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Functional divergence of Capicua isoforms explains differential tissue vulnerability in neurological disease.

Overview

Authors: Hamin Lee1,2,3, Esmeralda Villavicencio Gonzalez1,2,3, Elias M Rivera2,3, Mark A Durham2,3,4,5, Ronald Richman2,3, Elizabeth H-Y Chu2,3, Kailey Xia2,3, Hu Chen3,6, Zhandong Liu3,6, Surabi Veeraragavan2,3, Binoy Shivanna7, Huda Y Zoghbi1,2,3,4,6,7,8,9
  1. Program in Genetics and Genomics, Baylor College of Medicine, Houston, Texas 77030, USA
  2. Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA
  3. Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, Texas 77030, USA
  4. Program in Developmental Biology, Baylor College of Medicine, Houston, Texas 77030, USA
  5. Medical Scientist Training Program, Baylor College of Medicine, Houston, Texas 77030, USA
  6. Department of Pediatrics, Baylor College of Medicine, Houston, Texas 77030, USA
  7. Department of Pediatrics, Texas Children's Hospital, Baylor College of Medicine, Houston, Texas 77030, USA
  8. Department of Neuroscience, Baylor College of Medicine, Houston, Texas 77030, USA
  9. Howard Hughes Medical Institute, Baylor College of Medicine, Houston, Texas 77030, USA
Institutions: Baylor College of Medicine (United States); Texas Children's Hospital (United States)
Journal: Genes & development, volume 40, issue 15-16, pages 1267-1282
Dates: received 21 December 2025; accepted 6 March 2026; published online 1 August 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1101/gad.353596.125 · PMID 42476817 · PMCID PMC13390769 · OpenAlex W4415945710
Open access: diamond, a free copy (OpenAlex)
Status: data only
Categories: human (organism), mouse (organism), other condition (population), cellular / molecular (subfield)
Methods: Statistics, Connectivity
Keywords: ATXN1, ATXN1L, CIC, Capicua, isoform, neurodegeneration, neurodevelopment, paralog, protein complex
MeSH: Nervous System Diseases*, Animals, Ataxin-1, Brain, Humans, Mice, Mice, Knockout, Protein Isoforms, Repressor Proteins (* major topic)
Topic: Genetic Neurodegenerative Diseases (Cellular and Molecular Neuroscience, Neuroscience), according to OpenAlex
Funding: National Institute of Aging (F31 AG077918); Huffington Foundation; NINDS NIH HHS (R01 NS027699); National Institutes of Health Cancer Center (P30 CA125123); NICHD NIH HHS (P50 HD103555); National Heart, Lung, and Blood Institute (R01 HL181470); Cockrell Family Funding; Freedom Together Foundation (MR-2023-4260); Cancer Biology Research (1R50CA283804); NCI NIH HHS (P30 CA125123, R50 CA283804); Eunice Kennedy Shriver National Institute of Child Health and Human Development Intellectual and Developmental Disabilities Research Center (P50HD103555); NHLBI NIH HHS (R01 HL181470); National Institute of Neurological Disorders and Stroke (R01 NS027699); Chao Endowment; Howard Hughes Medical Institute; NIA NIH HHS (F31 AG077918)
Citations: cited by 1 paper (Europe PMC); 59 references in the paper
Notices: A comment on this paper has been published (42481419, from Europe PMC)

Abstract

Many neurological diseases impact specific brain regions despite widespread expression of the disease-related protein. Spinocerebellar ataxia type 1 (SCA1) primarily affects the cerebellum, though Ataxin-1 (ATXN1) is widely expressed. We previously showed that intensified interaction between mutant ATXN1 and Capicua (CIC) drives SCA1 pathogenesis in the cerebellum, whereas ATXN1 loss augments amyloid β production in the hippocampus and cortex. CIC, however, forms a complex with ATXN1 and its paralog, Ataxin-1-like (ATXN1L), yet knockout of either yields completely different phenotypes. To determine whether this could be due to CIC having two isoforms, we generated mice bearing either the long (CIC-L) or short (CIC-S) isoform. Loss of CIC-L led to cognitive deficits, whereas loss of CIC-S caused early postnatal lethality, phenocopying ATXN1 and ATXN1L knockout mice, respectively. Furthermore, CIC-L preferentially interacts with ATXN1, and CIC-S with ATXN1L. Our data underscore the importance of isoform–paralog interplay in studying regional vulnerability in neurodegenerative diseases.

Reproduced under the paper's license (CC BY), from the paper cited above.

Code

The paper links to its data, not to its authors' code: see the Data section.

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Data

Datasets cited

Data and material availability

All data needed to evaluate the conclusions in this study are present in here and/or in the Supplemental Material. RNA sequencing reads and processed data were deposited to GEO (GSE310453 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310453)).

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 12 authors, 9 keywords, 9 MeSH terms, 16 funders, 59 references, 1 integrity notice.

Cite

This paper

Lee, H., Gonzalez, E. V., Rivera, E. M., Durham, M. A., Richman, R., Chu, E. H.-Y., Xia, K., Chen, H., Liu, Z., Veeraragavan, S., Shivanna, B., & Zoghbi, H. Y. (2026). Functional divergence of Capicua isoforms explains differential tissue vulnerability in neurological disease. Genes & development, 40(15-16), 1267-1282. https://doi.org/10.1101/gad.353596.125

BibTeX

@article{lee2026functional,
author = {Lee, Hamin and Gonzalez, Esmeralda Villavicencio and Rivera, Elias M and Durham, Mark A and Richman, Ronald and Chu, Elizabeth H-Y and Xia, Kailey and Chen, Hu and Liu, Zhandong and Veeraragavan, Surabi and Shivanna, Binoy and Zoghbi, Huda Y},
title = {{Functional divergence of Capicua isoforms explains differential tissue vulnerability in neurological disease}},
journal = {Genes \& development},
year = {2026},
month = aug,
volume = {40},
number = {15-16},
pages = {1267--1282},
publisher = {Cold Spring Harbor Laboratory Press},
issn = {0890-9369},
doi = {10.1101/gad.353596.125},
url = {https://doi.org/10.1101/gad.353596.125},
pmid = {42476817},
pmcid = {PMC13390769}
}

RIS

TY - JOUR
AU - Lee, Hamin
AU - Gonzalez, Esmeralda Villavicencio
AU - Rivera, Elias M
AU - Durham, Mark A
AU - Richman, Ronald
AU - Chu, Elizabeth H-Y
AU - Xia, Kailey
AU - Chen, Hu
AU - Liu, Zhandong
AU - Veeraragavan, Surabi
AU - Shivanna, Binoy
AU - Zoghbi, Huda Y
TI - Functional divergence of Capicua isoforms explains differential tissue vulnerability in neurological disease
T2 - Genes & development
J2 - Genes Dev
PY - 2026
DA - 2026/08/03
VL - 40
IS - 15-16
SP - 1267
EP - 1282
SN - 0890-9369
PB - Cold Spring Harbor Laboratory Press
DO - 10.1101/gad.353596.125
UR - https://doi.org/10.1101/gad.353596.125
LA - en
ER -

CSL-JSON

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