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RNA N6-methyladenosine (m6A) regulates cell cycle progression in diffuse midline glioma (DMG) and confers sensitivity to FTO inhibition.

Overview

Authors: Samuel E Ross1, Holly Holliday2,3, Eyden Wang2, Mahdi Zeraati1, Maria Tsoli2,3, David S Ziegler2,3,4, Marcel E Dinger1
  1. School of Life and Environmental Sciences, University of Sydney, Sydney, NSW Australia
  2. Children’s Cancer Institute at Minderoo Children’s Comprehensive Cancer Centre, Sydney, NSW Australia
  3. School of Clinical Medicine, UNSW Sydney, Sydney, NSW Australia
  4. Kid’s Cancer Centre, Sydney Children’s Hospital, Randwick, NSW Australia
Institutions: The University of Sydney (Australia); UNSW Sydney (Australia); Sydney Children's Hospital (Australia)
Journal: Cell death & disease, volume 17, issue 1, article 371
Dates: received 2 January 2025; accepted 11 March 2026; published online 26 March 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1038/s41419-026-08647-8 · PMID 41888518 · PMCID PMC13039948 · OpenAlex W7140373256
Open access: gold, a free copy (OpenAlex)
Categories: genetics / omics (modality), human (organism), other condition (population), cellular / molecular (subfield)
Methods: Spectral & time-frequency, Statistics, Preprocessing
Keywords: Paediatric cancer, RNA modification, Epigenetics, Transcriptomics
MeSH: Adenosine*, Alpha-Ketoglutarate-Dependent Dioxygenase FTO*, Brain Neoplasms*, Cell Cycle*, Glioma*, Cell Line, Tumor, Cell Proliferation, Epitranscriptome, Gene Expression Regulation, Neoplastic, Humans, RNA Methylation (* major topic)
Topic: RNA modifications and cancer (Molecular Biology, Biochemistry, Genetics and Molecular Biology), according to OpenAlex
Funding: Department of Health | National Health and Medical Research Council (NHMRC) (Leadership Grant #APP2017898, Synergy Grant #2019056); Cancer Institute NSW (Cancer Institute New South Wales) (Program Grant #TPG2037, 2025/ECF2608, 2022/ECF1421, 2022/ECF1425)
Citations: cited by 1 paper (Europe PMC); 78 references in the paper

Abstract

Diffuse midline gliomas (DMG) are deadly pediatric brain cancers with limited treatment options. These tumors likely arise from oligodendrocyte precursor cells (OPC) that acquire a driver histone mutation, leading to an aberrant epigenome. RNA N6-methyladenosine (m6A) is a vital epi-transcriptomic modification that regulates RNA processes and plays a significant role in OPC development through its regulation of transcripts involved in histone modification processes. Despite this pivotal role in OPC biology, the epi-transcriptome has not yet been investigated in DMG, and its interrogation may uncover new therapeutic options and understanding of this disease. Therefore, for the first time, we generated base-resolution m6A landscapes for patient-derived DMG cultures and found that DMG exhibits elevated m6A levels compared to non-neoplastic patient cells, with particularly strong enrichment on transcripts involved in cell motility and migration. In contrast, the minority of transcripts that have lower levels of m6A in DMG were associated with cell cycle regulation, especially components of chromosome segregation machinery. We also demonstrate that DMG is sensitive to inhibition of the m6A demethylase FTO, with FB23-2 treatment resulting in decreased proliferation, reduced survival, and pronounced S-phase arrest/stress, accompanied by robust induction of CDKN1A, GADD45B, and TFRC. Furthermore, FTO inhibition led to significant downregulation of key cell cycle regulators at both the transcriptomic and proteomic levels. Collectively, these findings highlight RNA methylation as a critical regulator of DMG tumorigenicity and identify FTO as a promising therapeutic target for this currently incurable disease.

Reproduced under the paper's license (CC BY), from the paper cited above.

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Data

Datasets cited

Data availability

Data generated in this study have been deposited to European Nucleotide Archive (ENA) under the accession PRJEB80588 and processed data at the Gene Expression Omnibus (GEO) under accession GSE279022 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE279022). Proteomic dada has been deposited to Proteomics Identification Database (PRIDE) under accession PXD058793.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 30 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 7 authors, 4 keywords, 11 MeSH terms, 2 funders, 77 references.

Cite

This paper

Ross, S. E., Holliday, H., Wang, E., Zeraati, M., Tsoli, M., Ziegler, D. S., & Dinger, M. E. (2026). RNA N6-methyladenosine (m6A) regulates cell cycle progression in diffuse midline glioma (DMG) and confers sensitivity to FTO inhibition. Cell death & disease, 17(1), 371. https://doi.org/10.1038/s41419-026-08647-8

BibTeX

@article{ross2026rna,
author = {Ross, Samuel E and Holliday, Holly and Wang, Eyden and Zeraati, Mahdi and Tsoli, Maria and Ziegler, David S and Dinger, Marcel E},
title = {{RNA N6-methyladenosine (m6A) regulates cell cycle progression in diffuse midline glioma (DMG) and confers sensitivity to FTO inhibition}},
journal = {Cell death \& disease},
year = {2026},
month = mar,
volume = {17},
number = {1},
pages = {371},
publisher = {Nature Publishing Group},
issn = {2041-4889},
doi = {10.1038/s41419-026-08647-8},
url = {https://doi.org/10.1038/s41419-026-08647-8},
pmid = {41888518},
pmcid = {PMC13039948}
}

RIS

TY - JOUR
AU - Ross, Samuel E
AU - Holliday, Holly
AU - Wang, Eyden
AU - Zeraati, Mahdi
AU - Tsoli, Maria
AU - Ziegler, David S
AU - Dinger, Marcel E
TI - RNA N6-methyladenosine (m6A) regulates cell cycle progression in diffuse midline glioma (DMG) and confers sensitivity to FTO inhibition
T2 - Cell death & disease
J2 - Cell Death Dis
PY - 2026
DA - 2026/03/26
VL - 17
IS - 1
SP - 371
SN - 2041-4889
PB - Nature Publishing Group
DO - 10.1038/s41419-026-08647-8
UR - https://doi.org/10.1038/s41419-026-08647-8
LA - en
ER -

CSL-JSON

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