Every paper, by date: page 76

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 76 of 200: 27 May 2025 to 20 May 2025.

Tuesday, 27 May 2025 (49 papers, 42 on this page)

[16801] doi:10.1016/j.ebiom.2025.105773 [paper, repository]

Automatic identification of Parkinsonism using clinical multi-contrast brain MRI: a large self-supervised vision foundation model strategy.

Journal: EBioMedicine

Authors' code: MAI-Lab-West-China-Hospital/SwinBrain (no license)

Status: code verified, 7 files readable, 2 matches

[16802] doi:10.1016/j.ebiom.2025.105777 [paper, data]

Induction of haemodynamic travelling waves by glial-related vasomotion in a rat model of neuroinflammation: implications for functional neuroimaging.

Journal: EBioMedicine

Status: data only, 2 datasets cited

[16803] doi:10.1016/j.isci.2025.112761 [paper]

Critical impact of lysine 136 in TDP-43 phase separation, compartmentalization, and aggregation in living vertebrates.

Journal: iScience

Status: code on request

[16804] doi:10.1016/j.isci.2025.112767 [paper, repository]

Microendoscopic calcium imaging in motor cortices of macaques during rest and movement.

Journal: iScience

Authors' code: Zenodo 15346239 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[16805] doi:10.1021/jacs.4c09435 [paper, repository]

TRPM8 Protein Dynamics Correlates with Ligand Structure and Cellular Function.

Journal: Journal of the American Chemical Society

Authors' code: vanhornlab (no license)

Status: code verified

[16806] doi:10.1038/s41380-025-03061-6 [paper, data]

A neural substrate of comorbid depressive symptoms in alcohol use.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[16807] doi:10.1038/s41526-025-00476-x [paper, repository]

Adoption of microfluidic MEA technology for electrophysiology of 3D neuronal networks exposed to suborbital conditions.

Journal: NPJ microgravity

Authors' code: cortex-lab/phy (BSD-3-Clause)

Status: code verified, 165 files readable

[16808] doi:10.1038/s41551-025-01394-9 [paper, repository]

A wireless device for continuous measurement of brain parenchymal resistance tracks glymphatic function in humans.

Journal: Nature biomedical engineering

Authors' code: Zenodo 15059532 (CC-BY-4.0)

Status: code verified, 3 files readable, 6 matches

[16809] doi:10.1038/s41551-025-01409-5 [paper, repository]

The cerebellum shapes motions by encoding motor frequencies with precision and cross-individual uniformity.

Journal: Nature biomedical engineering

Authors' code: codeocean:8551138 (no license)

Status: code found, still to be checked

[16810] doi:10.1038/s41598-025-01703-x [paper, repository]

Spatial neglect after subcortical stroke may reflect cortico-cortical disconnection.

Journal: Scientific reports

Authors' code: neurolabusc/Cancel (BSD-2-Clause)

Status: code verified, 2 files readable

[16811] doi:10.1038/s42003-025-08248-9 [paper, data]

Differential neural decoding of alarm and avoidance information from vocal alarm calls in humans.

Journal: Communications biology

Status: code on request, 1 dataset cited

[16812] doi:10.1038/s43587-025-00873-7 [paper, data]

Body-to-brain insulin and Notch signaling regulates memory through neuronal CREB activity.

Journal: Nature aging

Status: data only, 1 dataset cited

[16813] doi:10.1038/s44319-025-00470-0 [paper, data]

Elevated TGF-β1 impairs synaptic and cognitive function through activation of Smad2/3-Sp1 pathway in AngII-related hypertension.

Journal: EMBO reports

Status: data only, 1 dataset cited

[16814] doi:10.1038/s44319-025-00484-8 [paper, data]

Palmitoylated importin α regulates mitotic spindle orientation through interaction with NuMA.

Journal: EMBO reports

Status: data only, 1 dataset cited

[16815] doi:10.1038/s44319-025-00486-6 [paper, data]

LRRK2 interactions with microtubules are independent of LRRK2-mediated Rab phosphorylation.

Journal: EMBO reports

Status: data only, 1 dataset cited

[16816] doi:10.1073/pnas.2416061122 [paper, data]

Evolution of the essential gene <i>MN1</i> during the macroevolutionary transition toward patterning the vertebrate hindbrain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[16817] doi:10.1073/pnas.2418176122 [paper, data]

Longitudinal associations between birth-to-six cortical growth and childhood neurocognitive function.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[16818] doi:10.1073/pnas.2420704122 [paper, data]

Stimulus representations in visual cortex shaped by spatial attention and microsaccades.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[16819] doi:10.1080/19490976.2025.2506843 [paper, repository]

Microbiome signatures of virulence in the oral-gut-brain axis influence Parkinson's disease and cognitive decline pathophysiology.

Journal: Gut microbes

Authors' code: sysbiomelab/meteor_pipeline (GPL-3.0)

Status: code verified, 7 files readable

[16820] doi:10.1093/braincomms/fcaf203 [paper, data]

Distinct changes in the morphology of cortical and subcortical grey matter associated with age-related hearing loss and tinnitus in the UK Biobank participants.

Journal: Brain communications

Status: data only, 2 datasets cited

[16821] doi:10.1101/2025.05.25.25326586 [paper, data]

Convergent large-scale network and local vulnerabilities underlie brain atrophy across Parkinson’s disease stages: a worldwide ENIGMA study

Journal: medRxiv (preprint)

Status: code on request, 1 dataset cited

[16822] doi:10.1101/2025.05.27.656336 [paper, repository]

Parallel and dynamic attention allocation during natural reading

Journal: bioRxiv (preprint)

Authors' code: yalipan666/Attention_in_Reading (no license)

Status: code verified, 54 files readable, 11 matches

[16823] doi:10.1111/jne.70050 [paper, repository]

Dynamic changes in Ccn3 expression across the limbic forebrain through the mouse estrous cycle and during lactation.

Journal: Journal of neuroendocrinology

Authors' code: lemur01/CountRNAScope (no license)

Status: code verified, 4 files readable

[16824] doi:10.1186/s12880-025-01712-2 [paper]

Machine learning decision support model construction for craniotomy approach of pineal region tumors based on MRI images.

Journal: BMC medical imaging

Status: code on request

[16825] doi:10.1242/dmm.052282 [paper, repository]

Altered huntingtin-chromatin interactions predict transcriptional and epigenetic changes in Huntington's disease.

Journal: Disease models & mechanisms

Authors' code: seth-ament/ament-carroll-collab (no license)

Status: code verified, 2 files readable

[16826] doi:10.1364/boe.555458 [paper]

SAFFusion: a saliency-aware frequency fusion network for multimodal medical image fusion.

Journal: Biomedical optics express

Status: code on request

[16827] doi:10.1371/journal.pcbi.1013059 [paper, repository]

Relating sparse and predictive coding to divisive normalization.

Journal: PLoS computational biology

Authors' code: yanbolian/Relating-Sparse-Predictive-Coding-to-Divisive-Normalization (no license), yanbolian/Unifying-Sparse-Predictive-Coding-Divisive-Normalization (no license)

Status: code verified, 8 files readable

[16828] doi:10.1371/journal.pcbi.1013086 [paper, repository]

The respiratory cycle modulates distinct dynamics of affective and perceptual decision-making.

Journal: PLoS computational biology

Authors' code: embodied-computation-group/tidal-computation (GPL-3.0)

Status: code verified, 20 files readable, 10 matches

[16829] doi:10.1371/journal.pone.0312981 [paper, data]

A measure of event-related potentials (ERP) indices of motivation during cycling.

Journal: PloS one

Status: data only, 1 dataset cited

[16830] doi:10.1371/journal.pone.0323098 [paper, repository]

Neuro-symbolic procedural semantics for explainable visual dialogue.

Journal: PloS one

Authors' code: satwikkottur/clevr-dialog (BSD-3-Clause)

Status: code verified, 7 files readable

[16831] doi:10.1371/journal.pone.0324345 [paper, data]

Late emergence of pathological oscillatory activity in the retina of the Retinitis pigmentosa model RCS (Royal College of Surgeons) rat.

Journal: PloS one

Status: data only, 1 dataset cited

[16832] doi:10.1503/jpn.250002 [paper, repository]

Familial risk of major mood disorders and brain functional connectivity in the default mode, cognitive executive, and salience networks.

Journal: Journal of psychiatry & neuroscience : JPN

Authors' code: forbow-lab/neuro-structural-pipeline (no license)

Status: code verified, 28 files readable

[16833] doi:10.1523/eneuro.0043-25.2025 [paper, repository]

Caliber of Rohon-Beard Touch-Sensory Axons Is Dynamic In Vivo.

Journal: eNeuro

Authors' code: katieching/CaliberAnalysis (no license)

Status: code verified, 1 file readable, 1 match

[16834] doi:10.21037/tcr-24-1988 [paper, data]

Identification of neuronal synapse-related signatures and potential therapeutic drugs in colorectal cancer based on machine learning algorithms and molecular docking.

Journal: Translational cancer research

Status: data only, 1 dataset cited

[16835] doi:10.2147/pgpm.s488314 [paper, repository]

Associations Between <i>FTO</i> Polymorphisms and Neuroblastoma Risk in Chinese Children.

Journal: Pharmacogenomics and personalized medicine

Authors' code: dovepress.com/article/supplementary_file (no license)

Status: code verified

[16836] doi:10.3389/fnagi.2025.1584115 [paper, repository]

Protocol of a randomized, single-blind, controlled trial of an 18-month, home-based, high-intensity, exercise intervention in older, cognitively unimpaired <i>APOE</i> ε4 carriers.

Journal: Frontiers in aging neuroscience

Authors' code: compimg/lst-ai (MIT)

Status: code verified, 31 files readable, 1 match

[16837] doi:10.3389/fneur.2025.1540923 [paper, repository]

Deep learning-based automated segmentation for the quantitative diagnosis of cerebral small vessel disease via multisequence MRI.

Journal: Frontiers in neurology

Authors' code: HYZimLic/MO-UNET (no license)

Status: code verified, 67 files readable, 9 matches

[16838] doi:10.3390/cells14110788 [paper, repository]

Molecular Fingerprint of Endocannabinoid Signaling in the Developing Paraventricular Nucleus of the Hypothalamus as Revealed by Single-Cell RNA-Seq and In Situ Hybridization.

Journal: Cells

Authors' code: EugOT/eCB-hypothalamus-development (no license), figshare 28816100 (CC-BY-4.0)

Status: code verified, 88 files readable, 3 matches

[16839] doi:10.3390/metabo15060354 [paper, repository]

SMQVP: A Web Application for Spatial Metabolomics Quality Visualization and Processing.

Journal: Metabolites

Authors' code: mzlab-research/SMQVP (no license)

Status: code verified, 24 files readable, 8 matches

[16840] doi:10.7150/ijbs.103194 [paper, repository]

Radio-chemotherapy and metformin selectively modulate the heterogeneous landscape of glioma with ribosome biogenesis, long non coding RNA and immune-escape markers as major player.

Journal: International journal of biological sciences

Authors' code: ste-depo/scRNA_2024_mouse_glioma (no license)

Status: code verified, 4 files readable, 3 matches

[16841] doi:10.7554/elife.103328 [paper, data]

An antisense oligonucleotide-based strategy to ameliorate cognitive dysfunction in the 22q11.2 Deletion Syndrome.

Journal: eLife

Status: data only, 1 dataset cited

[16842] doi:10.7554/elife.105714 [paper, repository]

Integration of head and body orientations in the macaque superior temporal sulcus is stronger for upright bodies.

Journal: eLife

Authors' code: Yozafirova/head-body-orientation-interaction (MIT)

Status: code verified, 30 files readable, 1 match

Monday, 26 May 2025 (26 papers)

[16843] doi:10.1002/mds.30229 [paper, repository]

Distinct Longitudinal Clinical-Neuroanatomical Trajectories in Parkinson's Disease Clinical Subtypes: Insight toward Precision Medicine.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: VANDAlab/Preprocessing_Pipeline (no license)

Status: code verified, 11 files readable, 2 matches

[16844] doi:10.1007/s00221-025-07099-4 [paper]

Exploring the cortical involvement in sensorimotor integration during early stages of independent walking.

Journal: Experimental brain research

Status: code on request

[16845] doi:10.1016/j.isci.2025.112746 [paper]

The transcription factor ZFP64 promotes activity-dependent synapse elimination during postnatal cerebellar development.

Journal: iScience

Status: code on request

[16846] doi:10.1016/j.isci.2025.112747 [paper]

Volume electron microscopy reveals 3D synaptic nanoarchitecture in postmortem human prefrontal cortex.

Journal: iScience

Status: code on request

[16847] doi:10.1016/j.isci.2025.112755 [paper, repository]

Decoding olfactory bulb output: A behavioral assessment of rate, synchrony, and respiratory phase coding.

Journal: iScience

Authors' code: doi:10.5061/dryad.3tx95x6t8 (no license), cortex-lab/phy (BSD-3-Clause)

Status: code verified, 165 files readable, 1 match

[16848] doi:10.1016/j.tjpad.2025.100208 [paper, data]

Association of multimorbidity and disease clusters with neuroimaging and cognitive outcomes in UK Biobank.

Journal: The journal of prevention of Alzheimer's disease

Status: data only, 1 dataset cited

[16849] doi:10.1016/j.xgen.2025.100890 [paper, repository]

Early establishment and life course stability of sex biases in the human brain transcriptome.

Journal: Cell genomics

Authors' code: cbenoitp/sexDE_prenatal_brain (no license), Zenodo 15039762 (CC-BY-4.0), COMBINE-lab/salmon (BSD-3-Clause)

Status: code verified, 188 files readable, 8 matches

[16850] doi:10.1038/s41386-025-02133-z [paper]

FGF21 analogue PF-05231023 on alcohol consumption and neuronal activity in the nucleus accumbens.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: code on request

[16851] doi:10.1038/s41467-025-59342-9 [paper, repository]

Cortical circuits for cross-modal generalization.

Journal: Nature communications

Authors' code: comp-neural-circuits/Guyoton-Matteucci-etal-2025 (MIT), Zenodo 14712478 (CC-BY-4.0)

Status: code verified, 8 files readable, 4 matches

[16852] doi:10.1038/s41467-025-59949-y [paper, repository]

Whole-genome sequencing analyses suggest novel genetic factors associated with Alzheimer's disease and a cumulative effects model for risk liability.

Journal: Nature communications

Authors' code: FelixKrueger/TrimGalore (GPL-3.0), joonan-lab/cwas (MIT), wonlab101/K-ROAD_Alzheimer_WGS (no license), mhguo1/AD_STR (MIT), rajlabmssm/downstream-qtl (no license), RajLabMSSM/QTL-mapping-pipeline (no license), Zenodo 15189321 (CC-BY-4.0)

Status: code verified, 298 files readable, 27 matches

[16853] doi:10.1038/s41467-025-60155-z [paper, data]

An engineered U7 small nuclear RNA scaffold greatly increases ADAR-mediated programmable RNA base editing.

Journal: Nature communications

Status: data only, 1 dataset cited

[16854] doi:10.1038/s41597-025-04847-7 [paper, data]

The Dallas Lifespan Brain Study: A Comprehensive Adult Lifespan Data Set of Brain and Cognitive Aging.

Journal: Scientific data

Status: data only, 2 datasets cited

[16855] doi:10.1038/s41598-025-00736-6 [paper, data]

Metacontrol-related aperiodic neural activity decreases but strategic adjustment thereof increases from childhood to adulthood.

Journal: Scientific reports

Status: data only, 1 dataset cited

[16856] doi:10.1038/s41598-025-03723-z [paper, data]

Neural correlates of conspiracy beliefs during information evaluation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[16857] doi:10.1038/s42003-025-08155-z [paper, repository]

Burst of gyrification in the human brain after birth.

Journal: Communications biology

Authors' code: MecaLab/2025_folding_birth (MIT)

Status: code verified, 6 files readable, 2 matches

[16858] doi:10.1038/s42003-025-08260-z [paper, data]

The functional overlap between respiration and global signal and its behavioral relevance.

Journal: Communications biology

Status: code on request, 1 dataset cited

[16859] doi:10.1038/s43018-025-00964-9 [paper, data]

Cellular hierarchies of embryonal tumors with multilayered rosettes are shaped by oncogenic microRNAs and receptor-ligand interactions.

Journal: Nature cancer

Status: data only, 1 dataset cited

[16860] doi:10.1080/03639045.2025.2508845 [paper, data]

Storage and in-use stability of an excipient enhanced growth (EEG) synthetic lung surfactant powder formulation.

Journal: Drug development and industrial pharmacy

Status: data only, 1 dataset cited

[16861] doi:10.1186/s12859-025-06150-z [paper, repository]

CRISP: correlation-refined image segmentation process.

Journal: BMC bioinformatics

Authors' code: computational-cell-analytics/micro-sam (MIT), jenniferkbriggs/CRISP (MIT)

Status: code verified, 285 files readable, 2 matches

[16862] doi:10.1186/s12862-025-02398-4 [paper, data]

Brain-associated alterations of Hippo pathway transcription in early maturing Atlantic salmon.

Journal: BMC ecology and evolution

Status: data only, 2 datasets cited

[16863] doi:10.21203/rs.3.rs-6686597/v1 [paper, repository]

The relationship between neuropsychiatric dimensions and markers of Parkinson's disease risk in the UK Biobank

Journal: Research Square (preprint)

Authors' code: OSF vmabg (no license), OSF tq4fn (no license)

Status: code verified, 98 files readable

[16864] doi:10.3389/fgene.2025.1581625 [paper, data]

Case Report: Multiple cerebral infarctions in a patient with hereditary hemorrhagic telangiectasia following a fall.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[16865] doi:10.3389/fnsys.2025.1466809 [paper, repository]

Head posture control under perturbed conditions in progressive supranuclear palsy patients.

Journal: Frontiers in systems neuroscience

Authors' code: mcuf-idim/FRF-statistics (GPL-3.0)

Status: code verified, 13 files readable

[16866] doi:10.3390/biomedicines13061304 [paper, repository]

Multi-Transcriptomic Analysis Reveals GSC-Driven MES-Like Differentiation via EMT in GBM Cell-Cell Communication.

Journal: Biomedicines

Authors' code: theMILOlab/SPATA2 (gnu), Zenodo 22040374 (MIT)

Status: code verified, 91 files readable, 1 match

[16867] doi:10.3390/diagnostics15111327 [paper, data]

Computational Risk Stratification of Preclinical Alzheimer's in Younger Adults.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[16868] doi:10.7717/peerj-cs.2900 [paper, repository]

High-fidelity steganography in EEG signals using advanced transform-based methods.

Journal: PeerJ. Computer science

Authors' code: supp:PMC12192647/peerj-cs-11-2900-s001.zip (no license)

Status: code verified, 1 file readable, 3 matches

Sunday, 25 May 2025 (8 papers)

[16869] doi:10.1038/s41514-025-00228-x [paper, data]

Dysregulations of C1QA, C1QB, C1QC and C5AR1 as candidate biomarkers of vascular dementia.

Journal: npj aging

Status: data only, 1 dataset cited

[16870] doi:10.1038/s41598-025-02423-y [paper, repository]

EEG reveals the cognitive impact of polarized content in short video scenarios.

Journal: Scientific reports

Authors' code: anonymous.4open.science/r/eeg_and_explicit_feedback_for_opinion_polarization_detection-0e18 (no license)

Status: code found, still to be checked

[16871] doi:10.1038/s42003-025-08201-w [paper, repository]

Object fine-grained discrimination as a sensitive cognitive marker of transentorhinal integrity.

Journal: Communications biology

Authors' code: OSF a5v6k (no license)

Status: code verified, 5 files readable, 2 matches

[16872] doi:10.1038/s42003-025-08228-z [paper, repository]

Distinct brain age gradients across the adult lifespan reflect diverse neurobiological hierarchies.

Journal: Communications biology

Authors' code: OSF x8qp9 (no license), netneurolab/markello_spatialnulls (BSD-3-Clause)

Status: code verified, 43 files readable, 5 matches

[16873] doi:10.1038/s42003-025-08230-5 [paper]

The impact of spatial frequency on hierarchical category representation in macaque temporal cortex.

Journal: Communications biology

Status: code on request

[16874] doi:10.1101/2025.05.22.655469 [paper, repository]

Different functional connectivity gradients reflect aging and Alzheimer’s disease

Journal: bioRxiv (preprint)

Authors' code: DeMONLab-BioFINDER/fc_changes_follow_gradients (MIT)

Status: code verified, 16 files readable, 10 matches

[16875] doi:10.3390/ph18060794 [paper, repository]

Arecoline Triggers Psychostimulant Responses by Modulating the Intestinal Microbiota to Influence Neurotransmitter Levels and Digestive Enzyme Activity.

Journal: Pharmaceuticals (Basel, Switzerland)

Authors' code: QIIME2/q2-feature-classifier (BSD-3-Clause)

Status: code verified, 21 files readable, 2 matches

[16876] doi:10.7150/thno.109513 [paper]

KLK8/HGF/Met signaling pathway mediates diabetes-associated hippocampal neuroinflammation in male mice.

Journal: Theranostics

Status: data only

Saturday, 24 May 2025 (12 papers)

[16877] doi:10.1002/mrm.30547 [paper, repository]

Feasibility study of subject-specific, brain specific-absorption-rate maps retrieved from MRI data.

Journal: Magnetic resonance in medicine

Authors' code: DrJAMM/Image_Based_Subject_Specific_SAR (no license)

Status: code verified, 8 files readable

[16878] doi:10.1007/s41465-025-00329-1 [paper, data]

Task-Irrelevant Phase but not Contrast Variability Unlocks Generalization in Visual Perceptual Learning.

Journal: Journal of cognitive enhancement : towards the integration of theory and practice

Status: data only, 1 dataset cited

[16879] doi:10.1016/j.dcn.2025.101570 [paper, repository]

Prefrontal cortex intrinsic functional connectivity and executive function in early childhood and early adulthood using fNIRS.

Journal: Developmental cognitive neuroscience

Authors' code: OSF nxc2b (no license), OSF cmtyq (no license)

Status: code verified, 6 files readable, 7 matches

[16880] doi:10.1038/s41467-025-60122-8 [paper, repository]

New information triggers prospective codes to adapt for flexible navigation.

Journal: Nature communications

Authors' code: stephprince/update-project (MIT)

Status: code verified, 59 files readable, 26 matches

[16881] doi:10.1038/s41539-025-00327-0 [paper, data]

Unveiling the neural mechanisms of supernatural fiction comprehension using fNIRS.

Journal: NPJ science of learning

Status: code on request, 1 dataset cited

[16882] doi:10.1038/s41598-025-01989-x [paper]

Exploring voice as a digital phenotype in adults with ADHD.

Journal: Scientific reports

Status: code on request

[16883] doi:10.1038/s42003-025-08241-2 [paper]

Object-translocation induces event coding in the rat hippocampus.

Journal: Communications biology

Status: code on request

[16884] doi:10.1177/01939459251341814 [paper, repository]

Education Programs for Patients With Parkinson's Disease Receiving Deep Brain Stimulation: A Scoping Review.

Journal: Western journal of nursing research

Authors' code: figshare 1 (no license)

Status: dead link

[16885] doi:10.1177/11779322251342412 [paper]

Integrative Machine Learning Approach to Explore Glycosylation Signatures and Immune Landscape in Moyamoya Disease.

Journal: Bioinformatics and biology insights

Status: data only

[16886] doi:10.1186/s40478-025-02005-z [paper, data]

Viral-mediated knockdown of Atxn2 attenuates TDP-43 pathology and muscle dysfunction in the PFN1<sup>C71G</sup> ALS mouse model.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[16887] doi:10.17912/micropub.biology.001630 [paper, repository]

Valeric acid attracts <i>C. elegans</i> by activating the AWC neurons through a <i>tax-4</i> -dependent signaling pathway.

Journal: microPublication biology

Authors' code: Neuroplant-Resources/Neuroplant-OWL (no license)

Status: code verified, 7 files readable

[16888] doi:10.3390/diagnostics15111320 [paper, data]

Do LLMs Have 'the Eye' for MRI? Evaluating GPT-4o, Grok, and Gemini on Brain MRI Performance: First Evaluation of Grok in Medical Imaging and a Comparative Analysis.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 23 May 2025 (35 papers)

[16889] doi:10.1002/mrm.30575 [paper, repository]

Cross-site harmonization of diffusion MRI data without matched training subjects.

Journal: Magnetic resonance in medicine

Authors' code: delucaal/RISH-GLM (no license), pnlbwh/tbss (other)

Status: code verified, 153 files readable, 3 matches

[16890] doi:10.1007/s10565-025-10032-8 [paper, data]

IFI204 in microglia mediates traumatic brain injury-induced mitochondrial dysfunction and pyroptosis via SENP7 interaction.

Journal: Cell biology and toxicology

Status: data only, 1 dataset cited

[16891] doi:10.1007/s10753-025-02252-1 [paper]

High level expression of OSBPL11 is associated with atherosclerosis and Alzheimer's disease.

Journal: Inflammation

Status: data only

[16892] doi:10.1016/j.cub.2025.05.036 [paper, repository]

Divergence in neuronal signaling pathways despite conserved neuronal identity among Caenorhabditis species.

Journal: Current biology : CB

Authors' code: Zenodo 14205685 (CC-BY-4.0), davidemms/OrthoFinder (GPL-3.0), atarashansky/SAMap (MIT), thomasp85/scico (other)

Status: code verified, 109 files readable, 3 matches

[16893] doi:10.1021/acs.jcim.5c00295 [paper, data]

Targeting Glioblastoma Stem Cells via EphA2: Structural Insights into the RNA Aptamer A40s for Precision Therapy.

Journal: Journal of chemical information and modeling

Status: data only, 2 datasets cited

[16894] doi:10.1038/s41467-025-59728-9 [paper, repository]

The ALX4 dimer structure provides insight into how disease alleles impact function.

Journal: Nature communications

Authors' code: cainbn97/ALX4_footprinting_analysis (MIT), Zenodo 14962844 (MIT)

Status: code verified, 7 files readable, 4 matches

[16895] doi:10.1038/s41467-025-60064-1 [paper, repository]

Massively parallel reporter assays and mouse transgenic assays provide correlated and complementary information about neuronal enhancer activity.

Journal: Nature communications

Authors' code: ENCODE-DCC (no license), lotard/mpravista (no license), Zenodo 15353561 (CC-BY-4.0)

Status: code verified, 27 files readable, 15 matches

[16896] doi:10.1038/s41467-025-60164-y [paper, repository]

A physics-informed and data-driven framework for robotic welding in manufacturing.

Journal: Nature communications

Authors' code: figshare 28829318 (MIT), iVPPA/PHOENIX (MIT)

Status: code verified, 8 files readable, 8 matches

[16897] doi:10.1038/s41597-025-04833-z [paper, repository]

Open multi-center intracranial electroencephalography dataset with task probing conscious visual perception.

Journal: Scientific data

Authors' code: Cogitate-consortium/cogitate-experiment-code (MIT), Cogitate-consortium/iEEG-data-release (MIT), Zenodo 13832169 (CC-BY-4.0), Zenodo 19019866 (CC-BY-4.0), Zenodo 19019151 (CC-BY-4.0), Zenodo 19037899 (CC-BY-4.0), Zenodo 19019150 (CC-BY-4.0), Zenodo 19029562 (CC-BY-4.0)

Status: code verified, 70 files readable, 9 matches

[16898] doi:10.1038/s41598-025-02316-0 [paper, data]

Investigating the causal role of motor brain areas in rhythm reproduction: a transcranial direct current stimulation study.

Journal: Scientific reports

Status: data only, 1 dataset cited

[16899] doi:10.1038/s41598-025-02452-7 [paper, data]

Automated depression detection via cloud based EEG analysis with transfer learning and synchrosqueezed wavelet transform.

Journal: Scientific reports

Status: data only, 2 datasets cited

[16900] doi:10.1038/s41598-025-02793-3 [paper, repository]

Optimal approximate computation of Euclidean distance in spiking neural P systems framework.

Journal: Scientific reports

Authors' code: iTseren-Onolt/musteucl4 (no license)

Status: empty repository, 1 file readable

[16901] doi:10.1038/s42003-025-08079-8 [paper, repository]

Three-photon in vivo imaging of neurons and glia in the medial prefrontal cortex with sub-cellular resolution.

Journal: Communications biology

Authors' code: FabrizioMusacchio/MotilA (GPL-3.0), Zenodo 15175054 (GPL-3.0)

Status: code verified, 35 files readable, 1 match

[16902] doi:10.1038/s44298-025-00121-0 [paper, repository]

Enhanced neurotropism of bovine H5N1 compared to the Vietnam H5N1 isolate in C57BL/6J mice.

Journal: Npj viruses

Authors' code: IDSS-NIAID/2024-H5N1-comparisons-in-mice (no license)

Status: code verified, 2 files readable, 4 matches

[16903] doi:10.1073/pnas.2417788122 [paper, repository]

Neuron-astrocyte associative memory.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: kozleo/naam (no license)

Status: code verified, 33 files readable

[16904] doi:10.1073/pnas.2418218122 [paper, repository]

The cortical critical power law balances energy and information in an optimal fashion.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: tatsukawa/power-law-fisher-info (MIT)

Status: code verified, 5 files readable

[16905] doi:10.1093/braincomms/fcaf175 [paper, repository]

Evidence that minocycline treatment confounds the interpretation of neurofilament as a biomarker.

Journal: Brain communications

Authors' code: ericminikel/mino (CC-BY-4.0)

Status: code verified, 8 files readable, 6 matches

[16906] doi:10.1093/braincomms/fcaf200 [paper, repository]

Brain glymphatic fluid mapping in Alzheimer's disease: a human MRI and PET study.

Journal: Brain communications

Authors' code: Haoyulance/WPSS (other), jinghangli98/wmh_seg (no license)

Status: code verified, 22 files readable, 1 match

[16907] doi:10.1093/braincomms/fcaf202 [paper, repository]

A compilation of reported alterations in the cerebrospinal fluid proteome in Alzheimer's disease.

Journal: Brain communications

Authors' code: ACTRU/CSF-Proteomics-Compilation (no license)

Status: code verified, 1 file readable, 5 matches

[16908] doi:10.1101/2025.05.21.655297 [paper, data]

Diencephalic integrity explains aspects of hippocampal amnesia

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[16909] doi:10.1101/2025.05.21.655312 [paper, repository]

Prelimbic cortical excitatory overdrive and inhibitory underdrive accompany environmental suppression of food seeking

Journal: bioRxiv (preprint)

Authors' code: mccutcheonlab/trompy (MIT)

Status: code verified, 38 files readable

[16910] doi:10.1126/sciadv.adr6940 [paper, data]

Immune cell infiltration into brain tumor microenvironment is mediated by Rab27-regulated vascular wall integrity.

Journal: Science advances

Status: data only, 1 dataset cited

[16911] doi:10.1126/sciadv.adt3063 [paper, repository]

Event cache: An independent component in working memory.

Journal: Science advances

Authors' code: OSF ntfjz (no license)

Status: code verified, 6 files readable

[16912] doi:10.1186/s13550-025-01253-3 [paper, repository]

Non-invasive arterial input function estimation using an MRA atlas and machine learning.

Journal: EJNMMI research

Authors' code: supp:PMC12102434/13550_2025_1253_MOESM2_ESM.ipynb (no license), supp:PMC12102434/13550_2025_1253_MOESM3_ESM.m (no license)

Status: code verified, 2 files readable, 2 matches

[16913] doi:10.1371/journal.pbio.3003189 [paper, repository]

Predictable motion is progressively extrapolated across temporally distinct processing stages in the human visual cortex.

Journal: PLoS biology

Authors' code: OSF sn4a7 (no license), bootstrapbill/neural-location-decoding (BSD-3-Clause), Zenodo 15283636 (BSD-3-Clause)

Status: code verified, 49 files readable, 17 matches

[16914] doi:10.1371/journal.pcbi.1013023 [paper, repository]

BlueRecording: A pipeline for the efficient calculation of extracellular recordings in large-scale neural circuit models.

Journal: PLoS computational biology

Authors' code: Zenodo 11113043 (CC-BY-NC-4.0), BlueBrain/neurodamus-models (Apache-2.0), BlueBrain/sonata-extension (Apache-2.0), BlueBrain/neurodamus (Apache-2.0), BlueBrain/BlueBrainHeadModels (Apache-2.0), Zenodo 10926947 (cc-by-nc-sa-2.0), Zenodo 14419388 (CC-BY-4.0), BlueBrain/BlueRecording (GPL-3.0)

Status: code verified, 598 files readable, 8 matches

[16915] doi:10.1371/journal.pone.0322607 [paper, data]

Leveraging transformers and explainable AI for Alzheimer's disease interpretability.

Journal: PloS one

Status: data only, 2 datasets cited

[16916] doi:10.1371/journal.pone.0323276 [paper, repository]

Appropriate data segmentation improves speech encoding models: Analysis and simulation of electrophysiological recordings.

Journal: PloS one

Authors' code: OleBialas/stationarity (no license)

Status: code verified, 14 files readable, 2 matches

[16917] doi:10.1371/journal.pone.0324103 [paper, data]

The mind & muscles: Introducing a validated EEG/EMG protocol for recording cognitive-muscular interactions in experimental archaeology.

Journal: PloS one

Status: data only, 1 dataset cited

[16918] doi:10.21203/rs.3.rs-6678778/v1 [paper, repository]

Fish Oil-Derived Fatty Acids in Pregnancy and Brain Metabolism in Middle Childhood: Results From a Randomized Controlled Trial

Journal: Research Square (preprint)

Authors' code: MarkVestergaard/PCMCalculator (MIT), MarkVestergaard/SBOCalculator (MIT)

Status: code verified, 6 files readable, 2 matches

[16919] doi:10.3389/fnins.2025.1511972 [paper, repository]

Does neural computation feel like something?

Journal: Frontiers in neuroscience

Authors' code: modeldb:2018266 (no license)

Status: code verified

[16920] doi:10.3389/fnins.2025.1593854 [paper, data]

Bidirectional modulation of Alzheimer's disease via gut microbiota: rescue by fecal transplantation from healthy donors and aggravation by colitis-associated dysbiosis.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[16921] doi:10.3390/ijerph22060824 [paper, data]

Neuroscientific Insights into the Built Environment: A Systematic Review of Empirical Research on Indoor Environmental Quality, Physiological Dynamics, and Psychological Well-Being in Real-Life Contexts.

Journal: International journal of environmental research and public health

Status: data only, 1 dataset cited

[16922] doi:10.3390/ijms26115023 [paper, repository]

Lifetime Variations of Prolactin Receptor Isoforms mRNA in the Hippocampus and Dentate Gyrus of the Rat-Effects of Aging.

Journal: International journal of molecular sciences

Authors' code: chaotix1992/IF-Grad (MIT)

Status: code verified, 5 files readable

[16923] doi:10.3390/ph18060775 [paper, data]

Huanglian Jiedu Decoction Treats Ischemic Stroke by Regulating Pyroptosis: Insights from Multi-Omics and Drug-Target Relationship Analysis.

Journal: Pharmaceuticals (Basel, Switzerland)

Status: data only, 1 dataset cited

Thursday, 22 May 2025 (34 papers)

[16924] doi:10.1016/j.isci.2025.112730 [paper]

Visual gaze bias motion detection by split eyes in miniature whiteflies.

Journal: iScience

Status: code on request

[16925] doi:10.1016/j.stemcr.2025.102508 [paper, data]

A zinc finger-dependent, PRDM13-driven mechanism regulates retinal progenitor cell fate from mouse embryonic stem cells via WNT signaling.

Journal: Stem cell reports

Status: code on request, 1 dataset cited

[16926] doi:10.1016/j.xgen.2025.100886 [paper, repository]

CellWalker2: Multi-omic discovery using hierarchical cell type relationships.

Journal: Cell genomics

Authors' code: pfprzytycki/cellwalkr (GPL-2.0), Zenodo 15106832 (CC-BY-4.0), xyz111131/cellwalker2_supple_codes (no license), aertslab/scenicplus (other), gao-lab/GLUE (MIT), Oshlack/splatter (GPL-3.0)

Status: code verified, 559 files readable, 40 matches

[16927] doi:10.1016/j.xpro.2025.103835 [paper]

Protocol for designing, conducting, and analyzing event-related potentials in human participants.

Journal: STAR protocols

Status: code on request

[16928] doi:10.1017/s0033291725000832 [paper, data]

Shared genetics and causal relationship between sociability and the brain's default mode network.

Journal: Psychological medicine

Status: data only, 1 dataset cited

[16929] doi:10.1038/s41467-025-59838-4 [paper, data]

The patient-specific mouse model with Foxg1 frameshift mutation provides insights into the pathophysiology of FOXG1 syndrome.

Journal: Nature communications

Status: data only, 1 dataset cited

[16930] doi:10.1038/s41467-025-59839-3 [paper, repository]

Deep MALDI-MS spatial omics guided by quantum cascade laser mid-infrared imaging microscopy.

Journal: Nature communications

Authors' code: CeMOS-Mannheim/QCL_MIR_guided_MSI (MIT)

Status: code verified, 26 files readable, 6 matches

[16931] doi:10.1038/s41467-025-59971-0 [paper, data]

FcRn-silencing of IL-12Fc prevents toxicity of local IL-12 therapy and prolongs survival in experimental glioblastoma.

Journal: Nature communications

Status: data only, 4 datasets cited

[16932] doi:10.1038/s41467-025-60022-x [paper, repository]

Expanding the landscape of aging via orbitrap astral mass spectrometry and tandem mass tag integration.

Journal: Nature communications

Authors' code: figshare 28016501 (CC-BY-4.0)

Status: code verified, 19 files readable, 4 matches

[16933] doi:10.1038/s41467-025-60074-z [paper, repository]

Glioma-neuronal circuit remodeling induces regional immunosuppression.

Journal: Nature communications

Authors' code: t-nejo/Glioma-neuron-immune-crosstalk (no license)

Status: code verified, 28 files readable, 17 matches

[16934] doi:10.1038/s41467-025-60089-6 [paper, repository]

Convergent mapping of a tremor treatment network.

Journal: Nature communications

Authors' code: netstim/leaddbs (GPL-3.0)

Status: code verified, 2,000 files readable, 3 matches

[16935] doi:10.1038/s41593-025-01955-w [paper, repository]

Microglia activation orchestrates CXCL10-mediated CD8<sup>+</sup> T cell recruitment to promote aging-related white matter degeneration.

Journal: Nature neuroscience

Authors' code: Ruoqing-feng/Aging-Optic_nerve_MERFISH_scRNA-seq (no license), Zenodo 15064255 (CC-BY-4.0)

Status: code verified, 4 files readable, 5 matches

[16936] doi:10.1038/s41597-025-04932-x [paper, data]

7 Tesla multimodal MRI dataset of ex-vivo human brain.

Journal: Scientific data

Status: data only, 1 dataset cited

[16937] doi:10.1038/s41597-025-05209-z [paper, repository]

Cognitive Electrophysiology in Socioeconomic Context in Adulthood.

Journal: Scientific data

Authors' code: OSF 43h75 (no license)

Status: code verified, 34 files readable, 5 matches

[16938] doi:10.1038/s41598-025-02977-x [paper, data]

GliaTrap is a biodegradable, non-swelling and non-inflammatory hydrogel with tuned release of CXCL12 to attract migrating glioblastoma cells.

Journal: Scientific reports

Status: data only, 1 dataset cited

[16939] doi:10.1038/s41598-025-03076-7 [paper, repository]

Open-source magnetic system for wireless neuromodulations in vitro and for untethered brain stimulation in vivo.

Journal: Scientific reports

Authors' code: phclab/magnetic_system (no license)

Status: code verified, 14 files readable, 8 matches

[16940] doi:10.1038/s42003-025-08165-x [paper, repository]

Early life stress impairs hippocampal subfield myelination.

Journal: Communications biology

Authors' code: OSF 8hte3 (no license), khanlab/hippunfold (MIT)

Status: code verified, 68 files readable, 2 matches

[16941] doi:10.1097/aud.0000000000001673 [paper, data]

Assessing Array-Type Differences in Cochlear Implant Users Using the Panoramic ECAP Method.

Journal: Ear and hearing

Status: data only, 1 dataset cited

[16942] doi:10.1101/2025.05.19.25327707 [paper, repository]

FLAMeS: A Robust Deep Learning Model for Automated Multiple Sclerosis Lesion Segmentation

Journal: medRxiv (preprint)

Authors' code: huggingface.co/spaces/francescolr/flames (CC-BY-4.0)

Status: code verified, 2 files readable, 2 matches

[16943] doi:10.1126/science.adn9850 [paper, repository]

Type 2 cytokines act on enteric sensory neurons to regulate neuropeptide-driven host defense.

Journal: Science (New York, N.Y.)

Authors' code: doi:10.6084/m9.figshare.c.7716548 (no license)

Status: code found, still to be checked

[16944] doi:10.1162/imag.a.11 [paper, repository]

Effector-dependent neural representations of perceptual decisions independent of motor actions and sensory modalities.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: marlones95/vDMTC (no license)

Status: code verified, 19 files readable, 6 matches

[16945] doi:10.1162/imag.a.5 [paper, repository]

Dynamic network features of functional and structural brain networks support visual working memory in aging adults.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: McIntosh-Lab/dFC_Cam-CAN (Apache-2.0)

Status: code verified, 142 files readable, 11 matches

[16946] doi:10.1162/imag.a.7 [paper]

The effect of prolonged elbow pain and rTMS on TMS-evoked potentials: A TMS-EEG study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[16947] doi:10.1162/imag.a.8 [paper, repository]

Source reconstruction without an MRI using optically pumped magnetometer-based magnetoencephalography.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: nsrhodes/template_warping (no license)

Status: code verified, 14 files readable, 3 matches

[16948] doi:10.1186/s40001-025-02642-z [paper, data]

Identification of shared mechanisms between Alzheimer's disease and atherosclerosis by integrated bioinformatics analysis.

Journal: European journal of medical research

Status: data only, 1 dataset cited

[16949] doi:10.12688/f1000research.160304.2 [paper, data]

A highly sensitive enzyme‑linked immunosorbent assay allows accurate measurements of brain‑derived neurotrophic factor levels in human saliva.

Journal: F1000Research

Status: data only, 1 dataset cited

[16950] doi:10.1371/journal.pcbi.1013053 [paper, repository]

Expectation generation and its effect on subsequent pain and visual perception.

Journal: PLoS computational biology

Authors' code: rotemb9/PPRI-paper (MIT)

Status: code verified, 25 files readable, 12 matches

[16951] doi:10.1371/journal.pcbi.1013126 [paper, repository]

Interleaved single and bursting spiking resonance in neurons.

Journal: PLoS computational biology

Authors' code: rodrigo-pena-lab/interleaved_resonance (no license)

Status: code verified, 2 files readable

[16952] doi:10.1371/journal.pone.0311075 [paper, data]

Filter bank common spatial pattern and envelope-based features in multimodal EEG-fTCD brain-computer interfaces.

Journal: PloS one

Status: data only, 1 dataset cited

[16953] doi:10.3389/fphar.2025.1580055 [paper, data]

Polygoni Multiflori Radix Praeparata polysaccharides enhance gut health and mitigate ischemic stroke by regulating SCFA and amino acid metabolism in gut microbiota.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[16954] doi:10.3390/biology14060589 [paper, data]

<i>Periplaneta americana</i> (L.) Extract PAS840 Promotes Ischemic Stroke Recovery by Inhibiting Inflammasome Activation.

Journal: Biology

Status: data only, 2 datasets cited

[16955] doi:10.3390/brainsci15060544 [paper]

Resting Electroencephalography Microstates and Alpha Power Modulation in Preschool-Aged Children with Autism Spectrum Disorder.

Journal: Brain sciences

Status: code on request

[16956] doi:10.3390/brainsci15060546 [paper, data]

The Differential and Interactive Effects of Aging and Mental Fatigue on Alpha Oscillations: A Resting-State Electroencephalography Study.

Journal: Brain sciences

Status: data only, 1 dataset cited

[16957] doi:10.7554/elife.95272 [paper, repository]

Subcortical correlates of consciousness with human single neuron recordings.

Journal: eLife

Authors' code: michael.pereira/subcortical-ncc (BSD-3-Clause)

Status: code verified, 37 files readable, 5 matches

Wednesday, 21 May 2025 (53 papers)

[16958] doi:10.1007/s10162-025-00992-3 [paper]

Frequency Following Responses to Electric Cochlear Stimulation in an Animal Model.

Journal: Journal of the Association for Research in Otolaryngology : JARO

Status: code on request

[16959] doi:10.1016/j.bj.2025.100871 [paper, data]

BrainView: A cloud-based deep learning system for brain image segmentation, tumor detection and visualization.

Journal: Biomedical journal

Status: data only, 2 datasets cited

[16960] doi:10.1016/j.cell.2025.04.032 [paper, repository]

Serotonin transporter inhibits antitumor immunity through regulating the intratumoral serotonin axis.

Journal: Cell

Authors' code: ncborcherding/utility (CC-BY-NC-4.0)

Status: code verified, 35 files readable, 5 matches

[16961] doi:10.1016/j.celrep.2025.115746 [paper, repository]

Division of labor among H3K4 methyltransferases defines distinct facets of homeostatic plasticity.

Journal: Cell reports

Authors' code: umich-iwase-lab/2024_KMT2s_synaptic_scaling (no license)

Status: code verified, 5 files readable, 2 matches

[16962] doi:10.1016/j.crmeth.2025.101054 [paper]

An AAV capsid proposed as microglia-targeting directs genetic expression in forebrain excitatory neurons.

Journal: Cell reports methods

Status: code on request

[16963] doi:10.1016/j.isci.2025.112705 [paper]

Acute dietary methionine restriction triggers cell cycle arrest and reversible growth defects in the neocortex.

Journal: iScience

Status: code on request

[16964] doi:10.1016/j.isci.2025.112725 [paper, repository]

Organization and development of bilateral somatosensory feedback projections in mice.

Journal: iScience

Authors' code: Zenodo 3924619 (other-open), ClearAnatomics/ClearMap (GPL-3.0), DeNardoLab/DeepTraCE (GPL-3.0), christophkirst/clearmap2 (GPL-3.0)

Status: code verified, 1,615 files readable

[16965] doi:10.1016/j.neuroimage.2025.121288 [paper]

Parietal cortex is recruited by frontal and cingulate areas to support action monitoring and updating during stopping.

Journal: NeuroImage

Status: code on request

[16966] doi:10.1016/j.omtm.2025.101494 [paper, repository]

Common AAV gene therapy vectors show nonselective transduction of <i>ex vivo</i> human brain tissue.

Journal: Molecular therapy. Methods & clinical development

Authors' code: jpmcginnis/HumanAAVProject (no license)

Status: code verified, 6 files readable

[16967] doi:10.1016/j.xgen.2025.100879 [paper, repository]

Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex.

Journal: Cell genomics

Authors' code: ytanaka-bio/cisMultiDeep (no license), Zenodo 15243865 (CC-BY-4.0), AllenInstitute/PeakRankR (BSD-2-Clause), Zenodo 15243876 (CC-BY-4.0), aertslab/CREsted (other), Zenodo 15238527 (MIT), Zenodo 19105786 (MIT)

Status: code verified, 201 files readable, 14 matches

[16968] doi:10.1016/j.xpro.2025.103836 [paper, repository]

Protocol to isolate dorsal root ganglion neurons from embryonic rats by immunopanning and characterize them using RNAscope and immunofluorescence.

Journal: STAR protocols

Authors' code: muellerflorian/fish_quant (no license)

Status: code verified, 482 files readable, 2 matches

[16969] doi:10.1038/s41398-025-03392-6 [paper, repository]

Computational modelling and neural correlates of reinforcement learning following three-week escitalopram: a double-blind, placebo-controlled semi-randomised study.

Journal: Translational psychiatry

Authors' code: RudolfCardinal/rlib (Apache-2.0)

Status: code verified, 57 files readable, 4 matches

[16970] doi:10.1038/s41420-025-02517-6 [paper, data]

Androgen receptor inhibition sensitizes glioblastoma stem cells to temozolomide by the miR-1/miR-26a-1/miR-487b signature mediated WT1 and FOXA1 silencing.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[16971] doi:10.1038/s41467-025-59954-1 [paper, data]

Corticothalamic neurons in motor cortex have a permissive role in motor execution.

Journal: Nature communications

Status: code on request, 1 dataset cited

[16972] doi:10.1038/s41586-025-09028-5 [paper, repository]

Closed-loop vagus nerve stimulation aids recovery from spinal cord injury.

Journal: Nature

Authors' code: davepruitt/RePlay (GPL-3.0)

Status: empty repository, 2 files readable

[16973] doi:10.1038/s41598-025-01431-2 [paper, repository]

A multiscale brain emulation-based artificial intelligence framework for dynamic environments.

Journal: Scientific reports

Authors' code: alibaba/orangutan (no license)

Status: code verified, 78 files readable, 6 matches

[16974] doi:10.1038/s41598-025-01749-x [paper, repository]

Unsupervised post-training learning in spiking neural networks.

Journal: Scientific reports

Authors' code: Research-lab-KUMS/SNN_TripletSTDP_STP (no license)

Status: code verified, 11 files readable, 3 matches

[16975] doi:10.1038/s41598-025-02098-5 [paper, repository]

Medication versus globus pallidus internus deep brain stimulation in Parkinson's disease with deep learning video analysis of finger tapping.

Journal: Scientific reports

Authors' code: microsoft/MeshGraphormer (MIT), mi2rl/FingerTappingMotionAnalysis (MIT)

Status: code verified, 47 files readable, 2 matches

[16976] doi:10.1038/s41598-025-02209-2 [paper, data]

An automated deep learning framework for brain tumor classification using MRI imagery.

Journal: Scientific reports

Status: data only, 1 dataset cited

[16977] doi:10.1038/s41598-025-99758-3 [paper, data]

Utilizing rewards to dampen fear and its recovery.

Journal: Scientific reports

Status: data only, 2 datasets cited

[16978] doi:10.1038/s42003-025-08170-0 [paper, data]

Modified specific components of conspecific advertisement calls influence behavioral and neural responses in music frogs.

Journal: Communications biology

Status: data only, 1 dataset cited

[16979] doi:10.1038/s42003-025-08176-8 [paper]

Neurofeedback modulation of insula activity via MEG-based brain-machine interface: a double-blind randomized controlled crossover trial.

Journal: Communications biology

Status: code on request

[16980] doi:10.1038/s42003-025-08212-7 [paper, repository]

Neurogenetic phenotypes of learning-dependent plasticity for improved perceptual decisions.

Journal: Communications biology

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 2 matches

[16981] doi:10.1038/s42003-025-08216-3 [paper, repository]

Anterior-posterior systematic deficits of cortical thickness in early-onset schizophrenia.

Journal: Communications biology

Authors' code: Yun-Shuang/Structural-covariance-gradient-SZ (no license), scottclowe/cbrewer2 (Apache-2.0)

Status: code verified, 13 files readable, 2 matches

[16982] doi:10.1093/braincomms/fcaf195 [paper, repository]

Delineating network integration and segregation in the pathophysiology of functional neurological disorder.

Journal: Brain communications

Authors' code: FND-RG-Lab/NetworkIntegrationSegregation (no license)

Status: code verified, 5 files readable, 2 matches

[16983] doi:10.1093/nsr/nwaf152 [paper]

Medial preoptic CCKAR mediates anxiety and aggression induced by chronic emotional stress in male mice.

Journal: National science review

Status: code on request

[16984] doi:10.1101/2025.05.16.654560 [paper, repository]

GEM-pRF: GPU-Empowered Mapping of Population Receptive Fields for Large-Scale fMRI Analysis

Journal: bioRxiv (preprint)

Authors' code: vistalab/prfmodel (MIT)

Status: code verified, 190 files readable, 3 matches

[16985] doi:10.1101/2025.05.19.653958 [paper, repository]

Differential patterns of cortical expansion in fetal and preterm brain development

Journal: bioRxiv (preprint)

Authors' code: marianaftsilva/cortical-growth (no license)

Status: code verified, 3 files readable

[16986] doi:10.1101/2025.05.19.654889 [paper, data]

Sound offset responses become highly informative in the auditory cortex

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[16987] doi:10.1101/2025.05.21.654985 [paper, repository]

Transcranial magnetic vs intracranial electric stimulation: a direct comparison of their effects via scalp EEG recordings

Journal: bioRxiv (preprint)

Authors' code: renzocom/PCIst (GPL-3.0)

Status: code verified, 7 files readable, 1 match

[16988] doi:10.1111/sjop.13124 [paper, repository]

Working Memory Predicts Long-Term Recognition of Auditory Sequences: Dissociation Between Confirmed Predictions and Prediction Errors.

Journal: Scandinavian journal of psychology

Authors' code: gemmaferu/interactions-ltm-wm (no license)

Status: code verified, 2 files readable

[16989] doi:10.1126/sciadv.ads3393 [paper, repository]

Neuronal lipofuscinosis caused by Kufs disease/CLN4 DNAJC5 mutations but not by a CSPα/DNAJC5 deficiency.

Journal: Science advances

Authors' code: SLopezBegines/R_code (no license)

Status: code verified, 6 files readable, 1 match

[16990] doi:10.1126/sciadv.ads4970 [paper, repository]

Communication of perceptual predictions from the hippocampus to the deep layers of the parahippocampal cortex.

Journal: Science advances

Authors' code: SteenMoeller/NORDIC_Raw (other), OSF e6csa (no license)

Status: code verified, 7 files readable

[16991] doi:10.1126/sciadv.adv5651 [paper, repository]

Diversity of omission responses to visual images across brain-wide regions.

Journal: Science advances

Authors' code: Zenodo 15168496 (CC-BY-4.0)

Status: code verified, 12 files readable, 3 matches

[16992] doi:10.1162/imag.a.10 [paper, repository]

Demonstrating equivalence across magnetoencephalography scanner platforms using neural fingerprinting.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zoe-Tanner/Demonstrating-equivalence-across-magnetoencephalography-scanner-platforms (no license)

Status: empty repository, 1 file readable

[16993] doi:10.1162/imag_a_00565 [paper, repository]

An extended and improved CCFv3 annotation and Nissl atlas of the entire mouse brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: BlueBrain/Deep-Atlas (Apache-2.0), BlueBrain/ccfv3a-extended-atlas (Apache-2.0), BlueBrain/bbp-atlas-pipeline (Apache-2.0)

Status: code verified, 64 files readable, 5 matches

[16994] doi:10.1186/s13041-025-01197-8 [paper, repository]

Targeting CD74 in microglia to modulate experimental cerebral ischemia and reperfusion injury: insights from Single-Cell and bulk transcriptomics.

Journal: Molecular brain

Authors' code: immunogenomics/harmony (no license)

Status: code verified, 32 files readable, 1 match

[16995] doi:10.1186/s40478-025-02038-4 [paper, data]

Distinct characteristics of brain metastasis in lung adenocarcinoma: development of high-confidence cell lines.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[16996] doi:10.1371/journal.pcbi.1013116 [paper, repository]

Balancing prior knowledge and sensory data in a predictive coding model of coherent motion detection.

Journal: PLoS computational biology

Authors' code: nematiftm/SShPC (no license)

Status: code verified, 5 files readable

[16997] doi:10.1371/journal.pone.0323614 [paper, data]

Validation of a data-driven multicomponent T2 analysis for quantifying myelin content in the cuprizone mouse model of multiple sclerosis.

Journal: PloS one

Status: data only, 1 dataset cited

[16998] doi:10.1371/journal.pone.0323689 [paper, data]

Time-series visual representations for sleep stages classification.

Journal: PloS one

Status: data only, 1 dataset cited

[16999] doi:10.1503/jpn.230119 [paper, repository]

Hippocampal and amygdala subfield volumes in obsessive-compulsive disorder by medication status.

Journal: Journal of psychiatry & neuroscience : JPN

Authors' code: enigma.ini.usc.edu/ongoing/enigma-hippocampal-subfields (no license)

Status: code verified

[17000] doi:10.1523/jneurosci.1797-24.2025 [paper, repository]

Neocortical and Hippocampal Theta Oscillations Track Audiovisual Integration and Replay of Speech Memories.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF 4nh5w (no license)

Status: code found, still to be checked

[17001] doi:10.1523/jneurosci.2372-24.2025 [paper, repository]

EEG of the Dancing Brain: Decoding Sensory, Motor, and Social Processes during Dyadic Dance.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: felixbgd/dancing_brain (no license)

Status: code verified, 11 files readable, 3 matches

[17002] doi:10.1523/jneurosci.2430-24.2025 [paper, repository]

Functional Heterogeneity within the Primate Ventral Striatum for Motivational Regulation.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: ultralytics/yolov5 (AGPL-3.0)

Status: code verified, 64 files readable, 1 match

[17003] doi:10.21037/qims-24-1688 [paper, repository]

Can diffusion-based generated magnetic resonance images predict glioma methylation accurately?

Journal: Quantitative imaging in medicine and surgery

Authors' code: kaggle.com/c/rsna-miccai-brain-tumor-radiogenomic-classification (no license), FirasBaba/brain-tumor-radiogen (MIT)

Status: code verified, 10 files readable, 1 match

[17004] doi:10.3389/fnhum.2025.1599960 [paper, data]

Multi-branch GAT-GRU-transformer for explainable EEG-based finger motor imagery classification.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[17005] doi:10.3389/fnins.2025.1595847 [paper, data]

Expression and potential regulatory mechanism of cellular senescence-related genes in Alzheimer's disease based on single-cell and bulk RNA datasets.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[17006] doi:10.3390/biomimetics10050341 [paper, repository]

The <i>Drosophila</i> Connectome as a Computational Reservoir for Time-Series Prediction.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: EuropeanSpaceAgency/fly_connectome (no license)

Status: code verified, 8 files readable, 4 matches

[17007] doi:10.3390/ijms26104889 [paper, repository]

Effect of Corticosterone on Gene Expression in the Context of Global Hippocampal Transcription.

Journal: International journal of molecular sciences

Authors' code: sourceforge.net/jtreeview (no license)

Status: code verified

[17008] doi:10.7554/elife.100747 [paper, data]

Glutamine catabolism supports amino acid biosynthesis and suppresses the integrated stress response to promote photoreceptor survival.

Journal: eLife

Status: data only, 1 dataset cited

[17009] doi:10.7554/elife.96627 [paper, repository]

Spatial periodicity in grid cell firing is explained by a neural sequence code of 2-D trajectories.

Journal: eLife

Authors' code: dannenberglab/grid-cell-sequences (MIT), Hippocampome-Org/gridcell_metrics (MIT)

Status: code verified, 41 files readable, 5 matches

[17010] doi:10.7554/elife.96693 [paper, data]

Modeling hereditary diffuse leukoencephalopathy with axonal spheroids using microglia-sufficient brain organoids.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 20 May 2025 (32 papers, 14 on this page)

[17011] doi:10.1002/mrm.30559 [paper, repository]

Improving quantitative BOLD-based measures of oxygen extraction fraction using hyperoxia BOLD-derived measures of blood volume.

Journal: Magnetic resonance in medicine

Authors' code: Zenodo 15089305 (MIT), Zenodo 14814607 (CC-BY-4.0), fmriphysiology/hyperoxia-constrained_qbold (no license), fmriphysiology/hyperoxia-qbold_sim (MIT)

Status: code verified, 68 files readable, 12 matches

[17012] doi:10.1002/mrm.30584 [paper, repository]

Using PINS pulses to saturate inflow effects on fMRI data at 3 and 7 T.

Journal: Magnetic resonance in medicine

Authors' code: s-hodono/PINSpulse_sim (no license)

Status: code verified, 5 files readable, 1 match

[17013] doi:10.1016/j.isci.2025.112707 [paper, repository]

Spatiotemporal properties of cortical excitatory and inhibitory neuron activation by sustained and bursting electrical microstimulation.

Journal: iScience

Authors' code: BIONIC-Lab/EI_iScience (no license)

Status: code verified, 26 files readable, 12 matches

[17014] doi:10.1038/s41467-025-59654-w [paper, repository]

An integrative systems-biology approach defines mechanisms of Alzheimer's disease neurodegeneration.

Journal: Nature communications

Authors' code: fraenkel-lab/neurodegeneration-network (no license), Zenodo 14796065 (CC-BY-4.0)

Status: code verified, 50 files readable, 33 matches

[17015] doi:10.1038/s41467-025-59682-6 [paper, repository]

Chromogranin A deficiency attenuates tauopathy by altering epinephrine-alpha-adrenergic receptor signaling in PS19 mice.

Journal: Nature communications

Authors' code: codeocean:7273160 (no license)

Status: code found, still to be checked

[17016] doi:10.1038/s41467-025-60039-2 [paper, repository]

DNA nanoflower Oligo-PROTAC for targeted degradation of FUS to treat neurodegenerative diseases.

Journal: Nature communications

Authors' code: proteomecentral.proteomexchange.org/cgi/getdataset (no license)

Status: code verified

[17017] doi:10.1038/s41597-025-05042-4 [paper, data]

An EEG-EMG dataset from a standardized reaching task for biomarker research in upper limb assessment.

Journal: Scientific data

Status: data only, 2 datasets cited

[17018] doi:10.1038/s41597-025-05158-7 [paper, repository]

Le Petit Prince (LPP) multi-talker: Naturalistic 7 T fMRI and EEG dataset.

Journal: Scientific data

Authors' code: compneurolinglab/lpp_multi-talker (no license)

Status: code verified, 8 files readable, 3 matches

[17019] doi:10.1038/s41597-025-05173-8 [paper, repository]

Circadian rhythmicity and reinforcement processing: a dataset of MRI, fMRI, and behavioral measurements.

Journal: Scientific data

Authors' code: PatrycjaScislewska/Circadian_MRI_dataset (no license)

Status: code verified, 9 files readable, 5 matches

[17020] doi:10.1038/s41598-025-01070-7 [paper, data]

Brain structural differences between fibromyalgia patients and healthy control subjects: a source-based morphometric study.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17021] doi:10.1038/s41598-025-94032-y [paper, repository]

Intelligent health model for medical imaging to guide laymen using neural cellular automata.

Journal: Scientific reports

Authors' code: drskscs/Healthcare-Model (no license)

Status: code verified, 1 file readable

[17022] doi:10.1038/s42003-025-08209-2 [paper, repository]

Automated inference of disease mechanisms in patient-hiPSC-derived neuronal networks.

Journal: Communications biology

Authors' code: gitlab.utwente.nl/m7706783/sbi_mea_model (Apache-2.0)

Status: code verified, 9 files readable, 8 matches

[17023] doi:10.1073/pnas.2422752122 [paper, data]

Inflammatory cytokine upd3 induces axon length-dependent synapse removal by glia.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[17024] doi:10.1073/pnas.2502294122 [paper, data]

Stathmin-2 enhances motor axon regeneration after injury independent of its binding to tubulin.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

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