Journal: Nature communications

Authors' code: OSF duq34 (no license), kellywhiteford/Musicianship (MIT), kellywhiteford/MusicianshipEEG (MIT), Zenodo 15707010 (MIT), Zenodo 15707281 (MIT)

Status: code verified, 274 files readable, 30 matches

[14215] doi:10.1038/s41467-025-62736-4 [paper, repository]

Pupil size modulation drives retinal activity in mice and shapes human perception.

Journal: Nature communications

Authors' code: Zenodo 15709769 (CC-BY-4.0), tjasalapanja/PLR_RGC_analysis (no license)

Status: code verified, 778 files readable, 1 match

[14216] doi:10.1038/s41467-025-62757-z [paper, data]

Lipid-mediated gating of a miniature mechanosensitive MscS channel from Trypanosoma cruzi.

Journal: Nature communications

Status: data only, 9 datasets cited

[14217] doi:10.1038/s41531-025-01092-y [paper, repository]

Online prediction of optimal deep brain stimulation contacts from local field potentials in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: OSF fzn8d (no license)

Status: code verified, 10 files readable, 4 matches

[14218] doi:10.1038/s41536-025-00424-z [paper, data]

Supramolecular nanostructure mimics GDNF trophic effects in vitro on human dopaminergic neurons.

Journal: NPJ Regenerative medicine

Status: data only, 1 dataset cited

[14219] doi:10.1038/s41597-025-05543-2 [paper, repository]

MRS-BIDS, an extension to the Brain Imaging Data Structure for magnetic resonance spectroscopy.

Journal: Scientific data

Authors' code: wtclarke/spec2nii (BSD-3-Clause)

Status: code verified, 60 files readable, 7 matches

[14220] doi:10.1038/s41597-025-05691-5 [paper, data]

Audiovisual virtual reality for emotion induction: a dataset of physiological responses.

Journal: Scientific data

Status: data only, 1 dataset cited

[14221] doi:10.1038/s41598-025-13185-y [paper, data]

Early changes in corticospinal excitability for subliminally presented fearful body postures.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14222] doi:10.1038/s41598-025-14917-w [paper, data]

Advanced dynamic ensemble framework with explainability driven insights for precision brain tumor classification across datasets.

Journal: Scientific reports

Status: data only, 3 datasets cited

[14223] doi:10.1038/s41746-025-01908-4 [paper, data]

Ethical gaps in closed-loop neurotechnology: a scoping review.

Journal: NPJ digital medicine

Status: data only, 1 dataset cited

[14224] doi:10.1038/s42003-025-08532-8 [paper, data]

Regulation of cortical neurogenesis by MED13L via transcriptional priming and its implications for MED13L syndrome.

Journal: Communications biology

Status: data only, 1 dataset cited

[14225] doi:10.1038/s42003-025-08600-z [paper, repository]

Enhancing visual perception by modulating prestimulus alpha and beta power with tRNS.

Journal: Communications biology

Authors' code: OSF 4ynt3 (no license)

Status: code verified, 7 files readable, 5 matches

[14226] doi:10.1073/pnas.2506530122 [paper, repository]

Neural and computational evidence for a predictive learning account of the testing effect.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF utyh4 (no license)

Status: code verified, 28 files readable, 1 match

[14227] doi:10.1093/braincomms/fcaf290 [paper, data]

Structural and functional connectivity of vestibular graviceptive to sensory and motor circuits.

Journal: Brain communications

Status: data only, 1 dataset cited

[14228] doi:10.1126/sciadv.adp0783 [paper, repository]

Isoform-level profiling of m<sup>6</sup>A epitranscriptomic signatures in human brain.

Journal: Science advances

Authors' code: Zenodo 14219741 (CC-BY-4.0), josiegleeson/annotate-m6anet-output (no license), Zenodo 14219743 (CC-BY-4.0), josiegleeson/compare-modification-rates-at-shared-sites (no license)

Status: code verified, 6 files readable, 1 match

[14229] doi:10.1126/sciadv.ads1807 [paper, data]

Positive-going hybrid indicators for voltage imaging in excitable cells and tissues.

Journal: Science advances

Status: data only, 1 dataset cited

[14230] doi:10.1126/sciadv.adv3316 [paper, repository]

Multiscale mathematical model-informed reinforcement learning optimizes combination treatment scheduling in glioblastoma evolution.

Journal: Science advances

Authors' code: Zenodo 15289783 (CC-BY-4.0), SunXQlab/M4RL (no license), Zenodo 22040374 (MIT)

Status: code verified, 79 files readable, 16 matches

[14231] doi:10.1162/imag.a.103 [paper]

The dependence of CO<sub>2</sub> cerebrovascular reactivity (CVR) on caffeine.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[14232] doi:10.1162/imag.a.106 [paper, repository]

Precise MRI-histology coregistration of paraffin-embedded tissue with blockface imaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: code.stanford.edu/zeinehlab/bbq.git (no license)

Status: code verified

[14233] doi:10.1186/s41065-025-00525-1 [paper, data]

Screening, identification, and experimental validation of SUMOylation biomarkers in Parkinson's disease.

Journal: Hereditas

Status: data only, 1 dataset cited

[14234] doi:10.1242/jcs.263908 [paper, repository]

TMEM184B modulates endolysosomal acidification via the vesicular proton pump.

Journal: Journal of cell science

Authors' code: eriklarsen4/Endo (no license)

Status: code verified, 8 files readable, 2 matches

[14235] doi:10.1371/journal.pone.0327386 [paper, data]

In Silico identification and modelling of FDA-approved drugs targeting T-type calcium channels.

Journal: PloS one

Status: data only, 1 dataset cited

[14236] doi:10.1371/journal.pone.0328682 [paper, data]

Bioinformatics analysis to explore biomarkers and mechanisms of action associated with endoplasmic reticulum stress and ferroptosis in Parkinson's disease.

Journal: PloS one

Status: data only, 1 dataset cited

[14237] doi:10.1371/journal.pone.0329823 [paper, data]

Expression of human A53T alpha-synuclein without endogenous rat alpha-synuclein fails to elicit Parkinson's disease-related phenotypes in a novel humanized rat model.

Journal: PloS one

Status: data only, 1 dataset cited

[14238] doi:10.3389/fnins.2025.1602116 [paper, data]

The organization of serotonergic fibers in the Pacific angelshark brain: neuroanatomical and supercomputing analyses.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[14239] doi:10.3389/fphar.2025.1662336 [paper, repository]

<i>Cistanche tubulosa</i> glycosides ameliorate cognitive decline in APP/PS1 mice via modulation of gut microbiota and fatty acid metabolism: insights from multi-omics and experimental validation.

Journal: Frontiers in pharmacology

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[14240] doi:10.3390/biomedicines13081943 [paper, data]

Red Nucleus Excitatory Neurons Initiate Directional Motor Movement in Mice.

Journal: Biomedicines

Status: data only, 1 dataset cited

[14241] doi:10.3390/cimb47080636 [paper, data]

Convergent and Divergent Mitochondrial Pathways as Causal Drivers and Therapeutic Targets in Neurological Disorders.

Journal: Current issues in molecular biology

Status: data only, 1 dataset cited

[14242] doi:10.3390/ijms26167698 [paper, data]

Comparative Pain Expression and Its Association to Intestinal Microbiota Through the MI-RAT© Osteoarthritis Model Induced in LOU/C/Jall and Sprague-Dawley Aged Rats.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Thursday, 7 August 2025 (45 papers)

[14243] doi:10.1002/ame2.70073 [paper, data]

Insight into pericytes in glioblastoma angiogenesis: In vivo tracking by two-photon microscopy and proteomic profiling.

Journal: Animal models and experimental medicine

Status: data only, 1 dataset cited

[14244] doi:10.1002/mds.30325 [paper, repository]

Impaired Glymphatic Clearance, Measured Using Diffusion Tensor Image Analysis Along the Perivascular Space (DTI-ALPS), is Linked to Poor Cognitive Outcomes in Parkinson's Disease.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: AngelikaZa/AngelikaZa-DTIALPSinPDcognitiveImpairment (no license)

Status: dead link

[14245] doi:10.1016/j.celrep.2025.116099 [paper, repository]

NRCAM variant defined by microexon skipping is a targetable cell surface proteoform in high-grade gliomas.

Journal: Cell reports

Authors' code: ans4013/ScisorWiz (no license)

Status: code verified, 14 files readable

[14246] doi:10.1016/j.dcn.2025.101601 [paper, data]

Electrophysiological decoding captures the temporal trajectory of face categorization in infants.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[14247] doi:10.1016/j.isci.2025.113316 [paper]

Contribution of glial inwardly rectifying potassium (Kir) channels to potassium buffering in insect neural systems.

Journal: iScience

Status: code on request

[14248] doi:10.1016/j.stemcr.2025.102598 [paper]

PML is crucial for neural stem cell differentiation, stress tolerance and mitochondrial integrity.

Journal: Stem cell reports

Status: code on request

[14249] doi:10.1038/s41377-025-01895-x [paper, repository]

Multi-photon, label-free photoacoustic and optical imaging of NADH in brain cells.

Journal: Light, science & applications

Authors' code: surlab/lf-mp-photoacoustic-imaging (MIT)

Status: code verified, 234 files readable, 1 match

[14250] doi:10.1038/s41380-025-03134-6 [paper, repository]

Computational mechanisms of neuroimaging biomarkers uncovered by multicenter resting-state fMRI connectivity variation profile.

Journal: Molecular psychiatry

Authors' code: RIKEN-AIP-CBDteam/Yamashita2025MP (MIT)

Status: code verified, 164 files readable, 5 matches

[14251] doi:10.1038/s41467-025-62151-9 [paper, repository]

Artificial transneurons emulate neuronal activity in different areas of brain cortex.

Journal: Nature communications

Authors' code: Zenodo 15497230 (CC-BY-4.0)

Status: empty repository

[14252] doi:10.1038/s41537-025-00658-2 [paper]

A frame network study of first-episode schizophrenia, ultra-high risk, and healthy populations.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[14253] doi:10.1038/s41598-025-13115-y [paper, data]

Sparse transformer and multipath decision tree: a novel approach for efficient brain tumor classification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14254] doi:10.1038/s41598-025-13610-2 [paper, repository]

Complementary MR measures of white matter and their relation to cardiovascular health and cognition.

Journal: Scientific reports

Authors' code: OSF y7ct8 (no license)

Status: code verified, 1 file readable, 1 match

[14255] doi:10.1038/s41598-025-14225-3 [paper, data]

Screening and identification of muscle pericyte selective markers.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14256] doi:10.1038/s41746-025-01861-2 [paper]

Novel radiotherapy target definition using AI-driven predictions of glioblastoma recurrence from metabolic and diffusion MRI.

Journal: NPJ digital medicine

Status: code on request

[14257] doi:10.1038/s42003-025-08536-4 [paper, repository]

Notched noise reveals differential improvement in the neural representation of the sound envelope.

Journal: Communications biology

Authors' code: ece.mcmaster.ca/~ibruce/zbcanmodel (no license), Zenodo 10370063 (lgpl-3.0-or-later), Zenodo 10370064 (lgpl-3.0-or-later)

Status: code verified, 42 files readable, 3 matches

[14258] doi:10.1038/s42003-025-08543-5 [paper, repository]

Disentangling large-scale brain dynamics and their links to behavior during the emotional face matching task.

Journal: Communications biology

Authors' code: rubykong/cbig_network_correspondence (MIT), connectomicslab/hcp-behavioral-domains (MIT), shap.readthedocs.io (no license), scikit-learn.org/stable/modules (no license)

Status: code verified, 25 files readable

[14259] doi:10.1038/s42003-025-08578-8 [paper, data]

Machine learning-based proteomics profiling of ALS identifies downregulation of RPS29 that maintains protein homeostasis and STMN2 level.

Journal: Communications biology

Status: code on request, 1 dataset cited

[14260] doi:10.1038/s42256-025-01072-0 [paper, repository]

High-level visual representations in the human brain are aligned with large language models.

Journal: Nature machine intelligence

Authors' code: StanfordVL/taskonomy (MIT), adriendoerig/visuo_llm (MIT), Zenodo 15282176 (MIT)

Status: code verified, 369 files readable, 18 matches

[14261] doi:10.1080/17590914.2025.2542998 [paper]

Dysregulated Expression of Inflammasome and Extracellular Matrix Genes in <i>C9orf72</i>-ALS/FTD Microglia.

Journal: ASN neuro

Status: data only

[14262] doi:10.1080/21505594.2025.2543064 [paper, data]

Riboflavin inhibits growth and reduces virulence of <i>Cryptococcus neoformans in vitro</i> by membrane disruption and excessive accumulation of reactive oxygen species and exhibits efficacy against pulmonary cryptococcosis and meningitis.

Journal: Virulence

Status: data only, 2 datasets cited

[14263] doi:10.1088/1741-2552/adf50e [paper, repository]

Implications of shared motor and perceptual activations on the sensorimotor cortex for neuroprosthetic decoding.

Journal: Journal of neural engineering

Authors' code: ChangLabUcsf/SilvaLiu2025_Distractors (BSD-3-Clause)

Status: code verified, 12 files readable, 1 match

[14264] doi:10.1093/biomethods/bpaf051 [paper, repository]

An explainable AI approach for mapping multivariate regional brain age and clinical severity patterns in Alzheimer's disease.

Journal: Biology methods & protocols

Authors' code: ganchand/AgeNet-SHAP (no license), ganchand/AJP_Codes (no license), CBICA/MUSE (other)

Status: code verified, 40 files readable, 7 matches

[14265] doi:10.1111/acer.70132 [paper, repository]

A model of ethanol self-administration in head-fixed mice.

Journal: Alcohol, clinical & experimental research

Authors' code: Otis-Lab-MUSC/REACHER (Unlicense)

Status: code verified, 145 files readable

[14266] doi:10.1162/imag.a.100 [paper, data]

Motivational control of habits: A preregistered fMRI study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 2 datasets cited

[14267] doi:10.1162/imag.a.102 [paper, repository]

The reliability of bilateral cerebral laterality for word generation: Who is left in the middle?

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 2jazv (no license)

Status: code verified, 7 files readable, 11 matches

[14268] doi:10.1162/imag.a.97 [paper, repository]

The efficacy of resting-state fMRI denoising pipelines for motion correction and behavioural prediction.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: kanepav0002/rsfmri_prediction (no license)

Status: code verified, 2,000 files readable

[14269] doi:10.1162/imag.a.99 [paper, repository]

The physiological component of the BOLD signal: Impact of age and heart rate variability biofeedback training.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: richardwsong/physio-bold-aging (MIT)

Status: code verified, 18 files readable, 14 matches

[14270] doi:10.1177/10870547251356744 [paper, repository]

Mechanisms of Learning in Adults With ADHD During an Ecologically-Valid Visual Discrimination Task.

Journal: Journal of attention disorders

Authors' code: version.helsinki.fi/hipercog/adhd (no license)

Status: code verified

[14271] doi:10.1186/s13020-025-01180-4 [paper, data]

Huanglian Jiedu Decoction improves the"central-peripheral"inflammatory microenvironment and enhances the cognitive function of APP/PS1 mice by inhibiting the activation of NLRP3 inflammasome mediated by gut microbiota.

Journal: Chinese medicine

Status: data only, 1 dataset cited

[14272] doi:10.1186/s13023-025-03900-3 [paper, data]

Establishing a core outcome set for creatine transporter deficiency and guanidinoacetate methyltransferase deficiency.

Journal: Orphanet journal of rare diseases

Status: data only, 1 dataset cited

[14273] doi:10.1186/s13195-025-01815-6 [paper, data]

Machine learning applications in vascular neuroimaging for the diagnosis and prognosis of cognitive impairment and dementia: a systematic review and meta-analysis.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[14274] doi:10.1186/s13195-025-01827-2 [paper, repository]

Longitudinal structural MRI-based deep learning and radiomics features for predicting Alzheimer's disease progression.

Journal: Alzheimer's research & therapy

Authors' code: MedAICodes/CNN-TLSTM (MIT)

Status: code verified, 11 files readable, 4 matches

[14275] doi:10.1186/s41016-025-00402-w [paper, repository]

Dynamic nomogram for predicting long-term survival in patients with brain abscess.

Journal: Chinese neurosurgical journal

Authors' code: thara7640/DynNom_BA (no license)

Status: code verified, 2 files readable

[14276] doi:10.1371/journal.pbio.3003041 [paper, data]

Encoding of visual stimuli and behavioral goals in distinct anatomical areas of monkey ventrolateral prefrontal cortex.

Journal: PLoS biology

Status: data only, 1 dataset cited

[14277] doi:10.1371/journal.pbio.3003281 [paper, repository]

Orbitofrontal cortex computes gaze-dependent comparisons between attributes rather than integrated values.

Journal: PLoS biology

Authors' code: doi:10.5061/dryad.f1vhhmh7t (no license)

Status: code verified

[14278] doi:10.1371/journal.pone.0327305 [paper, repository]

AI-Assisted identification of sex-specific patterns in diabetic retinopathy using retinal fundus images.

Journal: PloS one

Authors' code: Fundus-AI/DR_sex_difference (no license)

Status: code verified, 4 files readable, 1 match

[14279] doi:10.1371/journal.pone.0329788 [paper, repository]

Characterization of depth perception information inferred from neuronal activity in primary visual cortex.

Journal: PloS one

Authors' code: OSF ec4fd (no license)

Status: code verified, 3 files readable, 4 matches

[14280] doi:10.2196/69582 [paper, repository]

Effectiveness of 2 Just-in-Time Adaptive Interventions for Reducing Stress and Stabilizing Cardiac Autonomic Function: Microrandomized Trials.

Journal: Journal of medical Internet research

Authors' code: OSF 8nupa (no license), OSF qkep9 (no license)

Status: empty repository

[14281] doi:10.3340/jkns.2025.0061 [paper, data]

Association between Neutrophil-to-Albumin Ratio and 28-Day All-Cause Mortality in Patients with Traumatic Brain Injury : A Retrospective Analysis of the MIMIC-IV Database.

Journal: Journal of Korean Neurosurgical Society

Status: data only, 1 dataset cited

[14282] doi:10.3389/fimmu.2025.1610683 [paper, data]

Meta-analysis of multi-center transcriptomic profiles and machine learning reveal phospholipase Cβ4 as a Wnt/Ca²<sup>+</sup> signaling mediator in glioblastoma immunotherapy.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[14283] doi:10.3389/fmicb.2025.1645190 [paper, data]

Zhi-zi-chi decoction exerts hypnotic effect through gut-brain axis modulation in insomnia mice.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[14284] doi:10.3389/fninf.2025.1572782 [paper, repository]

Decoupling model descriptions from execution: a modular paradigm for extensible neurosimulation with EDEN.

Journal: Frontiers in neuroinformatics

Authors' code: eden-simulator.org/links/paper-backends-2025-material (no license)

Status: code verified

[14285] doi:10.3390/biomimetics10080516 [paper, repository]

NeuroQ: Quantum-Inspired Brain Emulation.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: colab.research.google.com/drive/1h1aslywmd_cnjd5daso3lw27_kvudj7y (no license)

Status: code verified

[14286] doi:10.3390/brainsci15080842 [paper, data]

Automated Detection of Epileptic Seizures in EEG Signals via Micro-Capsule Networks.

Journal: Brain sciences

Status: data only, 1 dataset cited

[14287] doi:10.3758/s13428-025-02747-7 [paper, repository]

Aligning syntactic structure to the dynamics of verbal communication: A pipeline for annotating syntactic phrases onto speech acoustics.

Journal: Behavior research methods

Authors' code: cosimo-iaia9305/align_syntax (no license)

Status: code verified, 4 files readable, 4 matches

Wednesday, 6 August 2025 (39 papers)

[14288] doi:10.1007/s00429-025-02995-5 [paper, data]

Neuron soma size and density measurements in rat striatal regions disaggregated by sex and estrous cycle phase.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[14289] doi:10.1007/s42113-025-00253-9 [paper, repository]

Time-Local Transformer.

Journal: Computational brain & behavior

Authors' code: cogneuroai/time-local-transformer (no license)

Status: code verified, 7 files readable, 3 matches

[14290] doi:10.1016/j.aggp.2025.100195 [paper]

Thyroid-stimulating hormone and cognitive impairment in non-depressed non-demented multiethnic middle-aged and older US adults: Assessing sex-specific risk prediction.

Journal: Archives of gerontology and geriatrics plus

Status: code on request

[14291] doi:10.1016/j.celrep.2025.116078 [paper, repository]

A cholinergic spinal pathway for the adaptive control of breathing.

Journal: Cell reports

Authors' code: Zenodo 15732816 (CC-BY-4.0), philippidou-lab/lin_calabrese_2025 (no license)

Status: code verified, 4 files readable

[14292] doi:10.1016/j.isci.2025.113296 [paper]

Energy-efficient human-like trajectory planning for wheeled robots in unstructured environments based on the RCSM-PL network.

Journal: iScience

Status: code on request

[14293] doi:10.1016/j.omtn.2025.102670 [paper, repository]

Context dependent role of miR-486 promoting neuroregeneration of primary sensory neurons downstream of interleukin-6 signal transducer.

Journal: Molecular therapy. Nucleic acids

Authors' code: ZiDa20/mir486_paper (no license)

Status: code verified, 2 files readable, 2 matches

[14294] doi:10.1016/j.smhs.2025.07.008 [paper]

Brain resting state functional connectivity changes with aerobic exercise, and mindfulness: A narrative review.

Journal: Sports medicine and health science

Status: code on request

[14295] doi:10.1016/j.xpro.2025.104016 [paper]

Protocol for the induction of human spinal motor neurons from human induced pluripotent stem cells for studying amyotrophic lateral sclerosis.

Journal: STAR protocols

Status: code on request

[14296] doi:10.1038/s41398-025-03489-y [paper, repository]

Dynamic neural network modulation associated with rumination in major depressive disorder: a prospective observational comparative analysis of cognitive behavioral therapy and pharmacotherapy.

Journal: Translational psychiatry

Authors' code: shina-k/Transl.-Psychiatry2025 (MIT)

Status: code verified, 5 files readable, 1 match

[14297] doi:10.1038/s41467-025-62317-5 [paper, repository]

Phase synchrony between prefrontal noradrenergic and cholinergic signals indexes inhibitory control.

Journal: Nature communications

Authors' code: buzsakilab/buzcode (GPL-3.0), machenslab/dPCA (MIT), figshare 29323508 (CC-BY-4.0)

Status: code verified, 2,022 files readable, 12 matches

[14298] doi:10.1038/s41467-025-62514-2 [paper, repository]

Plasmodium falciparum egress disrupts endothelial junctions and activates JAK-STAT signaling in a microvascular 3D blood-brain barrier model.

Journal: Nature communications

Authors' code: Alina-Ba/scRNAseq_iRBC (no license)

Status: code verified, 7 files readable, 13 matches

[14299] doi:10.1038/s41467-025-62528-w [paper, repository]

Cross-species comparison reveals therapeutic vulnerabilities halting glioblastoma progression.

Journal: Nature communications

Authors' code: leoforster/ptalign (no license), Zenodo 14968415 (CC-BY-4.0), Zenodo 17313069 (CC-BY-4.0), Zenodo 17313070 (CC-BY-4.0), Teichlab/G2G_notebooks (no license)

Status: code verified, 35 files readable, 9 matches

[14300] doi:10.1038/s41537-025-00654-6 [paper, data]

Temporal characteristics of hemodynamic responses during active and passive hand movements in schizophrenia spectrum disorder.

Journal: Schizophrenia (Heidelberg, Germany)

Status: data only, 1 dataset cited

[14301] doi:10.1038/s41586-025-09335-x [paper, data]

Lithium deficiency and the onset of Alzheimer's disease.

Journal: Nature

Status: code on request, 1 dataset cited

[14302] doi:10.1038/s41586-025-09339-7 [paper, data]

Structural basis of fast N-type inactivation in K<sub>v</sub> channels.

Journal: Nature

Status: data only, 1 dataset cited

[14303] doi:10.1038/s41586-025-09362-8 [paper, repository]

Microglia regulate GABAergic neurogenesis in prenatal human brain through IGF1.

Journal: Nature

Authors' code: DIANKUNYU/R-script-used-for-Yu-2025 (no license), codycollier/mglia-nat25 (MIT)

Status: code verified, 7 files readable, 7 matches

[14304] doi:10.1038/s41586-025-09477-y [paper, data]

Microglia-neuron crosstalk through Hex-GM2-MGL2 maintains brain homeostasis.

Journal: Nature

Status: data only, 1 dataset cited

[14305] doi:10.1038/s41593-025-02010-4 [paper, repository]

Hypoxia ameliorates neurodegeneration and movement disorder in a mouse model of Parkinson's disease.

Journal: Nature neuroscience

Authors' code: MoothaLab/2025_marutani_pd_mouse (MIT), MoothaLab/ercc1-mouse-rob (MIT)

Status: code verified, 17 files readable, 8 matches

[14306] doi:10.1038/s41598-025-11574-x [paper, data]

Pyramidal attention-based T network for brain tumor classification: a comprehensive analysis of transfer learning approaches for clinically reliable and reliable AI hybrid approaches.

Journal: Scientific reports

Status: data only, 3 datasets cited

[14307] doi:10.1038/s41598-025-12026-2 [paper, repository]

Statistical variability in comparing accuracy of neuroimaging based classification models via cross validation.

Journal: Scientific reports

Authors' code: BahramJafrasteh/classifier_test (GPL-3.0)

Status: code verified, 5 files readable, 4 matches

[14308] doi:10.1038/s41598-025-13646-4 [paper, repository]

Contrastive representation learning with transformers for robust auditory EEG decoding.

Journal: Scientific reports

Authors' code: exporl/auditory-eeg-dataset (no license), exporl/transformer-clip-eeg (no license)

Status: code verified, 25 files readable, 10 matches

[14309] doi:10.1038/s42003-025-08504-y [paper, repository]

Neural systems for processing social relationship information along two principal dimensions.

Journal: Communications biology

Authors' code: memcolab/Kang2025CommunBiol (BSD-3-Clause)

Status: code verified, 3 files readable, 3 matches

[14310] doi:10.1038/s44321-025-00287-3 [paper, repository]

A fetal oncogene NUAK2 is an emerging therapeutic target in glioblastoma.

Journal: EMBO molecular medicine

Authors' code: smglasgowlab/nuak2-2024 (no license)

Status: code verified, 7 files readable, 10 matches

[14311] doi:10.1111/epi.18556 [paper, data]

The gut microbiome associated with LGI1-antibody encephalitis.

Journal: Epilepsia

Status: data only, 1 dataset cited

[14312] doi:10.1126/sciadv.adv2657 [paper, data]

Acquisition of neural crest promoted thyroid evolution from chordate endostyle.

Journal: Science advances

Status: data only, 1 dataset cited

[14313] doi:10.1126/sciadv.adx1680 [paper, data]

Atomistic mechanism of noncanonical voltage gating in K<sub>2P</sub> channels.

Journal: Science advances

Status: data only, 1 dataset cited

[14314] doi:10.1186/s12915-025-02358-w [paper, data]

Metabolic landscape uncovers remodeling of T cell immunity affected by fatty acid desaturase in Parkinson's disease at single-cell resolution.

Journal: BMC biology

Status: data only, 2 datasets cited

[14315] doi:10.1186/s12967-025-06862-z [paper, data]

Multi-stream feature fusion of vision transformer and CNN for precise epileptic seizure detection from EEG signals.

Journal: Journal of translational medicine

Status: data only, 2 datasets cited

[14316] doi:10.1186/s13073-025-01513-w [paper, repository]

Contribution of rare coding variants to microcephaly in individuals with neurodevelopmental disorders.

Journal: Genome medicine

Authors' code: broadinstitute.github.io/warp (no license)

Status: code verified

[14317] doi:10.1371/journal.pcbi.1013306 [paper, repository]

Excitatory/inhibitory ratio disruption modulates neural synchrony and flow directions in a cortical microcircuit.

Journal: PLoS computational biology

Authors' code: figshare 28715867 (CC-BY-4.0)

Status: code verified, 44 files readable, 1 match

[14318] doi:10.1371/journal.pone.0327791 [paper, repository]

PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces.

Journal: PloS one

Authors' code: NeuroDiag/PyNoetic-official (GPL-3.0)

Status: code verified, 38 files readable, 8 matches

[14319] doi:10.1371/journal.pone.0327871 [paper, data]

HU to RGB transformation with automatic windows selection for intracranial hemorrhage classification using ncCT.

Journal: PloS one

Status: data only, 1 dataset cited

[14320] doi:10.1523/jneurosci.0181-25.2025 [paper, repository]

The Somatosensory Cortex and Body Representation: Updating the Motor System during a Visuoproprioceptive Cue Conflict.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF w5pfk (no license)

Status: code verified, 1 file readable

[14321] doi:10.1523/jneurosci.2059-24.2025 [paper, data]

Age-Related Increase in Locus Ceruleus Activity and Connectivity with the Prefrontal Cortex during Ambiguity Processing.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[14322] doi:10.1523/jneurosci.2405-24.2025 [paper]

Nicotine Withdrawal Drives Aversive Behaviors by Recruiting Inhibitory Interpeduncular Nucleus Inputs to the Laterodorsal Tegmentum in Mice.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: code on request

[14323] doi:10.3389/fnins.2025.1579329 [paper, data]

Disrupted theta oscillation propagation in healthy elderly individuals with apolipoprotein E epsilon 4 allele.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[14324] doi:10.3390/cimb47080626 [paper, data]

Feminization of the Blood-Brain Barrier Changes the Brain Transcriptome of <i>Drosophila melanogaster</i> Males.

Journal: Current issues in molecular biology

Status: data only, 1 dataset cited

[14325] doi:10.7554/elife.102392 [paper, repository]

Acute aerobic exercise intensity does not modulate pain potentially due to differences in fitness levels and sex effects: results from a pharmacological fMRI study.

Journal: eLife

Authors' code: christianbuechel/spm_bids_pipeline (no license), jannenold/peep_analyses_mri_behavioural (no license)

Status: code verified, 194 files readable, 8 matches

[14326] doi:10.7554/elife.99547 [paper, repository]

Bridging verbal coordination and neural dynamics.

Journal: eLife

Authors' code: isaiih/VerbalCoord-NeuralDyna (MIT)

Status: code verified, 4 files readable, 3 matches

Tuesday, 5 August 2025 (43 papers, 10 on this page)

[14327] doi:10.1002/mrm.70002 [paper, repository]

Image space formalism of convolutional neural networks for k-space interpolation.

Journal: Magnetic resonance in medicine

Authors' code: pdawood/imageSpaceRaki (MIT)

Status: code verified, 22 files readable, 5 matches

[14328] doi:10.1002/mrm.70013 [paper, repository]

Optimization of deep learning-based denoising for arterial spin labeling: Effects of averaging and training strategies.

Journal: Magnetic resonance in medicine

Authors' code: OSF gq7zw (no license)

Status: code verified, 2 files readable, 3 matches

[14329] doi:10.1007/s00259-025-07454-1 [paper]

First evaluation in multiple sclerosis using PET tracer [<sup>18</sup>F]3F4AP demonstrates heterogeneous binding across lesions.

Journal: European journal of nuclear medicine and molecular imaging

Status: code on request

[14330] doi:10.1007/s10827-025-00911-8 [paper, repository]

A simplified model of NMDA-receptor-mediated dynamics in leaky integrate-and-fire neurons.

Journal: Journal of computational neuroscience

Authors' code: janskaar/approximate_NMDA_model (no license), Zenodo 12624784 (GPL-2.0)

Status: code verified, 14 files readable, 1 match

[14331] doi:10.1016/j.bpsgos.2025.100577 [paper, repository]

Epigenetic and Structural Brain Aging and Their Associations With Major Depressive Disorder.

Journal: Biological psychiatry global open science

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable

[14332] doi:10.1016/j.celrep.2025.116125 [paper, repository]

The neurexin gene family regulates olfactory glomerular formation.

Journal: Cell reports

Authors' code: Greerlab/Nxrn_2023_paper (no license), Zenodo 15697351 (CC-BY-4.0), elisadonnard/ORdeconvolution (GPL-3.0)

Status: code verified, 11 files readable, 1 match

[14333] doi:10.1016/j.cub.2025.07.026 [paper, data]

Representational drift gates critical-period plasticity in mouse visual cortex.

Journal: Current biology : CB

Status: code on request, 1 dataset cited

[14334] doi:10.1016/j.dib.2025.111948 [paper, data]

Targeted lipidomics dataset of central nervous system and plasma from mice with experimental autoimmune encephalomyelitis.

Journal: Data in brief

Status: data only, 3 datasets cited

[14335] doi:10.1016/j.isci.2025.113246 [paper, data]

Addressing neuroinflammation in human induced pluripotent stem cell-derived central nervous system neurospheroids.

Journal: iScience

Status: code on request, 1 dataset cited

[14336] doi:10.1016/j.isci.2025.113283 [paper, data]

Conifer metabolite pisiferic acid restores activity in human Kv1.2 potassium channels carrying pathogenic sequence variants.

Journal: iScience

Status: data only, 1 dataset cited

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.