OSCR

CAHA-Net: A novel MR image classification model based on DenseNet incorporating coordinate attention and hybrid augmentation.

Code ↔ Paper

3 matches between paragraphs of the paper and lines of its authors' code, computed by the harvester (lexical-v1). Click a colored paragraph or line to see its counterpart.

The 3 matches
  1. [1] § Model architecture › Algorithm design ↔ neurotumornet_classifier.py, lines 25–92 · score 0.55 · BatchNorm, max pooling, dense, modules, classification, tumor
  2. [2] § Experimental results › Experimental environment and parameter settings ↔ train_swin_tiny.py, lines 336–394 · score 0.50 · weight decay, Focal Loss, Swin, Adam, brain tumor, optimization
  3. [3] § Experimental results › Experimental environment and parameter settings ↔ train_swin_tiny_partial_ft.py, lines 147–200 · score 0.50 · weight decay, Focal Loss, Swin, Adam, brain tumor, optimization

Paper

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The authors' code

Python · 470 lines · 16 KB · GPL-3.0 · 1 match

  1. """
  2. NeuroTumorNet - Brain Tumor Classification using Deep Convolutional Neural Networks
  3. ===================================================================================
  4. 基于 https://github.com/h9zdev/NeuroTumorNet 的 PyTorch 实现
  5. 原始论文方法:
  6. 1. Baseline CNN: 3层卷积块 + BatchNorm + L2正则化 + Dropout
  7. 2. VGG16 Transfer Learning: 预训练VGG16 + 自定义分类头
  8. 3. 带正则化的增强CNN: BatchNorm + Dropout + L2正则化
  9. 本模块用 PyTorch 复现原始仓库的核心架构,保留其设计理念:
  10. - 简单的3层CNN作为基线
  11. - BatchNormalization稳定训练
  12. - Dropout防止过拟合
  13. - L2正则化 (通过weight_decay实现)
  14. 作者: 基于 h9zdev/NeuroTumorNet (CC BY-NC 4.0)
  15. """
  16. import torch
  17. import torch.nn as nn
  18. import torch.nn.functional as F
  19. # ============================================================================
  20. # 1. NeuroTumorNet Baseline CNN
  21. # ============================================================================
  22. class NeuroTumorNetBaseline(nn.Module):
  23. """
  24. NeuroTumorNet Baseline CNN - 原始论文的基线模型
  25. 架构:
  26. - 3个卷积块: Conv2D -> BatchNorm -> ReLU -> MaxPool
  27. - 通道数: 32 -> 64 -> 128
  28. - 全连接层: Flatten -> Dense(128) -> Dropout -> Output
  29. 基于论文 Section 3.3: Model Architecture
  30. """
  31. def __init__(self, num_classes=4, dropout_rate=0.5):
  32. super(NeuroTumorNetBaseline, self).__init__()
  33. # 卷积块 1: 32 filters
  34. self.conv1 = nn.Conv2d(3, 32, kernel_size=3, padding=1)
  35. self.bn1 = nn.BatchNorm2d(32)
  36. self.pool1 = nn.MaxPool2d(2, 2)
  37. # 卷积块 2: 64 filters
  38. self.conv2 = nn.Conv2d(32, 64, kernel_size=3, padding=1)
  39. self.bn2 = nn.BatchNorm2d(64)
  40. self.pool2 = nn.MaxPool2d(2, 2)
  41. # 卷积块 3: 128 filters
  42. self.conv3 = nn.Conv2d(64, 128, kernel_size=3, padding=1)
  43. self.bn3 = nn.BatchNorm2d(128)
  44. self.pool3 = nn.MaxPool2d(2, 2)
  45. # 分类头
  46. # 输入 224x224 -> 经过3次pool后 -> 28x28x128
  47. self.flatten = nn.Flatten()
  48. self.fc1 = nn.Linear(128 * 28 * 28, 128)
  49. self.dropout = nn.Dropout(dropout_rate)
  50. self.fc2 = nn.Linear(128, num_classes)
  51. self._initialize_weights()
  52. def _initialize_weights(self):
  53. for m in self.modules():
  54. if isinstance(m, nn.Conv2d):
  55. nn.init.kaiming_normal_(m.weight, mode='fan_out', nonlinearity='relu')
  56. if m.bias is not None:
  57. nn.init.constant_(m.bias, 0)
  58. elif isinstance(m, nn.BatchNorm2d):
  59. nn.init.constant_(m.weight, 1)
  60. nn.init.constant_(m.bias, 0)
  61. elif isinstance(m, nn.Linear):
  62. nn.init.normal_(m.weight, 0, 0.01)
  63. nn.init.constant_(m.bias, 0)
  64. def forward(self, x):
  65. # 卷积块 1
  66. x = self.pool1(F.relu(self.bn1(self.conv1(x))))
  67. # 卷积块 2
  68. x = self.pool2(F.relu(self.bn2(self.conv2(x))))
  69. # 卷积块 3
  70. x = self.pool3(F.relu(self.bn3(self.conv3(x))))
  71. # 分类
  72. x = self.flatten(x)
  73. x = F.relu(self.fc1(x))
  74. x = self.dropout(x)
  75. x = self.fc2(x)
  76. return x
  77. # ============================================================================
  78. # 2. NeuroTumorNet Enhanced CNN (with Regularization)
  79. # ============================================================================
  80. class NeuroTumorNetEnhanced(nn.Module):
  81. """
  82. NeuroTumorNet Enhanced CNN - 带增强正则化的模型
  83. 基于论文 Section 3.6: Addressing Overfitting
  84. - 每个卷积层后添加BatchNorm
  85. - 更高的Dropout率 (可配置0.3-0.7)
  86. - L2正则化通过optimizer的weight_decay实现
  87. 架构增强:
  88. - 更深的全连接层
  89. - 多级Dropout
  90. """
  91. def __init__(self, num_classes=4, dropout_rate1=0.5, dropout_rate2=0.3):
  92. super(NeuroTumorNetEnhanced, self).__init__()
  93. # 卷积块 1
  94. self.conv1 = nn.Conv2d(3, 32, kernel_size=3, padding=1)
  95. self.bn1 = nn.BatchNorm2d(32)
  96. self.pool1 = nn.MaxPool2d(2, 2)
  97. # 卷积块 2
  98. self.conv2 = nn.Conv2d(32, 64, kernel_size=3, padding=1)
  99. self.bn2 = nn.BatchNorm2d(64)
  100. self.pool2 = nn.MaxPool2d(2, 2)
  101. # 卷积块 3
  102. self.conv3 = nn.Conv2d(64, 128, kernel_size=3, padding=1)
  103. self.bn3 = nn.BatchNorm2d(128)
  104. self.pool3 = nn.MaxPool2d(2, 2)
  105. # 增强的分类头
  106. self.flatten = nn.Flatten()
  107. self.fc1 = nn.Linear(128 * 28 * 28, 256)
  108. self.bn_fc1 = nn.BatchNorm1d(256)
  109. self.dropout1 = nn.Dropout(dropout_rate1)
  110. self.fc2 = nn.Linear(256, 128)
  111. self.dropout2 = nn.Dropout(dropout_rate2)
  112. self.fc3 = nn.Linear(128, num_classes)
  113. self._initialize_weights()
  114. def _initialize_weights(self):
  115. for m in self.modules():
  116. if isinstance(m, nn.Conv2d):
  117. nn.init.kaiming_normal_(m.weight, mode='fan_out', nonlinearity='relu')
  118. elif isinstance(m, (nn.BatchNorm2d, nn.BatchNorm1d)):
  119. nn.init.constant_(m.weight, 1)
  120. nn.init.constant_(m.bias, 0)
  121. elif isinstance(m, nn.Linear):
  122. nn.init.normal_(m.weight, 0, 0.01)
  123. nn.init.constant_(m.bias, 0)
  124. def forward(self, x):
  125. # 卷积块
  126. x = self.pool1(F.relu(self.bn1(self.conv1(x))))
  127. x = self.pool2(F.relu(self.bn2(self.conv2(x))))
  128. x = self.pool3(F.relu(self.bn3(self.conv3(x))))
  129. # 增强分类头
  130. x = self.flatten(x)
  131. x = F.relu(self.bn_fc1(self.fc1(x)))
  132. x = self.dropout1(x)
  133. x = F.relu(self.fc2(x))
  134. x = self.dropout2(x)
  135. x = self.fc3(x)
  136. return x
  137. # ============================================================================
  138. # 3. NeuroTumorNet Deep (5-layer CNN)
  139. # ============================================================================
  140. class NeuroTumorNetDeep(nn.Module):
  141. """
  142. NeuroTumorNet Deep - 更深的CNN变体
  143. 5个卷积块:
  144. - 通道数: 32 -> 64 -> 128 -> 256 -> 512
  145. - 使用Global Average Pooling代替Flatten减少参数
  146. """
  147. def __init__(self, num_classes=4, dropout_rate=0.5):
  148. super(NeuroTumorNetDeep, self).__init__()
  149. # 卷积块序列
  150. self.features = nn.Sequential(
  151. # Block 1
  152. nn.Conv2d(3, 32, kernel_size=3, padding=1),
  153. nn.BatchNorm2d(32),
  154. nn.ReLU(inplace=True),
  155. nn.MaxPool2d(2, 2),
  156. # Block 2
  157. nn.Conv2d(32, 64, kernel_size=3, padding=1),
  158. nn.BatchNorm2d(64),
  159. nn.ReLU(inplace=True),
  160. nn.MaxPool2d(2, 2),
  161. # Block 3
  162. nn.Conv2d(64, 128, kernel_size=3, padding=1),
  163. nn.BatchNorm2d(128),
  164. nn.ReLU(inplace=True),
  165. nn.MaxPool2d(2, 2),
  166. # Block 4
  167. nn.Conv2d(128, 256, kernel_size=3, padding=1),
  168. nn.BatchNorm2d(256),
  169. nn.ReLU(inplace=True),
  170. nn.MaxPool2d(2, 2),
  171. # Block 5
  172. nn.Conv2d(256, 512, kernel_size=3, padding=1),
  173. nn.BatchNorm2d(512),
  174. nn.ReLU(inplace=True),
  175. nn.MaxPool2d(2, 2),
  176. )
  177. # Global Average Pooling
  178. self.global_pool = nn.AdaptiveAvgPool2d(1)
  179. # 分类头
  180. self.classifier = nn.Sequential(
  181. nn.Flatten(),
  182. nn.Linear(512, 256),
  183. nn.ReLU(inplace=True),
  184. nn.Dropout(dropout_rate),
  185. nn.Linear(256, num_classes)
  186. )
  187. self._initialize_weights()
  188. def _initialize_weights(self):
  189. for m in self.modules():
  190. if isinstance(m, nn.Conv2d):
  191. nn.init.kaiming_normal_(m.weight, mode='fan_out', nonlinearity='relu')
  192. elif isinstance(m, nn.BatchNorm2d):
  193. nn.init.constant_(m.weight, 1)
  194. nn.init.constant_(m.bias, 0)
  195. elif isinstance(m, nn.Linear):
  196. nn.init.normal_(m.weight, 0, 0.01)
  197. nn.init.constant_(m.bias, 0)
  198. def forward(self, x):
  199. x = self.features(x)
  200. x = self.global_pool(x)
  201. x = self.classifier(x)
  202. return x
  203. # ============================================================================
  204. # 4. NeuroTumorNet VGG-style (类似VGG的架构)
  205. # ============================================================================
  206. class NeuroTumorNetVGGStyle(nn.Module):
  207. """
  208. NeuroTumorNet VGG-style - 模仿VGG的双卷积块设计
  209. 参考原始仓库使用VGG16进行迁移学习的思路,
  210. 但这里是从头训练一个VGG风格的小型网络
  211. 每个stage有2个连续的3x3卷积
  212. """
  213. def __init__(self, num_classes=4, dropout_rate=0.5):
  214. super(NeuroTumorNetVGGStyle, self).__init__()
  215. self.features = nn.Sequential(
  216. # Stage 1: 2 x Conv(64)
  217. nn.Conv2d(3, 64, kernel_size=3, padding=1),
  218. nn.BatchNorm2d(64),
  219. nn.ReLU(inplace=True),
  220. nn.Conv2d(64, 64, kernel_size=3, padding=1),
  221. nn.BatchNorm2d(64),
  222. nn.ReLU(inplace=True),
  223. nn.MaxPool2d(2, 2),
  224. # Stage 2: 2 x Conv(128)
  225. nn.Conv2d(64, 128, kernel_size=3, padding=1),
  226. nn.BatchNorm2d(128),
  227. nn.ReLU(inplace=True),
  228. nn.Conv2d(128, 128, kernel_size=3, padding=1),
  229. nn.BatchNorm2d(128),
  230. nn.ReLU(inplace=True),
  231. nn.MaxPool2d(2, 2),
  232. # Stage 3: 3 x Conv(256)
  233. nn.Conv2d(128, 256, kernel_size=3, padding=1),
  234. nn.BatchNorm2d(256),
  235. nn.ReLU(inplace=True),
  236. nn.Conv2d(256, 256, kernel_size=3, padding=1),
  237. nn.BatchNorm2d(256),
  238. nn.ReLU(inplace=True),
  239. nn.Conv2d(256, 256, kernel_size=3, padding=1),
  240. nn.BatchNorm2d(256),
  241. nn.ReLU(inplace=True),
  242. nn.MaxPool2d(2, 2),
  243. # Stage 4: 3 x Conv(512)
  244. nn.Conv2d(256, 512, kernel_size=3, padding=1),
  245. nn.BatchNorm2d(512),
  246. nn.ReLU(inplace=True),
  247. nn.Conv2d(512, 512, kernel_size=3, padding=1),
  248. nn.BatchNorm2d(512),
  249. nn.ReLU(inplace=True),
  250. nn.Conv2d(512, 512, kernel_size=3, padding=1),
  251. nn.BatchNorm2d(512),
  252. nn.ReLU(inplace=True),
  253. nn.MaxPool2d(2, 2),
  254. )
  255. self.avgpool = nn.AdaptiveAvgPool2d((7, 7))
  256. self.classifier = nn.Sequential(
  257. nn.Linear(512 * 7 * 7, 512),
  258. nn.ReLU(inplace=True),
  259. nn.Dropout(dropout_rate),
  260. nn.Linear(512, 256),
  261. nn.ReLU(inplace=True),
  262. nn.Dropout(dropout_rate),
  263. nn.Linear(256, num_classes)
  264. )
  265. self._initialize_weights()
  266. def _initialize_weights(self):
  267. for m in self.modules():
  268. if isinstance(m, nn.Conv2d):
  269. nn.init.kaiming_normal_(m.weight, mode='fan_out', nonlinearity='relu')
  270. elif isinstance(m, nn.BatchNorm2d):
  271. nn.init.constant_(m.weight, 1)
  272. nn.init.constant_(m.bias, 0)
  273. elif isinstance(m, nn.Linear):
  274. nn.init.normal_(m.weight, 0, 0.01)
  275. nn.init.constant_(m.bias, 0)
  276. def forward(self, x):
  277. x = self.features(x)
  278. x = self.avgpool(x)
  279. x = torch.flatten(x, 1)
  280. x = self.classifier(x)
  281. return x
  282. # ============================================================================
  283. # 5. NeuroTumorNet Tiny (轻量级版本)
  284. # ============================================================================
  285. class NeuroTumorNetTiny(nn.Module):
  286. """
  287. NeuroTumorNet Tiny - 轻量级版本用于快速实验
  288. 更少的通道数: 16 -> 32 -> 64
  289. 使用Global Average Pooling大幅减少参数
  290. """
  291. def __init__(self, num_classes=4, dropout_rate=0.3):
  292. super(NeuroTumorNetTiny, self).__init__()
  293. self.features = nn.Sequential(
  294. # Block 1
  295. nn.Conv2d(3, 16, kernel_size=3, padding=1),
  296. nn.BatchNorm2d(16),
  297. nn.ReLU(inplace=True),
  298. nn.MaxPool2d(2, 2),
  299. # Block 2
  300. nn.Conv2d(16, 32, kernel_size=3, padding=1),
  301. nn.BatchNorm2d(32),
  302. nn.ReLU(inplace=True),
  303. nn.MaxPool2d(2, 2),
  304. # Block 3
  305. nn.Conv2d(32, 64, kernel_size=3, padding=1),
  306. nn.BatchNorm2d(64),
  307. nn.ReLU(inplace=True),
  308. nn.MaxPool2d(2, 2),
  309. # Block 4
  310. nn.Conv2d(64, 128, kernel_size=3, padding=1),
  311. nn.BatchNorm2d(128),
  312. nn.ReLU(inplace=True),
  313. nn.AdaptiveAvgPool2d(1),
  314. )
  315. self.classifier = nn.Sequential(
  316. nn.Flatten(),
  317. nn.Linear(128, 64),
  318. nn.ReLU(inplace=True),
  319. nn.Dropout(dropout_rate),
  320. nn.Linear(64, num_classes)
  321. )
  322. self._initialize_weights()
  323. def _initialize_weights(self):
  324. for m in self.modules():
  325. if isinstance(m, nn.Conv2d):
  326. nn.init.kaiming_normal_(m.weight, mode='fan_out', nonlinearity='relu')
  327. elif isinstance(m, nn.BatchNorm2d):
  328. nn.init.constant_(m.weight, 1)
  329. nn.init.constant_(m.bias, 0)
  330. elif isinstance(m, nn.Linear):
  331. nn.init.normal_(m.weight, 0, 0.01)
  332. nn.init.constant_(m.bias, 0)
  333. def forward(self, x):
  334. x = self.features(x)
  335. x = self.classifier(x)
  336. return x
  337. # ============================================================================
  338. # 模型工厂函数
  339. # ============================================================================
  340. def create_neurotumornet(variant='baseline', num_classes=4, **kwargs):
  341. """
  342. 创建 NeuroTumorNet 模型
  343. Args:
  344. variant: 模型变体
  345. - 'baseline': 原始3层CNN
  346. - 'enhanced': 带增强正则化的CNN
  347. - 'deep': 5层深度CNN
  348. - 'vgg_style': VGG风格的CNN
  349. - 'tiny': 轻量级CNN
  350. num_classes: 输出类别数
  351. **kwargs: 额外参数 (如 dropout_rate)
  352. Returns:
  353. PyTorch模型
  354. """
  355. models = {
  356. 'baseline': NeuroTumorNetBaseline,
  357. 'enhanced': NeuroTumorNetEnhanced,
  358. 'deep': NeuroTumorNetDeep,
  359. 'vgg_style': NeuroTumorNetVGGStyle,
  360. 'tiny': NeuroTumorNetTiny,
  361. }
  362. if variant not in models:
  363. raise ValueError(f"Unknown variant: {variant}. Choose from {list(models.keys())}")
  364. return models[variant](num_classes=num_classes, **kwargs)
  365. # ============================================================================
  366. # 测试代码
  367. # ============================================================================
  368. if __name__ == '__main__':
  369. print("=" * 60)
  370. print("测试 NeuroTumorNet Classifier")
  371. print("=" * 60)
  372. device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
  373. dummy_input = torch.randn(2, 3, 224, 224).to(device)
  374. models_to_test = [
  375. ('NeuroTumorNetBaseline', 'baseline'),
  376. ('NeuroTumorNetEnhanced', 'enhanced'),
  377. ('NeuroTumorNetDeep', 'deep'),
  378. ('NeuroTumorNetVGGStyle', 'vgg_style'),
  379. ('NeuroTumorNetTiny', 'tiny'),
  380. ]
  381. for name, variant in models_to_test:
  382. print(f"\n--- {name} ---")
  383. model = create_neurotumornet(variant=variant, num_classes=4).to(device)
  384. output = model(dummy_input)
  385. params = sum(p.numel() for p in model.parameters()) / 1e6
  386. print(f"输入: {dummy_input.shape}")
  387. print(f"输出: {output.shape}")
  388. print(f"参数量: {params:.2f}M", end=" ")
  389. print("✅ 测试通过!")
  390. print("\n" + "=" * 60)
  391. print("所有测试完成!")
  392. print("=" * 60)

neurotumornet_classifier.py at commit acbe901, under GPL-3.0 · at the source

Overview

Authors: Hui Qi1, Ruizhe Guo2,3, Jiajun He2, Xiyi Wang4, Yaling Han2, Xuchu Jiang2, Chibiao Liu1,5,6
  1. School of Information Engineering, Sanming University,Sanming, 365004 China
  2. School of Statistics and Mathematics, Zhongnan University of Economics and Law,Wuhan, 430073 China
  3. Department of Statistics, University of Warwick,Coventry, CV4 7AL UK
  4. School of Mathematics, Sun Yat-sen University,Guangzhou, 510275 China
  5. Fujian Key Lab of Agriculture IOT Application, Sanming University,Sanming, 365004 China
  6. Fujian Provincial Universities Key Laboratory of Industrial Big Data Analysis and Application, Sanming University,Sanming, 365004 China
Journal: Scientific reports, volume 16, issue 1, article 17159
Dates: received 7 January 2026; accepted 22 May 2026; published online 28 May 2026
Type: Research article · Language: English
License: CC BY-NC-ND
Identifiers: DOI 10.1038/s41598-026-55136-1 · PMID 42209768 · PMCID PMC13234125 · OpenAlex W7162650079
Open access: gold, a free copy (OpenAlex)
Status: code verified
Categories: structural MRI / diffusion (modality), human (organism), other condition (population)
Methods: Machine learning, Statistics
Keywords: Brain tumor, Image classification, Data augmentation, Coordinate attention mechanism, DenseNet, Cancer, Computational biology and bioinformatics, Engineering, Mathematics and computing
MeSH: Brain Neoplasms*, Image Interpretation, Computer-Assisted*, Magnetic Resonance Imaging*, Algorithms, Convolutional Neural Networks, Diagnosis, Computer-Assisted, Humans, Image Processing, Computer-Assisted (* major topic)
Topic: Brain Tumor Detection and Classification (Neurology, Neuroscience), according to OpenAlex
Funding: Fujian Provincial Natural Science Foundation of China (2024J01903); Key Project of the Education Department of Fujian Province (JZ230054)
Citations: not cited yet (Europe PMC); 32 references in the paper

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Jiajun-H/CAHA-Net

License: GPL-3.0
State: the link answers, verified on 28 September 2026
Evidence: files inventoried
Commit: acbe9011a2f9b1677492b860d04a4dab7a0d64c0, 1 May 2026
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Size: 13,765 files, 51 scripts
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Holds: README, license file
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Tools: PyTorch (41 files), NumPy (38 files), Pillow (32 files), scikit-learn (31 files), Matplotlib (4 files), OpenCV (2 files), SciPy (2 files), NiBabel (1 file), seaborn (1 file)
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Qi, H., Guo, R., He, J., Wang, X., Han, Y., Jiang, X., & Liu, C. (2026). CAHA-Net: A novel MR image classification model based on DenseNet incorporating coordinate attention and hybrid augmentation. Scientific reports, 16(1), 17159. https://doi.org/10.1038/s41598-026-55136-1

BibTeX

@article{qi2026caha,
author = {Qi, Hui and Guo, Ruizhe and He, Jiajun and Wang, Xiyi and Han, Yaling and Jiang, Xuchu and Liu, Chibiao},
title = {{CAHA-Net: A novel MR image classification model based on DenseNet incorporating coordinate attention and hybrid augmentation}},
journal = {Scientific reports},
year = {2026},
month = may,
volume = {16},
number = {1},
pages = {17159},
publisher = {Nature Publishing Group},
issn = {2045-2322},
doi = {10.1038/s41598-026-55136-1},
url = {https://doi.org/10.1038/s41598-026-55136-1},
pmid = {42209768},
pmcid = {PMC13234125}
}

RIS

TY - JOUR
AU - Qi, Hui
AU - Guo, Ruizhe
AU - He, Jiajun
AU - Wang, Xiyi
AU - Han, Yaling
AU - Jiang, Xuchu
AU - Liu, Chibiao
TI - CAHA-Net: A novel MR image classification model based on DenseNet incorporating coordinate attention and hybrid augmentation
T2 - Scientific reports
J2 - Sci Rep
PY - 2026
DA - 2026/05/28
VL - 16
IS - 1
SP - 17159
SN - 2045-2322
PB - Nature Publishing Group
DO - 10.1038/s41598-026-55136-1
UR - https://doi.org/10.1038/s41598-026-55136-1
LA - en
ER -

CSL-JSON

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