Every paper, by date: page 77

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 77 of 200: 20 May 2025 to 12 May 2025.

Tuesday, 20 May 2025 (32 papers, 18 on this page)

[17025] doi:10.1093/pnasnexus/pgaf141 [paper, data]

Larger brains and relatively smaller cerebella in Asian elephants compared with African savanna elephants.

Journal: PNAS nexus

Status: data only, 2 datasets cited

[17026] doi:10.1111/epi.18408 [paper, repository]

Damage in thalamic projection to perilesional cortex as a prognostic biomarker for experimental post-traumatic epilepsy.

Journal: Epilepsia

Authors' code: cabeen/epibios-mri-rat (other)

Status: code verified, 26 files readable, 2 matches

[17027] doi:10.1186/s12864-025-11696-6 [paper, data]

Genome-wide analysis of lncRNA m6A methylation in the mouse cortex after repetitive mild traumatic brain injury.

Journal: BMC genomics

Status: data only, 1 dataset cited

[17028] doi:10.1371/journal.pbio.3002764 [paper, repository]

Rewarding animals based on their subjective percepts is enabled by online Bayesian estimation of perceptual biases.

Journal: PLoS biology

Authors' code: Zenodo 15341390 (MIT), GaborLengyel/reward_perception (MIT)

Status: code verified, 60 files readable, 1 match

[17029] doi:10.1371/journal.pbio.3003161 [paper, data]

Object knowledge representation in the human visual cortex requires a connection with the language system.

Journal: PLoS biology

Status: data only, 1 dataset cited

[17030] doi:10.1371/journal.pcbi.1013070 [paper, repository]

A multiscale electro-metabolic model of a rat neocortical circuit reveals the impact of ageing on central cortical layers.

Journal: PLoS computational biology

Authors' code: bluebrain/molsys-metabolicmodel (Apache-2.0), Zenodo 8283490 (Apache-2.0), bluebrain/bluepyemodel (Apache-2.0)

Status: code verified, 540 files readable, 8 matches

[17031] doi:10.1371/journal.pone.0306157 [paper, repository]

Frontal cortex hyperactivation and gamma desynchrony in Fragile X syndrome: Correlates of auditory hypersensitivity.

Journal: PloS one

Authors' code: cincibrainlab/vhtp (GPL-3.0), Zenodo 14967041 (CC-BY-4.0)

Status: code verified, 191 files readable, 6 matches

[17032] doi:10.1371/journal.pone.0321633 [paper, repository]

Re-evaluating the choice of gamma stimulation frequency for the potential treatment of Alzheimer's disease: Novel invisible spectral flicker evokes gamma responses at various frequencies.

Journal: PloS one

Authors' code: pypi.org/project/mne (no license), cran.r-project.org/src/base (no license), cran/lme4 (other)

Status: code verified, 161 files readable

[17033] doi:10.1523/eneuro.0459-24.2025 [paper, repository]

Stabilized Supralinear Network Model of Responses to Surround Stimuli in Primary Visual Cortex.

Journal: eNeuro

Authors' code: DiObeid/SSN_2d_V1 (MIT)

Status: code verified, 16 files readable, 2 matches

[17034] doi:10.2196/71560 [paper]

Digital Biomarkers for Parkinson Disease: Bibliometric Analysis and a Scoping Review of Deep Learning for Freezing of Gait.

Journal: Journal of medical Internet research

Status: code on request

[17035] doi:10.3389/fmed.2025.1577474 [paper, data]

Diagnosis of epileptic seizure neurological condition using EEG signal: a multi-model algorithm.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[17036] doi:10.3389/fnagi.2025.1486775 [paper]

Cerebral pulsatility might be a driver of neurofunctional reorganization in the aging brain: an MRI and NIRS study.

Journal: Frontiers in aging neuroscience

Status: code on request

[17037] doi:10.3389/fncom.2025.1566196 [paper, repository]

Simplified two-compartment neuron with calcium dynamics capturing brain-state specific apical-amplification, -isolation and -drive.

Journal: Frontiers in computational neuroscience

Authors' code: Zenodo 6368024 (no license)

Status: code verified

[17038] doi:10.3389/fnetp.2025.1565882 [paper, repository]

Eigenvector biomarker for prediction of epileptogenic zones and surgical success from interictal data.

Journal: Frontiers in network physiology

Authors' code: skroy576/eigenvectorbiomarker (no license)

Status: code verified, 4 files readable, 4 matches

[17039] doi:10.3390/brainsci15050530 [paper, repository]

Longitudinal Effects of Transcranial Direct Current Stimulation on Daily Rejection-Related Emotions in Borderline Personality Disorder: An Ecological Momentary Assessment Study Protocol.

Journal: Brain sciences

Authors' code: OSF fd84s (no license)

Status: code verified, 3 files readable

[17040] doi:10.3390/cancers17101713 [paper, repository]

Combinational Radiotherapies Improve Brain Cancer Treatment at High Dose Rates In Vitro.

Journal: Cancers

Authors' code: imagej.net/ij/index.html (no license)

Status: code verified

[17041] doi:10.3390/genes16050605 [paper]

Systems Genetics Reveals the Gene Regulatory Mechanisms of <i>Arrb2</i> in the Development of Autism Spectrum Disorders.

Journal: Genes

Status: data only

[17042] doi:10.7554/elife.103870 [paper, repository]

Flower/FLWR-1 regulates neuronal activity via the plasma membrane Ca<sup>2+</sup> ATPase to promote recycling of synaptic vesicles.

Journal: eLife

Authors' code: dvettkoe/SwimmingTracksProcessing (MIT), dvettkoe/MWT_Analysis (no license), MariusSeidenthal/pHluorin_Imaging_Analysis (MIT)

Status: code verified, 8 files readable, 3 matches

Monday, 19 May 2025 (40 papers)

[17043] doi:10.1002/advs.202504464 [paper, data]

Visualization of the Spiral Ganglion Neuron in Vivo Using a Novel ¹⁷⁷Lu Nuclear Molecule Label.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[17044] doi:10.1007/s00401-025-02889-0 [paper, data]

Apolipoprotein E abundance is elevated in the brains of individuals with Down syndrome-Alzheimer's disease.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[17045] doi:10.1007/s10802-025-01332-y [paper, data]

The Interplay between Maternal Depression and ADHD Symptoms in Predicting Emotional and Attentional Functioning in Toddlerhood.

Journal: Research on child and adolescent psychopathology

Status: code on request, 1 dataset cited

[17046] doi:10.1016/j.cellin.2025.100253 [paper, data]

Integrated 4D label-free proteome and SUMOylated proteome in glioma uncover novel pathological mechanisms and pave the way for precision therapy.

Journal: Cell insight

Status: data only, 1 dataset cited

[17047] doi:10.1016/j.celrep.2025.115664 [paper, repository]

Injecting information in the cortical reach-to-grasp network is effective in ventral but not dorsal nodes.

Journal: Cell reports

Authors' code: Zenodo 15043160 (CC-BY-4.0), bruszala/inject-info-icms-reach-to-grasp-network (no license)

Status: code verified, 32 files readable, 5 matches

[17048] doi:10.1016/j.isci.2025.112695 [paper, data]

A triple serine motif in the intracellular domain of SorCS2 impacts its cellular signaling.

Journal: iScience

Status: code on request, 1 dataset cited

[17049] doi:10.1016/j.isci.2025.112699 [paper, data]

KBG syndrome-associated protein ANKRD11 regulates SETD5 expression to modulate rRNA levels and translation.

Journal: iScience

Status: data only, 1 dataset cited

[17050] doi:10.1038/s41467-025-59652-y [paper, repository]

Stabilizing brain-computer interfaces through alignment of latent dynamics.

Journal: Nature communications

Authors' code: HennigLab/tndm (MIT), snel-repo/nomad (other), Zenodo 8247498 (MIT)

Status: code verified, 111 files readable, 25 matches

[17051] doi:10.1038/s41467-025-59676-4 [paper, repository]

Molecular simulations of enzymatic phosphorylation of disordered proteins and their condensates.

Journal: Nature communications

Authors' code: ezippo/hoomd3_phosphorylation (GPL-3.0), ezippo/ashbaugh_plugin (GPL-3.0), Zenodo 13833525 (CC-BY-4.0), Zenodo 15207448 (GPL-3.0), Zenodo 15207491 (GPL-3.0)

Status: code verified, 32 files readable, 3 matches

[17052] doi:10.1038/s41467-025-59679-1 [paper, repository]

Single-cell RNA-sequencing reveals early mitochondrial dysfunction unique to motor neurons shared across FUS- and TARDBP-ALS.

Journal: Nature communications

Authors' code: schwi24/Schweingruber_et_al_2023 (GPL-3.0), NijssenJ/Schweingruber2023 (AGPL-3.0)

Status: code verified, 27 files readable, 15 matches

[17053] doi:10.1038/s41467-025-59813-z [paper, data]

Epstein-Barr virus induces aberrant B cell migration and diapedesis via FAK-dependent chemotaxis pathways.

Journal: Nature communications

Status: data only, 1 dataset cited

[17054] doi:10.1038/s41467-025-60000-3 [paper, repository]

Optimized AAV capsids for basal ganglia diseases show robust potency and distribution.

Journal: Nature communications

Authors' code: Zenodo 14851572 (MIT)

Status: code verified, 8 files readable, 2 matches

[17055] doi:10.1038/s41592-025-02692-5 [paper, repository]

Imaging neuronal voltage beyond the scattering limit.

Journal: Nature methods

Authors' code: Tsai-WenChen/Activity-Localization-Imaging (GPL-3.0)

Status: code verified, 15 files readable, 4 matches

[17056] doi:10.1038/s41598-025-01121-z [paper, data]

Prostaglandin endoperoxide synthase 2 regulates neuroinflammation to mediate postoperative cognitive dysfunction in mice.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17057] doi:10.1038/s44319-025-00476-8 [paper, data]

An integrated anatomical, functional and evolutionary view of the Drosophila olfactory system.

Journal: EMBO reports

Status: data only, 2 datasets cited

[17058] doi:10.1073/pnas.2422911122 [paper, data]

A circuit model for transsaccadic space updating and mislocalization.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[17059] doi:10.1073/pnas.2424545122 [paper, data]

Physical activity stimulates clock neurons of the day-active rodent <i>Arvicanthis ansorgei</i>.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[17060] doi:10.1073/pnas.2501527122 [paper, data]

Loss of insulin signaling in microglia impairs cellular uptake of Aβ and neuroinflammatory response exacerbating AD-like neuropathology.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[17061] doi:10.1080/17590914.2025.2506406 [paper, data]

Proliferating Microglia Exhibit Unique Transcriptional and Functional Alterations in Alzheimer's Disease.

Journal: ASN neuro

Status: data only, 1 dataset cited

[17062] doi:10.1111/epi.18462 [paper, repository]

Mesial-to-lateral gradients of epileptiform activity to localize mesial temporal lobe epilepsy.

Journal: Epilepsia

Authors' code: penn-cnt/IEEG_Spike-Morphology (no license)

Status: code verified, 16 files readable, 12 matches

[17063] doi:10.1111/mec.17788 [paper, data]

Selection for Tameness in Red Junglefowl Recapitulates Genetic Loci Associated With Domestication-Related Brain Composition.

Journal: Molecular ecology

Status: data only, 1 dataset cited

[17064] doi:10.1186/s12880-025-01703-3 [paper, repository]

Multiple deep learning models based on MRI images in discriminating glioblastoma from solitary brain metastases: a multicentre study.

Journal: BMC medical imaging

Authors' code: SimpleITK/SimpleITK (Apache-2.0)

Status: code verified, 300 files readable, 2 matches

[17065] doi:10.1186/s12915-025-02242-7 [paper, data]

Horizontal cell connectivity in the anchovy retina-a 3D electron microscopic study.

Journal: BMC biology

Status: data only, 1 dataset cited

[17066] doi:10.1186/s12920-025-02155-y [paper, data]

Deep clinical and genetic analysis of 17p13.3 region: 38 pediatric patients diagnosed using next-generation sequencing and literature review.

Journal: BMC medical genomics

Status: data only, 1 dataset cited

[17067] doi:10.1186/s13041-025-01216-8 [paper, data]

DYRK1A modulates fear memory formation via epigenetic modification.

Journal: Molecular brain

Status: data only, 1 dataset cited

[17068] doi:10.1186/s40168-025-02122-w [paper, repository]

Microbiota alterations leading to amino acid deficiency contribute to depression in children and adolescents.

Journal: Microbiome

Authors' code: soedinglab/MMseqs2 (MIT), frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 1,189 files readable, 2 matches

[17069] doi:10.1186/s40478-025-02000-4 [paper, data]

hiPSC-neurons recapitulate the subtype-specific cell intrinsic nature of susceptibility to neurodegenerative disease-relevant aggregation.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[17070] doi:10.1242/dev.204254 [paper, data]

Developmental dynamics of marmoset prefrontal cortical SST and PV interneuron networks highlight primate-specific features.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[17071] doi:10.1371/journal.pcbi.1013087 [paper, repository]

Optical Neuroimage Studio (OptiNiSt): Intuitive, scalable, extendable framework for optical neuroimage data analysis.

Journal: PLoS computational biology

Authors' code: oist/optinist (GPL-3.0)

Status: code verified, 422 files readable, 2 matches

[17072] doi:10.1371/journal.pone.0321053 [paper, repository]

Depth-dependent contributions of various vascular zones to cerebral autoregulation and functional hyperemia: An in-silico analysis.

Journal: PloS one

Authors' code: hesfandi/Cerebrovascular_Model (MIT)

Status: code verified, 26 files readable, 3 matches

[17073] doi:10.1371/journal.pone.0322999 [paper, data]

Inverse modeling, analysis and control of twin rotor aerodynamic systems with optimized artificial intelligent controllers.

Journal: PloS one

Status: data only, 1 dataset cited

[17074] doi:10.1523/eneuro.0086-25.2025 [paper, data]

<i>Syngap^+/-</i> CA1 Pyramidal Neurons Exhibit Upregulated Translation of Long MRNAs Associated with LTP.

Journal: eNeuro

Status: data only, 1 dataset cited

[17075] doi:10.3389/fonc.2025.1574861 [paper, repository]

MDPNet: a dual-path parallel fusion network for multi-modal MRI glioma genotyping.

Journal: Frontiers in oncology

Authors' code: whz847/MDPNet (no license)

Status: code verified, 39 files readable, 3 matches

[17076] doi:10.3390/brainsci15050524 [paper, data]

Partner-Inflicted Brain Injury: Intentional, Concurrent, and Repeated Traumatic and Hypoxic Neurologic Insults.

Journal: Brain sciences

Status: data only, 1 dataset cited

[17077] doi:10.3390/ijms26104841 [paper, data]

Single-Cell Transcriptomic Profiling Reveals Regional Differences in the Prefrontal and Entorhinal Cortex of Alzheimer's Disease Brain.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[17078] doi:10.3758/s13415-025-01293-1 [paper, repository]

Adolescent cognitive control processing is associated with anxiety in young adulthood during the COVID-19 pandemic.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF bmzda (no license), NIMH-SDAN (no license)

Status: code verified

[17079] doi:10.7554/elife.100337 [paper, data]

Sensitivity to visual features in inattentional blindness.

Journal: eLife

Status: data only, 1 dataset cited

[17080] doi:10.7554/elife.105112 [paper, data]

Cortical dynamics in hand/forelimb S1 and M1 evoked by brief photostimulation of the mouse's hand.

Journal: eLife

Status: data only, 1 dataset cited

[17081] doi:10.7554/elife.106450 [paper, repository]

Viral-mediated Pou5f1 (Oct4) overexpression and inhibition of Notch signaling synergistically induce neurogenic competence in mammalian Müller glia.

Journal: eLife

Authors' code: SherineAwad/OCT4scRNA-ATAC (BSD-3-Clause)

Status: code verified, 12 files readable, 5 matches

[17082] doi:10.7554/elife.95733 [paper, repository]

A memory model of rodent spatial navigation in which place cells are memories arranged in a grid and grid cells are non-spatial.

Journal: eLife

Authors' code: dhuber1968/GridCellMemoryModel (MIT), Zenodo 15305628 (MIT)

Status: code verified, 4 files readable, 2 matches

Sunday, 18 May 2025 (5 papers)

[17083] doi:10.1038/s41467-025-59900-1 [paper, repository]

Electroconvulsive therapy generates a postictal wave of spreading depolarization in mice and humans.

Journal: Nature communications

Authors' code: gin.g-node.org/goldbergneurolab (no license)

Status: code verified

[17084] doi:10.1038/s41598-025-99858-0 [paper, data]

An ensemble deep learning framework for emotion recognition through wearable devices multi-modal physiological signals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17085] doi:10.1101/2025.05.14.654095 [paper, repository]

In-vivo evidence for increased tau deposition in temporal lobe epilepsy

Journal: bioRxiv (preprint)

Authors' code: MICA-MNI/2025_in-vivo_tauPET-mk6240_TLE (CC-BY-NC-4.0)

Status: code verified, 5 files readable, 3 matches

[17086] doi:10.1186/s12938-025-01393-6 [paper]

Design, construction, and deployment of a multi-locus transcranial magnetic stimulation system for clinical use.

Journal: Biomedical engineering online

Status: code on request

[17087] doi:10.3390/s25103178 [paper, data]

Virtual Electroencephalogram Acquisition: A Review on Electroencephalogram Generative Methods.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

Saturday, 17 May 2025 (15 papers)

[17088] doi:10.1016/j.nicl.2025.103805 [paper]

Blood-brain barrier permeability varies by brain region and APOE4 status and correlates with brain microstructure among high-AD risk groups.

Journal: NeuroImage. Clinical

Status: code on request

[17089] doi:10.1038/s41380-025-03052-7 [paper, data]

Elevated NEGR1 in brain induces anxiety or depression-like phenotypes and synaptic dysfunction.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[17090] doi:10.1038/s41390-025-04086-x [paper, repository]

Sustained breastfeeding associations with brain structure and cognition from late childhood to early adolescence.

Journal: Pediatric research

Authors' code: Adise-lab/abcd-lactation-cth (no license)

Status: code verified, 5 files readable, 8 matches

[17091] doi:10.1038/s41467-025-59735-w [paper, repository]

Auricular malformations are driven by copy number variations in a hierarchical enhancer cluster and a dominant enhancer recapitulates human pathogenesis.

Journal: Nature communications

Authors' code: nci/Drishti (MIT), singleron-RD/CeleScope (MIT), FredHutch/EChO (GPL-2.0)

Status: code verified, 982 files readable, 4 matches

[17092] doi:10.1038/s41467-025-59847-3 [paper, repository]

Optical neural engine for solving scientific partial differential equations.

Journal: Nature communications

Authors' code: GaoUtahLab/ONE_PDE_public (no license), AMReX-Microelectronics/MagneX (BSD-3-Clause), Zenodo 15253800 (CC-BY-4.0), Zenodo 15253853 (CC-BY-4.0)

Status: code verified, 63 files readable

[17093] doi:10.1038/s41467-025-59852-6 [paper, repository]

A reduced ability to discriminate social from non-social touch at the circuit level may underlie social avoidance in autism.

Journal: Nature communications

Authors' code: Brody-Lab/chronic_neuropixels (Apache-2.0), billkarsh/SpikeGLX (BSD-3-Clause), porteralab (no license), jcouto/pnc_spks (no license)

Status: code verified, 574 files readable, 1 match

[17094] doi:10.1038/s41467-025-59860-6 [paper, repository]

A spatio-temporal brain miRNA expression atlas identifies sex-independent age-related microglial driven miR-155-5p increase.

Journal: Nature communications

Authors' code: Zenodo 15211021 (CC-BY-4.0), ccb-sb/2024_brain_aging_mirna (no license)

Status: code verified, 194 files readable, 10 matches

[17095] doi:10.1038/s41467-025-59868-y [paper, repository]

Plasmonic coffee-ring biosensing for AI-assisted point-of-care diagnostics.

Journal: Nature communications

Authors' code: Zenodo 15249376 (CC-BY-4.0)

Status: code verified

[17096] doi:10.1038/s41467-025-59956-z [paper, repository]

A midbrain circuit mechanism for noise-induced negative valence coding.

Journal: Nature communications

Authors' code: Aharoni-Lab/Miniscope-DAQ-QT-Software (GPL-3.0), zhoupc/CNMF_E (GPL-3.0)

Status: code verified, 337 files readable, 2 matches

[17097] doi:10.1038/s41597-025-05141-2 [paper, repository]

Transcriptome of Taenia solium during in vitro cyst activation and initial growth into the tapeworm stage.

Journal: Scientific data

Authors' code: Zenodo 14814788 (CC-BY-4.0), dcastanedac/ts-seq (CC-BY-NC-SA-4.0)

Status: code verified, 19 files readable, 8 matches

[17098] doi:10.1038/s41598-025-02039-2 [paper]

Brain metabolic imaging-based model identifies cognitive stability in prodromal Alzheimer's disease.

Journal: Scientific reports

Status: code on request

[17099] doi:10.1038/s42003-025-08151-3 [paper, repository]

Functional divergence between the two cerebral hemispheres contributes to human fluid intelligence.

Journal: Communications biology

Authors' code: canlab/MediationToolbox (no license), liang-xinyu/Between-hemisphere-Functional-Divergence (CC0-1.0), Zenodo 15307203 (CC0-1.0)

Status: code verified, 233 files readable, 5 matches

[17100] doi:10.1101/2025.05.14.653752 [paper, repository]

Mice discriminate odour source distance via sub-sniff temporal features of odour plumes

Journal: bioRxiv (preprint)

Authors' code: RoboDoig/autonomouse-control (GPL-3.0), RoboDoig (no license), warnerwarner (no license), ackels-1085lab/Odour_distance_paper (no license), ackels-lab/Odour_distance_paper (MIT)

Status: code verified, 22 files readable, 2 matches

[17101] doi:10.3390/brainsci15050514 [paper, data]

A Randomized Controlled Trial Comparing Subcutaneous Preservation of Bone Flaps with Cryogenic Preservation of Bone Flaps for Cranioplasty in Cases of Traumatic Brain Injury.

Journal: Brain sciences

Status: data only, 1 dataset cited

[17102] doi:10.47626/1516-4446-2025-4195 [paper, data]

Can socioeconomic status moderate the effect of a conflictive family environment on brain structure and externalizing/internalizing behavior in children and adolescents?

Journal: Revista brasileira de psiquiatria (Sao Paulo, Brazil : 1999)

Status: data only, 2 datasets cited

Friday, 16 May 2025 (30 papers)

[17103] doi:10.1007/s12671-025-02583-y [paper, repository]

Sleep-Based Brain Age Is Reduced in Advanced Inner Engineering Meditators.

Journal: Mindfulness

Authors' code: bdsp.io/content/meditate (no license)

Status: code verified

[17104] doi:10.1016/j.cell.2025.04.030 [paper, repository]

Repeat-element RNAs integrate a neuronal growth circuit.

Journal: Cell

Authors' code: cistrome.org/ap (no license)

Status: code verified

[17105] doi:10.1016/j.jocmr.2025.101913 [paper, repository]

FlowMRI-Net: A generalizable self-supervised 4D flow MRI reconstruction network.

Journal: Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance

Authors' code: gitlab.ethz.ch/ibt-cmr/publications/flowmri_net (MIT)

Status: code verified, 16 files readable, 7 matches

[17106] doi:10.1016/j.xpro.2025.103828 [paper, data]

Protocol for AI-supported immunofluorescence colocalization analysis in human enteric neurons.

Journal: STAR protocols

Status: data only, 2 datasets cited

[17107] doi:10.1038/s41398-025-03384-6 [paper]

Associations of interpersonal and socioeconomic early life adversity dimensions with adolescents' corticolimbic circuits, cognition, and mental health.

Journal: Translational psychiatry

Status: code on request

[17108] doi:10.1038/s41398-025-03386-4 [paper, repository]

Basic stimulus processing alterations from top-down cognitive control in depression drive independent temporal components of multi-echo naturalistic fMRI data.

Journal: Translational psychiatry

Authors' code: TengfeiFeng/MDD_Temporal_Response_to_NS (no license)

Status: code verified, 4 files readable, 2 matches

[17109] doi:10.1038/s41398-025-03389-1 [paper]

Associations between sleep quality, plasma neurofilament light, and cognition in older adults without dementia.

Journal: Translational psychiatry

Status: code on request

[17110] doi:10.1038/s41421-025-00798-w [paper, data]

Spatiotemporal 3D chromatin organization across multiple brain regions during human fetal development.

Journal: Cell discovery

Status: code on request, 1 dataset cited

[17111] doi:10.1038/s41467-025-58293-5 [paper, repository]

Alternative splicing across the C. elegans nervous system.

Journal: Nature communications

Authors' code: cei/bulk_align (no license), cengenproject/novel_junctions (GPL-3.0), cengenproject/stringtie_quantif (GPL-3.0), cengenproject/splicing_browser (GPL-3.0), cengenproject/das_by_neuron (GPL-3.0), cengenproject/isoform_compare (GPL-3.0), cengenproject/suppa_events (GPL-3.0), cengenproject/reanalysis_tissue (GPL-3.0), cengenproject/quantif_exon_skipping (GPL-3.0), cengenproject/projectNPN (GPL-3.0), cengenproject/regression_exon_skipping (GPL-3.0), cengenproject (no license), cengenproject/bulk_align (GPL-3.0), Zenodo 14206313 (no license)

Status: code verified, 265 files readable, 14 matches

[17112] doi:10.1038/s41467-025-58296-2 [paper, repository]

Deep transcriptomics reveals cell-specific isoforms of pan-neuronal genes.

Journal: Nature communications

Authors' code: xcwolfe/Differential-Expression-in-C-elegans (GPL-3.0), Zenodo 14714675 (GPL-3.0)

Status: code verified, 36 files readable, 10 matches

[17113] doi:10.1038/s41597-025-05134-1 [paper, repository]

Large-scale fMRI dataset for the design of motor-based Brain-Computer Interfaces.

Journal: Scientific data

Authors' code: UMCU-RIBS/PANDA-fmri-dataset-validation (no license)

Status: code verified, 16 files readable, 6 matches

[17114] doi:10.1038/s41598-025-01235-4 [paper, data]

Lightweight hybrid transformers-based dyslexia detection using cross-modality data.

Journal: Scientific reports

Status: data only, 6 datasets cited

[17115] doi:10.1038/s41598-025-01870-x [paper, data]

Parp1 deletion rescues cerebellar hypotrophy in xrcc1 mutant zebrafish.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17116] doi:10.1073/pnas.2422437122 [paper, repository]

Myelin sheaths can act as compact temporary oxygen storage units as modeled by an electrical RC circuit model.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: WouterWV/oxygenmyelin (no license)

Status: code verified, 24 files readable, 1 match

[17117] doi:10.1093/braincomms/fcaf185 [paper, repository]

Disrupted functional brain network associated with presence of hallucinations in Parkinson's disease.

Journal: Brain communications

Authors' code: marcellamontagnese/PDPrestingfMRI (MIT)

Status: code verified, 6 files readable, 4 matches

[17118] doi:10.1093/braincomms/fcaf191 [paper, repository]

Thalamic disconnection from prefrontal cognitive control networks contributes to thalamic aphasia.

Journal: Brain communications

Authors' code: figshare 19154153 (CC-BY-4.0)

Status: code verified, 34 files readable

[17119] doi:10.1093/oons/kvaf001 [paper]

Computational anatomy: the cerebellar microzone computation.

Journal: Oxford open neuroscience

Status: code on request

[17120] doi:10.1101/2025.05.14.25327512 [paper]

Age-Related Characteristics of SYT1-Associated Neurodevelopmental Disorder

Journal: medRxiv (preprint)

Status: code on request

[17121] doi:10.1101/2025.05.15.654313 [paper, repository]

Fornix subdivisions and spatial learning: a diffusion MRI study

Journal: bioRxiv (preprint)

Authors' code: OSF vsk3u (no license)

Status: code verified, 8 files readable, 5 matches

[17122] doi:10.1111/acel.70091 [paper, data]

Nuclear Import Defects Drive Cell Cycle Dysregulation in Neurodegeneration.

Journal: Aging cell

Status: data only, 1 dataset cited

[17123] doi:10.1126/sciadv.adt9837 [paper, data]

Astrocytes-derived LCN2 triggers EV-A71-induced muscle soreness via accumulating lactate.

Journal: Science advances

Status: data only, 1 dataset cited

[17124] doi:10.1162/imag.a.1 [paper]

Novel identifications of cerebral hemodynamics using BOLD fMRI in patients with sickle cell disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[17125] doi:10.1162/imag.a.2 [paper, repository]

Multiscale comparative connectomics.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: microsoft/graspologic (MIT), neurodata/MCC (MIT)

Status: code verified, 210 files readable, 16 matches

[17126] doi:10.1162/imag_a_00578 [paper, repository]

Functional Localization of Visual Motion Area FST in Humans.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: vistalab/vistasoft (no license), putiw/FST_public (no license)

Status: code verified, 2,011 files readable, 9 matches

[17127] doi:10.1162/imag_a_00579 [paper, repository]

The impact of localization and registration accuracy on estimates of deep brain stimulation electrode position in stereotactic space.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: afids/afids-dbs (MIT)

Status: code verified, 7 files readable, 4 matches

[17128] doi:10.1162/imag_a_00580 [paper, repository]

Leveraging multimodal neuroimaging and GWAS for identifying modality-level causal pathways to Alzheimer's disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: junjypark/MV_Modality_IWAS (MIT)

Status: code verified, 39 files readable

[17129] doi:10.1186/s12911-025-03013-8 [paper, data]

Federated SPARQL query performance evaluation for exploring disease model mouse: combining gene expression, orthology, and disease knowledge graphs.

Journal: BMC medical informatics and decision making

Status: data only, 3 datasets cited

[17130] doi:10.3389/fncir.2025.1514937 [paper, repository]

The striatal compartments, striosome and matrix, are embedded in largely distinct resting-state functional networks.

Journal: Frontiers in neural circuits

Authors' code: jeff-waugh/Striatal-Connectivity-based-Parcellation (no license)

Status: code verified, 17 files readable, 2 matches

[17131] doi:10.3390/biology14050554 [paper, repository]

Integrating Proteomics and GWAS to Identify Key Tissues and Genes Underlying Human Complex Diseases.

Journal: Biology

Authors' code: chaoxue-gwas/pDESE (no license)

Status: code verified, 36 files readable, 2 matches

[17132] doi:10.3390/jcm14103487 [paper]

Transfusion Thresholds and Neurological Functional Outcome After Acute Brain Injury: An Updated Systematic Review and Meta-Analysis of Randomized Clinical Trials.

Journal: Journal of clinical medicine

Status: code on request

Thursday, 15 May 2025 (35 papers)

[17133] doi:10.1007/s00018-025-05698-6 [paper, data]

GPI-anchorless prion disease is sensitive to oxidative stress and shows potential for treatment with edaravone, based on iPS-derived neuron study.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[17134] doi:10.1007/s00221-025-07096-7 [paper]

Frontal midline theta power accounts for inter-individual differences in motor learning ability.

Journal: Experimental brain research

Status: code on request

[17135] doi:10.1016/j.celrep.2025.115717 [paper]

Optogenetic activation of cortical microglia promotes neuronal activity and pain hypersensitivity.

Journal: Cell reports

Status: code on request

[17136] doi:10.1016/j.nbd.2025.106954 [paper, repository]

Alternating hemiplegia of childhood associated mutations in Atp1a3 reveal diverse neurological alterations in mice.

Journal: Neurobiology of disease

Authors' code: scottiadamson/atp1a3_mouse_rna_seq_analysis (MIT)

Status: code verified, 10 files readable, 2 matches

[17137] doi:10.1016/j.neuroimage.2025.121248 [paper]

Pumping up your predictive power for cognitive state detection with the proper GAINS.

Journal: NeuroImage

Status: code on request

[17138] doi:10.1016/j.neuropsychologia.2025.109171 [paper, data]

Assessing sensitivity to semantic and syntactic information in deaf readers: An ERP study.

Journal: Neuropsychologia

Status: data only, 2 datasets cited

[17139] doi:10.1038/s41398-025-03385-5 [paper, repository]

Altered brain network dynamics in motor functional neurological disorders: the role of the right temporo-parietal junction.

Journal: Translational psychiatry

Authors' code: webersamantha/PCA_CAP_SW (no license)

Status: code verified, 195 files readable, 4 matches

[17140] doi:10.1038/s41467-025-59254-8 [paper, repository]

Long arcuate fascicle in wild and captive chimpanzees as a potential structural precursor of the language network.

Journal: Nature communications

Authors' code: mpaquette/ebc_dmri_preprocessing (no license), tozbu/AF_chimp_brain (no license)

Status: code verified, 51 files readable, 8 matches

[17141] doi:10.1038/s41467-025-59584-7 [paper, repository]

Multi-institutional atlas of brain metastases informs spatial modeling for precision imaging and personalized therapy.

Journal: Nature communications

Authors' code: OSF fkqmr (no license), medomics/BrainMets_RiskMaps (no license), Zenodo 15132555 (CC-BY-4.0)

Status: code verified, 36 files readable, 5 matches

[17142] doi:10.1038/s41467-025-59650-0 [paper, data]

Chemotactic Zn micromotor for treatment of high blood ammonia-associated hepatic encephalopathy.

Journal: Nature communications

Status: data only, 1 dataset cited

[17143] doi:10.1038/s41467-025-59850-8 [paper, data]

G&lt;sub&gt;z&lt;/sub&gt;ESTY as an optimized cell-based assay for initial steps in GPCR deorphanization.

Journal: Nature communications

Status: data only, 1 dataset cited

[17144] doi:10.1038/s41597-025-05159-6 [paper, repository]

Lights, Camera, Emotion: REELMO's 1060 Hours of Affective Reports to Explore Emotions in Naturalistic Contexts.

Journal: Scientific data

Authors' code: giacomohandjaras/REELMO (GPL-3.0)

Status: code verified, 68 files readable, 12 matches

[17145] doi:10.1038/s41598-025-01747-z [paper, data]

An explainable EEG epilepsy detection model using friend pattern.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17146] doi:10.1038/s41598-025-97378-5 [paper, data]

An automated multi parameter neural architecture discovery framework using ChatGPT in the backend.

Journal: Scientific reports

Status: data only, 4 datasets cited

[17147] doi:10.1038/s44184-025-00133-x [paper, data]

Canonical and non-canonical roles of oligodendrocyte precursor cells in mental disorders.

Journal: Npj mental health research

Status: data only, 1 dataset cited

[17148] doi:10.1101/2025.05.11.653249 [paper, repository]

NodoMap: a spatio-cellular map of the mouse nodose ganglia

Journal: bioRxiv (preprint)

Authors' code: sc2470/NodoMap (MIT)

Status: code verified, 36 files readable, 25 matches

[17149] doi:10.1101/2025.05.14.653490 [paper]

Neural stem cell quiescence is actively maintained by the epigenome

Journal: bioRxiv (preprint)

Status: code on request

[17150] doi:10.1111/acel.70095 [paper, repository]

Microglia Single-Cell RNA-Seq Enables Robust and Applicable Markers of Biological Aging.

Journal: Aging cell

Authors' code: CompCy-lab/microglia-aging-clock (no license)

Status: code verified, 5 files readable, 6 matches

[17151] doi:10.1111/epi.18447 [paper, repository]

Seizure-onset zone lateralization in temporal lobe epilepsy using 7T rs-fMRI: Direct comparison with 3T rs-fMRI.

Journal: Epilepsia

Authors' code: penn-cnt/3t_7t (no license)

Status: code verified, 5 files readable, 3 matches

[17152] doi:10.1126/science.adq5233 [paper, repository]

Norepinephrine changes behavioral state through astroglial purinergic signaling.

Journal: Science (New York, N.Y.)

Authors' code: Zenodo 14278354 (CC-BY-4.0), alexbchen/chen_et_al_2024_adenosine (no license)

Status: code verified, 42 files readable, 2 matches

[17153] doi:10.1159/000546425 [paper, data]

Characteristics of Neuromuscular Ultrasound in Patients with Amyotrophic Lateral Sclerosis.

Journal: Neuro-degenerative diseases

Status: data only, 1 dataset cited

[17154] doi:10.1172/jci183941 [paper, data]

Clemastine fumarate accelerates accumulation of disability in progressive multiple sclerosis by enhancing pyroptosis.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[17155] doi:10.1186/s13024-025-00838-9 [paper, repository]

Network analysis of the cerebrospinal fluid proteome reveals shared and unique differences between sporadic and familial forms of amyotrophic lateral sclerosis.

Journal: Molecular neurodegeneration

Authors' code: edammer/parANOVA (MIT), edammer/cellTypeFET (MIT)

Status: code verified, 7 files readable

[17156] doi:10.1186/s13195-025-01747-1 [paper, data]

Increased excitability of dentate gyrus mossy cells occurs early in life in the Tg2576 model of Alzheimer's disease.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[17157] doi:10.1186/s13195-025-01752-4 [paper, repository]

Revealing heterogeneity in mild cognitive impairment based on individualized structural covariance network.

Journal: Alzheimer's research & therapy

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 2 matches

[17158] doi:10.1186/s13578-025-01390-1 [paper, data]

Characterization and prognostic of CD8 + TIM3 + CD101 + T cells in glioblastoma multiforme.

Journal: Cell & bioscience

Status: data only, 14 datasets cited

[17159] doi:10.1186/s40478-025-02029-5 [paper, data]

Shaking into deficits: investigating behavioural and neuropathological outcomes associated with a novel preclinical model of infant abusive head trauma.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[17160] doi:10.1227/neuprac.0000000000000138 [paper, repository]

Semiautomated Pipeline Effectively Assesses Severity and Monitor Disease Progression in Compressed Spinal Cord of Degenerative Cervical Myelopathy Patients.

Journal: Neurosurgery practice

Authors' code: Mfauziyya/DCM_Neurosurgery_Practice (MIT)

Status: code verified, 4 files readable, 2 matches

[17161] doi:10.1371/journal.pone.0320777 [paper, repository]

Combining meta reinforcement learning with neural plasticity mechanisms for improved AI performance.

Journal: PloS one

Authors' code: Zenodo 14445464 (CC-BY-4.0), yoyoyo20230506/meta (MIT)

Status: code verified, 8 files readable

[17162] doi:10.21203/rs.3.rs-6417959/v1 [paper, repository]

Pre-stimulus microstates and bodily signals independently influence perceptual awareness at the discrimination threshold

Journal: Research Square (preprint)

Authors' code: Zenodo 14499167 (MIT), Zenodo 15173349 (MIT), vivile42/oral_24 (MIT), vivile42/leupin_britz_micro (MIT)

Status: code verified, 133 files readable, 3 matches

[17163] doi:10.3389/fgwh.2025.1531062 [paper, data]

&lt;i&gt;APOE4&lt;/i&gt; and chronic health risk factors are associated with sex-specific preclinical Alzheimer's disease neuroimaging biomarkers.

Journal: Frontiers in global women's health

Status: data only, 1 dataset cited

[17164] doi:10.34133/research.0709 [paper, repository]

Functional Ultrasound Imaging of Auditory Responses in Comatose Patients.

Journal: Research (Washington, D.C.)

Authors' code: Alex-czh/brain_fus (no license), Zenodo 14511961 (CC-BY-4.0)

Status: code verified, 1 file readable

[17165] doi:10.7554/elife.105896 [paper, repository]

Single nuclei RNA-sequencing of adult brain neurons derived from type 2 neuroblasts reveals transcriptional complexity in the insect central complex.

Journal: eLife

Authors' code: Zenodo 14529706 (GPL-3.0), dgepiney/2023_Doe_Drosophila_Central_Brain_RNAseq (no license), samuel-marsh/sccustomize (GPL-3.0)

Status: code verified, 138 files readable, 14 matches

[17166] doi:10.7554/elife.97864 [paper, data]

Mapping serotonergic dynamics using drug-modulated molecular connectivity in rats.

Journal: eLife

Status: data only, 1 dataset cited

[17167] doi:10.7717/peerj-cs.2897 [paper, repository]

Classification of the stages of Alzheimer's disease based on three-dimensional lightweight neural networks.

Journal: PeerJ. Computer science

Authors' code: Zenodo 14786594 (CC-BY-4.0)

Status: code verified, 52 files readable, 4 matches

Wednesday, 14 May 2025 (46 papers)

[17168] doi:10.1002/advs.202414016 [paper, repository]

Comparison of Large Language Model with Aphasia.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: google-research/albert (Apache-2.0), meta-llama/llama-models (other)

Status: code verified, 89 files readable

[17169] doi:10.1007/s40520-025-03062-z [paper, data]

Targeting brain health in subjective cognitive decline: insights from a multidomain randomized controlled trial.

Journal: Aging clinical and experimental research

Status: data only, 1 dataset cited

[17170] doi:10.1016/j.celrep.2025.115704 [paper]

Adipocyte metabolic state regulates glial phagocytic function.

Journal: Cell reports

Status: code on request

[17171] doi:10.1016/j.dcn.2025.101563 [paper, repository]

Missing data approaches for longitudinal neuroimaging research: Examples from the Adolescent Brain and Cognitive Development (ABCD) Study®.

Journal: Developmental cognitive neuroscience

Authors' code: OSF q8v5s (no license)

Status: code verified, 6 files readable, 9 matches

[17172] doi:10.1016/j.ebiom.2025.105756 [paper, repository]

Unveiling diverse clinical symptom patterns and neural activity profiles in major depressive disorder subtypes.

Journal: EBioMedicine

Authors' code: Xiang-Wangs/MDD-Subtyping (other)

Status: code verified, 4 files readable, 4 matches

[17173] doi:10.1038/s41467-025-59110-9 [paper, repository]

Developing brain asymmetry shapes cognitive and psychiatric outcomes in adolescence.

Journal: Nature communications

Authors' code: xinranwu/ABCD_YoungAsym (no license)

Status: code verified, 3 files readable, 2 matches

[17174] doi:10.1038/s41467-025-59635-z [paper, data]

Cadherins orchestrate specific patterns of perisomatic inhibition onto distinct pyramidal cell populations.

Journal: Nature communications

Status: data only, 1 dataset cited

[17175] doi:10.1038/s41467-025-59686-2 [paper, data]

Energy state guides reward seeking via an extended amygdala to lateral hypothalamus pathway.

Journal: Nature communications

Status: data only, 1 dataset cited

[17176] doi:10.1038/s41467-025-59775-2 [paper, repository]

Unraveling mutagenic processes influencing the tumor mutational patterns of individuals with constitutional mismatch repair deficiency.

Journal: Nature communications

Authors' code: ToolsVanBox/NF-IAP (MIT), ToolsVanBox/SMuRF (MIT), kuiper-lab/Tumor-mutational-patterns-in-CMMRD (GPL-3.0), Zenodo 14938856 (GPL-3.0)

Status: code verified, 32 files readable, 12 matches

[17177] doi:10.1038/s41467-025-59825-9 [paper, repository]

Supramodal and cross-modal representations of working memory in higher-order cortex.

Journal: Nature communications

Authors' code: memcolab/Park2025NatCommu (BSD-3-Clause)

Status: code verified, 3 files readable

[17178] doi:10.1038/s41531-025-00981-6 [paper, data]

Differential memory enrichment of cytotoxic CD4 T cells in Parkinson's disease patients reactive to α-synuclein.

Journal: NPJ Parkinson's disease

Status: data only, 3 datasets cited

[17179] doi:10.1038/s41558-025-02332-y [paper, repository]

Evolution of warming tolerance alters physiology and life history traits in zebrafish.

Journal: Nature climate change

Authors' code: figshare 28435322 (CC-BY-4.0)

Status: code verified, 1 file readable, 5 matches

[17180] doi:10.1038/s41586-025-09010-1 [paper, repository]

Spatial transcriptomics reveals human cortical layer and area specification.

Journal: Nature

Authors' code: carsen-stringer/vizgen-postprocessing (Apache-2.0), ShunzhouJiang/Spatial-Single-cell-Analysis-of-Human-Cortical-Layer-and-Area-Specification (no license)

Status: code verified, 281 files readable, 37 matches

[17181] doi:10.1038/s41593-025-01954-x [paper, repository]

Aging and injury drive neuronal senescence in the dorsal root ganglia.

Journal: Nature neuroscience

Authors' code: lmcinnes/umap (BSD-3-Clause), scikit-learn-contrib/hdbscan (BSD-3-Clause), Tawfik-Lab/Donovan_Senescence_2024 (no license), Zenodo 14902120 (CC-BY-4.0)

Status: code verified, 132 files readable, 9 matches

[17182] doi:10.1038/s41597-025-05127-0 [paper, data]

Dataset for Evaluating the Production of Phonotactically Legal and Illegal Pseudowords.

Journal: Scientific data

Status: code on request, 2 datasets cited

[17183] doi:10.1038/s41598-025-00433-4 [paper, data]

All identical objects reduce memory load at the late maintenance stage in working memory.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17184] doi:10.1038/s41598-025-00670-7 [paper, repository]

A role for preparatory midfrontal theta in autism as revealed by a high executive load brain-computer interface reverse spelling task.

Journal: Scientific reports

Authors' code: CIBIT-UC/BCI_autism (GPL-3.0)

Status: code verified, 19 files readable, 6 matches

[17185] doi:10.1038/s41598-025-00890-x [paper, data]

A multi-layered defense against adversarial attacks in brain tumor classification using ensemble adversarial training and feature squeezing.

Journal: Scientific reports

Status: data only, 4 datasets cited

[17186] doi:10.1038/s41598-025-01072-5 [paper, data]

Early detection of Alzheimer's disease progression stages using hybrid of CNN and transformer encoder models.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17187] doi:10.1038/s41598-025-01560-8 [paper, data]

Scream's roughness grants privileged access to the brain during sleep.

Journal: Scientific reports

Status: code on request, 2 datasets cited

[17188] doi:10.1038/s42003-025-08129-1 [paper]

Abstract choice representations during stable choice-response associations.

Journal: Communications biology

Status: code on request

[17189] doi:10.1073/pnas.2416181122 [paper, data]

Structural basis of human Na&lt;sub&gt;v&lt;/sub&gt;1.5 gating mechanisms.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 4 datasets cited

[17190] doi:10.1088/1741-2552/adc2d4 [paper, repository]

Biomimetic stimulation patterns drive natural artificial touch percepts using intracortical microstimulation in humans.

Journal: Journal of neural engineering

Authors' code: CorticalBionics/BiomimeticNaturalness (MIT)

Status: code verified, 11 files readable, 5 matches

[17191] doi:10.1088/1741-2552/add0e5 [paper, data]

Speech motor cortex enables BCI cursor control and click.

Journal: Journal of neural engineering

Status: data only, 1 dataset cited

[17192] doi:10.1093/scan/nsaf051 [paper]

Neural representations in MPFC and insula encode individual differences in estimating others' preferences.

Journal: Social cognitive and affective neuroscience

Status: code on request

[17193] doi:10.1098/rsob.240384 [paper, repository]

Sex-specific loss of mitochondrial membrane integrity in the auditory brainstem of a mouse model of Fragile X Syndrome.

Journal: Open biology

Authors' code: Zenodo 14274136 (CC-BY-4.0)

Status: empty repository

[17194] doi:10.1098/rspb.2024.2097 [paper, repository]

Behavioural and neural correlates of social hierarchy formation in a sex-changing fish.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7766567 (no license)

Status: code found, still to be checked

[17195] doi:10.1098/rspb.2024.2967 [paper, repository]

Perceiving object size in pictures involves high-level processing.

Journal: Proceedings. Biological sciences

Authors' code: OSF cfqt6 (no license), doi:10.6084/m9.figshare.c.7729350 (no license)

Status: code verified

[17196] doi:10.1101/2025.05.12.653436 [paper, data]

Information theoretic measures of neural and behavioural coupling predict representational drift

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[17197] doi:10.1101/2025.05.12.653626 [paper, repository]

Breaking Balance: Encoding local error signals in perturbations of excitation-inhibition balance

Journal: bioRxiv (preprint)

Authors' code: fmibasel/balance-controlled-plasticity (no license)

Status: dead link

[17198] doi:10.1101/2025.05.13.653495 [paper, repository]

A spatiotemporal cancer cell trajectory underlies glioblastoma heterogeneity

Journal: bioRxiv (preprint)

Authors' code: PMBio/spaceTree (MIT), pmbio.github.io/spacetree (no license), xwanaf/UniGeneX (GPL-3.0)

Status: code verified, 39 files readable, 3 matches

[17199] doi:10.1101/2025.05.14.654005 [paper, repository]

Cell-type-specific synaptic scaling mechanisms differentially contribute to associative learning

Journal: bioRxiv (preprint)

Authors' code: comp-neural-circuits/cell-type-specific-synaptic-scaling (no license)

Status: code verified, 12 files readable, 3 matches

[17200] doi:10.1101/2025.05.14.654031 [paper]

DCHS1 Modulates Forebrain Proportions in Modern Humans via a Glycosylation Change

Journal: bioRxiv (preprint)

Status: data only

[17201] doi:10.1111/acel.70070 [paper, data]

Inactivation of Histone Chaperone HIRA Unmasks a Link Between Normal Embryonic Development of Melanoblasts and Maintenance of Adult Melanocyte Stem Cells.

Journal: Aging cell

Status: data only, 1 dataset cited

[17202] doi:10.1117/1.jbo.30.5.058001 [paper]

Resorbable optical fibers for interstitial photodynamic therapy-assessment of photosensitizer spatial distribution in tumors.

Journal: Journal of biomedical optics

Status: code on request

[17203] doi:10.1126/sciadv.adu4098 [paper, repository]

State-dependent associative plasticity highlights function-specific premotor-motor pathways crucial for arbitrary visuomotor mapping.

Journal: Science advances

Authors' code: SoniaTurrini/MEPautomatedanalysis (no license), OSF 2p3t6 (no license)

Status: code verified, 8 files readable, 3 matches

[17204] doi:10.1136/bmjoq-2024-003065 [paper]

Mapping patient encounters to identify recruitment timepoints after brain tumour surgery: a cohort and cross-sectional study.

Journal: BMJ open quality

Status: code on request

[17205] doi:10.1186/s12915-025-02235-6 [paper, data]

Transcriptomic signatures of oxytosis/ferroptosis are enriched in Alzheimer's disease.

Journal: BMC biology

Status: data only, 1 dataset cited

[17206] doi:10.1371/journal.pbio.3003176 [paper, repository]

Molecular states underlying neuronal cell type development and plasticity in the postnatal whisker cortex.

Journal: PLoS biology

Authors' code: shekharlab/wS1dev (MIT), Zenodo 15133569 (MIT)

Status: code verified, 8 files readable, 5 matches

[17207] doi:10.1371/journal.pone.0322735 [paper, data]

Electromagnetic exposure levels of electric vehicle drive motors to cochlear implanted passenger.

Journal: PloS one

Status: data only, 1 dataset cited

[17208] doi:10.1371/journal.pone.0322927 [paper, repository]

Perceiving speech from a familiar speaker engages the person identity network.

Journal: PloS one

Authors' code: phon.ucl.ac.uk/resource/software-other.php (no license), OSF z2dsu (no license)

Status: code verified

[17209] doi:10.1523/jneurosci.1370-24.2025 [paper, repository]

Neuronal Synchronization and Bidirectional Activity Spread Explain Efficient Swimming in a Whole-Body Model of Hydrozoan Jellyfish.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: fpallasdies/HydrozoaNerveNet (MIT)

Status: code verified, 6 files readable

[17210] doi:10.21203/rs.3.rs-6499111/v1 [paper, repository]

Acute neuronal cell death and neuroinflammation per se do not trigger secondary autoimmune encephalitis

Journal: Research Square (preprint)

Authors' code: vgastaldi/MMQT-longDTA (no license)

Status: code verified, 2 files readable, 2 matches

[17211] doi:10.3389/fmed.2025.1519628 [paper, data]

Mechanical stimulation prevents impairment of axon growth and overcompensates microtubule destabilization in cellular models of Alzheimer's disease and related Tau pathologies.

Journal: Frontiers in medicine

Status: data only, 2 datasets cited

[17212] doi:10.3389/fnhum.2025.1566566 [paper, repository]

Koopman-based linearization of preparatory EEG dynamics in Parkinson's disease during galvanic vestibular stimulation.

Journal: Frontiers in human neuroscience

Authors' code: niktaaan/DeepKoopman_PD (MIT)

Status: code verified, 10 files readable, 6 matches

[17213] doi:10.3389/fnins.2025.1571682 [paper, repository]

Aberrant white matter and subcortical gray matter functional network connectivity associated with static and dynamic characteristics in subjects with temporal lobe epilepsy.

Journal: Frontiers in neuroscience

Authors' code: sentudas32/FNs (no license)

Status: code verified, 2 files readable, 5 matches

Tuesday, 13 May 2025 (32 papers)

[17214] doi:10.1016/j.celrep.2025.115714 [paper]

The ventral CA2 region of the hippocampus and its differential contributions to social memory and social aggression.

Journal: Cell reports

Status: code on request

[17215] doi:10.1016/j.crmeth.2025.101051 [paper, data]

Profiling human iPSC-derived sensory neurons for analgesic drug screening using a multi-electrode array.

Journal: Cell reports methods

Status: code on request, 1 dataset cited

[17216] doi:10.1016/j.dcn.2025.101568 [paper, repository]

Sex differences in maturational timing of amygdala and prefrontal cortex volumes and white matter tract microstructure.

Journal: Developmental cognitive neuroscience

Authors' code: figshare 7865186 (CC-BY-4.0)

Status: empty repository

[17217] doi:10.1016/j.isci.2025.112649 [paper]

Central role of regular firing neurons of centrolateral amygdala in affective behaviors.

Journal: iScience

Status: code on request

[17218] doi:10.1016/j.isci.2025.112650 [paper, data]

Low-frequency cortical activity reflects context-dependent parsing of word sequences.

Journal: iScience

Status: code on request, 1 dataset cited

[17219] doi:10.1017/s0033291725001217 [paper, repository]

Characterizing pleiotropy among bipolar disorder, schizophrenia, and major depression: a genome-wide cross-disorder meta-analysis.

Journal: Psychological medicine

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable, 2 matches

[17220] doi:10.1038/s41380-025-03047-4 [paper, repository]

Deciphering the influence of socioeconomic status on brain structure: insights from Mendelian randomization.

Journal: Molecular psychiatry

Authors' code: precimed/mixer (GPL-3.0), GenomicSEM/GenomicSEM (GPL-3.0)

Status: code verified, 39 files readable, 4 matches

[17221] doi:10.1038/s41588-025-02189-z [paper, repository]

Genome-wide analyses identify 30 loci associated with obsessive-compulsive disorder.

Journal: Nature genetics

Authors' code: sites.google.com/a/broadinstitute.org (no license), bulik/ldsc (GPL-3.0), genomicsem/genomicsem (GPL-3.0), figshare 28451894 (CC-BY-4.0)

Status: code verified, 61 files readable, 5 matches

[17222] doi:10.1038/s41597-025-05130-5 [paper, data]

A large neuronal dataset for natural category-based free-gaze visual search in macaques.

Journal: Scientific data

Status: data only, 1 dataset cited

[17223] doi:10.1038/s41598-025-99187-2 [paper, data]

Edaravone dexborneol provides neuroprotective benefits by suppressing ferroptosis in experimental intracerebral hemorrhage.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17224] doi:10.1038/s41746-025-01690-3 [paper]

Wearable fNIRS platform for dense sampling and precision functional neuroimaging.

Journal: NPJ digital medicine

Status: code on request

[17225] doi:10.1038/s42003-025-08082-z [paper, repository]

Emergence of a synergistic scaffold in the brains of human infants.

Journal: Communications biology

Authors' code: nstevensonUH/Neonatal-EEG-Analysis (MIT)

Status: code verified, 46 files readable, 3 matches

[17226] doi:10.1038/s42004-025-01525-y [paper, repository]

Dual fragmentation via collision-induced and oxygen attachment dissociations using water and its radicals for C=C position-resolved lipidomics.

Journal: Communications chemistry

Authors' code: systemsomicslab/MsdialWorkbench (CC-BY-4.0)

Status: code verified, 88 files readable, 3 matches

[17227] doi:10.1073/pnas.2415268122 [paper, repository]

Split genetically encoded calcium indicators for interorganellar junctions.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.5061/dryad.5mkkwh7h4 (no license)

Status: code verified

[17228] doi:10.1073/pnas.2423428122 [paper]

CaMK modulates sensory neural activity to control longevity and proteostasis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only

[17229] doi:10.1073/pnas.2423642122 [paper, data]

Motor imagery enhances performance beyond the imagined action.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[17230] doi:10.1101/2025.05.11.653329 [paper, repository]

Assessing impacts of mitochondrial dysfunction on axonal microtubule bundles as potential mechanism in neurodegeneration

Journal: bioRxiv (preprint)

Authors' code: figshare 106631 (CC-BY-4.0)

Status: empty repository

[17231] doi:10.1186/s40635-025-00759-3 [paper, repository]

Effect of extended intravenous diclofenac infusions on brain tissue oxygenation in patients with acute brain injury.

Journal: Intensive care medicine experimental

Authors' code: JulianKlug/neuropyro (MIT)

Status: code verified, 13 files readable, 3 matches

[17232] doi:10.1371/journal.pcbi.1013083 [paper, repository]

The effects of the post-delay epochs on working memory error reduction.

Journal: PLoS computational biology

Authors' code: AgeYY/Post-delay_WM (MIT)

Status: code verified, 130 files readable, 21 matches

[17233] doi:10.1371/journal.pone.0320757 [paper, repository]

OS-DETR: End-to-end brain tumor detection framework based on orthogonal channel shuffle networks.

Journal: PloS one

Authors' code: dkx2077/OS-DETR (MIT)

Status: code verified, 135 files readable, 17 matches

[17234] doi:10.1371/journal.pone.0322341 [paper, repository]

Registered Report: Neural correlates of thematic role assignment for passives in Standard Indonesian.

Journal: PloS one

Authors' code: OSF vhdz2 (no license)

Status: code verified, 5 files readable, 2 matches

[17235] doi:10.3389/fncom.2025.1529902 [paper, data]

Machine learning identifies genes linked to neurological disorders induced by equine encephalitis viruses, traumatic brain injuries, and organophosphorus nerve agents.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[17236] doi:10.3389/fnimg.2025.1487888 [paper, repository]

Neuroimaging correlates of psychological resilience: an Open Science systematic review and meta-analysis.

Journal: Frontiers in neuroimaging

Authors' code: gandrewjames/resilience_metaanalysis (no license)

Status: code verified, 2 files readable, 2 matches

[17237] doi:10.3389/fphys.2025.1579499 [paper, repository]

RNA-seq revealed the effects of heat stress on different brain regions of &lt;i&gt;Leiocassis longirostris&lt;/i&gt;.

Journal: Frontiers in physiology

Authors' code: DaehwanKimLab/hisat2 (GPL-3.0)

Status: code verified, 252 files readable

[17238] doi:10.3389/fpsyg.2025.1438080 [paper, data]

Modeling the arousal potential of epistemic emotions using Bayesian information gain: a framework for inquiry cycles driven by free energy fluctuations.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[17239] doi:10.3389/fpsyt.2025.1560053 [paper, data]

The effects of alcohol use severity and polygenic risk on gray matter volumes in young adults.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[17240] doi:10.3390/genes16050573 [paper, data]

<i>Olig1/2</i> Drive Astrocytic Glioblastoma Proliferation Through Transcriptional Co-Regulation of Various Cyclins.

Journal: Genes

Status: data only, 1 dataset cited

[17241] doi:10.34133/cbsystems.0205 [paper, repository]

Safety Decision-Making for Autonomous Vehicles Integrating Passenger Physiological States by fNIRS.

Journal: Cyborg and bionic systems (Washington, D.C.)

Authors' code: haoyizheng2000/-Safety-Decision-Making-for-Autonomous-Vehicles-Integrating-Passenger-Physiological-States-by-fNIRS (no license)

Status: code verified, 4 files readable, 3 matches

[17242] doi:10.7554/elife.101369 [paper, repository]

Transcriptional pattern enriched for synaptic signaling is associated with shorter survival of patients with high-grade serous ovarian cancer.

Journal: eLife

Authors' code: arkajyotibhattacharya/TranscriptionalLandscapeOvarianCancer (GPL-2.0)

Status: code verified, 33 files readable, 1 match

[17243] doi:10.7554/elife.90327 [paper, repository]

Dual-color optical activation and suppression of neurons with high temporal precision.

Journal: eLife

Authors' code: NabaviLab-Git/WhiskerTrack (no license), nabavilab-git/dual-color-optical-activation-and-suppression-of-neurons-with-high-temporal-precision (MIT)

Status: code verified, 12 files readable

[17244] doi:10.7554/elife.96217 [paper, repository]

Convolutional networks can model the functional modulation of the MEG responses associated with feed-forward processes during visual word recognition.

Journal: eLife

Authors' code: wmvanvliet/viswordrec-baseline (BSD-3-Clause)

Status: code verified, 15 files readable, 6 matches

[17245] doi:10.7554/elife.98563 [paper, repository]

Role of posterior medial thalamus in the modulation of striatal circuitry and choice behavior.

Journal: eLife

Authors' code: margolislab/Yonk_2024 (MIT)

Status: code verified, 76 files readable, 21 matches

Monday, 12 May 2025 (39 papers, 3 on this page)

[17246] doi:10.1016/j.bpsgos.2025.100533 [paper, repository]

Association Between Neighborhood Opportunity, Cognitive Function, and Brain Structure in Youths.

Journal: Biological psychiatry global open science

Authors' code: lanzhou-psy/COI_Neurocognition (no license)

Status: code verified, 2 files readable, 1 match

[17247] doi:10.1016/j.isci.2025.112481 [paper, repository]

Effects of corticothalamic feedback depend on visual responsiveness and stimulus type.

Journal: iScience

Authors' code: Zenodo 15479878 (CC-BY-4.0), Zenodo 15479877 (CC-BY-4.0), Zenodo 15497538 (CC-BY-4.0)

Status: code verified

[17248] doi:10.1016/j.isci.2025.112557 [paper]

Polyunsaturated fatty acids in lipid membranes regulate human neuronal function and amyloid-β production.

Journal: iScience

Status: code on request

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