Every paper, by date: page 66

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 66 of 200: 30 July 2025 to 23 July 2025.

Wednesday, 30 July 2025 (39 papers, 23 on this page)

[14561] doi:10.1038/s41597-025-05619-z [paper, repository]

High-Resolution Ultrasound Data for AI-Based Segmentation in Mouse Brain Tumor.

Journal: Scientific data

Authors' code: figshare 27237894 (CC-BY-4.0)

Status: code verified

[14562] doi:10.1038/s41598-025-09610-x [paper, repository]

Cochlear implant re-mapping informed by measures of viability of the electrode-neural interface: a systematic review with meta-analysis.

Journal: Scientific reports

Authors' code: supp:PMC12310961/41598_2025_9610_MOESM5_ESM.ipynb (no license)

Status: code verified, 1 file readable, 2 matches

[14563] doi:10.1038/s41598-025-11102-x [paper, repository]

Representational drift as the consequence of ongoing memory storage.

Journal: Scientific reports

Authors' code: FDevalle/representational-drift (no license)

Status: code verified, 5 files readable

[14564] doi:10.1038/s41598-025-11754-9 [paper, data]

Histopathological-based brain tumor grading using 2D-3D multi-modal CNN-transformer combined with stacking classifiers.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14565] doi:10.1038/s41598-025-13591-2 [paper, data]

Deep learning-driven brain tumor classification and segmentation using non-contrast MRI.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14566] doi:10.1038/s42003-025-08492-z [paper, repository]

The neuroreceptors and transporters underlying spontaneous brain activity.

Journal: Communications biology

Authors' code: OSF 58vxd (no license)

Status: code verified, 3 files readable, 3 matches

[14567] doi:10.1038/s42003-025-08497-8 [paper, repository]

Text-related functionality and dynamics of visual human pre-frontal activations revealed through neural network convergence.

Journal: Communications biology

Authors' code: OSF a2bjg (no license), Zenodo 7813404 (CC-BY-4.0)

Status: code verified, 17 files readable, 2 matches

[14568] doi:10.1038/s44319-025-00538-x [paper]

Cell-autonomous GABAARs are essential for NMDAR-mediated synaptic transmission, LTP, and spatial memory.

Journal: EMBO reports

Status: data only

[14569] doi:10.1073/pnas.2504774122 [paper, repository]

Lysosomal glucocerebrosidase is needed for ciliary Hedgehog signaling: A convergent pathway contributing to Parkinson's disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 12753029 (CC-BY-4.0), Zenodo 15801264 (CC-BY-4.0)

Status: code verified

[14570] doi:10.1073/pnas.2505965122 [paper, repository]

Trauma-predictive brain network connectivity adaptively responds to mild acute stress.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: felhardi/TraumaConnCPM (no license)

Status: code verified, 14 files readable, 9 matches

[14571] doi:10.1098/rsbl.2025.0132 [paper, data]

Decoding thermal resilience in fish: acute warming tolerance is associated with neural failure in rainbow trout.

Journal: Biology letters

Status: data only, 1 dataset cited

[14572] doi:10.1098/rsob.250200 [paper, repository]

Long-read RNA-sequencing reveals transcript-specific regulation in human-derived cortical neurons.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.7943429 (no license)

Status: code found, still to be checked

[14573] doi:10.1113/jp287804 [paper, data]

Transcutaneous spinal random noise stimulation enhances motor memory consolidation and corticospinal transmission in humans.

Journal: The Journal of physiology

Status: data only, 1 dataset cited

[14574] doi:10.1126/sciadv.adt9778 [paper, data]

Ultrasound matrix imaging for 3D transcranial in vivo localization microscopy.

Journal: Science advances

Status: data only, 1 dataset cited

[14575] doi:10.1126/sciadv.adu9838 [paper, repository]

Revealing rhythm categorization in human brain activity.

Journal: Science advances

Authors' code: OSF 9h43j (no license)

Status: code verified, 58 files readable, 11 matches

[14576] doi:10.1126/sciadv.adx3846 [paper, data]

GPR161 mechanosensitivity at the primary cilium drives neuronal saltatory migration.

Journal: Science advances

Status: data only, 1 dataset cited

[14577] doi:10.1186/s12888-025-07209-0 [paper, data]

Integrative multi-omics data from early development to identify the genes and cell types underlying attention-deficit/hyperactivity disorder.

Journal: BMC psychiatry

Status: data only, 4 datasets cited

[14578] doi:10.1371/journal.pbio.3003318 [paper, repository]

Lineage trajectories and fate determinants of postnatal neural stem cells and ependymal cells in the developing ventricular zone.

Journal: PLoS biology

Authors' code: sibszheng/VZ_development (no license), Zenodo 15803123 (CC-BY-4.0)

Status: code verified, 10 files readable, 7 matches

[14579] doi:10.1523/eneuro.0430-24.2025 [paper, repository]

Examining Relationships between Functional and Structural Brain Network Architecture, Age, and Attention Skills in Early Childhood.

Journal: eNeuro

Authors' code: McIntosh-Lab/Rokos2025_SCFC_NetworkAnalyses (Apache-2.0)

Status: code verified, 13 files readable, 4 matches

[14580] doi:10.1523/jneurosci.1871-24.2025 [paper, repository]

Unveiling Cortical Criticality Changes along the Prodromal to the Overt Continuum of Alpha-Synucleinopathy.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: MonicaRoascio/RBD-criticality (no license)

Status: code verified, 4 files readable, 3 matches

[14581] doi:10.3389/fnins.2025.1604545 [paper, repository]

Equivariant spherical CNNs for accurate fiber orientation distribution estimation in neonatal diffusion MRI with reduced acquisition time.

Journal: Frontiers in neuroscience

Authors' code: H-Snoussi/sCNN-FOD-neonatal (GPL-3.0)

Status: code verified, 15 files readable, 10 matches

[14582] doi:10.3390/diagnostics15151919 [paper, data]

Performance of Large Language Models in Recognizing Brain MRI Sequences: A Comparative Analysis of ChatGPT-4o, Claude 4 Opus, and Gemini 2.5 Pro.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[14583] doi:10.3390/jcm14155372 [paper, data]

Surgical Versus Conservative Management of Supratentorial ICH: A Single-Center Retrospective Analysis (2017-2023).

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

Tuesday, 29 July 2025 (33 papers)

[14584] doi:10.1007/s00401-025-02913-3 [paper, repository]

Single-cell transcriptomic landscape of the neuroimmune compartment in amyotrophic lateral sclerosis brain and spinal cord.

Journal: Acta neuropathologica

Authors' code: jtuddenham/ALS_sc_microglia (no license)

Status: code verified, 10 files readable, 7 matches

[14585] doi:10.1007/s11064-025-04499-4 [paper, data]

Candesartan Mitigates Perioperative Neurocognitive Disorders by Modulating Hypertension-Linked Neuroinflammatory Factor.

Journal: Neurochemical research

Status: data only, 1 dataset cited

[14586] doi:10.1016/j.celrep.2025.116081 [paper, repository]

Disruption of hippocampal-prefrontal neural dynamics and risky decision-making in a mouse model of Alzheimer's disease.

Journal: Cell reports

Authors' code: KimLab-UW-NSB/5xfad-hpc-pfc-neural-dynamics (no license)

Status: code verified, 15 files readable, 3 matches

[14587] doi:10.1016/j.isci.2025.113229 [paper]

Inducible NMDA receptor knockdown reveals a maintenance phase in dendritic refinement of barrel cortex neurons.

Journal: iScience

Status: code on request

[14588] doi:10.1016/j.isci.2025.113232 [paper, data]

Mating status-dependent dopaminergic modulation of auditory sensory neurons in <i>Drosophila</i>.

Journal: iScience

Status: code on request, 2 datasets cited

[14589] doi:10.1016/j.xpro.2025.103996 [paper]

Protocol to study adenosine release in the adult mouse hippocampus using a genetically encoded sensor, 2-photon live imaging, and fiber photometry.

Journal: STAR protocols

Status: code on request

[14590] doi:10.1038/s41467-025-62311-x [paper, repository]

Sleep drive, not total sleep amount, increases seizure risk.

Journal: Nature communications

Authors' code: Zenodo 15619740 (CC-BY-4.0), cthsu86/cynthiseize (no license)

Status: code verified, 53 files readable

[14591] doi:10.1038/s41514-025-00260-x [paper]

A novel deep learning-based brain age prediction framework for routine clinical MRI scans.

Journal: npj aging

Status: code on request

[14592] doi:10.1038/s41597-025-05482-y [paper, repository]

Multimodal dataset linking wide-field calcium imaging to behavior changes in operant lever-pull task in mice.

Journal: Scientific data

Authors' code: BraiDyn-BC/bdbc-data-pipeline (MIT)

Status: code verified, 4 files readable, 1 match

[14593] doi:10.1038/s41598-025-03472-z [paper, data]

A hybrid filtering and deep learning approach for early Alzheimer's disease identification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14594] doi:10.1038/s41598-025-10783-8 [paper]

An integrative analysis of cell-specific transcriptomics and nuclear proteomics of sleep-deprived mouse cerebral cortex.

Journal: Scientific reports

Status: data only

[14595] doi:10.1038/s41598-025-11288-0 [paper, repository]

Functional neuroplasticity in chronic post-stroke aphasia following a singing intervention in a cross-over randomised trial.

Journal: Scientific reports

Authors' code: es.mathworks.com/matlabcentral/fileexchange (no license), noechan/PSA_fMRI_ms (no license)

Status: code verified, 101 files readable, 11 matches

[14596] doi:10.1038/s41598-025-11728-x [paper, data]

Increased breathlessness in post-COVID syndrome despite normal breathing patterns in a rebreathing challenge.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14597] doi:10.1073/pnas.2426758122 [paper, repository]

Exact linear theory of perturbation response in a space- and feature-dependent cortical circuit model.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: hchau630/chau-2024-exact (MIT)

Status: code verified, 109 files readable, 4 matches

[14598] doi:10.1111/jsr.70161 [paper, repository]

EEG Brain Rhythms During Resting-State Wakefulness and Sleep in Elderly Expert Meditators.

Journal: Journal of sleep research

Authors' code: Frederik-D-Weber/sleeptrip (GPL-2.0)

Status: code verified, 2,000 files readable, 2 matches

[14599] doi:10.1162/netn.a.20 [paper, repository]

Idiosyncrasy and generalizability of contraceptive- and hormone-related functional connectomes across the menstrual cycle.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 13356570 (CC-BY-4.0), 62442katieb/idconn (MIT)

Status: code verified, 54 files readable, 2 matches

[14600] doi:10.1162/netn.a.21 [paper, repository]

Alterations in topology, cost, and dynamics of gamma-band EEG functional networks in a preclinical model of traumatic brain injury.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: lukewtait/AlzheimersBNI (GPL-3.0)

Status: code verified, 8 files readable

[14601] doi:10.1162/netn_a_00455 [paper, repository]

The exponential distance rule-based network model predicts topology and reveals functionally relevant properties of the <i>Drosophila</i> projectome.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: bpentek/EDRmodel (no license), navis-org/fafbseg-py (GPL-3.0), navis-org/fafbseg-py):JFRC2 (no license), navis-org/fafbseg-py).EDR (no license)

Status: code verified, 15 files readable, 1 match

[14602] doi:10.1162/netn_a_00457 [paper, repository]

Jointly estimating individual and group networks from fMRI data.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: vandenman/supplementJointlyEstimating (no license), Zenodo 6770120 (CC-BY-4.0), floristijhuis/HCP-rfMRI-repository (no license)

Status: code verified, 19 files readable

[14603] doi:10.1162/netn_a_00460 [paper, repository]

Metastable dynamics emerge from local excitatory-inhibitory homeostasis in the cortex at rest.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: francpsantos/wc_network_homeostasis (no license)

Status: code verified, 5 files readable, 8 matches

[14604] doi:10.1162/netn_a_00461 [paper, repository]

Structure-function coupling using fixel-based analysis and functional magnetic resonance imaging in Alzheimer's disease and mild cognitive impairment.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: chabld/FBA_coupling (no license), CogBrainHealthLab/FCtools (no license)

Status: code verified, 41 files readable, 9 matches

[14605] doi:10.1186/s40035-025-00499-0 [paper, data]

Axonal tau reduction ameliorates tau and amyloid pathology in a mouse model of Alzheimer's disease.

Journal: Translational neurodegeneration

Status: data only, 1 dataset cited

[14606] doi:10.1371/journal.pbio.3003277 [paper, repository]

Mapping cerebral blood perfusion and its links to multi-scale brain organization across the human lifespan.

Journal: PLoS biology

Authors' code: netneurolab/Farahani_Blood_Perfusion (no license), Zenodo 15708107 (CC-BY-4.0), LeonDLotter/ABAnnotate (GPL-3.0), benfulcher/GeneCategoryEnrichmentAnalysis (GPL-3.0), yetianmed/subcortex (MIT)

Status: code verified, 182 files readable, 29 matches

[14607] doi:10.1371/journal.pbio.3003296 [paper, repository]

Goal-directed navigation in humans and deep reinforcement learning agents relies on an adaptive mix of vector-based and transition-based strategies.

Journal: PLoS biology

Authors' code: denis-lan/navigation-strategies (no license), Zenodo 15741947 (CC-BY-4.0), OSF eu89x (no license)

Status: code verified, 311 files readable, 10 matches

[14608] doi:10.1371/journal.pcbi.1013291 [paper, repository]

A Bayesian hierarchical model of trial-to-trial fluctuations in decision criterion.

Journal: PLoS computational biology

Authors' code: robinvloeberghs/hMFC (MIT)

Status: code verified, 33 files readable, 3 matches

[14609] doi:10.1371/journal.pntd.0012824 [paper, data]

A rare case report of neuro-brucellosis with concurrence of depression, visual impairment, bilateral sensorineural hearing loss, and paraplegia.

Journal: PLoS neglected tropical diseases

Status: data only, 1 dataset cited

[14610] doi:10.1523/eneuro.0024-25.2025 [paper, repository]

A Flexible Fluid Delivery System for Rodent Behavior Experiments.

Journal: eNeuro

Authors' code: Zenodo 15874648 (MIT), harp-tech/protocol (MIT)

Status: code verified, 5 files readable

[14611] doi:10.3389/fncom.2025.1525785 [paper, data]

Computational modelling reveals neurobiological contributions to static and dynamic functional connectivity patterns.

Journal: Frontiers in computational neuroscience

Status: data only, 2 datasets cited

[14612] doi:10.3389/fneur.2025.1631064 [paper, data]

Adaptive multi-scale phase-aware fusion network for EEG seizure recognition.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[14613] doi:10.3389/fnins.2025.1620654 [paper, repository]

Contribution of individual excitatory synapses on dendritic spines to electrical signaling.

Journal: Frontiers in neuroscience

Authors' code: modeldb:2016666 (no license)

Status: code verified

[14614] doi:10.3758/s13415-025-01330-z [paper, data]

Psychopathology dimensions and the late positive potential in adolescent and young adult females.

Journal: Cognitive, affective & behavioral neuroscience

Status: data only, 1 dataset cited

[14615] doi:10.7554/elife.90905 [paper, repository]

Altered reactivity to threatening stimuli in <i>Drosophila</i> models of Parkinson's disease, revealed by a trial-based assay.

Journal: eLife

Authors' code: hangyabalazs/Drosophila-behavior-analysis (CC0-1.0)

Status: code verified, 11 files readable, 2 matches

[14616] doi:10.7717/peerj-cs.3053 [paper, repository]

3D reconstruction of toys based on adaptive scaled neural radiation field.

Journal: PeerJ. Computer science

Authors' code: supp:PMC12453728/peerj-cs-11-3053-s001.rar (no license)

Status: code verified

Monday, 28 July 2025 (35 papers)

[14617] doi:10.1002/advs.202501894 [paper, data]

Glycolytic Enzyme HK2 Phosphorylates nSMase1 to Promote Astrocytic Exosomes Biogenesis Contributing to Acute Ischemic Stroke Injury.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[14618] doi:10.1002/advs.202505492 [paper, repository]

Decoding Handwriting Trajectories from Intracortical Brain Signals for Brain-to-Text Communication.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Yaoyao-Hao/handwriting-DILATE-decoding (GPL-3.0)

Status: code verified, 16 files readable, 7 matches

[14619] doi:10.1007/s00702-025-02988-y [paper]

Assessing the effects of methylphenidate in proliferation and Wnt activity of neuronal stem cells from attention deficit/hyperactivity disorder patients.

Journal: Journal of neural transmission (Vienna, Austria : 1996)

Status: code on request

[14620] doi:10.1016/j.crmeth.2025.101117 [paper, repository]

3D-printed plugs enhance cell usage efficiency for single-cell migration and neuron axon guidance assays.

Journal: Cell reports methods

Authors' code: Zenodo 15776348 (CC-BY-4.0)

Status: code verified, 2 files readable

[14621] doi:10.1016/j.dib.2025.111934 [paper, data]

An open-access EEG dataset from indigenous African populations for schizophrenia research.

Journal: Data in brief

Status: data only, 2 datasets cited

[14622] doi:10.1016/j.jneumeth.2025.110539 [paper, repository]

Validation of structure tensor analysis for orientation estimation in brain tissue microscopy.

Journal: Journal of neuroscience methods

Authors' code: BrysonGray/structure_tensor_validation (GPL-2.0)

Status: code verified, 11 files readable, 3 matches

[14623] doi:10.1038/s41380-025-03113-x [paper, repository]

Perinatal omega-3 sex-selectively mitigates neuropsychiatric impacts of prenatal THC in the cortico-striatal-hippocampal circuit.

Journal: Molecular psychiatry

Authors' code: MHSarikahya/MALDI-IMS-Script (MIT)

Status: code verified, 3 files readable

[14624] doi:10.1038/s41392-025-02317-5 [paper, data]

Astrocytic gamma-aminobutyric acid dysregulation as a therapeutic target for posttraumatic stress disorder.

Journal: Signal transduction and targeted therapy

Status: data only, 1 dataset cited

[14625] doi:10.1038/s41467-025-61562-y [paper, repository]

A dedicated skin-to-brain circuit for cool sensation in mice.

Journal: Nature communications

Authors' code: codeocean:8677360 (no license)

Status: code found, still to be checked

[14626] doi:10.1038/s41593-025-02004-2 [paper, repository]

The synaptic architecture of layer 5 thick tufted excitatory neurons in mouse visual cortex.

Journal: Nature neuroscience

Authors' code: AllenInstitute/render-modules (BSD-2-Clause), AllenInstitute/Guidebook (no license), AllenInstitute/ET_connectivity (BSD-2-Clause), CAVEconnectome (no license)

Status: code verified, 185 files readable, 8 matches

[14627] doi:10.1038/s41593-025-02007-z [paper, data]

Astrocyte specification in the mouse septum is shaped by both developmental origin and local signals.

Journal: Nature neuroscience

Status: code on request, 1 dataset cited

[14628] doi:10.1038/s41593-025-02008-y [paper, repository]

Neural anticipation of virtual infection triggers an immune response.

Journal: Nature neuroscience

Authors' code: OSF rg9fa (no license)

Status: code verified

[14629] doi:10.1038/s41598-025-07800-1 [paper]

Single-quantum sodium MRI at 3 T for separation of mono- and bi-T<sub>2</sub> sodium signals.

Journal: Scientific reports

Status: code on request

[14630] doi:10.1038/s41598-025-10360-z [paper, data]

SNP rs615552 and lncRNA CDKN2B-AS1 influence brain cancer pathogenesis through multi-omic mechanisms.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[14631] doi:10.1038/s44319-025-00528-z [paper]

A MeA Tac1 neural circuit mediates anxiety-like behaviors in mice.

Journal: EMBO reports

Status: data only

[14632] doi:10.1073/pnas.2504172122 [paper, repository]

General anesthesia in early infancy accelerates visual cortical development.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 4aw53 (no license)

Status: empty repository

[14633] doi:10.1093/braincomms/fcaf268 [paper, data]

Connectomic stroke lesion measures provide no benefit over basic spatial lesion features in the prognosis of global stroke outcome measures.

Journal: Brain communications

Status: data only, 1 dataset cited

[14634] doi:10.1113/jp288073 [paper, repository]

State-dependent neural representations of muscle synergies in the spinal cord revealed by optogenetic stimulation.

Journal: The Journal of physiology

Authors' code: betty-hbr/Mouse_CNT (Apache-2.0)

Status: code verified, 4 files readable

[14635] doi:10.1117/1.nph.12.3.035002 [paper]

Robust photogrammetric scalp morphology estimation for functional optical neuroimaging.

Journal: Neurophotonics

Status: code on request

[14636] doi:10.1155/omcl/3242282 [paper, data]

<i>E2f1</i> Overexpression Reduces Aging-Associated DNA Damage in Cultured Cerebral Endothelial Cells and Improves Cognitive Performance in Aged Mice.

Journal: Oxidative medicine and cellular longevity

Status: data only, 1 dataset cited

[14637] doi:10.1162/imag.a.93 [paper, data]

An embodied perspective: Angular gyrus and precuneus decode selfhood in memories of naturalistic events.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 2 datasets cited

[14638] doi:10.1162/imag.a.94 [paper]

Multi-echo versus single-echo EPI sequences for task-fMRI: A comparative study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[14639] doi:10.1186/s12885-025-14454-9 [paper, repository]

Prediction of 1p/19q state in glioma by integrated deep learning method based on MRI radiomics.

Journal: BMC cancer

Authors' code: Radiomics/pyradiomics (BSD-3-Clause), sailorlee97/medicalMLsystem (no license)

Status: code verified, 77 files readable, 3 matches

[14640] doi:10.1186/s12915-025-02301-z [paper]

Targeting the complement-mTOR-autophagy axis: the role of apolipoprotein E in depression.

Journal: BMC biology

Status: data only

[14641] doi:10.1186/s40478-025-02055-3 [paper, data]

Melanoma antigens in pediatric medulloblastoma contribute to tumor heterogeneity and species-specificity of group 3 tumors.

Journal: Acta neuropathologica communications

Status: data only, 4 datasets cited

[14642] doi:10.1371/journal.pcbi.1013244 [paper, repository]

Recurrent neural networks as neuro-computational models of human speech recognition.

Journal: PLoS computational biology

Authors' code: christianbrodbeck/Eelbrain (BSD-3-Clause), christianbrodbeck/TRF-Tools (MIT), comp-cogneuro-lang/EARSHOT-MEG (no license)

Status: code verified, 352 files readable, 6 matches

[14643] doi:10.1371/journal.pcbi.1013316 [paper, repository]

Tracking causal pathways in TMS-evoked brain responses.

Journal: PLoS computational biology

Authors' code: changcaoyan/CP_TMS (no license)

Status: code verified, 13 files readable, 3 matches

[14644] doi:10.1371/journal.pone.0325207 [paper, data]

Speaker differences in volitional voice modulation reflected in empathy and functional activation patterns.

Journal: PloS one

Status: data only, 1 dataset cited

[14645] doi:10.1371/journal.pone.0326255 [paper, data]

Hyperparameter tuned deep learning-driven medical image analysis for intracranial hemorrhage detection.

Journal: PloS one

Status: data only, 1 dataset cited

[14646] doi:10.1523/eneuro.0143-25.2025 [paper, repository]

Reinforced Odor Representations in the Anterior Olfactory Nucleus Can Serve as Memory Traces for Conspecifics.

Journal: eNeuro

Authors' code: clinster/Linsteretal2025 (no license)

Status: code verified, 15 files readable

[14647] doi:10.3390/brainsci15080805 [paper, data]

Hybrid EEG Feature Learning Method for Cross-Session Human Mental Attention State Classification.

Journal: Brain sciences

Status: data only, 2 datasets cited

[14648] doi:10.3390/brainsci15080808 [paper, data]

On the Low Reliability of Sunk Cost Vignettes.

Journal: Brain sciences

Status: data only, 1 dataset cited

[14649] doi:10.3390/ijms26157299 [paper, repository]

Lifetime Variations in Prolactin Expression in the Hippocampus and Dentate Gyrus of the Rat.

Journal: International journal of molecular sciences

Authors' code: chaotix1992/IF-Grad (MIT)

Status: code verified, 5 files readable

[14650] doi:10.7554/elife.99302 [paper, repository]

Learning place cells and remapping by decoding the cognitive map.

Journal: eLife

Authors' code: bioAI-Oslo/VPC (MIT)

Status: code verified, 24 files readable, 8 matches

[14651] doi:10.7554/elife.99767 [paper, data]

Optimal information gain at the onset of habituation to repeated stimuli.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 27 July 2025 (2 papers)

[14652] doi:10.1038/s41598-025-12375-y [paper, data]

"Rationality" enhancement through anodal tDCS over the right ventrolateral prefrontal cortex.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14653] doi:10.1177/13872877251359680 [paper, repository]

Obesity-related brain atrophy is independent of Alzheimer's disease protein pathways.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: FilipMorys/MAPT_ApoE (no license)

Status: code verified, 5 files readable, 9 matches

Saturday, 26 July 2025 (14 papers)

[14654] doi:10.1007/s12152-025-09606-4 [paper, data]

Revolutionizing Brain Research Using Portable MRI in Field Settings: Public Perspectives on the Ethical and Legal Challenges.

Journal: Neuroethics

Status: data only, 1 dataset cited

[14655] doi:10.1038/s41467-025-62205-y [paper, data]

Single-cell transcriptomics of ventral forebrain progenitors identifies Evf2 enhancer lncRNA-enhancer gene guidance through direct RNA binding and RNP recruitment domains.

Journal: Nature communications

Status: data only, 1 dataset cited

[14656] doi:10.1038/s41540-025-00563-5 [paper, repository]

Unraveling regulatory feedback mechanisms in adult neurogenesis through mathematical modelling.

Journal: NPJ systems biology and applications

Authors' code: Zenodo 14944969 (CC-BY-4.0)

Status: code verified, 9 files readable, 7 matches

[14657] doi:10.1038/s41597-025-05654-w [paper, data]

An fNIRS dataset for Multimodal Speech Comprehension in Normal Hearing Individuals and Cochlear Implant Users.

Journal: Scientific data

Status: data only, 2 datasets cited

[14658] doi:10.1038/s41598-025-07299-6 [paper, data]

In vivo efficacy of NRL knockdown with cell-penetrating siRNA in retinal degeneration.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14659] doi:10.1038/s41598-025-12462-0 [paper, repository]

Modulation of consciousness in disorders of consciousness by HD-tDCS targeting frontal and posterior cortical regions.

Journal: Scientific reports

Authors' code: BIAPT/EEGapp (no license)

Status: code verified, 608 files readable, 2 matches

[14660] doi:10.1038/s41598-025-13363-y [paper]

White matter microstructure abnormalities in children experiencing neglect without other forms of maltreatment.

Journal: Scientific reports

Status: code on request

[14661] doi:10.1038/s41598-025-13558-3 [paper, data]

Longitudinal dynamics of clinical and neurophysiological changes in parkinson's disease over four and a half years.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14662] doi:10.1038/s42003-025-08540-8 [paper, data]

EEG neural indicator of temporal integration in the human auditory brain with clinical implications.

Journal: Communications biology

Status: data only, 1 dataset cited

[14663] doi:10.1111/acel.70184 [paper]

Aerobic Exercise Attenuates Autophagy-Lysosomal Flux Deficits via β2-AR-Mediated ESCRT-III Subunit CHMP4B in Mice With Human MAPT P301L.

Journal: Aging cell

Status: data only

[14664] doi:10.1162/opmi.a.15 [paper, repository]

Successful Prediction Is Associated With Enhanced Encoding.

Journal: Open mind : discoveries in cognitive science

Authors' code: OSF m7und (no license)

Status: code verified

[14665] doi:10.1186/s13195-025-01829-0 [paper, data]

Reductions in brainstem volume as a key macrostructural indicator in at-risk populations for Alzheimer's disease.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[14666] doi:10.1186/s13643-025-02890-4 [paper, repository]

Is noxious stimulus-evoked electroencephalography response a reliable, valid, and interpretable outcome measure to assess analgesic efficacy in neonates? A systematic review and individual participant data (IPD) meta-analysis protocol.

Journal: Systematic reviews

Authors' code: OSF 6uhze (no license)

Status: empty repository

[14667] doi:10.3390/medsci13030098 [paper, repository]

Predicting Stroke Etiology with Radiomics: A Retrospective Study.

Journal: Medical sciences (Basel, Switzerland)

Authors' code: scikit-learn.org/stable/modules (no license)

Status: code verified

Friday, 25 July 2025 (38 papers)

[14668] doi:10.1002/mrm.70009 [paper, data]

Fiber orientation-dependent T<sub>1</sub> angular features in human white matter at 1.5 T, 3 T, and 7 T.

Journal: Magnetic resonance in medicine

Status: data only, 2 datasets cited

[14669] doi:10.1016/j.celrep.2025.116029 [paper, repository]

Transformation of radial glia into postnatal neural stem cells depends on birth.

Journal: Cell reports

Authors' code: khodosevichlab/preterm_project_2_code_repo (no license), kharchenkolab/cacoa (no license)

Status: code verified, 24 files readable, 4 matches

[14670] doi:10.1016/j.cub.2025.07.007 [paper]

Quantifying the link between retinal performance and the optomotor response.

Journal: Current biology : CB

Status: code on request

[14671] doi:10.1016/j.fmre.2025.07.010 [paper, data]

A brief guideline for the studies of structure-function relationship of ion channels using AlphaFold3.

Journal: Fundamental research

Status: data only, 1 dataset cited

[14672] doi:10.1016/j.isci.2025.113198 [paper, data]

Nrf2 controls homeostatic transcriptional signatures and inflammatory responses in a cell-type specific manner in the adult mouse brain.

Journal: iScience

Status: data only, 1 dataset cited

[14673] doi:10.1016/j.isci.2025.113213 [paper]

Global and local nature of cortical slow waves.

Journal: iScience

Status: code on request

[14674] doi:10.1021/acs.jmedchem.5c00457 [paper, data]

Design, Synthesis and Preclinical Evaluation of a Brain-Permeable PET Tracer for P2Y12 Receptor Imaging in the Brain.

Journal: Journal of medicinal chemistry

Status: data only, 2 datasets cited

[14675] doi:10.1038/s41380-025-03130-w [paper, repository]

Altered processing of self-produced sensations in psychosis at cortical and spinal levels.

Journal: Molecular psychiatry

Authors' code: OSF r3ue7 (no license)

Status: code verified, 10 files readable

[14676] doi:10.1038/s41398-025-03480-7 [paper]

Exploring the capabilities of repetitive transcranial magnetic stimulation in major depressive disorder: Dynamic causal modeling of the neural network.

Journal: Translational psychiatry

Status: code on request

[14677] doi:10.1038/s41467-025-62004-5 [paper, repository]

Large-scale RNA-Seq mining reveals ciclopirox olamine induces TDP-43 cryptic exons.

Journal: Nature communications

Authors' code: snapmine.idies.jhu.edu (no license), irikas/SnapMine_Paper (no license), ssec-jhu/snaptron-query (BSD-3-Clause)

Status: code verified, 61 files readable, 8 matches

[14678] doi:10.1038/s41467-025-62188-w [paper, data]

Distinct role of claustrum and anterior cingulate cortex bidirectional circuits in methamphetamine taking and seeking.

Journal: Nature communications

Status: data only, 1 dataset cited

[14679] doi:10.1038/s41598-025-07427-2 [paper, data]

Enhanced EEG signal classification in brain computer interfaces using hybrid deep learning models.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14680] doi:10.1038/s41598-025-09417-w [paper, data]

Single nucleus RNA sequencing profile analysis to reveal cell type specific common molecular drivers of Parkinson's disease and therapeutic agents.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14681] doi:10.1038/s41598-025-09919-7 [paper, data]

The fecal metabolome and microbiome are altered in dogs with idiopathic epilepsy compared to healthy dogs.

Journal: Scientific reports

Status: data only, 1 dataset cited

[14682] doi:10.1038/s41598-025-11613-7 [paper]

A multi-stage auditory model for binaural sound localization using the locally competitive algorithm.

Journal: Scientific reports

Status: code on request

[14683] doi:10.1038/s41598-025-12049-9 [paper, repository]

Classification of musculoskeletal pain using machine learning.

Journal: Scientific reports

Authors' code: tarekhemdan/Musculoskeletal_Pain (no license)

Status: code verified, 12 files readable, 3 matches

[14684] doi:10.1093/pnasnexus/pgaf234 [paper, repository]

An imaging genetics network model for clinical score assessment in Alzheimer's disease.

Journal: PNAS nexus

Authors' code: klingsly/dsIgn (no license)

Status: code verified, 5 files readable, 1 match

[14685] doi:10.1101/2025.07.23.25331971 [paper, repository]

Human brain MRI data of CSF tracer evolution over 72h for data-integrated simulations

Journal: medRxiv (preprint)

Authors' code: jorgenriseth/gonzo (no license), jorgenriseth/gMRI2FEM (MIT), timokoch/dumux-braindiffusion-miniapp (GPL-3.0)

Status: code verified, 99 files readable

[14686] doi:10.1111/ppe.70052 [paper, repository]

Phenotyping Neurodisability in Hospital Records in England: A National Birth Cohort Using Linked Administrative Data.

Journal: Paediatric and perinatal epidemiology

Authors' code: UCL-ECHILD (no license), UCL-CHIG/HOPE_neurodisability (MIT)

Status: code verified, 2 files readable

[14687] doi:10.1117/1.nph.12.3.035001 [paper, repository]

Catheter-based polarimetric imaging to complement MRI for deep brain stimulation neurosurgery.

Journal: Neurophotonics

Authors' code: CBORT-NCBIB/GuideStarOpticAxisReconstruction (no license)

Status: code verified, 38 files readable, 2 matches

[14688] doi:10.1126/sciadv.adv0986 [paper, repository]

Motifs of human high-frequency oscillations structure processing and memory of continuous audiovisual narratives.

Journal: Science advances

Authors' code: OSF dzfpr (no license)

Status: code verified, 37 files readable, 2 matches

[14689] doi:10.1159/000547639 [paper, data]

Stereotactic Focused Ultrasound Mesencephalotomy for the Treatment of Head and Neck Cancer Pain.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[14690] doi:10.1162/imag.a.81 [paper, repository]

High-resolution quantitative T<sub>2</sub> mapping of the human brain at 7 T using a multi-echo spin-echo sequence and dictionary-based modeling.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: schmidt-jo/PyMRItools (AGPL-3.0), Zenodo 13992708 (CC-BY-4.0)

Status: code verified, 206 files readable, 7 matches

[14691] doi:10.1162/imag.a.92 [paper]

Functional MRI reveals regional changes of brain activity in rats following longitudinal focal high-density theta burst stimulation (hdTBS).

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[14692] doi:10.1186/s11658-025-00765-z [paper, data]

NT2-derived astrocyte-neuron co-culture reflects physiological relevance and offers research validity.

Journal: Cellular & molecular biology letters

Status: data only, 5 datasets cited

[14693] doi:10.1186/s40478-025-02077-x [paper, data]

Proteomics of the temporal cortex in semantic dementia reveals brain-region specific molecular pathology and regulation of the TDP-43-ANXA11 interactome.

Journal: Acta neuropathologica communications

Status: data only, 8 datasets cited

[14694] doi:10.1523/eneuro.0006-25.2025 [paper, repository]

EEG Data Quality in Large-Scale Field Studies in India and Tanzania.

Journal: eNeuro

Authors' code: narayanps/SapienLabsDataQuality (no license)

Status: code verified, 3 files readable

[14695] doi:10.3389/fbioe.2025.1611414 [paper, repository]

Neural-enhanced motion-to-EMG: refining simulated muscle activity from musculoskeletal models using a Seq2Seq approach.

Journal: Frontiers in bioengineering and biotechnology

Authors' code: simtk.org/projects/nem2e (no license)

Status: code verified

[14696] doi:10.3389/fimmu.2025.1614549 [paper]

Single-cell and spatial atlas of glioblastoma heterogeneity: characterizing the <i>PCLAF</i>+ subtype and <i>YEATS4</i>'s oncogenic role.

Journal: Frontiers in immunology

Status: data only

[14697] doi:10.3390/ijms26157180 [paper, repository]

AI-Powered Mice Behavior Tracking and Its Application for Neuronal Manifold Analysis Based on Hippocampal Ensemble Activity in an Alzheimer's Disease Mice Model.

Journal: International journal of molecular sciences

Authors' code: Biomed-imaging-lab/AI-mouse-detector (no license)

Status: code verified, 10 files readable, 2 matches

[14698] doi:10.3758/s13423-025-02731-4 [paper, repository]

Hyper-speed meaning and form predictions: An EEG-based representational similarity analysis.

Journal: Psychonomic bulletin & review

Authors' code: OSF qye3a (no license)

Status: code verified, 3 files readable

[14699] doi:10.3758/s13428-025-02755-7 [paper, repository]

A novel method for modeling tonic and phasic pupil dynamics in humans.

Journal: Behavior research methods

Authors' code: OSF cv24f (no license), ihrke/pypillometry (MIT), ihrke.github.io/pypillometry (no license)

Status: code verified, 88 files readable, 7 matches

[14700] doi:10.7554/elife.101327 [paper, repository]

A SMARTTR workflow for multi-ensemble atlas mapping and brain-wide network analysis.

Journal: eLife

Authors' code: mjin1812.github.io/smarttr (no license), mjin1812/SMARTTR (GPL-3.0)

Status: code verified, 45 files readable, 12 matches

[14701] doi:10.7554/elife.101526 [paper, repository]

No effect of additional education on long-term brain structure, a preregistered natural experiment in thousands of individuals.

Journal: eLife

Authors' code: njudd/eduBrain (no license), njudd/EduTelomere (no license)

Status: code verified, 8 files readable, 8 matches

[14702] doi:10.7554/elife.106284 [paper, repository]

Neocortical layer-5 tLTD relies on non-ionotropic presynaptic NMDA receptor signaling.

Journal: eLife

Authors' code: pj-sjostrom/MultiPatch (GPL-3.0)

Status: empty repository, 2 files readable

[14703] doi:10.7554/elife.106389 [paper, data]

Population-level morphological analysis of paired CO<sub>2</sub>- and odor-sensing olfactory neurons in <i>D. melanogaster</i> via volume electron microscopy.

Journal: eLife

Status: data only, 1 dataset cited

[14704] doi:10.7554/elife.88598 [paper, repository]

Cell type-specific contributions to a persistent aggressive internal state in female <i>Drosophila</i>.

Journal: eLife

Authors' code: ceschretter/Chiu2025_Persistence_BehavioralAnalysis (GPL-3.0)

Status: code verified, 5 files readable, 1 match

[14705] doi:10.7554/elife.97125 [paper, repository]

Cingulate cortex shapes early postnatal development of social vocalizations.

Journal: eLife

Authors' code: Guru-learn/Cingulotomy_Vocalization (GPL-3.0), kissmyjazz/cingulotomy-histology (MIT)

Status: code verified, 18 files readable, 7 matches

Thursday, 24 July 2025 (39 papers)

[14706] doi:10.1002/erv.70018 [paper]

GDF15 Is Elevated in Eating Disorders and Is Involved in the Gut-Brain Axis via Ghrelin.

Journal: European eating disorders review : the journal of the Eating Disorders Association

Status: code on request

[14707] doi:10.1007/s12021-025-09738-1 [paper, repository]

Scikit-NeuroMSI: A Generalized Framework for Modeling Multisensory Integration.

Journal: Neuroinformatics

Authors' code: renatoparedes/scikit-neuromsi (BSD-3-Clause), renatoparedes/NeuroMSI-Network (no license)

Status: code verified, 81 files readable, 24 matches

[14708] doi:10.1016/j.cell.2025.06.045 [paper]

A mast cell receptor mediates post-stroke brain inflammation via a dural-brain axis.

Journal: Cell

Status: code on request

[14709] doi:10.1016/j.csbj.2025.07.033 [paper, data]

Machine learning identification of molecular targets for medulloblastoma subgroups using microarray gene fingerprint analysis.

Journal: Computational and structural biotechnology journal

Status: data only, 2 datasets cited

[14710] doi:10.1016/j.isci.2025.113028 [paper, repository]

Neural encoding of auditory rhythm beyond cortical auditory areas before the age of term.

Journal: iScience

Authors' code: mredalati/Stimuli-for-fNIRS-recording (no license), bunpc/homer3 (BSD-2-Clause), bunpc/atlasviewer (BSD-2-Clause)

Status: code verified, 1,517 files readable, 3 matches

[14711] doi:10.1016/j.isci.2025.113078 [paper]

Environmental stress promotes the persistence of juvenile traits in olfactory neurons as a protective mechanism.

Journal: iScience

Status: code on request

[14712] doi:10.1016/j.isci.2025.113197 [paper]

Nighttime caffeine intake increases motor impulsivity.

Journal: iScience

Status: code on request

[14713] doi:10.1016/j.isci.2025.113208 [paper, repository]

5-HT6R-ATR-primary cilia network supports morphine-related memory extinction in the medial prefrontal cortex.

Journal: iScience

Authors' code: junlunliu/rna-seq (no license)

Status: code verified, 2 files readable, 1 match

[14714] doi:10.1016/j.jgr.2025.07.003 [paper, data]

Ginsenoside Rc mitigates hippocampal neuronal damage and cognitive impairment in vascular dementia rats via the pY705-Stat3/Foxo3a and pS727-Stat3/GRIM-19 pathways.

Journal: Journal of ginseng research

Status: data only, 1 dataset cited

[14715] doi:10.1016/j.xpro.2025.103980 [paper, repository]

Protocol update to: High-throughput scNMT protocol for multiomics profiling of single cells from mouse brain and pancreatic organoids.

Journal: STAR protocols

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[14716] doi:10.1038/s41467-025-60912-0 [paper, repository]

Self-driving microscopy detects the onset of protein aggregation and enables intelligent Brillouin imaging.

Journal: Nature communications

Authors' code: c4science.ch/source/tomphaseret (no license), kibb/SDM (no license), Zenodo 15464500 (CC-BY-4.0)

Status: code verified, 1 file readable

[14717] doi:10.1038/s41467-025-61928-2 [paper, repository]

Human hippocampal reactivation of amygdala encoding-related gamma patterns during aversive memory retrieval.

Journal: Nature communications

Authors' code: mnlcosta/AversiveMemoryRetrieval (no license), Zenodo 15736783 (CC-BY-4.0)

Status: code verified, 30 files readable, 9 matches

[14718] doi:10.1038/s41467-025-62114-0 [paper, repository]

DNMT1-mediated regulation of somatostatin-positive interneuron migration impacts cortical architecture and function.

Journal: Nature communications

Authors' code: NabbefeldG/MS_task_gerion_V2_5 (no license), Vogel-lab/Reichard-2024_DNMT1-Mediated_Regulation-of_IN_Migration (no license), musall/dnmt1SOM (no license)

Status: code verified, 148 files readable, 9 matches

[14719] doi:10.1038/s41467-025-62210-1 [paper, repository]

Conceptual knowledge increasingly supports emotion understanding as perceptual contribution declines with age.

Journal: Nature communications

Authors' code: Zenodo 15647245 (MIT), Zenodo 15462829 (CC-BY-4.0), 2201110720/childfer_data (no license)

Status: code verified, 8 files readable, 3 matches

[14720] doi:10.1038/s41467-025-62226-7 [paper, repository]

Scalable 3D reconstruction for X-ray single particle imaging with online machine learning.

Journal: Nature communications

Authors' code: JayShenoy/xrai (MIT)

Status: code verified, 114 files readable, 8 matches

[14721] doi:10.1038/s41531-025-01049-1 [paper, repository]

Unique nigral and cortical pathways implicated by epigenomic and transcriptional analyses in rotenone Parkinson's model.

Journal: NPJ Parkinson's disease

Authors' code: Marzi-lab/rotenone_rat_ChIP (no license)

Status: code verified, 6 files readable, 6 matches

[14722] doi:10.1038/s41537-025-00647-5 [paper]

Investigating the effects of transcranial direct current stimulation (tDCS) on working memory training in individuals with schizophrenia.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[14723] doi:10.1038/s41591-025-03800-w [paper, data]

Effect of naltrexone pretreatment on ketamine-induced glutamatergic activity and symptoms of depression: a randomized crossover study.

Journal: Nature medicine

Status: data only, 1 dataset cited

[14724] doi:10.1038/s41597-025-05570-z [paper, data]

Acute Changes in Rat Tissue Gene Expression Following Exposure to Flight Relevant Hypobaria.

Journal: Scientific data

Status: data only, 1 dataset cited

[14725] doi:10.1038/s41598-025-05846-9 [paper, repository]

Neural responses to peers moderate conversation-drinking associations in daily life.

Journal: Scientific reports

Authors' code: miajov/brain-responses---peer-influence (no license), dalejn/cleanBib (MIT)

Status: code verified, 12 files readable, 2 matches

[14726] doi:10.1038/s41598-025-10812-6 [paper, repository]

Microstructural abnormalities in multiple system atrophy as revealed by conventional and rotating frame relaxation MRI parameters.

Journal: Scientific reports

Authors' code: fsl.fmrib.ox.ac.uk/fsl (no license)

Status: code verified

[14727] doi:10.1038/s44318-025-00506-0 [paper, data]

ALS-associated RNA-binding proteins promote UNC13A transcription through REST downregulation.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[14728] doi:10.1088/1741-2552/adef7f [paper, data]

A primary mechanism for efficacy of the ketogenic diet may be energy repletion at the tripartite synapse.

Journal: Journal of neural engineering

Status: data only, 1 dataset cited

[14729] doi:10.1101/2025.07.21.665924 [paper, data]

Charting structural brain asymmetry across the human lifespan

Journal: bioRxiv (preprint)

Status: data only, 15 datasets cited

[14730] doi:10.1111/bpa.70034 [paper, data]

Dysregulation of the endosomal sorting complex III is linked to neurodegeneration in progressive multiple sclerosis.

Journal: Brain pathology (Zurich, Switzerland)

Status: data only, 1 dataset cited

[14731] doi:10.1111/cas.70160 [paper, data]

Single-Cell Transcription Reveals the Fibroblast Heterogeneity and Neural Cells' Significance in Desmoid Fibromatosis.

Journal: Cancer science

Status: data only, 1 dataset cited

[14732] doi:10.1111/epi.18549 [paper, repository]

The transcriptomic signature of DEPDC5 KO induced mTOR hyperactivation in human neurons and its response to rapamycin treatment.

Journal: Epilepsia

Authors' code: kjpmolgenlab.github.io/cepter_rnaseq (no license), KJPMolgenLab/DEPDC5_D62_Analysis (MIT)

Status: code verified, 29 files readable, 2 matches

[14733] doi:10.1162/imag.a.85 [paper, repository]

Linking microscopy to diffusion MRI with degenerate biophysical models: An application of the Bayesian EstimatioN of CHange (BENCH) framework.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: danzlkor/continuous-bench (no license)

Status: code verified, 68 files readable, 9 matches

[14734] doi:10.1162/imag.a.87 [paper, repository]

Functional organization of the neonatal thalamus across development depicted by functional MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Medical-Image-Analysis-Laboratory/knit_infant_thalamic_nuclei (MIT)

Status: code verified, 7 files readable, 2 matches

[14735] doi:10.1162/imag.a.88 [paper, repository]

Increasing spectral DCM flexibility and speed by leveraging Julia's ModelingToolkit and automated differentiation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Neuroblox/Neuroblox.jl (other), Neuroblox/SpectralDynamicCausalModeling (no license), Neuroblox/Spectral-Dynamic-Causal-Modeling (no license)

Status: code verified, 60 files readable, 14 matches

[14736] doi:10.1186/s12868-025-00965-5 [paper, data]

Mir-199a-3p aggravates neuroinflammation in an Alzheimer's disease transgenic mouse model by promoting M1-polarization microgliaMir-199a-3p M1.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[14737] doi:10.1186/s13195-025-01782-y [paper, data]

Genome-wide association studies of Alzheimer's disease and related disorders stratified by sex, onset age, and Apolipoprotein E genotype reveal novel risk loci in African Americans.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[14738] doi:10.1371/journal.pone.0327828 [paper, repository]

Assessing quantitative MRI techniques using multimodal comparisons.

Journal: PloS one

Authors' code: neuralabc/paper_QuantitativeMetricComparisons (Apache-2.0)

Status: code verified, 8 files readable, 2 matches

[14739] doi:10.1523/eneuro.0356-23.2025 [paper, data]

The Effects of Mindfulness Meditation on Mechanisms of Attentional Control in Young and Older Adults: A Preregistered Eye Tracking Study.

Journal: eNeuro

Status: data only, 1 dataset cited

[14740] doi:10.1523/eneuro.0383-24.2025 [paper, repository]

Spiking Neural Network Models of Interaural Time Difference Extraction via a Massively Collaborative Process.

Journal: eNeuro

Authors' code: comob-project/snn-sound-localization (MIT), neural-reckoning.github.io/cosyne-tutorial-2022 (no license), Zenodo 7044500 (other-open), neural-reckoning/cosyne-tutorial-2022 (MIT)

Status: code verified, 36 files readable, 10 matches

[14741] doi:10.3389/fnagi.2025.1617611 [paper, repository]

Estimating progression of Alzheimer's disease with extracellular vesicle-related multi-omics risk models.

Journal: Frontiers in aging neuroscience

Authors' code: maomao853/AD-Multi-Omics-EV-Risk-Model (no license)

Status: dead link

[14742] doi:10.3390/diagnostics15151863 [paper, data]

Role of Feature Diversity in the Performance of Hybrid Models-An Investigation of Brain Tumor Classification from Brain MRI Scans.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[14743] doi:10.3390/metabo15080499 [paper, repository]

Investigating Lipid and Energy Dyshomeostasis Induced by Per- and Polyfluoroalkyl Substances (PFAS) Congeners in Mouse Model Using Systems Biology Approaches.

Journal: Metabolites

Authors' code: BaloniLab/PFAS_Congeners_Mouse_GEMs (no license)

Status: code verified, 5 files readable, 5 matches

[14744] doi:10.7554/elife.106136 [paper, repository]

The NIH BRAIN Initiative's impacts in systems and computational neuroscience and team-scale research 2014-2023.

Journal: eLife

Authors' code: fbader2/wordcloud (CC0-1.0)

Status: code verified, 2 files readable

Wednesday, 23 July 2025 (40 papers)

[14745] doi:10.1007/s10162-025-00999-w [paper, repository]

Inhibition of Cortical Evoked Responses to Sound Pulses by Preceding Silent Gaps.

Journal: Journal of the Association for Research in Otolaryngology : JARO

Authors' code: translational-audiology-lab/TinMEG (MIT)

Status: code verified, 8 files readable, 5 matches

[14746] doi:10.1016/j.dcn.2025.101599 [paper, data]

The development of semantic integration in bilingual toddlers measured by N400.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[14747] doi:10.1016/j.isci.2025.113179 [paper]

Physiological correlates of a simple saccadic-decision task to extended objects in superior colliculus.

Journal: iScience

Status: code on request

[14748] doi:10.1016/j.isci.2025.113188 [paper]

Abnormalities of the endocannabinoid system produce piercing nuclear hernias in migrating cerebral neurons.

Journal: iScience

Status: code on request

[14749] doi:10.1016/j.mrl.2025.200225 [paper, repository]

Passive water exchange between multiple sites can explain why apparent exchange rate constants depend on ionic and osmotic conditions in gray matter.

Journal: Magnetic resonance letters

Authors' code: nathanwilliamson/MultisiteExchange (MIT)

Status: code verified, 25 files readable, 2 matches

[14750] doi:10.1016/j.patter.2025.101325 [paper, repository]

Tucano: Advancing neural text generation for Portuguese.

Journal: Patterns (New York, N.Y.)

Authors' code: Nkluge-correa/Tucano (Apache-2.0), Zenodo 15471166 (Apache-2.0)

Status: code verified, 309 files readable, 17 matches

[14751] doi:10.1016/j.xcrm.2025.102244 [paper, repository]

Recreating pathophysiology of CLN2 disease and demonstrating reversion by TPP1 gene therapy in hiPSC-derived retinal organoids and retina-on-chip.

Journal: Cell reports. Medicine

Authors' code: kachberger/Corti_et_al_TPP1 (no license)

Status: empty repository

[14752] doi:10.1016/j.xpro.2025.103978 [paper, repository]

Protocol for generation, quantification, and phenotyping of brain metastases in preclinical mouse models.

Journal: STAR protocols

Authors' code: Zenodo 15748814 (MIT), scijrb/macro_brain_area (MIT)

Status: code verified, 4 files readable

[14753] doi:10.1038/s41419-025-07874-9 [paper]

H3K14 lactylation exacerbates neuronal ferroptosis by inhibiting calcium efflux following intracerebral hemorrhagic stroke.

Journal: Cell death & disease

Status: data only

[14754] doi:10.1038/s41467-025-61309-9 [paper, repository]

Taming the chaos gently: a predictive alignment learning rule in recurrent neural networks.

Journal: Nature communications

Authors' code: TAsabuki/PredictiveAlignment (no license), Zenodo 15689459 (CC-BY-4.0)

Status: code verified, 2 files readable

[14755] doi:10.1038/s41467-025-61708-y [paper, repository]

Ultrasensitive label-free optical recording of bioelectric potentials using dioxythiophene-based electrochromic polymers.

Journal: Nature communications

Authors' code: zlab798/25NatCommDataAnalysis (no license)

Status: code verified, 1 file readable, 1 match

[14756] doi:10.1038/s41467-025-61889-6 [paper, repository]

Choroid plexus-mediated CSF secretion remains stable in aging rats via high and age-resistant metabolic activity.

Journal: Nature communications

Authors' code: Sorennorge/MacAulayLab-Age-Study (no license), Zenodo 15687756 (CC-BY-4.0)

Status: code verified, 78 files readable, 4 matches

[14757] doi:10.1038/s41467-025-61994-6 [paper, repository]

Impaired vasopressin neuromodulation of the lateral septum leads to social behavior deficits in Shank3B^+/- male mice.

Journal: Nature communications

Authors' code: hanshuting/AVP_decoder_manuscript (no license)

Status: code verified, 4 files readable

[14758] doi:10.1038/s41467-025-62133-x [paper, data]

Homeostatic scaling of dynorphin signaling by a non-canonical opioid receptor.

Journal: Nature communications

Status: data only, 1 dataset cited

[14759] doi:10.1038/s41467-025-62181-3 [paper, data]

Small intestinal γδ T17 cells promote SAE through STING/C1q-induced microglial synaptic pruning in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[14760] doi:10.1038/s41586-025-09241-2 [paper, repository]

The neural basis of species-specific defensive behaviour in Peromyscus mice.

Journal: Nature

Authors' code: doi:10.5061/dryad.q2bvq83xc (no license), Zenodo 15623649 (MIT)

Status: code verified, 7 files readable

[14761] doi:10.1038/s41586-025-09255-w [paper, repository]

A generic non-invasive neuromotor interface for human-computer interaction.

Journal: Nature

Authors' code: facebookresearch/generic-neuromotor-interface-data (CC-BY-NC-4.0)

Status: code verified, 32 files readable, 19 matches

[14762] doi:10.1038/s41586-025-09276-5 [paper, repository]

Eye structure shapes neuron function in Drosophila motion vision.

Journal: Nature

Authors' code: reiserlab/eyemap_T4 (GPL-3.0)

Status: code verified, 22 files readable, 6 matches

[14763] doi:10.1038/s41586-025-09301-7 [paper, repository]

A gut sense for a microbial pattern regulates feeding.

Journal: Nature

Authors' code: OSF 7xgfd (no license)

Status: code verified, 9 files readable, 3 matches

[14764] doi:10.1038/s41593-024-01823-z [paper, repository]

Multimodal cue integration and learning in a neural representation of head direction.

Journal: Nature neuroscience

Authors' code: Zenodo 15733533 (CC-BY-4.0), Zenodo 13270653 (CC-BY-4.0), drugowitschlab/multimodalhdcueintegrationsims (BSD-3-Clause)

Status: code verified, 38 files readable, 20 matches

[14765] doi:10.1038/s41598-025-12131-2 [paper, repository]

Assessing the stability of evoked, induced, and passive MEG responses for repeat testing with optically pumped magnetometers.

Journal: Scientific reports

Authors' code: nsrhodes/opm_retest (no license)

Status: code verified, 14 files readable, 9 matches

[14766] doi:10.1038/s42003-025-08502-0 [paper, repository]

Melanocytes and photosensory organs share a common ancestry that illuminates the origins of the neural crest.

Journal: Communications biology

Authors' code: fateevajulia/RPE-Melanocytes_notebooks (no license)

Status: code verified, 19 files readable, 4 matches

[14767] doi:10.1073/pnas.2415573122 [paper, repository]

Traveling waves link human visual and frontal cortex during working memory-guided behavior.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF gm3sq (no license)

Status: code verified, 53 files readable, 4 matches

[14768] doi:10.1073/pnas.2424315122 [paper, data]

SETDB1 ensures the continuity of embryonic to adult neural stem cells through metabolic alterations in the dentate gyrus.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[14769] doi:10.1126/sciadv.ado2837 [paper, data]

A nociceptive amygdala-striatal pathway modulating affective-motivational pain.

Journal: Science advances

Status: data only, 1 dataset cited

[14770] doi:10.1126/sciadv.ads7544 [paper, repository]

Genetic foundations of interindividual neurophysiological variability.

Journal: Science advances

Authors' code: Zenodo 15023999 (CC-BY-4.0), Epideixx/Fingerprints_Twins (no license)

Status: code verified, 46 files readable, 12 matches

[14771] doi:10.1126/sciadv.adt4945 [paper, repository]

Selective engagement of prefrontal VIP neurons in reversal learning.

Journal: Science advances

Authors' code: namboodirilab/ANCCR (no license), youngju0565/VIP_reversal (MIT)

Status: code verified, 113 files readable, 1 match

[14772] doi:10.1126/sciadv.adv6603 [paper, repository]

Neuromorphic ionic computing in droplet interface synapses.

Journal: Science advances

Authors' code: figshare 28901918 (CC-BY-4.0)

Status: code verified, 31 files readable, 4 matches

[14773] doi:10.1128/aac.00186-25 [paper, data]

A cap-dependent endonuclease inhibitor acts as a potent antiviral agent against La Crosse virus infection.

Journal: Antimicrobial agents and chemotherapy

Status: data only, 1 dataset cited

[14774] doi:10.1186/s12859-025-06232-y [paper, repository]

DiffCoRank: a comprehensive framework for discovering hub genes and differential gene co-expression in brain implant-associated tissue responses.

Journal: BMC bioinformatics

Authors' code: msureil/DiffCoRank (MIT)

Status: code verified, 5 files readable, 10 matches

[14775] doi:10.1186/s12888-025-07171-x [paper, repository]

Personalized EEG-guided brain stimulation targeting in major depression via network controllability and multi-objective optimization.

Journal: BMC psychiatry

Authors' code: figshare 2 (no license)

Status: dead link

[14776] doi:10.1371/journal.pbio.3003293 [paper, repository]

Natural sounds can be reconstructed from human neuroimaging data using deep neural network representation.

Journal: PLoS biology

Authors' code: iashin.ai/specvqgan (no license), KamitaniLab/DeepImageReconstruction (no license), brookemosby/Speech_Analysis (no license), kamitanilab/soundreconstruction (no license), Zenodo 15066806 (CC-BY-4.0)

Status: code verified, 56 files readable, 8 matches

[14777] doi:10.1371/journal.pone.0321539 [paper, data]

The effect of targeting and interceptive timing tasks on the brain waves of elite and educated athletes.

Journal: PloS one

Status: data only, 1 dataset cited

[14778] doi:10.1371/journal.pone.0326359 [paper, data]

An ICEEMDAN and SAX-based method for determining English reading comprehension status using functional near-infrared spectroscopy signals.

Journal: PloS one

Status: data only, 1 dataset cited

[14779] doi:10.1523/eneuro.0154-25.2025 [paper, repository]

EEG Signatures of Auditory Distraction: Neural Responses to Spectral Novelty in Real-World Soundscapes.

Journal: eNeuro

Authors' code: Zenodo 15182196 (CC-BY-4.0), ThorgeHaupt/Audionovelty (no license)

Status: code verified, 22 files readable, 17 matches

[14780] doi:10.2340/1651-226x.2025.44056 [paper, repository]

Radiation-induced changes of reactive astrocyte distribution in mice as a late response to partial-brain proton irradiation.

Journal: Acta oncologica (Stockholm, Sweden)

Authors' code: jo-mueller/slice2volume_codeanddocs (MIT)

Status: code verified, 12 files readable

[14781] doi:10.3389/fninf.2025.1590968 [paper, repository]

Sensitivity analysis of a mathematical model of Alzheimer's disease progression unveils important causal pathways.

Journal: Frontiers in neuroinformatics

Authors' code: git.valeria.science/medics/models (no license)

Status: code verified

[14782] doi:10.3390/biology14080915 [paper, data]

Effects of Hypoxia and Reoxygenation on Hypoxia-Responsive Genes, Physiological and Biochemical Indices in Hybrid Catfish (<i>Pelteobagrus vachelli</i> ♀ × <i>Leiocassis longirostris</i> ♂).

Journal: Biology

Status: data only, 1 dataset cited

[14783] doi:10.3390/brainsci15080782 [paper, data]

Predicting Cognitive Decline in Parkinson's Disease Using Artificial Neural Networks: An Explainable AI Approach.

Journal: Brain sciences

Status: data only, 1 dataset cited

[14784] doi:10.3390/neurosci6030068 [paper, data]

Disentangling False Memories: Gray Matter Correlates of Memory Sensitivity and Decision Bias.

Journal: NeuroSci

Status: data only, 2 datasets cited

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