SUR1-TRPM4 is expressed in human epilepsy and promotes neuron hyperactivity and seizures in rodents.
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The authors' code
MATLAB · 341 lines · 13 KB · MIT
- % Calcium Response Time Series Analysis
- % Created By: Ujwal Boddeti, BS
- % Created Date: 10/9/24
- % Last Editted Date: 10/29/24
- %
- % Aim: ***
- %
- %% Open data files
- clear all
- close all
- num_cells_wt = 19;
- num_cells_delta = 18;
- fs = 1000;
- temp = readtable("Ca_Imaging_Analysis.xlsx");
- times = table2array(temp(:,1));
- ca_wt_time_series = [table2array(temp(:,2)) table2array(temp(:,3)) table2array(temp(:,4)) table2array(temp(:,5)) table2array(temp(:,6)) table2array(temp(:,7)) table2array(temp(:,8)) table2array(temp(:,9)) table2array(temp(:,10)) table2array(temp(:,11)) table2array(temp(:,12)) table2array(temp(:,13)) table2array(temp(:,14)) table2array(temp(:,15)) table2array(temp(:,16)) table2array(temp(:,17)) table2array(temp(:,18)) table2array(temp(:,19)) table2array(temp(:,20))];
- ca_delta_time_series = [table2array(temp(:,22)) table2array(temp(:,23)) table2array(temp(:,24)) table2array(temp(:,25)) table2array(temp(:,26)) table2array(temp(:,27)) table2array(temp(:,28)) table2array(temp(:,29)) table2array(temp(:,30)) table2array(temp(:,31)) table2array(temp(:,32)) table2array(temp(:,33)) table2array(temp(:,34)) table2array(temp(:,35)) table2array(temp(:,36)) table2array(temp(:,37)) table2array(temp(:,38)) table2array(temp(:,39))];
- analysis_results = struct;
- %% Figure 1
- figure;
- t = tiledlayout(1,2,"TileSpacing","compact","Padding","compact");
- t1 = nexttile(1);
- plot(ca_wt_time_series);
- title("WT");
- xlabel("Time (sec)");
- ylabel("\DeltaF/F0","Interpreter","tex");
- t2 = nexttile(2);
- plot(ca_delta_time_series);
- title("Delta");
- xlabel("Time (sec)");
- ylabel("\DeltaF/F0","Interpreter","tex");
- linkaxes([t1,t2],'y');
- %% Figure 2
- figure;
- t = tiledlayout('flow',"TileSpacing","compact","Padding","compact");
- nexttile; hold on
- plot(mean(ca_wt_time_series,2),'Color','red','DisplayName',"WT");
- plot(mean(ca_delta_time_series,2),'Color','blue','DisplayName',"Delta");
- xlim([0 605]);
- title("Calcium Response");
- xlabel("Time (sec)");
- ylabel("\DeltaF/F0","Interpreter","tex");
- legend;
- %% Figure 3
- figure;
- t = tiledlayout(1,3,"TileSpacing","compact","Padding","compact");
- t1 = nexttile;
- hold on
- plot(diff(mean(ca_wt_time_series,2)),'Color','red','DisplayName',"WT");
- plot(diff(mean(ca_delta_time_series,2)),'Color','blue','DisplayName',"Delta");
- title("Calcium Response (WT and Delta)");
- xlabel("Time (sec)");
- ylabel("\DeltaF/F0","Interpreter","tex");
- legend;
- t2 = nexttile;
- plot(diff(mean(ca_wt_time_series,2)),'Color','red','DisplayName',"WT");
- title("Calcium Response (WT)");
- xlabel("Time (sec)");
- ylabel("\DeltaF/F0","Interpreter","tex");
- t3 = nexttile;
- plot(diff(mean(ca_delta_time_series,2)),'Color','blue','DisplayName',"Delta");
- xlim([0 605]);
- title("Calcium Response (Delta)");
- xlabel("Time (sec)");
- ylabel("\DeltaF/F0","Interpreter","tex");
- linkaxes([t1,t2,t3],'y');
- %% Figure 4
- axes = [];
- figure;
- t = tiledlayout('flow',"TileSpacing","compact","Padding","compact");
- diff_wt_time_series = [];
- for ii = 1:num_cells_wt
- t1 = nexttile;
- hold on
- Raw = plot(ca_wt_time_series(:,ii),'Color','red','HandleVisibility', 'off');
- AOC = area(ca_wt_time_series(:,ii), 'facecolor', [254 220 220]/256, 'HandleVisibility', 'off');
- uistack(Raw,'top');
- legend('boxoff')
- title("Cell "+ii);
- xlabel("Time (sec)");
- ylabel("\DeltaF/F0","Interpreter","tex");
- legend;
- axes = [axes t1];
- diff_wt_time_series = [diff_wt_time_series diff(ca_wt_time_series(:,ii))];
- end
- title(t,"Wildtype Ca Response");
- %% Figure 5
- figure;
- t = tiledlayout('flow',"TileSpacing","compact","Padding","compact");
- diff_delta_time_series = [];
- for ii = 1:num_cells_delta
- t2 = nexttile;
- hold on
- Raw = plot(ca_delta_time_series(:,ii),'Color','blue','HandleVisibility', 'off');
- AOC = area(ca_delta_time_series(:,ii), 'facecolor', [222 242 254]/256, 'HandleVisibility', 'off');
- uistack(Raw,'top');
- legend('boxoff')
- title("Cell "+ii);
- xlabel("Time (sec)");
- ylabel("\DeltaF/F0","Interpreter","tex");
- legend;
- axes = [axes t2];
- diff_delta_time_series = [diff_delta_time_series diff(ca_delta_time_series(:,ii))];
- end
- title(t,"Delta Ca Response");
- linkaxes(axes,'y');
- % Analysis for baseline slope
- wt_slopes_baseline = [];
- for ii = 1:num_cells_wt
- diff_signal = diff(ca_wt_time_series(:,ii));
- amplitude_threshold = mean(diff_signal)+6*std(diff_signal);
- [~,locs] = findpeaks(diff_signal,'MinPeakHeight',amplitude_threshold);
- if isempty(locs)
- x1 = 0;
- x2 = 90;
- y1 = ca_wt_time_series(1,ii);
- y2 = ca_wt_time_series(x2,ii);
- else
- x1 = 0;
- x2 = times(locs(1));
- y1 = ca_wt_time_series(1,ii);
- y2 = ca_wt_time_series(locs(1),ii);
- end
- dydt = (y2-y1)/(x2-x1);
- if x2>90;x2_area=90; end
- wt_slopes_baseline = [wt_slopes_baseline; x2 y2 dydt trapz(ca_wt_time_series(1:x2_area,ii)) trapz(ca_wt_time_series(x2_area:end,ii)) trapz(ca_wt_time_series(:,ii)) max(ca_wt_time_series(:,ii))];
- end
- delta_slopes_baseline = [];
- for ii = 1:num_cells_delta
- diff_signal = diff(ca_delta_time_series(:,ii));
- amplitude_threshold = mean(diff_signal)+6*std(diff_signal);
- [pks,locs] = findpeaks(diff_signal,'MinPeakHeight',amplitude_threshold);
- if isempty(locs)
- x1 = 0;
- x2 = 90;
- y1 = ca_delta_time_series(1,ii);
- y2 = ca_delta_time_series(x2,ii);
- else
- x1 = 0;
- x2 = times(locs(1));
- y1 = ca_delta_time_series(1,ii);
- y2 = ca_delta_time_series(locs(1),ii);
- end
- dydt = (y2-y1)/(x2-x1);
- if x2>90;x2_area=90; end
- delta_slopes_baseline = [delta_slopes_baseline; x2 y2 dydt trapz(ca_delta_time_series(1:x2_area,ii)) trapz(ca_delta_time_series(x2_area:end,ii)) trapz(ca_delta_time_series(:,ii)) max(ca_delta_time_series(:,ii))];
- end
- analysis_results.wt.slopes_baseline = wt_slopes_baseline(:,3);
- analysis_results.delta.slopes_baseline = delta_slopes_baseline(:,3);
- % Analysis for instantaneous spiking rate
- %% Figure 6
- figure;
- t = tiledlayout('flow',"TileSpacing","compact","Padding","compact");
- wt_slopes_low_mg = [];
- wt_low_mg_amplitudes = [];
- axes = [];
- for ii = 1:num_cells_wt
- t1 = nexttile;
- hold on
- signal = smoothdata(smoothdata(ca_wt_time_series(:,ii),'gaussian'),'sgolay');
- findpeaks(signal)
- [~,locs] = findpeaks(signal);
- x1 = wt_slopes_baseline(ii,1);
- y1 = wt_slopes_baseline(ii,2);
- if isempty(locs)
- [max_1, index] = max(signal);
- x2 = index;
- y2 = max_1;
- else
- x2 = locs(1);
- y2 = signal(x2);
- if y2 < 0
- x2 = locs(2);
- y2 = signal(x2);
- end
- end
- dydt = (y2-y1)/(x2-x1);
- wt_low_mg_amplitudes = [wt_low_mg_amplitudes; y2];
- wt_slopes_low_mg = [wt_slopes_low_mg; dydt];
- plot(signal,'Color','blue','DisplayName','Raw Trace');
- title("Cell "+ii);
- xlabel("Time (sec)");
- ylabel("\DeltaF/F0","Interpreter","tex");
- axes = [axes t1];
- end
- title(t,"Instantaneous WT Ca Response");
- linkaxes(axes,'y');
- %% Figure 7
- figure;
- t = tiledlayout('flow',"TileSpacing","compact","Padding","compact");
- delta_slopes_low_mg = [];
- delta_low_mg_amplitudes = [];
- axes = [];
- for ii = 1:num_cells_delta
- t1 = nexttile;
- hold on
- signal = smoothdata(smoothdata(ca_delta_time_series(:,ii),'gaussian'),'sgolay');
- findpeaks(signal)
- [~,locs] = findpeaks(signal);
- x1 = delta_slopes_baseline(ii,1);
- y1 = delta_slopes_baseline(ii,2);
- if isempty(locs)
- [max_1, index] = max(signal);
- x2 = index;
- y2 = max_1;
- else
- x2 = locs(1);
- y2 = signal(x2);
- end
- dydt = (y2-y1)/(x2-x1);
- delta_low_mg_amplitudes = [delta_low_mg_amplitudes; y2];
- delta_slopes_low_mg = [delta_slopes_low_mg; dydt];
- plot(signal,'Color','blue','DisplayName','Raw Trace');
- title("Cell "+ii);
- xlabel("Time (sec)");
- ylabel("\DeltaF/F0","Interpreter","tex");
- axes = [axes t1];
- end
- title(t,"Instantaneous Delta Ca Response");
- linkaxes(axes,'y');
- analysis_results.wt.amplitudes_low_mg = wt_low_mg_amplitudes;
- analysis_results.delta.amplitudes_delta = delta_low_mg_amplitudes;
- analysis_results.wt.slopes_low_mg = wt_slopes_low_mg;
- analysis_results.delta.slopes_delta = delta_slopes_low_mg;
- %% Spike frequency analysis
- spike_detection_threshold = 2;
- refractory_period = 2;
- ca_wt_spike_frequencies = [];
- ca_wt_spike_amplitude = [];
- for ii = 1:num_cells_wt
- low_mg_time_series_segment = diff(ca_wt_time_series(round(wt_slopes_baseline(ii,1)):end,ii));
- spike_threshold = mean(low_mg_time_series_segment) + spike_detection_threshold*std(low_mg_time_series_segment);
- [pks,locs] = findpeaks(low_mg_time_series_segment,'MinPeakHeight',0.01,'MinPeakDistance',refractory_period);
- third_length = round(length(low_mg_time_series_segment)/3);
- first_bin_spike_frequency = length(locs(locs<third_length))/third_length;
- second_bin_spike_frequency = length(locs(locs>=third_length & locs<=third_length*2))/third_length;
- third_bin_spike_frequency = length(locs(locs>third_length*2))/third_length;
- ca_wt_spike_frequencies = [ca_wt_spike_frequencies; first_bin_spike_frequency second_bin_spike_frequency third_bin_spike_frequency];
- first_bin_spike_amplitude = mean(pks(locs<third_length),'all','omitnan');
- second_bin_spike_amplitude = mean(pks(locs>=third_length & locs<=third_length*2),'all','omitnan');
- third_bin_spike_amplitude = mean(pks(locs>third_length*2),'all','omitnan');
- ca_wt_spike_amplitude = [ca_wt_spike_amplitude; first_bin_spike_amplitude second_bin_spike_amplitude third_bin_spike_amplitude];
- end
- ca_wt_spike_frequencies = ca_wt_spike_frequencies';
- ca_wt_spike_amplitude = ca_wt_spike_amplitude';
- ca_delta_spike_frequencies = [];
- ca_delta_spike_amplitude = [];
- for ii = 1:num_cells_delta
- low_mg_time_series_segment = diff(ca_delta_time_series(round(delta_slopes_baseline(ii,1)):end,ii));
- spike_threshold = mean(low_mg_time_series_segment) + spike_detection_threshold*std(low_mg_time_series_segment);
- [pks,locs] = findpeaks(low_mg_time_series_segment,'MinPeakHeight',0.01,'MinPeakDistance',refractory_period);
- third_length = round(length(low_mg_time_series_segment)/3);
- first_bin_spike_frequency = length(locs(locs<third_length))/third_length;
- second_bin_spike_frequency = length(locs(locs>=third_length & locs<=third_length*2))/third_length;
- third_bin_spike_frequency = length(locs(locs>third_length*2))/third_length;
- ca_delta_spike_frequencies = [ca_delta_spike_frequencies; first_bin_spike_frequency second_bin_spike_frequency third_bin_spike_frequency];
- first_bin_spike_amplitude = mean(pks(locs<third_length),'all','omitnan');
- second_bin_spike_amplitude = mean(pks(locs>=third_length & locs<=third_length*2),'all','omitnan');
- third_bin_spike_amplitude = mean(pks(locs>third_length*2),'all','omitnan');
- ca_delta_spike_amplitude = [ca_delta_spike_amplitude; first_bin_spike_amplitude second_bin_spike_amplitude third_bin_spike_amplitude];
- end
- ca_delta_spike_frequencies = ca_delta_spike_frequencies';
- ca_delta_spike_amplitude = ca_delta_spike_amplitude';
- analysis_results.wt.spike_freq = ca_wt_spike_frequencies;
- analysis_results.delta.spike_freq = ca_delta_spike_frequencies;
- analysis_results.wt.spike_amplitude = ca_wt_spike_amplitude;
- analysis_results.delta.spike_amplitude = ca_delta_spike_amplitude;
- % Figure 8
- figure;
- t1 = tiledlayout(2,2,"TileSpacing","compact","Padding","compact");
- ax1 = nexttile;
- plot(analysis_results.wt.spike_freq,'Marker','.','MarkerSize',40);
- title("WT Spike Frequencies");
- ax2 = nexttile;
- plot(analysis_results.delta.spike_freq,'Marker','.','MarkerSize',40);
- title("Delta Spike Frequencies");
- ax3 = nexttile;
- plot(mean(analysis_results.wt.spike_freq,2),'Marker','.','MarkerSize',40);
- title("Average WT Spike Frequencies");
- ax4 = nexttile;
- plot(mean(analysis_results.delta.spike_freq,2),'Marker','.','MarkerSize',40);
- title("Average Delta Spike Frequencies");
- linkaxes([ax1 ax2 ax3 ax4],'y');
- % Figure 9
- figure;
- t1 = tiledlayout(2,2,"TileSpacing","compact","Padding","compact");
- ax1 = nexttile;
- plot(analysis_results.wt.spike_amplitude,'Marker','.','MarkerSize',40);
- title("WT Spike Amplitude");
- ax2 = nexttile;
- plot(analysis_results.delta.spike_amplitude,'Marker','.','MarkerSize',40);
- title("Delta Spike Ampltiude");
- ax3 = nexttile;
- plot(mean(analysis_results.wt.spike_amplitude,2,"omitnan"),'Marker','.','MarkerSize',40);
- title("Average WT Spike Amplitude");
- ax4 = nexttile;
- plot(mean(analysis_results.delta.spike_amplitude,2,"omitnan"),'Marker','.','MarkerSize',40);
- title("Average Delta Spike Amplitude");
- linkaxes([ax1 ax2 ax3 ax4],'y');
- %%
- figure;
- t1 = tiledlayout(1,2,'Padding','compact','TileSpacing','compact');
- ax1 = nexttile;
- plot(mean(diff_wt_time_series,2));
- ax2 = nexttile;
- plot(mean(diff_delta_time_series,2));
- linkaxes([ax1 ax2],'y');
cellCaAnalysis.m, under MIT · at the source
Overview
- Department of Neurosurgery, University of Maryland School of Medicine, Baltimore, MD 21201, USA
- Department of Neurology, University of Maryland School of Medicine, Baltimore, MD 21201, USA
- Surgical Neurology Branch, National Institute of Neurologic Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892, USA
- Department of Pathology, University of Maryland School of Medicine, Baltimore, MD 21201, USA
- Department of Physiology, University of Maryland School of Medicine, Baltimore, MD 21201, USA
Abstract
One-third of epilepsy patients do not achieve sufficient seizure freedom with current standard anti-seizure medications. Better understanding of the pathological mechanisms contributing to epileptogenesis is thus necessary to improve current therapies. SUR1-TRPM4 is a depolarizing ion channel minimally expressed in a healthy brain that is upregulated de novo in neurons and glia after epileptogenic CNS injuries such as traumatic brain injury and stroke. However, its role in epilepsy is not well understood.
Here, we demonstrate using immunofluorescent microscopy that SUR1-TRPM4 expression is elevated in neurons within an electrographically sorted human epileptic brain compared with a non-epileptic brain obtained after resection from six drug-resistant temporal lobe epilepsy patients. Additionally, we utilized immunofluorescence and co-immunoprecipitation to observe that SUR1-TRPM4 is upregulated within the hippocampus and temporal cortex in mice after pentylenetetrazol (PTZ) kindling, a chronic model of rodent epilepsy. Pharmacologic inhibition of SUR1-TRPM4 using either the US Food and Drug Administration (FDA)-approved drug glyburide or 9-phenanthrol, as well as either constitutive or neuron-specific knockout of this channel, attenuated chronic seizure development in this model. Exogenous overexpression of SUR1-TRPM4 by plasmid transfection in neurons in vitro increased neuronal hyperexcitability in response to low Mg2+ stimulation, while pharmacologic inhibition of endogenous TRPM4 attenuated neuronal population hyperexcitation.
Collectively, our results reveal that elevated SUR1-TRPM4 expression found in human and rodent epileptic neurons promotes chronic seizures by increasing neuronal excitation. These findings directly support clinical investigation of SUR1-TRPM4 inhibitors as potential anti-seizure therapies in epilepsy patients and suggest further investigations into the contribution of SUR1-TRPM4 to seizures induced by specific epileptogenic insults, such as traumatic brain injury (TBI), are warranted.
Reproduced under the paper's license (CC BY), from the paper cited above.
Repositories
Its files are read in the Code ↔ Paper reader above.
Zenodo 14908460
Availability: 1 check, the latest on 27 September 2026: the link answers (HTTP 200)
- 27 September 2026: the link answers (HTTP 200)
3 files
- cellCaAnalysis.m, MATLAB, 341 lines
- LICENSE, License, 21 lines
- README.md, Text, 1 line
brain-research-laboratory/sur1-trpm4
e145f4874996b107bff1e1a4d37632d444c7a809, 29 January 2025Availability: 1 check, the latest on 27 September 2026: the link answers
- 27 September 2026: the link answers
3 files
- cellCaAnalysis.m, MATLAB, 341 lines
- LICENSE, License, 21 lines
- README.md, Text, 1 line
The paper's code and data availability statement is in the Data section.
Tracing map
Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.
What the map holds:
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- 2 scripts, each with its path and the digest of its content;
- no match between paragraphs and code yet;
- neither the text of the paper nor the code itself.
Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.
Data
No dataset and no data link were found in the paper.
Data availability
All data are available in the main text or the Supplementary material. All reported data will be shared by the corresponding author upon request. All original code has been deposited at Github and is publicly available at https://
Reproduced under the paper's license (CC BY), from the paper cited above.
Versions
The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.
Version 1, 27 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 18 authors, 6 keywords, 14 MeSH terms, 2 funders, 80 references.
Cite
This paper
Moyer, M. B., Ivanova, S., Keledjian, K., Kreinbrink, M., Langbein, J., Yang, P., McAfee, D., Boddeti, U., Khan, Z., Olu-Owotade, J., Zhang, T., Benavides, D. R., Diamond, J., Zaghloul, K., Bachani, M., Gerzanich, V., Simard, J. M., & Ksendzovsky, A. (2026). SUR1-TRPM4 is expressed in human epilepsy and promotes neuron hyperactivity and seizures in rodents. Brain : a journal of neurology, 149(6), 2124-2138. https://
BibTeX
@article{moyer2026sur1,
author = {Moyer, Mitchell B and Ivanova, Svetlana and Keledjian, Kaspar and Kreinbrink, Matthew and Langbein, Jenna and Yang, Penghua and McAfee, Darrian and Boddeti, Ujwal and Khan, Ziam and Olu-Owotade, Jemima and Zhang, Timothy and Benavides, David R and Diamond, Joshua and Zaghloul, Kareem and Bachani, Muznabanu and Gerzanich, Volodymyr and Simard, J Marc and Ksendzovsky, Alexander},
title = {{SUR1-TRPM4 is expressed in human epilepsy and promotes neuron hyperactivity and seizures in rodents}},
journal = {Brain : a journal of neurology},
year = {2026},
month = jun,
volume = {149},
number = {6},
pages = {2124--2138},
publisher = {Oxford University Press},
issn = {0006-8950},
doi = {10.1093/
url = {https://
pmid = {41239869},
pmcid = {PMC13232044}
}
RIS
TY - JOUR
AU - Moyer, Mitchell B
AU - Ivanova, Svetlana
AU - Keledjian, Kaspar
AU - Kreinbrink, Matthew
AU - Langbein, Jenna
AU - Yang, Penghua
AU - McAfee, Darrian
AU - Boddeti, Ujwal
AU - Khan, Ziam
AU - Olu-Owotade, Jemima
AU - Zhang, Timothy
AU - Benavides, David R
AU - Diamond, Joshua
AU - Zaghloul, Kareem
AU - Bachani, Muznabanu
AU - Gerzanich, Volodymyr
AU - Simard, J Marc
AU - Ksendzovsky, Alexander
TI - SUR1-TRPM4 is expressed in human epilepsy and promotes neuron hyperactivity and seizures in rodents
T2 - Brain : a journal of neurology
J2 - Brain
PY - 2026
DA - 2026/
VL - 149
IS - 6
SP - 2124
EP - 2138
SN - 0006-8950
PB - Oxford University Press
DO - 10.1093/
UR - https://
LA - en
ER -
CSL-JSON
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"id": "10.1093/
"type": "article-journal",
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"container-title": "Brain : a journal of neurology",
"author": [
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{
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{
"family": "Boddeti",
"given": "Ujwal"
},
{
"family": "Khan",
"given": "Ziam"
},
{
"family": "Olu-Owotade",
"given": "Jemima"
},
{
"family": "Zhang",
"given": "Timothy"
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{
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"given": "David R"
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{
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"given": "Joshua"
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{
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"container-title-short":
"volume": "149",
"issue": "6",
"page": "2124-2138",
"DOI": "10.1093/
"PMID": "41239869",
"PMCID": "PMC13232044",
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"URL": "https://
"language": "en",
"issued": {
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}
}
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