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Accurate estimation of intravoxel incoherent motion parameters based on implicit neural representation.

Code ↔ Paper

4 matches between paragraphs of the paper and lines of its authors' code, computed by the harvester (lexical-v1). Click a colored paragraph or line to see its counterpart.

The 4 matches
  1. [1] § METHODS › Overview of the two‐stage IVIM‐INR framework ↔ train.py, lines 56–95 · score 0.76 · Xavier uniform initialization, hidden layers, ReLU, MLP, Weights, linear
  2. [2] § METHODS › Implementation details ↔ train.py, lines 450–490 · score 0.67 · cosine annealing learning, rate scheduling, Adam, GPU, Training, optimizer
  3. [3] § METHODS › Overview of the two‐stage IVIM‐INR framework ↔ train.py, lines 1–35 · score 0.60 · implicit neural representation, ReLU, IVIM INR, S2, global, S1
  4. [4] § METHODS › Overview of the two‐stage IVIM‐INR framework ↔ train.py, lines 56–95 · score 0.59 · layer MLP, hidden layers, ReLU, IVIM INR, SIREN, denoised

Paper

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The authors' code

Python · 1,690 lines · 71 KB · no license · 4 matches

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It can be read at the source: train.py.

Overview

Authors: Yunxiang Li1, Yen‐Peng Liao1, Yan Dai1, Jie Deng1, You Zhang1
  1. Department of Radiation Oncology, UT Southwestern Medical Center, Dallas, Texas, USA
Journal: Medical physics, volume 53, issue 8, article e70599
Dates: received 4 December 2025; accepted 1 July 2026; published online 28 July 2026; in print August 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1002/mp.70599 · PMID 42519880 · PMCID PMC13411821 · OpenAlex W7171561471
Open access: hybrid, a free copy (OpenAlex)
Status: code verified
Categories: structural MRI / diffusion (modality), human (organism), other condition (population), systems (subfield)
Methods: Statistics, Preprocessing, Connectivity, Machine learning
Keywords: diffusion‐weighted imaging, implicit neural representation, intravoxel incoherent motion
MeSH: Diffusion Magnetic Resonance Imaging*, Image Processing, Computer-Assisted*, Brain, Humans, Imaging, Three-Dimensional, Motion, Movement, Phantoms, Imaging, Signal-To-Noise Ratio (* major topic)
Topic: MRI in cancer diagnosis (Radiology, Nuclear Medicine and Imaging, Medicine), according to OpenAlex
Funding: NCI NIH HHS (R01 CA258987, R01 CA240808, R01 CA280135); NIBIB NIH HHS (R01 EB034691); NIH HHS (R01 CA240808, R01 CA258987, R01 CA280135, R01 EB034691); National Institutes of Health (R01 CA240808, R01 CA280135, R01 EB034691, R01 CA258987)
Citations: not cited yet (Europe PMC); 52 references in the paper

Abstract

Background: Intravoxel incoherent motion (IVIM) diffusion‐weighted imaging has important value in treatment response monitoring. However, traditional voxel‐wise independent fitting methods are highly sensitive to noise and do not utilize spatial correlation, resulting in unstable parameter estimation. Although existing deep learning methods have shown improvements, they are still limited by local receptive fields.

Purpose: To address this, we propose a two‐stage IVIM parameter estimation framework based on Implicit Neural Representation (IVIM‐INR).

Methods: Our IVIM‐INR method achieves global spatial perception through coordinate encoding and enhances spatial context modeling by leveraging local 3D patch information from multi‐b‐value images. The first stage INR performs signal denoising, and the second stage INR accurately fits IVIM parameters.

Results: Evaluation on brain digital phantoms, AAPM breast IVIM‐dMRI Challenge data, and clinical Glioblastoma (GBM) patient data demonstrates significant advantages of the proposed method over existing techniques. In brain simulation data, when SNR = 50, the normalized mean absolute errors (NMAEs) in tumor regions were 0.16±0.10 for Dp, 0.02±0.01 for Dt, and 0.07±0.05 for Fp, all lower than comparison methods. In the tumor tissues of the 100 cases from the AAPM breast IVIM‐dMRI challenge dataset, Fp error was reduced by 58% compared to ConvNet. Intraclass correlation coefficient (ICC) analysis of real clinical data indicates that our method achieves the best performance with an ICC of Dt in normal tissues reaching 0.629.

Conclusions: By combining INR's continuous function modeling capability with spatial‐aware feature design, IVIM‐INR overcomes the inherent limitations of traditional methods under noisy conditions, providing a more reliable tool for clinical IVIM quantitative analysis.

Reproduced under the paper's license (CC BY), from the paper cited above.

Repository

Its files are read in the Code ↔ Paper reader above, with 4 matches between paragraphs and lines of code.

Kent0n-Li/IVIM-INR

License: none: the authors keep all their rights
State: the link answers, verified on 26 September 2026
Evidence: files inventoried
Commit: 9a92905c473df52d259d29f19aeec5e9f589e56d, 22 April 2026
Languages: Python (1)
Size: 2 files, 1 script
Software Heritage: not archived
Found in: the text, “Implementation details”
Holds: README
Not found: license file, CITATION.cff, environment file, tests, continuous integration, documentation
Tools: NiBabel (1 file), NumPy (1 file), pydicom (1 file), PyTorch (1 file), SciPy (1 file)
Availability: 1 check, the latest on 26 September 2026: the link answers
  • 26 September 2026: the link answers
2 files, not copied: shown from their source

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  • train.py — Python, 1,690 lines, 4 matches, shown from its source
  • README.md — Text, 1 line, shown from its source

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 1 script, each with its path and the digest of its content;
  • 4 matches between paragraphs of the paper and lines of the code (method lexical-v1);
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

No dataset and no data link were found in the paper.

Versions

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Version 3, 28 September 2026

  • Publisher: — → Wiley

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 5 authors, 3 keywords, 9 MeSH terms, 4 funders, 45 references.

Cite

This paper

Li, Y., Liao, Y., Dai, Y., Deng, J., & Zhang, Y. (2026). Accurate estimation of intravoxel incoherent motion parameters based on implicit neural representation. Medical physics, 53(8), e70599. https://doi.org/10.1002/mp.70599

BibTeX

@article{li2026accurate,
author = {Li, Yunxiang and Liao, Yen‐Peng and Dai, Yan and Deng, Jie and Zhang, You},
title = {{Accurate estimation of intravoxel incoherent motion parameters based on implicit neural representation}},
journal = {Medical physics},
year = {2026},
month = aug,
volume = {53},
number = {8},
pages = {e70599},
publisher = {Wiley},
issn = {0094-2405},
doi = {10.1002/mp.70599},
url = {https://doi.org/10.1002/mp.70599},
pmid = {42519880},
pmcid = {PMC13411821}
}

RIS

TY - JOUR
AU - Li, Yunxiang
AU - Liao, Yen‐Peng
AU - Dai, Yan
AU - Deng, Jie
AU - Zhang, You
TI - Accurate estimation of intravoxel incoherent motion parameters based on implicit neural representation
T2 - Medical physics
J2 - Med Phys
PY - 2026
DA - 2026/08/01
VL - 53
IS - 8
SP - e70599
SN - 0094-2405
PB - Wiley
DO - 10.1002/mp.70599
UR - https://doi.org/10.1002/mp.70599
LA - en
ER -

CSL-JSON

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