Every paper, by date: page 75

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 75 of 200: 1 June 2025 to 27 May 2025.

Sunday, 1 June 2025 (90 papers, 50 on this page)

[16577] doi:10.1093/bioinformatics/btaf282 [paper, repository]

Debiased machine learning for ultra-high dimensional mediation analysis.

Journal: Bioinformatics (Oxford, England)

Authors' code: figshare 28681211 (CC-BY-4.0)

Status: code verified, 3 files readable

[16578] doi:10.1093/bioinformatics/btaf350 [paper, repository]

Gene spatial integration: enhancing spatial transcriptomics analysis via deep learning and batch effect mitigation.

Journal: Bioinformatics (Oxford, England)

Authors' code: Riandanis/Spatial_Integration_GSI (no license)

Status: code verified, 10 files readable, 2 matches

[16579] doi:10.1093/brain/awae387 [paper, repository]

Cortico-thalamic tremor circuits and their associations with deep brain stimulation effects in essential tremor.

Journal: Brain : a journal of neurology

Authors' code: data.mrc.ox.ac.uk/mrcbndu/data-sets (no license)

Status: code verified

[16580] doi:10.1093/brain/awae388 [paper, repository]

Deep learning reveals pathology-confirmed neuroimaging signatures in Alzheimer's, vascular and Lewy body dementias.

Journal: Brain : a journal of neurology

Authors' code: UTHSCSA-NAL/DeepSPARE (no license)

Status: code verified, 9 files readable, 11 matches

[16581] doi:10.1093/brain/awae399 [paper, data]

Optimizing treatment of cardiovascular risk factors in cerebral small vessel disease using genetics.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[16582] doi:10.1093/brain/awae408 [paper, repository]

Enhanced behavioural and neural sensitivity to punishments in chronic pain and fatigue.

Journal: Brain : a journal of neurology

Authors' code: OSF 82hp9 (no license)

Status: code verified

[16583] doi:10.1093/brain/awae414 [paper, data]

Distinct transcriptional changes distinguish efficient and poor remyelination in multiple sclerosis.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[16584] doi:10.1093/brain/awaf008 [paper]

Anterior-temporal network hyperconnectivity is key to Alzheimer's disease: from ageing to dementia.

Journal: Brain : a journal of neurology

Status: code on request

[16585] doi:10.1093/cercor/bhaf134 [paper, repository]

Learning to combine top-down context and feed-forward representations under ambiguity with apical and basal dendrites.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: ABL-Lab/expectation-clamp (no license), ABL-Lab/ambiguous-dataset (Apache-2.0)

Status: code verified, 66 files readable, 5 matches

[16586] doi:10.1093/cercor/bhaf143 [paper, repository]

Genetic and environmental contributions to ReHo and fALFF in early adolescence vary across brain regions.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: strikel/ReHo_fALFF_heritability (no license)

Status: code verified, 7 files readable, 4 matches

[16587] doi:10.1093/cercor/bhaf154 [paper, repository]

Multiscale cortical morphometry reveals pronounced regional and scale-dependent variations across the lifespan.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: cnnp-lab/corticalfoldinganalysistools (GPL-3.0)

Status: code verified, 772 files readable, 4 matches

[16588] doi:10.1093/cercor/bhaf157 [paper, data]

Corticospinal excitability is facilitated during coordinative action observation and motor imagery.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[16589] doi:10.1093/cercor/bhaf161 [paper, data]

It's all connected! Multivariate pattern analysis of inter-network connectivity distinguishes between reappraisal and passive viewing of emotional scenes.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[16590] doi:10.1093/g3journal/jkaf086 [paper, repository]

Neurons and molecules involved in noxious light sensation in Caenorhabditis elegans.

Journal: G3 (Bethesda, Md.)

Authors' code: micro-manager/mmcoreanddevices (no license), micro-manager.org (no license), Zenodo 13958554 (CC-BY-4.0)

Status: code verified, 1,681 files readable, 1 match

[16591] doi:10.1093/gerona/glae303 [paper, repository]

Nicotinamide Prevents the Plasticity Impairments and the Cognitive Dysfunction Caused by Bone Fracture in Older Mice.

Journal: The journals of gerontology. Series A, Biological sciences and medical sciences

Authors' code: embl-cba/microglia-morphometry (no license)

Status: code verified, 45 files readable, 1 match

[16592] doi:10.1093/ijnp/pyaf036 [paper, data]

Acute inflammation induced by the Escherichia coli lipopolysaccharide considerably increases the systemic and brain exposure of olanzapine after oral administration in mice.

Journal: The international journal of neuropsychopharmacology

Status: data only, 2 datasets cited

[16593] doi:10.1093/nar/gkaf534 [paper, data]

Landscape of A-I RNA editing in mouse, pig, macaque, and human brains.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[16594] doi:10.1093/nar/gkaf600 [paper, repository]

Elucidating brain transport pathways and cell type-dependent gene silencing of a durable lipid-siRNA conjugate administered into cerebrospinal fluid.

Journal: Nucleic acids research

Authors' code: singlecell.broadinstitute.org/single_cell/study (no license), Zenodo 15257645 (CC0-1.0), andrewkjar/lipid-sirna_scrnaseq (CC0-1.0)

Status: code verified, 8 files readable

[16595] doi:10.1093/neuonc/noaf008 [paper, data]

Disease stage-specific role of the mitochondrial pyruvate carrier suppresses differentiation in temozolomide and radiation-treated glioblastoma.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[16596] doi:10.1093/neuonc/noaf017 [paper, repository]

Genetic ancestry superpopulations show distinct prevalence and outcomes across pediatric central nervous system tumors from the Pediatric Brain Tumor Atlas and Pediatric Neuro-Oncology Consortium.

Journal: Neuro-oncology

Authors' code: rokitalab/pbta-genetic-ancestry (BSD-2-Clause)

Status: code verified, 35 files readable, 15 matches

[16597] doi:10.1093/scan/nsae079 [paper, data]

Neural bases of social facilitation and inhibition: how peer presence affects elementary eye movements.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[16598] doi:10.1093/scan/nsaf044 [paper, repository]

Are older adults more deceived by false advertising? Evidence from intra- and inter-brain connectivity in the prefrontal cortex during face-to-face deceptive sales.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF tk32p (no license), aspredicted.org/5qk3-nqnb.pdf (no license)

Status: code verified

[16599] doi:10.1101/2025.05.28.656653 [paper, repository]

Neural Spectral Prediction for Structure Elucidation with Tandem Mass Spectrometry

Journal: bioRxiv (preprint)

Authors' code: coleygroup/ms-pred (MIT), rogerwwww/ms-data-parser (no license)

Status: code verified, 295 files readable, 12 matches

[16600] doi:10.1111/cdev.14258 [paper]

EEG N1 Specialization to Print in Chinese Primary School Students: Developmental Trajectories, Longitudinal Changes, and Individual Differences.

Journal: Child development

Status: code on request

[16601] doi:10.1111/cns.70425 [paper]

CXCL10<sup>high</sup>TNFα<sup>high</sup>Ki67<sup>+</sup> Microglia Recruit and Activate CD8<sup>+</sup> T Cells in the Brainstem During Experimental Cerebral Malaria.

Journal: CNS neuroscience & therapeutics

Status: data only

[16602] doi:10.1111/cns.70428 [paper, repository]

Network Topography Alterations in Alzheimer's Disease: Insights From Motif Changes via Multisite Datasets (N = 3262).

Journal: CNS neuroscience & therapeutics

Authors' code: YongLiuLab (no license)

Status: code verified

[16603] doi:10.1111/ejn.70166 [paper, data]

EEG Correlates of Auditory Short-Term Memory and Dissimilarity Perception in Young and Older Adults.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[16604] doi:10.1111/ejn.70168 [paper, data]

Paraventricular Nucleus of the Thalamus Neurons That Project to the Nucleus Accumbens Show Enhanced c-Fos Expression During Early-Stage Cue-Reward Associative Learning in Male Rats.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[16605] doi:10.1111/ene.70241 [paper, data]

Peripherin: A Novel Early Diagnostic and Prognostic Plasmatic Biomarker in Amyotrophic Lateral Sclerosis.

Journal: European journal of neurology

Status: data only, 1 dataset cited

[16606] doi:10.1111/gbb.70029 [paper, repository]

Differing Genetics of Saline and Cocaine Self-Administration in the Hybrid Mouse Diversity Panel.

Journal: Genes, brain, and behavior

Authors' code: figshare 27958836 (CC-BY-4.0)

Status: code verified

[16607] doi:10.1111/jcmm.70668 [paper]

Construction of a Prognostic Model Using RNA Processing Factor Genes and the Key Role of NSUN6 in Glioma Outcomes.

Journal: Journal of cellular and molecular medicine

Status: data only

[16608] doi:10.1111/jnc.70110 [paper, repository]

Multi-Omic Analysis of Glutamate Excitotoxicity in Primary Neuronal Cultures.

Journal: Journal of neurochemistry

Authors' code: CogDisResLab/scheiffer-glutamate (no license), CogDisResLab/Kinograte (other), willgryan/PAVER (GPL-3.0)

Status: code verified, 138 files readable, 9 matches

[16609] doi:10.1111/jnc.70125 [paper, data]

Low-Glucose Culture Conditions Bias Neuronal Energetics Towards Oxidative Phosphorylation.

Journal: Journal of neurochemistry

Status: data only, 1 dataset cited

[16610] doi:10.1111/nan.70022 [paper, repository]

Lecanemab Binds to Transgenic Mouse Model-Derived Amyloid-β Fibril Structures Resembling Alzheimer's Disease Type I, Type II and Arctic Folds.

Journal: Neuropathology and applied neurobiology

Authors' code: sim-som/filament_particle_co_localization (no license)

Status: code verified, 2 files readable, 4 matches

[16611] doi:10.1111/psyp.70073 [paper, repository]

Oscillatory and Aperiodic Contributions to EEG Event-Related Time-Frequency Metrics During Cognitive Control and Reinforcement Processing: A Registered Report.

Journal: Psychophysiology

Authors' code: erawls-neuro/NeuroFreq_public (GPL-3.0), OSF 6mwyu (no license)

Status: code verified, 118 files readable, 8 matches

[16612] doi:10.1111/psyp.70082 [paper, data]

Semantic Processing of Arabic Numbers Across Tasks.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[16613] doi:10.1111/psyp.70083 [paper, data]

Wait for It: Defensive Reactivity and Individual Differences in Contrast Avoidance in the NPU-Reward Task.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[16614] doi:10.1111/psyp.70087 [paper]

Relationships Between Spontaneous Alpha Oscillation and Brain Response Amid the Complexity of Brain Adaptation and Spectral Signal Composition.

Journal: Psychophysiology

Status: code on request

[16615] doi:10.1111/psyp.70088 [paper]

Brain and Behavior in Persuasion: The Role of Affective-Cognitive Matching.

Journal: Psychophysiology

Status: code on request

[16616] doi:10.1111/psyp.70090 [paper, data]

Assessing Motor Cortical Activity: How Repetitions Impact Motor Execution and Imagery Analysis.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[16617] doi:10.1111/psyp.70093 [paper, data]

Modeling Emotional Arousal With Turbulence Measured by EEG.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[16618] doi:10.1111/psyp.70097 [paper, data]

Predicted Sensory Modality Determines the Timing and Topographies of Omitted Stimulus Potentials.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[16619] doi:10.1117/1.nph.12.s2.s22803 [paper, data]

Brief disruptions in capillary flow result in rapid onset of hypoxia.

Journal: Neurophotonics

Status: data only, 1 dataset cited

[16620] doi:10.1117/1.nph.12.s2.s22804 [paper]

Arterial-wall origin and transient dynamics of flow- and vaso-motion activities in the awake mouse brain revealed by laser speckle contrast imaging.

Journal: Neurophotonics

Status: code on request

[16621] doi:10.1117/1.nph.12.s2.s22807 [paper]

Two-point calibration protocol for the Förster Resonance Energy Transfer indicator Pyronic in neurons.

Journal: Neurophotonics

Status: code on request

[16622] doi:10.1167/iovs.66.6.77 [paper]

Maraviroc Prevents Optic Nerve Injury-Induced Retinal Ganglion Cell Apoptosis by Modulating the CCL5/CCR5/CTSS Axis.

Journal: Investigative ophthalmology & visual science

Status: data only

[16623] doi:10.1167/jov.25.7.4 [paper, repository]

How forward remapping predicts peri-saccadic biphasic mislocalization.

Journal: Journal of vision

Authors' code: m2b3/jov-2025-forward-remapping-mislocalization-code (no license)

Status: code verified, 59 files readable, 9 matches

[16624] doi:10.1182/bloodadvances.2024015000 [paper, data]

AhR activation mitigates graft-versus-host disease of the central nervous system by reducing microglial NF-κB signaling.

Journal: Blood advances

Status: data only, 1 dataset cited

[16625] doi:10.1210/clinem/dgae679 [paper, repository]

Association of Maternal Thyroglobulin With Gestational Thyroid Function and Offspring IQ and Brain Morphology.

Journal: The Journal of clinical endocrinology and metabolism

Authors' code: figshare 27014776 (CC-BY-4.0)

Status: empty repository

[16626] doi:10.25259/ijmr_382_2024 [paper, data]

IL-32-mediated caspase-43 induction: Shaping macrophage differentiation & immunomodulation in glioblastoma multiforme.

Journal: The Indian journal of medical research

Status: data only, 1 dataset cited

Saturday, 31 May 2025 (12 papers)

[16627] doi:10.1007/s00429-025-02942-4 [paper, data]

Altered white matter architecture in patients with isolated congenital anosmia.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[16628] doi:10.1016/j.xpro.2025.103858 [paper, repository]

Protocol for identifying genomic binding sites of mitotic bookmarkers in Drosophila neural stem cells and cultured mammalian cells.

Journal: STAR protocols

Authors' code: arq5x/bedtools2 (MIT), YuLab-SMU/ChIPseeker (no license), deeptools/deepTools (MIT), nboley/idr (GPL-2.0)

Status: code verified, 588 files readable, 3 matches

[16629] doi:10.1038/s41467-025-59856-2 [paper, data]

Single-nucleus and spatial signatures of the brainstem in normal brain and mild traumatic brain injury in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[16630] doi:10.1038/s41467-025-60402-3 [paper, data]

Endolysosomal processing of neuron-derived signaling lipids regulates autophagy and lipid droplet degradation in astrocytes.

Journal: Nature communications

Status: data only, 2 datasets cited

[16631] doi:10.1101/2025.05.28.656642 [paper, repository]

Multilayer MEG source modelling enables depth-resolved laminar inference in humans

Journal: bioRxiv (preprint)

Authors' code: danclab/spm (GPL-2.0), danclab/multilaminar_sim (no license), danclab/laminar_motor_erf (GPL-3.0), danclab/auditory_laminar (no license), cophyteam/laminar_visual_erf (GPL-3.0)

Status: code verified, 2,066 files readable, 11 matches

[16632] doi:10.1113/jp288504 [paper, repository]

Non-homogeneous distribution of inhibitory inputs among motor units in response to nociceptive stimulation at moderate contraction intensity.

Journal: The Journal of physiology

Authors' code: FrancoisDernoncourt/Pain_inhibition_simulation (MIT)

Status: code verified, 4 files readable, 6 matches

[16633] doi:10.1186/s12974-025-03471-x [paper, data]

Temporally resolved single-cell RNA sequencing reveals protective and pathological responses during herpes simplex virus CNS infection.

Journal: Journal of neuroinflammation

Status: data only, 4 datasets cited

[16634] doi:10.1186/s13024-025-00853-w [paper, data]

Early transcriptional and cellular abnormalities in choroid plexus of a mouse model of Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: code on request, 1 dataset cited

[16635] doi:10.1186/s13195-025-01765-z [paper, repository]

Digital twins and non-invasive recordings enable early diagnosis of Alzheimer's disease.

Journal: Alzheimer's research & therapy

Authors' code: LoreAma/Code_AD_simulations (GPL-2.0)

Status: code verified, 5 files readable, 2 matches

[16636] doi:10.1186/s13195-025-01773-z [paper, repository]

Deep-learning based multi-modal models for brain age, cognition and amyloid pathology prediction.

Journal: Alzheimer's research & therapy

Authors' code: ChenxiWang98/BrainMRI (no license)

Status: code verified, 11 files readable, 3 matches

[16637] doi:10.3390/brainsci15060592 [paper, repository]

Brain Structural Correlates of EEG Network Hyperexcitability, Symptom Severity, Attention, and Memory in Borderline Personality Disorder.

Journal: Brain sciences

Authors' code: berndf/avg_q (GPL-3.0)

Status: code verified, 494 files readable

[16638] doi:10.3390/e27060589 [paper, data]

Information-Theoretical Analysis of a Transformer-Based Generative AI Model.

Journal: Entropy (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 30 May 2025 (51 papers)

[16639] doi:10.1007/s00701-025-06566-9 [paper, repository]

Paroxysmal sympathetic hyperactivity risk modeling based on transients in time series describing the autonomic nervous system and cerebral hemodynamics.

Journal: Acta neurochirurgica

Authors' code: AUTOMATIC-BRAIN-ANS/PSH_Probability (MIT)

Status: code verified, 11 files readable, 4 matches

[16640] doi:10.1016/j.csbj.2025.05.052 [paper, repository]

Evolution is in the details: Regulatory differences in modern human and Neanderthal.

Journal: Computational and structural biotechnology journal

Authors' code: thirtysix/TFBS_footprinting_manuscript (MIT)

Status: code verified, 13 files readable, 12 matches

[16641] doi:10.1016/j.isci.2025.112792 [paper]

Predation by nematode-trapping fungus triggers mechanosensory-dependent quiescence in <i>Caenorhabditis elegans</i>.

Journal: iScience

Status: code on request

[16642] doi:10.1016/j.isci.2025.112793 [paper, repository]

Alzheimer's disease brain-derived tau extracts show differential processing and transcriptional effects in human astrocytes.

Journal: iScience

Authors' code: visiopharm.com/research-pathology-image-analysis-software (no license), proteomecentral.proteomexchange.org (no license)

Status: code verified

[16643] doi:10.1016/j.isci.2025.112797 [paper, data]

Angiotensin AT<sub>1</sub>R expressing cells within the ventral hypothalamus modulate integrative control of cardiometabolic functions.

Journal: iScience

Status: code on request, 1 dataset cited

[16644] doi:10.1016/j.isci.2025.112798 [paper, repository]

Neural encoding of linguistic features during natural sentence reading.

Journal: iScience

Authors' code: naplab/naplib-python (MIT)

Status: code verified, 122 files readable, 7 matches

[16645] doi:10.1016/j.xcrm.2025.102155 [paper]

Ultrabright ratiometric Raman-guided epilepsy surgery by intraoperatively visualizing proinflammatory microglia.

Journal: Cell reports. Medicine

Status: code on request

[16646] doi:10.1021/acschemneuro.5c00071 [paper, repository]

Microinvasive Probes for Monitoring Electrical and Chemical Neural Activity in Nonhuman Primates.

Journal: ACS chemical neuroscience

Authors' code: Zenodo 10955583 (CC-BY-4.0), Zenodo 10397773 (CC-BY-4.0), schwerdtlab/extractfscvspikes (no license)

Status: code verified, 76 files readable, 1 match

[16647] doi:10.1038/s41467-025-59039-z [paper, repository]

Pseudo-linear summation explains neural geometry of multi-finger movements in human premotor cortex.

Journal: Nature communications

Authors' code: figshare 28396166 (CC-BY-4.0)

Status: code verified

[16648] doi:10.1038/s41467-025-60194-6 [paper, repository]

Human endothelial cells promote a human neural stem cell type B phenotype via Notch signaling.

Journal: Nature communications

Authors' code: bgutie1/Nature-Communications-2025 (no license)

Status: code verified, 8 files readable, 12 matches

[16649] doi:10.1038/s41467-025-60338-8 [paper, repository]

Transcriptomic insights into fate choice of pallial versus subpallial GABAergic neurons.

Journal: Nature communications

Authors' code: saketkc/pySCTransform (GPL-3.0), YiqunW/NMF (no license)

Status: code verified, 35 files readable, 6 matches

[16650] doi:10.1038/s41467-025-60357-5 [paper, data]

Mapping grey and white matter activity in the human brain with isotropic ADC-fMRI.

Journal: Nature communications

Status: data only, 2 datasets cited

[16651] doi:10.1038/s41598-025-02583-x [paper]

A highly sensitive quantitative method of polysialic acid reveals its unique changes in brain aging and neuropsychiatric disorders.

Journal: Scientific reports

Status: data only

[16652] doi:10.1038/s41598-025-04793-9 [paper, data]

Latent class growth analysis of dynamic PaCo<sub>2</sub> patterns and clinical outcomes in acute brain injury.

Journal: Scientific reports

Status: data only, 1 dataset cited

[16653] doi:10.1038/s42003-025-08198-2 [paper, repository]

Leveraging multivariate information for community detection in functional brain networks.

Journal: Communications biology

Authors' code: mariagraziap/comm_detection_via_redundancy_optimization (BSD-3-Clause)

Status: code verified, 15 files readable, 1 match

[16654] doi:10.1038/s42003-025-08262-x [paper, repository]

Loss of UBE3A impacts both neuronal and non-neuronal cells in human cerebral organoids.

Journal: Communications biology

Authors' code: keung-lab/Estridge-Yagci-CommBio (no license)

Status: code verified, 3 files readable, 4 matches

[16655] doi:10.1073/pnas.2416387122 [paper, data]

Task difficulty modulates the effect of mind wandering on phase dynamics.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[16656] doi:10.1073/pnas.2504775122 [paper, repository]

Modular arrangement of synaptic and intrinsic homeostatic plasticity within visual cortical circuits.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: turrigianoCodeSpace/WeiWenManuscript2024 (no license)

Status: code verified, 34 files readable, 4 matches

[16657] doi:10.1080/19490976.2025.2508432 [paper]

Human microbiota influence the immune cell composition and gene expression in the tumor environment of a murine model of glioma.

Journal: Gut microbes

Status: code on request

[16658] doi:10.1093/beheco/araf048 [paper, repository]

Cognitive processes are robust to early environmental conditions in two lizard species.

Journal: Behavioral ecology : official journal of the International Society for Behavioral Ecology

Authors' code: Pablo-Recio/CORT_Temp_learning (no license)

Status: code verified, 6 files readable, 12 matches

[16659] doi:10.1093/beheco/araf061 [paper, data]

Too hot to reason? Experimental heatwaves affect cognitive traits in male guppies.

Journal: Behavioral ecology : official journal of the International Society for Behavioral Ecology

Status: data only, 1 dataset cited

[16660] doi:10.1093/braincomms/fcaf210 [paper, repository]

Brain MRI signatures across sex and CSF Alzheimer's disease biomarkers.

Journal: Brain communications

Authors' code: mindds/brain-csf-mri (no license)

Status: code verified, 2 files readable, 5 matches

[16661] doi:10.1126/sciadv.adp9707 [paper, data]

Association of human-specific expanded short tandem repeats with neuron-specific regulatory features.

Journal: Science advances

Status: data only, 1 dataset cited

[16662] doi:10.1126/sciadv.adq9893 [paper, repository]

Hybrid neural networks in the mushroom body drive olfactory preference in <i>Drosophila</i>.

Journal: Science advances

Authors' code: doi:10.5061/dryad.jh9w0vtnc (no license), cluster159/-Hybrid-Neural-Networks-in-the-Mushroom-Body-Drive-Olfactory-Preference-in-Drosophila (no license)

Status: code verified, 13 files readable, 13 matches

[16663] doi:10.1126/sciadv.adt7176 [paper, data]

Proteomic signatures of corona and herpes viral antibodies identify IGDCC4 as a mediator of neurodegeneration.

Journal: Science advances

Status: data only, 2 datasets cited

[16664] doi:10.1126/sciadv.adu9800 [paper, repository]

Local inhibitory circuits mediate cortical reactivations and memory consolidation.

Journal: Science advances

Authors' code: doi:10.25493/6b00-3n8 (no license)

Status: code verified

[16665] doi:10.1128/msphere.00216-25 [paper, data]

Defining neuronal responses to the neurotropic parasite <i>Toxoplasma gondii</i>.

Journal: mSphere

Status: data only, 1 dataset cited

[16666] doi:10.1128/msystems.01601-24 [paper, data]

Young gut microbiota transplantation improves the metabolic health of old mice.

Journal: mSystems

Status: data only, 1 dataset cited

[16667] doi:10.1159/000546602 [paper, data]

Safety Profile of Lithium: A Disproportionality Analysis Using the FDA Adverse Event Reporting System.

Journal: Neuropsychobiology

Status: data only, 1 dataset cited

[16668] doi:10.1159/000546675 [paper, data]

Cerebral Saturation and Fractional Tissue Oxygen Extraction Are Associated with Anterior Cerebral Artery Doppler Parameters in Neonates with Congenital Heart Defects.

Journal: Neonatology

Status: data only, 1 dataset cited

[16669] doi:10.1162/imag.a.15 [paper, repository]

Resting state fMRI-based temporal coherence mapping.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: zewangnew/TCM-CTCM (no license), zewangnew/ICLtbx (Apache-2.0)

Status: code verified, 4 files readable

[16670] doi:10.1162/imag.a.22 [paper, repository]

Optimal configuration of on-scalp OPMs with fixed channel counts.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: schoffelen/opm_simulations (no license)

Status: code verified, 70 files readable, 12 matches

[16671] doi:10.1162/imag.a.3 [paper, repository]

WhiFuN: A toolbox to map the white matter functional networks of the human brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Brain-Connectivity-Lab/WhiFuN (GPL-3.0)

Status: code verified, 220 files readable, 40 matches

[16672] doi:10.1162/imag.a.6 [paper, repository]

Evaluating lesion-specific preprocessing pipelines for rs-fMRI in stroke patients: Impact on functional connectivity and behavioral prediction.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: alixlam/fmristroke (Apache-2.0)

Status: code verified, 77 files readable, 8 matches

[16673] doi:10.1186/s12916-025-04141-8 [paper, data]

The regulatory variant rs1950834 confers the risk of depressive disorder by reducing LRFN5 expression.

Journal: BMC medicine

Status: data only, 1 dataset cited

[16674] doi:10.1186/s12987-025-00650-z [paper, data]

Proteome profile differences among human, monkey, and mouse brain microvessels and cultured brain microvascular endothelial cells.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[16675] doi:10.1186/s13195-025-01768-w [paper, repository]

Hippocampal subfields: volume, neuropathological vulnerability and cognitive decline in Alzheimer's and Parkinson's disease.

Journal: Alzheimer's research & therapy

Authors' code: NeuroScaleLab/pathological_quantification (no license)

Status: empty repository, 1 file readable

[16676] doi:10.1186/s41232-025-00383-4 [paper, data]

Unraveling the complex role of microglia in Alzheimer's disease: amyloid β metabolism and plaque formation.

Journal: Inflammation and regeneration

Status: data only, 1 dataset cited

[16677] doi:10.1371/journal.pone.0313549 [paper, data]

Kaizen: Decomposing cellular images with VQ-VAE.

Journal: PloS one

Status: data only, 1 dataset cited

[16678] doi:10.3389/fchem.2025.1574702 [paper, data]

Neuraminidase as a novel therapeutic management strategy for Alzheimer's disease: evidenced through molecular docking, molecular dynamic simulation and gene expression analysis.

Journal: Frontiers in chemistry

Status: data only, 1 dataset cited

[16679] doi:10.3389/fimmu.2025.1592343 [paper, data]

Single-cell transcriptome profiling reveals dynamic cell populations and immune infiltration in cerebral cavernous malformation.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[16680] doi:10.3389/fmed.2025.1593016 [paper, data]

Optimal Res-UNET architecture with deep supervision for tumor segmentation.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[16681] doi:10.3389/fnagi.2025.1571783 [paper, data]

Integrative single-cell and cell-free plasma RNA transcriptomics identifies biomarkers for early non-invasive AD screening.

Journal: Frontiers in aging neuroscience

Status: data only, 2 datasets cited

[16682] doi:10.3389/fneur.2025.1555586 [paper, data]

Construction of epilepsy diagnosis model based on cell senescence-related genes and its potential mechanism.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[16683] doi:10.3389/fnhum.2025.1607941 [paper, repository]

Topological signatures of brain dynamics: persistent homology reveals individuality and brain-behavior links.

Journal: Frontiers in human neuroscience

Authors' code: giotto-ai/giotto-tda (AGPL-3.0)

Status: code verified, 142 files readable, 3 matches

[16684] doi:10.3389/fnimg.2025.1573816 [paper, repository]

Benchmarking machine learning models in lesion-symptom mapping for predicting language outcomes in stroke survivors.

Journal: Frontiers in neuroimaging

Authors' code: neurolabusc/nii_preprocess (no license)

Status: code verified, 90 files readable, 10 matches

[16685] doi:10.3389/fnins.2025.1545885 [paper, data]

The change of MRI indexes of brain glymphatic function and sleep status before and after repeated transcranial magnetic stimulation in insomnia disorder patients.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[16686] doi:10.3389/fnins.2025.1551143 [paper, repository]

SpyKing-Privacy-preserving framework for Spiking Neural Networks.

Journal: Frontiers in neuroscience

Authors' code: farzadnikfam/SpyKing (MIT)

Status: code verified, 11 files readable, 2 matches

[16687] doi:10.3389/fphys.2025.1572854 [paper, data]

Fecal or bacterial transplantation in mice transfer environment-induced brain plasticity and associated behavioral changes.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[16688] doi:10.3389/frai.2025.1507922 [paper, data]

Early diagnosis of autism across developmental stages through scalable and interpretable ensemble model.

Journal: Frontiers in artificial intelligence

Status: data only, 2 datasets cited

[16689] doi:10.3390/diagnostics15111392 [paper, data]

A Hybrid Model of Feature Extraction and Dimensionality Reduction Using ViT, PCA, and Random Forest for Multi-Classification of Brain Cancer.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 4 datasets cited

Thursday, 29 May 2025 (36 papers)

[16690] doi:10.1002/mds.30251 [paper, repository]

A Convergent Pathway for Stimulation-Induced Dyskinesia Following Deep Brain Stimulation.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: netstim/leaddbs (GPL-3.0)

Status: code verified, 2,000 files readable, 6 matches

[16691] doi:10.1016/j.bbih.2025.101025 [paper, data]

Peer victimization in adolescence alters gene expression and cytokine profiles during transition to adulthood.

Journal: Brain, behavior, & immunity - health

Status: data only, 2 datasets cited

[16692] doi:10.1016/j.dcn.2025.101576 [paper, repository]

Statistical learning of orthography-semantics regularities: A developmental neurophysiological study.

Journal: Developmental cognitive neuroscience

Authors' code: OSF kapy4 (no license)

Status: code verified, 3 files readable, 1 match

[16693] doi:10.1016/j.ebiom.2025.105753 [paper, repository]

Distinct brain atrophy progression subtypes underlie phenoconversion in isolated REM sleep behaviour disorder.

Journal: EBioMedicine

Authors' code: ucl-pond (no license)

Status: code verified

[16694] doi:10.1016/j.ebiom.2025.105769 [paper, repository]

Impact of Y chromosome loss on the risk of Parkinson's disease and progression.

Journal: EBioMedicine

Authors' code: sixguns1984/PD.mLOY (no license)

Status: code verified, 5 files readable, 7 matches

[16695] doi:10.1016/j.envint.2025.109561 [paper, repository]

Fine particulate matter air pollution and longitudinal gray matter development changes during early adolescence: variation by neighborhood disadvantage level.

Journal: Environment international

Authors' code: figshare 29202749 (CC-BY-4.0)

Status: code verified, 1 file readable, 1 match

[16696] doi:10.1016/j.isci.2025.112782 [paper, repository]

Neural mechanisms of confidence propagation in hierarchical partially observable decision-making.

Journal: iScience

Authors' code: OSF wcfu7 (no license)

Status: code verified, 16 files readable, 3 matches

[16697] doi:10.1016/j.jbc.2025.110313 [paper, repository]

Map of the neuronal O-glycoproteome reveals driver functions in the regulated secretory pathway.

Journal: The Journal of biological chemistry

Authors' code: pwilmart/IRS_normalization (MIT)

Status: code verified, 16 files readable, 3 matches

[16698] doi:10.1016/j.jlr.2025.100832 [paper, data]

Deep sphingolipidomic and metabolomic analyses of ceramide synthase 2 null mice reveal complex pathway-specific effects.

Journal: Journal of lipid research

Status: data only, 1 dataset cited

[16699] doi:10.1038/s41540-025-00539-5 [paper, repository]

Translational disease modeling of peripheral blood identifies type 2 diabetes biomarkers predictive of Alzheimer's disease.

Journal: NPJ systems biology and applications

Authors' code: Brubaker-Lab/CrossDisease-TransCompR-T2D-AD-Human (CC0-1.0)

Status: code verified, 15 files readable, 24 matches

[16700] doi:10.1038/s41593-025-01962-x [paper, repository]

The transcriptomes, connections and development of submucosal neuron classes in the mouse small intestine.

Journal: Nature neuroscience

Authors' code: UMarklundLab/SubmucosaENS (MIT), Linden-Laboratory/Mucosal-Deformation (MIT)

Status: code verified, 7 files readable, 5 matches

[16701] doi:10.1038/s41594-025-01575-9 [paper, data]

Distinct tau filament folds in human MAPT mutants P301L and P301T.

Journal: Nature structural & molecular biology

Status: data only, 1 dataset cited

[16702] doi:10.1038/s41597-025-05213-3 [paper, repository]

Improving data sharing and knowledge transfer via the Neuroelectrophysiology Analysis Ontology (NEAO).

Journal: Scientific data

Authors' code: INM-6/neuroephys_analysis_ontology (CC-BY-4.0), INM-6/alpaca (BSD-3-Clause), doi:10.12751/incf.ni2018.0019 (no license), Zenodo 14288030 (BSD-3-Clause), Zenodo 10075775 (BSD-3-Clause), Zenodo 10277861 (BSD-3-Clause)

Status: code verified, 242 files readable, 32 matches

[16703] doi:10.1038/s41598-025-01106-y [paper, repository]

Decoding dynamic brain networks in Parkinson's disease with temporal attention.

Journal: Scientific reports

Authors' code: salilp42/IMPACT (MIT)

Status: code verified, 15 files readable, 10 matches

[16704] doi:10.1038/s41598-025-01612-z [paper, repository]

The balance between integration and segregation drives network dynamics maximizing multistability and metastability.

Journal: Scientific reports

Authors' code: vandal-uv/Integration-Segregation (no license)

Status: code verified, 2 files readable

[16705] doi:10.1038/s41598-025-02790-6 [paper, repository]

Predicting artificial neural network representations to learn recognition model for music identification from brain recordings.

Journal: Scientific reports

Authors' code: JURIUENO11/PredANN (CC-BY-NC-SA-4.0)

Status: code verified, 33 files readable, 8 matches

[16706] doi:10.1038/s41598-025-03068-7 [paper, data]

Association between post-stroke cognitive impairment and gut microbiota in patients with ischemic stroke.

Journal: Scientific reports

Status: data only, 1 dataset cited

[16707] doi:10.1038/s41598-025-03283-2 [paper, data]

Changes in the distribution of elements in the liver and various brain regions in suicides from southeastern Poland.

Journal: Scientific reports

Status: data only, 1 dataset cited

[16708] doi:10.1038/s41598-025-03567-7 [paper, data]

Multimodal fusion transformer network for multispectral pedestrian detection in low-light condition.

Journal: Scientific reports

Status: data only, 1 dataset cited

[16709] doi:10.1038/s41598-025-03877-w [paper, data]

Development of a 3D ex vivo model of brain-leukemia interaction to study the role of activin A in the central nervous system microenvironment.

Journal: Scientific reports

Status: data only, 1 dataset cited

[16710] doi:10.1038/s41598-025-04010-7 [paper, data]

Associations between physical activity and brain structure in a large community cohort.

Journal: Scientific reports

Status: data only, 1 dataset cited

[16711] doi:10.1038/s41746-025-01704-0 [paper]

Predicting abnormal fetal growth using deep learning.

Journal: NPJ digital medicine

Status: code on request

[16712] doi:10.1038/s42003-025-08154-0 [paper, data]

Monoacylglycerol acyltransferase maintains ionotropic receptor expression for cool temperature sensing and avoidance in Drosophila.

Journal: Communications biology

Status: data only, 1 dataset cited

[16713] doi:10.1101/2025.05.28.656584 [paper, repository]

Memory by a thousand rules: Automated discovery of multi-type plasticity rules reveals variety & degeneracy at the heart of learning

Journal: bioRxiv (preprint)

Authors' code: VogelsLab/dataSBI (no license)

Status: code verified, 58 files readable, 7 matches

[16714] doi:10.1126/science.adt3971 [paper, repository]

Conserved brain-wide emergence of emotional response from sensory experience in humans and mice.

Journal: Science (New York, N.Y.)

Authors' code: jenniferColonell/ecephys_spike_sorting (BSD-2-Clause)

Status: code verified, 123 files readable, 2 matches

[16715] doi:10.1162/imag.a.17 [paper, repository]

Interhemispheric integration in the neural face perception network: Does stimulus location matter?

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF t9ym6 (no license)

Status: empty repository

[16716] doi:10.1162/imag.a.9 [paper, repository]

Modeling dynamic inflow effects in fMRI to quantify cerebrospinal fluid flow.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: baarbod (no license)

Status: code verified

[16717] doi:10.1186/s10020-025-01272-9 [paper, data]

Androgens alleviate the depression-like phenotype in female mice by inhibiting AVPR1a in the hippocampal brain region.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 2 datasets cited

[16718] doi:10.1371/journal.pone.0310917 [paper, repository]

Vibrotactile auricular vagus nerve stimulation alters limbic system connectivity in humans: A pilot study.

Journal: PloS one

Authors' code: neurotechcenter/vibrotactile_taVNS_coherence (no license), Zenodo 7486842 (MIT), neurotechcenter/vera (MIT)

Status: code verified, 1,000 files readable, 2 matches

[16719] doi:10.1371/journal.pone.0324459 [paper, data]

Sleep phenotyping in a rat model of susceptibility to substance use disorders.

Journal: PloS one

Status: data only, 1 dataset cited

[16720] doi:10.1523/eneuro.0107-25.2025 [paper, data]

Parallel Gene Expression Changes in Ventral Midbrain Dopamine and GABA Neurons during Normal Aging.

Journal: eNeuro

Status: data only, 1 dataset cited

[16721] doi:10.1523/eneuro.0403-24.2025 [paper, repository]

High-Order Information Analysis of Epileptogenesis in the Pilocarpine Rat Model of Temporal Lobe Epilepsy.

Journal: eNeuro

Authors' code: danielemarinazzo/HOI (MIT), renzocom/hyperplot (no license), mirjebreili/tle (no license)

Status: code verified, 35 files readable, 5 matches

[16722] doi:10.3389/fnut.2025.1559325 [paper, repository]

Obesity-related alterations of intrinsic functional architecture: a resting-state fMRI study based on the human connectome project.

Journal: Frontiers in nutrition

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable

[16723] doi:10.3389/fonc.2025.1587856 [paper, data]

Molecular targets and mechanisms of cortex mori for lung cancer treatment: a network pharmacology study, molecular docking and <i>in vitro</i> and <i>in vivo</i> experimental validation.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[16724] doi:10.3390/genes16060665 [paper, data]

The Complex Role of the miR-17-92 Cluster in Stroke: Mechanistic Insights and Biomarker Potential.

Journal: Genes

Status: data only, 1 dataset cited

[16725] doi:10.7554/elife.99538 [paper, repository]

Menopausal hormone therapy and the female brain: Leveraging neuroimaging and prescription registry data from the UK Biobank cohort.

Journal: eLife

Authors' code: dmlc/xgboost (Apache-2.0), melisanaturk/dementia_risk_score (Apache-2.0)

Status: code verified, 1,135 files readable, 4 matches

Wednesday, 28 May 2025 (68 papers)

[16726] doi:10.1002/advs.202413052 [paper, repository]

Key Connectomes and Synaptic-Compartment-Specific Risk Genes Drive Pathological α-Synuclein Spreading.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: ejcorn/connectome_diffusion (MIT), Yuanxi-Li/PFF_Progression_Model (Apache-2.0)

Status: code verified, 53 files readable, 8 matches

[16727] doi:10.1002/advs.202504455 [paper, repository]

Multiscale Organization of Neural Networks in a 3D Bioprinted Matrix.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: ChimesZ/neuMatrix (MIT)

Status: code verified, 5 files readable, 1 match

[16728] doi:10.1002/mrm.30527 [paper, repository]

SNR-efficient whole-brain pseudo-continuous arterial spin labeling perfusion imaging at 7 T.

Journal: Magnetic resonance in medicine

Authors' code: mrsrl.stanford.edu/~brian/mintverse (no license), mrsrl.stanford.edu/∼brian/mintverse (no license), Zenodo 15282660 (CC-BY-4.0)

Status: code verified

[16729] doi:10.1007/s00221-025-07049-0 [paper, repository]

Side-specific implicit training of attentional disengagement and reorienting.

Journal: Experimental brain research

Authors' code: OSF brzpg (no license)

Status: code verified, 1 file readable, 3 matches

[16730] doi:10.1007/s43440-025-00735-4 [paper, data]

Naltrexone dose-selectively modulates goal-directed behavior and the hypothalamic proteome in rats.

Journal: Pharmacological reports : PR

Status: data only, 1 dataset cited

[16731] doi:10.1016/j.bpsgos.2025.100541 [paper, repository]

Predicting Mental and Neurological Illnesses Based on Cerebellar Normative Features.

Journal: Biological psychiatry global open science

Authors' code: surfer.nmr.mgh.harvard.edu (no license), fsl.fmrib.ox.ac.uk/fsl/fslwiki (no license), shuohan/acapulco (no license), jdiedrichsen/suit (no license), amarquand/PCNtoolkit (GPL-3.0), MHM-lab (no license)

Status: code verified, 198 files readable, 6 matches

[16732] doi:10.1016/j.crmeth.2025.101055 [paper, repository]

Quiescent horizontal basal stem cells act as a niche for olfactory neurogenesis in a mouse 3D organoid model.

Journal: Cell reports methods

Authors' code: scverse/scanpy (BSD-3-Clause), swolock/scrublet (MIT), saezlab/liana-py (BSD-3-Clause)

Status: code verified, 253 files readable, 2 matches

[16733] doi:10.1016/j.dib.2025.111704 [paper, data]

Dataset on quantitative behavioral and EEG of lateral cerebellar nucleus (LCN) electrical stimulation in PTZ-kindled rats.

Journal: Data in brief

Status: data only, 4 datasets cited

[16734] doi:10.1016/j.ebiom.2025.105780 [paper]

Paroxysmal cortical slowing linked to drug-resistant epilepsy.

Journal: EBioMedicine

Status: code on request

[16735] doi:10.1016/j.nbd.2025.106981 [paper, data]

Striatal cell-type-specific molecular signatures reveal potential therapeutic targets in a model of dystonia.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[16736] doi:10.1016/j.xcrm.2025.102151 [paper, repository]

Contrastive functional connectivity defines neurophysiology-informed symptom dimensions in major depression.

Journal: Cell reports. Medicine

Authors' code: momogasuki/contrastiveMDD (no license), abidlabs/contrastive (MIT)

Status: code verified, 26 files readable

[16737] doi:10.1021/acsomega.5c00934 [paper, data]

Synthetic Retinoids for the Modulation of Genomic and Nongenomic Processes in Neurodegenerative Diseases.

Journal: ACS omega

Status: data only, 2 datasets cited

[16738] doi:10.1038/s41392-025-02258-z [paper, data]

Neuron-targeted caveolin-1 overexpression attenuates cognitive loss and pathological transcriptome changes in symptomatic Alzheimer's disease models.

Journal: Signal transduction and targeted therapy

Status: data only, 1 dataset cited

[16739] doi:10.1038/s41467-025-60044-5 [paper, repository]

Basal ganglia deep brain stimulation restores cognitive flexibility and exploration-exploitation balance disrupted by NMDA-R antagonism.

Journal: Nature communications

Authors' code: codeocean:3920364 (no license)

Status: code found, still to be checked

[16740] doi:10.1038/s41467-025-60181-x [paper, repository]

Bioadhesive hydrogel-coupled and miniaturized ultrasound transducer system for long-term, wearable neuromodulation.

Journal: Nature communications

Authors' code: kevintang725/MiniUlTra-LSL (MIT), Zenodo 15258560 (CC-BY-4.0)

Status: code verified, 242 files readable, 2 matches

[16741] doi:10.1038/s41467-025-60228-z [paper, data]

Elevated nonhomologous end-joining by AATF enables efficient DNA damage repair and therapeutic resistance in glioblastoma.

Journal: Nature communications

Status: data only, 2 datasets cited

[16742] doi:10.1038/s41514-025-00234-z [paper]

Subcortical brain volumetric differences related to white matter lesion volume and cognition in healthy aging.

Journal: npj aging

Status: code on request

[16743] doi:10.1038/s41531-025-01002-2 [paper, repository]

Mapping striatal functional gradients and associated gene expression in Parkinson's disease with continuous cognitive impairment.

Journal: NPJ Parkinson's disease

Authors' code: MICA-MNI/BrainSpace (BSD-3-Clause), juryxy/JuSpace (no license)

Status: code verified, 150 files readable, 5 matches

[16744] doi:10.1038/s41586-025-09059-y [paper, repository]

EndoMAP.v1 charts the structural landscape of human early endosome complexes.

Journal: Nature

Authors' code: Zenodo 14679635 (CC-BY-4.0), Zenodo 14447604 (CC0-1.0), Zenodo 14632928 (CC-BY-4.0), harperlaboratory/EndoMAP (MIT), Zenodo 15109844 (CC-BY-4.0)

Status: code verified, 12 files readable, 9 matches

[16745] doi:10.1038/s41586-025-09066-z [paper, data]

Dynamic basal ganglia output signals license and suppress forelimb movements.

Journal: Nature

Status: data only, 1 dataset cited

[16746] doi:10.1038/s41593-025-01972-9 [paper, repository]

Choroid plexus apocrine secretion shapes CSF proteome during mouse brain development.

Journal: Nature neuroscience

Authors' code: Zenodo 10464093 (CC-BY-4.0), Zenodo 10464124 (CC-BY-4.0)

Status: code verified, 2 files readable, 6 matches

[16747] doi:10.1038/s41597-025-05222-2 [paper, repository]

Human brain local field potential recordings during a battery of multilingual cognitive and eye-tracking tasks.

Journal: Scientific data

Authors' code: msel-source/pymef (other), MaxvandenBoom/matmef (GPL-3.0), brainandmindlab/memory_encoding (no license), Zenodo 2590814 (other-open), Zenodo 4030570 (other-open), icrc-bme/pysigview (Apache-2.0), icrc-bme/epycom (Apache-2.0)

Status: code verified, 304 files readable

[16748] doi:10.1038/s41597-025-05245-9 [paper, repository]

An fMRI dataset for investigating language control and cognitive control in bilinguals.

Journal: Scientific data

Authors' code: GttNeuro/Guo-Lab_datapaper (no license), DVS-Lab/srndna-datapaper (no license)

Status: code verified, 92 files readable, 11 matches

[16749] doi:10.1038/s41598-025-03953-1 [paper, data]

Computational molecular characterization of a novel SLC20A2 variant associated with primary familial brain calcification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[16750] doi:10.1038/s42003-025-08177-7 [paper, repository]

White matter dysfunction in Alzheimer's disease is associated with disease-related transcriptomic signatures.

Journal: Communications biology

Authors' code: rmarkello/abagen (BSD-3-Clause), SarahMorgan/Morphometric_Similarity_SZ (MIT), Zenodo 15294200 (no license)

Status: code verified, 57 files readable, 2 matches

[16751] doi:10.1038/s43587-025-00876-4 [paper, data]

The geroprotectors trametinib and rapamycin combine additively to extend mouse healthspan and lifespan.

Journal: Nature aging

Status: data only, 1 dataset cited

[16752] doi:10.1038/s43588-025-00796-8 [paper, repository]

A computational approach to evaluate how molecular mechanisms impact large-scale brain activity.

Journal: Nature computational science

Authors' code: gitlab.ebrains.eu/kancourt/tvb-adex-showcase3-git (no license), mariasacha/paper_pipeline_hub (no license), thevirtualbrain.org/tvb/zwei (no license), Zenodo 15035287 (CC-BY-4.0)

Status: code verified, 78 files readable, 12 matches

[16753] doi:10.1073/pnas.2427257122 [paper, data]

Nanoimmunomodulation of the Aβ-STING feedback machinery in microglia for Alzheimer's disease treatment.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[16754] doi:10.1093/braincomms/fcaf204 [paper, repository]

Longitudinal neuromelanin changes in prodromal and early Parkinson's disease in humans and rat model.

Journal: Brain communications

Authors' code: jbperot/NIPARK (no license), Zenodo 14904521 (CC-BY-4.0)

Status: code verified, 4 files readable, 6 matches

[16755] doi:10.1093/braincomms/fcaf208 [paper, repository]

Multisite chronic pain: association with cognitive decline and post-mortem Alzheimer's biomarkers.

Journal: Brain communications

Authors' code: trbellucsd/ROSMAP_Pain_AD_Risk (no license), radc.rush.edu (no license)

Status: code verified

[16756] doi:10.1098/rsos.241977 [paper, repository]

A topological method of generating action potentials and electroencephalography oscillations in a surface network.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7759020 (no license)

Status: code found, still to be checked

[16757] doi:10.1098/rspb.2024.1724 [paper, repository]

Shorter-duration escapes driven by <i>Drosophila</i> giant interneurons promote survival during predation.

Journal: Proceedings. Biological sciences

Authors' code: Zenodo 15137407 (CC-BY-4.0), gmcard/chai_et_al_2025_procb (no license)

Status: code verified, 20 files readable, 3 matches

[16758] doi:10.1101/2025.05.24.655840 [paper, repository]

Modeling 2D Spatio-Tactile Population Receptive Fields of the Fingertip in Human Primary Somatosensory Cortex

Journal: bioRxiv (preprint)

Authors' code: Kriaese/manuscript-zoomprf (CC0-1.0), openneuro:ds006128 (no license), OSF 4drz6 (no license), OSF 2rgsm (no license)

Status: code verified, 224 files readable, 10 matches

[16759] doi:10.1101/2025.05.26.655710 [paper, repository]

Stable Individual Differences Dominate Adult Brain Volume Variation Until Later Life

Journal: bioRxiv (preprint)

Authors' code: EdvardGrodem/brain-trajectories (no license)

Status: code verified, 10 files readable, 2 matches

[16760] doi:10.1101/2025.05.28.25328476 [paper, repository]

Lifespan investigation of brain volumetric changes associated with substance use disorders

Journal: medRxiv (preprint)

Authors' code: LeonDLotter/CTdev (CC-BY-NC-SA-4.0), saigegit/SAIGE (GPL-3.0), xm1701/bcprs (no license), precimed/pleiofdr (GPL-3.0)

Status: code verified, 137 files readable, 7 matches

[16761] doi:10.1101/2025.05.28.656648 [paper, repository]

Dynamic Landscape Analysis of Cell Fate Decisions: Predictive Models of Neural Development From Single-Cell Data

Journal: bioRxiv (preprint)

Authors' code: Zenodo 15584010 (CC-BY-4.0), Zenodo 15584011 (CC-BY-4.0), Zenodo 21966125 (CC-BY-4.0)

Status: code verified

[16762] doi:10.1111/cobi.70047 [paper, repository]

Using online reports of seahorse seizures to track their illegal trade.

Journal: Conservation biology : the journal of the Society for Conservation Biology

Authors' code: figshare 23561625 (MIT)

Status: code verified, 2 files readable, 3 matches

[16763] doi:10.1126/sciadv.adq6477 [paper, repository]

Dynamic regulation of vesicle pools in a detailed spatial model of the complete synaptic vesicle cycle.

Journal: Science advances

Authors' code: modeldb:2018007 (no license)

Status: code found, still to be checked

[16764] doi:10.1126/sciadv.adr7571 [paper, repository]

Continuous-time digital twin with analog memristive neural ordinary differential equation solver.

Journal: Science advances

Authors' code: Zenodo 14536374 (MIT), chenhg99/nodes_digital_twin (no license)

Status: code verified, 32 files readable, 1 match

[16765] doi:10.1126/sciadv.adv3140 [paper, repository]

Neuronal potassium channel activity triggers initiation of mRNA translation through binding of translation regulators.

Journal: Science advances

Authors' code: Zenodo 14933585 (Apache-2.0), tjmalone/malone2025 (Apache-2.0)

Status: code verified, 54 files readable, 3 matches

[16766] doi:10.1162/imag.a.16 [paper]

Organization of distributed cortical connections underlying the processing of auditory information in dogs assessed by diffusion MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[16767] doi:10.1162/imag.a.18 [paper]

Brain-wide associations of reaction time variability in the ABCD study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[16768] doi:10.1162/imag.a.23 [paper]

Long COVID-related blood-brain barrier breakdown and microstructure in older adults are modified by sex and Alzheimer's disease genetic risk.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[16769] doi:10.1162/imag.a.4 [paper, repository]

Automated quality control of T1-weighted brain MRI scans for clinical research datasets: methods comparison and design of a quality prediction classifier.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: git.fmrib.ox.ac.uk/mcz502/qc-paper (no license)

Status: code verified

[16770] doi:10.1186/s12916-025-04125-8 [paper, repository]

Excessive iron accumulation in the striatum associated with addictive behaviors of medication-overuse headache: a prospective study.

Journal: BMC medicine

Authors' code: acostaj/QSMbox (BSD-3-Clause)

Status: code verified, 184 files readable, 6 matches

[16771] doi:10.1186/s12974-025-03464-w [paper, data]

Impaired membrane lipids in ischemic stroke: a key player in inflammation and thrombosis.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[16772] doi:10.1186/s13046-025-03411-w [paper, data]

Co-inhibition of Notch1 and ChK1 triggers genomic instability and melanoma cell death increasing the lifespan of mice bearing melanoma brain metastasis.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 1 dataset cited

[16773] doi:10.1186/s40478-025-02030-y [paper, repository]

Operationalizing postmortem pathology-MRI association studies in Alzheimer's disease and related disorders with MRI-guided histology sampling.

Journal: Acta neuropathologica communications

Authors' code: pyushkevich/brainmold (MIT), pyushkevich/histoannot (GPL-3.0), pyushkevich/c3d (GPL-3.0), pyushkevich/greedy (Apache-2.0), Pulkit-Khandelwal/purple-mri (no license)

Status: code verified, 508 files readable, 10 matches

[16774] doi:10.1371/journal.pcbi.1013115 [paper, repository]

RETINA: Reconstruction-based pre-trained enhanced TransUNet for electron microscopy segmentation on the CEM500K dataset.

Journal: PLoS computational biology

Authors' code: BaderLab/RETINA (MIT)

Status: code verified, 16 files readable

[16775] doi:10.1371/journal.pone.0320257 [paper, data]

Identification of biomarkers associated with inflammatory response in Parkinson's disease by bioinformatics and machine learning.

Journal: PloS one

Status: data only, 1 dataset cited

[16776] doi:10.1371/journal.pone.0323825 [paper, data]

Proliferative arrest induces neuronal differentiation and innate immune responses in normal and Creutzfeldt-Jakob Disease agent (CJ) infected rat septal neurons.

Journal: PloS one

Status: data only, 1 dataset cited

[16777] doi:10.1371/journal.pone.0324277 [paper, repository]

Intrinsic functional connectivity brain networks mediate effect of age on sociability.

Journal: PloS one

Authors' code: OSF vdjyb (no license)

Status: code verified, 1 file readable

[16778] doi:10.1507/endocrj.ej24-0723 [paper, data]

Effects of excessive iodine intake during the perinatal period on thyroid function and higher brain functions in mouse offspring.

Journal: Endocrine journal

Status: data only, 1 dataset cited

[16779] doi:10.1523/eneuro.0575-24.2025 [paper, repository]

Firing Activities of REM- and NREM-Preferring Neurons Are Differently Modulated by Fast Network Oscillations and Behavior in the Hippocampus, Prelimbic Cortex, and Amygdala.

Journal: eNeuro

Authors' code: HiroMiyawaki/Miyawaki2022_NatCommun (GPL-3.0), Zenodo 6069800 (other-open), buzsakilab/buzcode (GPL-3.0), satonisaku/Risa-Kajiya-2025 (no license)

Status: code verified, 2,417 files readable, 10 matches

[16780] doi:10.1523/eneuro.0581-24.2025 [paper, data]

Characterization of Transgenic Lines Labeling Reticulospinal Neurons in Larval Zebrafish.

Journal: eNeuro

Status: data only, 1 dataset cited

[16781] doi:10.1523/jneurosci.0044-25.2025 [paper, repository]

Single-Trial fMRI Decoding of 3D Motion with Stereoscopic and Perspective Cues.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: raniaezzo/DrawingROIs (no license)

Status: empty repository, 1 file readable

[16782] doi:10.1523/jneurosci.2187-24.2025 [paper, repository]

Differential Beta and Gamma Activity Modulation during Unimanual and Bimanual Motor Learning.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: data.mrc.ox.ac.uk (no license)

Status: code verified

[16783] doi:10.1523/jneurosci.2378-24.2025 [paper, data]

Decomposing Cognitive Processes in the mPFC during Self-Thinking.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[16784] doi:10.3390/bioengineering12060578 [paper, repository]

PathCare: Integrating Clinical Pathway Information to Enable Healthcare Prediction at the Neuron Level.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: fuxius/PathCare (no license), yhzhu99/pyehr (MIT)

Status: code verified, 115 files readable, 1 match

[16785] doi:10.3390/bioengineering12060583 [paper, repository]

A Hybrid Convolutional-Transformer Approach for Accurate Electroencephalography (EEG)-Based Parkinson's Disease Detection.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: yiamcb/CTESM (no license)

Status: code verified, 7 files readable, 6 matches

[16786] doi:10.3390/bs15060746 [paper, repository]

Brain White Matter Alterations in Young Adults with Childhood Emotional Neglect Experience.

Journal: Behavioral sciences (Basel, Switzerland)

Authors' code: pennbbl/qsiprep (BSD-3-Clause), yeatmanlab/afq (gnu)

Status: code verified, 359 files readable, 8 matches

[16787] doi:10.3390/cancers17111799 [paper, repository]

Identification of an Immune-Related Gene Signature for Prognostic Prediction in Glioblastoma: Insights from Integrated Bulk and Single-Cell RNA Sequencing.

Journal: Cancers

Authors' code: cielowq/Prognostic-Immune-Related-Gene-Signature-in-Glioblastoma (no license)

Status: code verified

[16788] doi:10.3390/s25113389 [paper, data]

Gate Control Mechanisms of Autoencoders for EEG Signal Reconstruction.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[16789] doi:10.3758/s13415-025-01303-2 [paper, repository]

Impaired reinforcement learning and coding of prediction errors in patients with cerebellar degeneration - a study with EEG and voxel-based morphometry.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF fgw8h (no license)

Status: code verified, 6 files readable, 8 matches

[16790] doi:10.3758/s13415-025-01304-1 [paper]

Making decisions immediately post-stress: Evidence for dorsolateral prefrontal cortex involvement with an fMRI study.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request

[16791] doi:10.7554/elife.102335 [paper, repository]

Criterion placement threatens the construct validity of neural measures of consciousness.

Journal: eLife

Authors' code: OSF ap23w (no license)

Status: code verified, 15 files readable, 3 matches

[16792] doi:10.7554/elife.104914 [paper, repository]

Quantification of the effect of hemodynamic occlusion in two-photon imaging of mouse cortex.

Journal: eLife

Authors' code: Zenodo 15198651 (CC-BY-4.0), Zenodo 12632129 (CC-BY-4.0)

Status: code verified

[16793] doi:10.7554/elife.88775 [paper, repository]

Endogenous oscillatory rhythms and interactive contingencies jointly influence infant attention during early infant-caregiver interaction.

Journal: eLife

Authors' code: Zenodo 14394764 (MIT), Zenodo 13347795 (CC-BY-4.0), Zenodo 14394763 (MIT), emilyangelamitchellphillips/gazehandcoding (MIT)

Status: code verified, 59 files readable, 7 matches

Tuesday, 27 May 2025 (49 papers, 7 on this page)

[16794] doi:10.1007/s00702-025-02947-7 [paper, repository]

The relationship of early life adversity and physiological synchrony within the therapeutic triad in horse-assisted therapy.

Journal: Journal of neural transmission (Vienna, Austria : 1996)

Authors' code: OSF 2w6ey (no license), OSF dws8c (no license)

Status: code verified, 2 files readable, 9 matches

[16795] doi:10.1007/s00787-025-02745-2 [paper]

Developmental differences in threat learning are associated with changes in frontal-central theta activity.

Journal: European child & adolescent psychiatry

Status: code on request

[16796] doi:10.1007/s42113-025-00248-6 [paper, repository]

Lévy Versus Wiener: Assessing the Effects of Model Misspecification on Diffusion Model Parameters.

Journal: Computational brain & behavior

Authors' code: HatoTuba/LFM_model-misspecification (no license)

Status: code verified, 20 files readable, 2 matches

[16797] doi:10.1016/j.bbih.2025.101024 [paper, data]

Relationship between blood-cerebrospinal fluid barrier integrity, cardiometabolic, and inflammatory factors in schizophrenia-spectrum disorders.

Journal: Brain, behavior, & immunity - health

Status: data only, 1 dataset cited

[16798] doi:10.1016/j.bpsgos.2025.100540 [paper, repository]

Response Monitoring Theta-Band Activities Across Emotional Contexts in Schizophrenia and Bipolar Spectrum Disorders.

Journal: Biological psychiatry global open science

Authors' code: takakunisuzuki (no license)

Status: code verified

[16799] doi:10.1016/j.cdnut.2025.107476 [paper]

Dietary Intake of n-3 Polyunsaturated Fatty Acids Prior to a Mild Traumatic Brain Injury Demonstrates a Dose-Response Effect for Neuroprotective Benefits in Male C57BL/6 Mice.

Journal: Current developments in nutrition

Status: code on request

[16800] doi:10.1016/j.ebiom.2025.105763 [paper, repository]

Radiomic and proteomic signatures of body mass index on brain ageing and Alzheimer's-like patterns of brain atrophy.

Journal: EBioMedicine

Authors' code: FilipposAna/Radiomic_signatures (no license)

Status: empty repository

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