OSCR

Multimodal multicentre investigation of diagnostic and prognostic markers in disorders of consciousness.

Code ↔ Paper

4 matches between paragraphs of the paper and lines of its authors' code, computed by the harvester (lexical-v1). Click a colored paragraph or line to see its counterpart.

The 4 matches
  1. [1] § Results › Feature importance differs in diagnostic and prognostic models ↔ modeling/01_efm_model-results.py, lines 108–165 · score 0.82 · symbolic mutual information, permutation entropy, Kolmogorov complexity, half brain, EEG RS, beta
  2. [2] § Results › Feature importance differs in diagnostic and prognostic models ↔ modeling/07_auc_ci_per_feature.py, lines 209–245 · score 0.77 · symbolic mutual information, permutation entropy, Kolmogorov complexity, EEG RS, beta, evoked
  3. [3] § Results › Feature importance differs in diagnostic and prognostic models ↔ fmri_markers/fmri_functions.py, lines 217–324 · score 0.64 · connectivity features, subcortical areas, subcortical regions, limbic, volume, network
  4. [4] § Results › Multimodal integration improves predictive accuracy ↔ modeling/06_efm_model_outputs_and_surrogates_plots_generalization.py, lines 60–113 · score 0.53 · Mann Whitney, Bonferroni corrected, Balanced accuracy, model, modalities

Paper

Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC

The paper is loaded when this pane is shown.

The authors' code

Python · 1,276 lines · 58 KB · no license · 1 match

The registry keeps no copy of this file: its repository has no license, so its authors keep all their rights to it. Your browser shows it from its source, with JavaScript.

It can be read at the source: modeling/01_efm_model-results.py.

Overview

Authors: Dragana Manasova1,2, Laouen Mayal Louan Belloli1,3,4, Martin Justinus Rosenfelder5,6,7, Lina Willacker5, Emilia Fló Rama1, Chiara Valota8,9, Bertrand Hermann10,11, Brigitte Charlotte Kaufmann1, Alice Pirastru9, Chiara Camilla Derchi9, Theresa Raiser5, Melanie Valente1, Aude Sangare1, Başak Türker1, Nadya Pyatigorskaya1, Benoît Béranger1, Michele Colombo8, Esteban Munoz-Musat1,12, Anira Escrichs13, Tiziana Atzori9
and 17 other authorsFrancesca Baglio9, Constantin Lapa14, Ansgar Berlis15, Kristina Krüger15, Tina Luther5,6, Vincent Perlbarg16, Gustavo Deco13,17, Yonathan Sanz-Perl1,17, Enzo Tagliazucchi4,18, Louis Puybasset16,19, Benjamin Rohaut1,20, Lionel Naccache1,21, Angela Comanducci9, Anat Arzi1,22,23, Mario Rosanova8, Andreas Bender5,6,24, Jacobo Diego Sitt1
24 affiliations
  1. Institut du Cerveau - Paris Brain Institute - ICM, Inserm, CNRS, Sorbonne Université, Paris 75013, France
  2. Université Paris Cité, Paris 75006, France
  3. Laboratorio de Inteligencia Artificial Aplicada, Instituto de Ciencias de la Computación, Universidad de Buenos Aires, Buenos Aires C1053, Argentina
  4. Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ministry of Science, Technology and Innovation, Buenos Aires C1053, Argentina
  5. Department of Neurology, University Hospital of the Ludwig-Maximilians-Universität München, Munich 82152, Germany
  6. Therapiezentrum Burgau, Hospital for Neurological Rehabilitation, Burgau 89331, Germany
  7. Clinical and Biological Psychology, Institute of Psychology and Education, Ulm University, Ulm 89081, Germany
  8. Department of Biomedical and Clinical Sciences, University of Milano, Milan 20157, Italy
  9. IRCCS Fondazione Don Carlo Gnocchi ONLUS, Milan 20148, Italy
  10. Inserm 1266, Institute of Psychiatry and Neurosciences of Paris, Université Paris Cité, Paris F-75014, France
  11. Medical Intensive Care Unit, HEGP Hôpital, Assistance Publique - Hôpitaux de Paris-Centre (APHP-Centre), Paris 75014, France
  12. Centre Mémoire de Ressources et de Recherche, Paris Nord/Université Paris-Cité, Paris 75006, France
  13. Center for Brain and Cognition, Computational Neuroscience Group, Universitat Pompeu Fabra, Barcelona 08005, Spain
  14. Nuclear Medicine, Faculty of Medicine, University of Augsburg, Augsburg 86156, Germany
  15. Diagnostic and Interventional Neuroradiology, Faculty of Medicine, University of Augsburg, Augsburg 86156, Germany
  16. BRAINTALE SAS, Paris 75013, France
  17. Institució Catalana de la Recerca I Estudis Avançats (ICREA), Barcelona 08010, Spain
  18. Latin American Brain Health Institute (BrainLat), Universidad Adolfo Ibáñez, Santiago 7941169, Chile
  19. GRC 29, AP-HP, DMU DREAM, Department of Anaesthesiology and Critical Care Medicine, Pitié-Salpêtrière Hospital, Sorbonne University, Paris 75013, France
  20. AP-HP, Hôpital de la Pitié Salpêtrière, Neuro ICU, DMU Neurosciences, Paris 75013, France
  21. AP-HP, Hôpital Pitié - Salpêtrière, Service de Neurophysiologie Clinique, Paris 75013, France
  22. Department of Medical Neurobiology, Institute for Medical Research Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 9112102, Israel
  23. Department of Cognitive and Brain Sciences, The Hebrew University of Jerusalem, Jerusalem 9112102, Israel
  24. Department of Neurorehabilitation, Medical Faculty, University of Augsburg, Augsburg 86156, Germany
Journal: Brain : a journal of neurology, volume 149, issue 4, pages 1381-1395
Dates: received 21 November 2024; accepted 3 September 2025; published online 7 January 2026; in print April 2026
Type: Research article · Language: English
License: CC BY-NC
Identifiers: DOI 10.1093/brain/awaf412 · PMID 41499248 · PMCID PMC13058464 · OpenAlex W7119468174
Open access: hybrid, a free copy (OpenAlex)
Status: code verified
Categories: structural MRI / diffusion (modality), EEG (modality), PET / SPECT (modality), human (organism), other condition (population)
Methods: Machine learning, fMRI & imaging, Preprocessing
Keywords: disorders of consciousness, electrophysiology, neuroimaging, multimodal, machine learning
MeSH: Brain*, Consciousness Disorders*, Multimodal Imaging*, Neuroimaging*, Adult, Electroencephalography, Female, Humans, Machine Learning, Magnetic Resonance Imaging, Male, Middle Aged, Positron-Emission Tomography, Prognosis (* major topic)
Topic: Traumatic Brain Injury Research (Epidemiology, Medicine), according to OpenAlex
Funding: Agence Nationale de la Recherche (ANR-19-PERM-0002); Fondazione Regionale per la Ricerca Biomedica (GA 77982); MODELDxConsciousness Consortium (JTC 2023); Paris Brain Institute; Ecole Doctorale Frontières de l'Innovation en Recherche et Education-Programme Bettencourt; Federal Ministry of Education and Research (01KU2003); Italian Ministry of Health; European Research Council (101071900)
Citations: cited by 7 papers (Europe PMC); 77 references in the paper

Abstract

Severely brain-injured patients may enter a spectrum of conditions collectively known as disorders of consciousness. This spectrum includes clinical conditions such as unresponsive wakefulness syndrome or minimally conscious state, where the behavioural assessment of consciousness can often be deceptive.

To bridge this dissociation, neuroimaging techniques are employed to identify the residual brain functions. Each neuroimaging modality imperfectly captures distinct aspects of brain preservation—functional, anatomical, or both. In this study, we adopt a comprehensive approach by integrating the neurophysiology and neuroimaging modalities available from the standard and advanced clinical assessments through interpretable machine learning. The electrophysiological modalities included high-density EEG (resting state and task), whereas neuroimaging modalities included anatomical and resting-state functional MRI, diffusion MRI and 18F-fluorodeoxyglucose PET.

Our investigation reveals that specific modalities, such as functional assessments, provide comprehensive insights into the currently evaluated state of consciousness, the diagnosis of the patients. Conversely, structural modalities offer valuable information about the patient's evolution within the consciousness spectrum. We validate the proposed analysis with data coming from other centres with different acquisition parameters. Importantly, we demonstrate that model performance improves with an increase in the number of modalities. We observe a higher inter-modality disagreement for minimally conscious state patients and those patients who improve. Lastly, we observe a difference in feature importances between diagnosis and prognosis, with an interaction between modality and anatomical structures: some subcortical markers tend to contribute more to prognosis, while other cortical markers are more informative for diagnosis.

This integrative multimodal and machine learning methodology presents a promising avenue for a more nuanced understanding of disorders of consciousness, contributing to enhanced diagnostic precision, prognostic capabilities and the personalization of rehabilitative strategies in clinical practice.

Reproduced under the paper's license (CC BY-NC), from the paper cited above.

Repository

Its files are read in the Code ↔ Paper reader above, with 4 matches between paragraphs and lines of code.

DraganaMana/multimod_doc

License: none: the authors keep all their rights
State: the link answers, verified on 28 September 2026
Evidence: files inventoried
Commit: 476e8bf792c6258056bba25d82d73535edfc5379, 7 January 2026
Languages: Python (27), Shell (10)
Size: 41 files, 37 scripts
Software Heritage: not archived
Found in: “Data availability”
Holds: README
Not found: license file, CITATION.cff, environment file, tests, continuous integration, documentation
Tools: pandas (24 files), NumPy (19 files), Matplotlib (17 files), Nilearn (9 files), seaborn (9 files), scikit-learn (8 files), PyBIDS (7 files), FreeSurfer (6 files), NiBabel (4 files), SciPy (4 files), fMRIPrep (1 file), MNE-Python (1 file), neuromaps (1 file), specparam (formerly FOOOF) (1 file), statannotations (1 file), XGBoost (1 file)
Availability: 1 check, the latest on 28 September 2026: the link answers
  • 28 September 2026: the link answers
38 files, not copied: shown from their source

OSCR keeps no copy of these files: this repository has no license that allows it. The reader above shows each one from its source, fetched by your browser at commit 476e8bf, when its fingerprint is the one OSCR verified. How this works.

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 37 scripts, each with its path and the digest of its content;
  • 4 matches between paragraphs of the paper and lines of the code (method lexical-v1);
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

No dataset and no data link were found in the paper.

Data availability

The data are not publicly available. Codes used in the analyses will be made publicly available upon publication at https://github.com/DraganaMana/multimod_doc.

Reproduced under the paper's license (CC BY-NC), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 28 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 37 authors, 5 keywords, 14 MeSH terms, 8 funders, 73 references.

Cite

This paper

Manasova, D., Belloli, L. M. L., Rosenfelder, M. J., Willacker, L., Fló Rama, E., Valota, C., Hermann, B., Kaufmann, B. C., Pirastru, A., Derchi, C. C., Raiser, T., Valente, M., Sangare, A., Türker, B., Pyatigorskaya, N., Béranger, B., Colombo, M., Munoz-Musat, E., Escrichs, A., . . . Sitt, J. D. (2026). Multimodal multicentre investigation of diagnostic and prognostic markers in disorders of consciousness. Brain : a journal of neurology, 149(4), 1381-1395. https://doi.org/10.1093/brain/awaf412

BibTeX

@article{manasova2026multimodal,
author = {Manasova, Dragana and Belloli, Laouen Mayal Louan and Rosenfelder, Martin Justinus and Willacker, Lina and Fló Rama, Emilia and Valota, Chiara and Hermann, Bertrand and Kaufmann, Brigitte Charlotte and Pirastru, Alice and Derchi, Chiara Camilla and Raiser, Theresa and Valente, Melanie and Sangare, Aude and Türker, Başak and Pyatigorskaya, Nadya and Béranger, Benoît and Colombo, Michele and Munoz-Musat, Esteban and Escrichs, Anira and Atzori, Tiziana and Baglio, Francesca and Lapa, Constantin and Berlis, Ansgar and Krüger, Kristina and Luther, Tina and Perlbarg, Vincent and Deco, Gustavo and Sanz-Perl, Yonathan and Tagliazucchi, Enzo and Puybasset, Louis and Rohaut, Benjamin and Naccache, Lionel and Comanducci, Angela and Arzi, Anat and Rosanova, Mario and Bender, Andreas and Sitt, Jacobo Diego},
title = {{Multimodal multicentre investigation of diagnostic and prognostic markers in disorders of consciousness}},
journal = {Brain : a journal of neurology},
year = {2026},
month = apr,
volume = {149},
number = {4},
pages = {1381--1395},
publisher = {Oxford University Press},
issn = {0006-8950},
doi = {10.1093/brain/awaf412},
url = {https://doi.org/10.1093/brain/awaf412},
pmid = {41499248},
pmcid = {PMC13058464}
}

RIS

TY - JOUR
AU - Manasova, Dragana
AU - Belloli, Laouen Mayal Louan
AU - Rosenfelder, Martin Justinus
AU - Willacker, Lina
AU - Fló Rama, Emilia
AU - Valota, Chiara
AU - Hermann, Bertrand
AU - Kaufmann, Brigitte Charlotte
AU - Pirastru, Alice
AU - Derchi, Chiara Camilla
AU - Raiser, Theresa
AU - Valente, Melanie
AU - Sangare, Aude
AU - Türker, Başak
AU - Pyatigorskaya, Nadya
AU - Béranger, Benoît
AU - Colombo, Michele
AU - Munoz-Musat, Esteban
AU - Escrichs, Anira
AU - Atzori, Tiziana
AU - Baglio, Francesca
AU - Lapa, Constantin
AU - Berlis, Ansgar
AU - Krüger, Kristina
AU - Luther, Tina
AU - Perlbarg, Vincent
AU - Deco, Gustavo
AU - Sanz-Perl, Yonathan
AU - Tagliazucchi, Enzo
AU - Puybasset, Louis
AU - Rohaut, Benjamin
AU - Naccache, Lionel
AU - Comanducci, Angela
AU - Arzi, Anat
AU - Rosanova, Mario
AU - Bender, Andreas
AU - Sitt, Jacobo Diego
TI - Multimodal multicentre investigation of diagnostic and prognostic markers in disorders of consciousness
T2 - Brain : a journal of neurology
J2 - Brain
PY - 2026
DA - 2026/04/01
VL - 149
IS - 4
SP - 1381
EP - 1395
SN - 0006-8950
PB - Oxford University Press
DO - 10.1093/brain/awaf412
UR - https://doi.org/10.1093/brain/awaf412
LA - en
ER -

CSL-JSON

{
"id": "10.1093/brain/awaf412",
"type": "article-journal",
"title": "Multimodal multicentre investigation of diagnostic and prognostic markers in disorders of consciousness",
"container-title": "Brain : a journal of neurology",
"author": [
{
"family": "Manasova",
"given": "Dragana"
},
{
"family": "Belloli",
"given": "Laouen Mayal Louan"
},
{
"family": "Rosenfelder",
"given": "Martin Justinus"
},
{
"family": "Willacker",
"given": "Lina"
},
{
"family": "Fló Rama",
"given": "Emilia"
},
{
"family": "Valota",
"given": "Chiara"
},
{
"family": "Hermann",
"given": "Bertrand"
},
{
"family": "Kaufmann",
"given": "Brigitte Charlotte"
},
{
"family": "Pirastru",
"given": "Alice"
},
{
"family": "Derchi",
"given": "Chiara Camilla"
},
{
"family": "Raiser",
"given": "Theresa"
},
{
"family": "Valente",
"given": "Melanie"
},
{
"family": "Sangare",
"given": "Aude"
},
{
"family": "Türker",
"given": "Başak"
},
{
"family": "Pyatigorskaya",
"given": "Nadya"
},
{
"family": "Béranger",
"given": "Benoît"
},
{
"family": "Colombo",
"given": "Michele"
},
{
"family": "Munoz-Musat",
"given": "Esteban"
},
{
"family": "Escrichs",
"given": "Anira"
},
{
"family": "Atzori",
"given": "Tiziana"
},
{
"family": "Baglio",
"given": "Francesca"
},
{
"family": "Lapa",
"given": "Constantin"
},
{
"family": "Berlis",
"given": "Ansgar"
},
{
"family": "Krüger",
"given": "Kristina"
},
{
"family": "Luther",
"given": "Tina"
},
{
"family": "Perlbarg",
"given": "Vincent"
},
{
"family": "Deco",
"given": "Gustavo"
},
{
"family": "Sanz-Perl",
"given": "Yonathan"
},
{
"family": "Tagliazucchi",
"given": "Enzo"
},
{
"family": "Puybasset",
"given": "Louis"
},
{
"family": "Rohaut",
"given": "Benjamin"
},
{
"family": "Naccache",
"given": "Lionel"
},
{
"family": "Comanducci",
"given": "Angela"
},
{
"family": "Arzi",
"given": "Anat"
},
{
"family": "Rosanova",
"given": "Mario"
},
{
"family": "Bender",
"given": "Andreas"
},
{
"family": "Sitt",
"given": "Jacobo Diego"
}
],
"container-title-short": "Brain",
"volume": "149",
"issue": "4",
"page": "1381-1395",
"DOI": "10.1093/brain/awaf412",
"PMID": "41499248",
"PMCID": "PMC13058464",
"ISSN": "0006-8950",
"publisher": "Oxford University Press",
"URL": "https://doi.org/10.1093/brain/awaf412",
"language": "en",
"issued": {
"date-parts": [
[
2026,
4,
1
]
]
}
}

The tracing map gets a citation of its own once an author has validated it and it has a DOI.

Similar papers

The papers with a page that share the most with this one: the tools found in their code, their categories, datasets, cited references and authors, the rarest counting most.

[1] doi:10.21203/rs.3.rs-9914920/v1 [code]
Prediction of cognitive performance by demographics, sleep, and brain morphometry: machine learning findings from ENIGMA-Sleep Working Group
Journal: Research Square (preprint)
In common: neuromaps, statannotations, XGBoost, 9 other tools, structural MRI / diffusion
[2] doi:10.1007/s00234-026-04103-8 [code]
Enhanced detection of subtle cortical abnormalities in focal epilepsy using 7 T MRI surface-based models and graph neural networks.
Journal: Neuroradiology
In common: PyBIDS, statannotations, FreeSurfer, 8 other tools, EEG, structural MRI / diffusion
[3] doi:10.64898/2026.08.18.26360725 [code]
Temporal pole blurring in hippocampal sclerosis reflects seizure-disrupted myelination
Journal: medRxiv (preprint)
In common: PyBIDS, statannotations, FreeSurfer, 8 other tools, structural MRI / diffusion
[4] doi:10.1186/s12967-026-08108-y [code]
An explainable multimodal machine learning model for diagnosing disorders of consciousness: evidence from a large multicenter Chinese cohort.
Journal: Journal of translational medicine
In common: MNE-Python, pandas, SciPy, 1 other tool, EEG, other condition, 6 references
[5] doi:10.1038/s41398-026-04157-5 [code]
Association of glymphatic function with 40-Hz neural oscillations, systemic metabolic markers, and cognitive performance in healthy aging adults: An EEG and MRI study.
Journal: Translational psychiatry
In common: fMRIPrep, PyBIDS, FreeSurfer, 7 other tools, EEG, structural MRI / diffusion
[6] doi:10.1093/nc/niag043 [code]
Demographics-robust spontaneous eye blinking slowing in patients with severe acquired brain injury.
Journal: Neuroscience of consciousness
In common: statannotations, MNE-Python, seaborn, 5 other tools, other condition, 3 references
[7] doi:10.21203/rs.3.rs-9326213/v1 [code]
Multi-task fMRI outperforms resting-state fMRI for revealing task-invariant organization of the human brain
Journal: Research Square (preprint)
In common: neuromaps, statannotations, FreeSurfer, 8 other tools
[8] doi:10.1162/imag.a.1269 [code]
From early to contemporary normative modeling: Mapping individual differences in neurophysiological signals.
Journal: Imaging neuroscience (Cambridge, Mass.)
In common: specparam (formerly FOOOF), FreeSurfer, MNE-Python, 8 other tools, EEG
[9] doi:10.1162/imag.a.1347 [code]
Neural and behavioural correlates of theory of mind reasoning in five-year-old children born preterm.
Journal: Imaging neuroscience (Cambridge, Mass.)
In common: fMRIPrep, PyBIDS, FreeSurfer, 7 other tools, other condition
[10] doi:10.1038/s41586-026-10631-3 [code]
A prognostic human brain network for diffuse midline glioma.
Journal: Nature
In common: neuromaps, FreeSurfer, Nilearn, 7 other tools, other condition, 1 reference

Contribute

The authors of this paper can claim it, correct its record and validate its tracing map, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to OSCR's own machine, which answers it; your account page follows them.

Sign in with ORCID to claim this paper as one of its authors, correct its record or validate its tracing map: when the paper's metadata lists your ORCID iD, you are recognized at once. Maintainers of its code: sign in with GitHub, then claim the repository on your account page.

Request its removal

To ask OSCR to remove this record, the copies of its authors' scripts or its tracing map, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).

Discussion, reproductions, activity

Discussion: questions and error reports about this paper and its code, from signed-in readers and its authors. It opens with sign-in.

Reproductions: reports from readers who ran the authors' code: what they reproduced, with which environment, commit and data. It opens with sign-in.

Activity: what happens around this paper: new versions of its record, its map's validation, discussions and reproductions. It opens with sign-in.